Basic Information | |
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Family ID | F084030 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 112 |
Average Sequence Length | 49 residues |
Representative Sequence | VETLSFDLLQFLYHLALAILVGGSLVLGTAVAPALFASSRSRADAGALFG |
Number of Associated Samples | 99 |
Number of Associated Scaffolds | 112 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 50.89 % |
% of genes near scaffold ends (potentially truncated) | 99.11 % |
% of genes from short scaffolds (< 2000 bps) | 92.86 % |
Associated GOLD sequencing projects | 95 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.57 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (95.536 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (20.536 % of family members) |
Environment Ontology (ENVO) | Unclassified (36.607 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (49.107 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 57.69% β-sheet: 0.00% Coil/Unstructured: 42.31% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.57 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Groundwater Sediment Soil Groundwater Sediment Soil Vadose Zone Soil Grasslands Soil Switchgrass Rhizosphere Agricultural Soil Permafrost Soil Grasslands Soil Soil Hardwood Forest Soil Soil Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Switchgrass Rhizosphere Soil Arabidopsis Rhizosphere Corn Rhizosphere Arabidopsis Thaliana Rhizosphere Populus Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI12053J15887_101649542 | 3300001661 | Forest Soil | VETIYFDTLQFVYHLALAILVGGAVVLGAAAAPAIFAAVTSRGEAGAIF |
Ga0066677_100814653 | 3300005171 | Soil | METLTFDLIQFLYHLALAVLIGGSLVLGTAVAPALFASGRSRADAGTLFGSVLARFDGLAIFSV |
Ga0066677_101472821 | 3300005171 | Soil | VETLYFDLLQFLYHFALVILVGGALVLGAAVAPALFATARSRAEAGTTFGGVLA |
Ga0066688_108241222 | 3300005178 | Soil | VETLSFDLLQFLYHLALAILVGGSLVLGTAVAPALFGSAGSRG |
Ga0066685_105196531 | 3300005180 | Soil | VETLSFDLLQFLYHLSLAILVGGSLVLGTAVAPALFASPRSRADAGTLFGSV |
Ga0066685_105697731 | 3300005180 | Soil | VETLSFDLLQFLYHLALAILIGGSLVLGTAVAPALFTSARSRGEAGTLFGSVLARFDGLAIF |
Ga0065707_111163631 | 3300005295 | Switchgrass Rhizosphere | VETLSFDLLQFLYHLALAILVGGSLVLGTAVAPALFASSH |
Ga0070690_1014341352 | 3300005330 | Switchgrass Rhizosphere | VETLSFDLLQFLYHLALAILVGGSLVLGTAVAPALFASSRSRADAGTLFGSV |
Ga0070708_1016632421 | 3300005445 | Corn, Switchgrass And Miscanthus Rhizosphere | VETLSFDLLQFLYHLALAILVGGSLVLGTAVAPALFASSRSRADAGTLFGSVLARFDGL |
Ga0070698_1001259981 | 3300005471 | Corn, Switchgrass And Miscanthus Rhizosphere | VETLSFDLLQFLYHLALAILVGGSLVLGTAVAPALFESTRSRADAG |
Ga0070699_1003211522 | 3300005518 | Corn, Switchgrass And Miscanthus Rhizosphere | VETLYFDALQFVYHLALAILVGGAVVLGLAAAPAIFATVSSRGEAGAVFGAVLGRYDVLA |
Ga0066697_102617582 | 3300005540 | Soil | VESLSFDLLQFLYHLSLAILVGGSLVLGTAVAPALFASRSRADAGTLFGSV |
Ga0070696_1000168431 | 3300005546 | Corn, Switchgrass And Miscanthus Rhizosphere | METLYFDTLQFVYHLALAILVGGAVVLGLAAAPAIFATVSSRGEAGAVFGAVLGRYDVLAVPCVFL |
Ga0070704_1021269832 | 3300005549 | Corn, Switchgrass And Miscanthus Rhizosphere | METLYFDALQFVYHLALAILVGGAVVLGLATAPAIFATVSSRGEAGA |
Ga0066692_101385913 | 3300005555 | Soil | VETLSFDLLQFLYHLALAILVGGSLVLGTAVAPALF |
Ga0066700_110317522 | 3300005559 | Soil | VETLYTDILQFVYHLTLAILVGGALVLGSAAAPAIF |
Ga0068857_1016728221 | 3300005577 | Corn Rhizosphere | METLYFDTLQFVYHLALAILVGGAVVLGLAAAPAIFATVSSRGEAGAVFGAVLGRY |
Ga0066654_105306031 | 3300005587 | Soil | VESLSFDLLQFLYHLSLAILVGGSLVLGTAVAPALFASRSRADAG |
Ga0066706_110335291 | 3300005598 | Soil | VSRHDAQVETLYFDVLQFLYHLALAVLVGGAVVLGAAAAPAI |
Ga0070702_1009702651 | 3300005615 | Corn, Switchgrass And Miscanthus Rhizosphere | VETLYFDALQFVYHLALAILVGGAVVLGLATAPAIFATVSSRGEAGAIFGAVLGR |
Ga0066656_104899081 | 3300006034 | Soil | METLAFDLLQFLYHLALAIVVGGSLVLGSVVAPALFASARSRAEAGTLFGTMLARFDG |
Ga0075432_102763181 | 3300006058 | Populus Rhizosphere | METLYFDTLQFVYHLALAILVGGAVVLGLAAAPAIFASVSSRGEAGTIFGAVL |
Ga0066653_103964411 | 3300006791 | Soil | VETLSFDLLQFLYHLALAILVGGSLVLGTAVAPALFASSRTSADAGTLFGSVLARFDG |
Ga0066659_113783201 | 3300006797 | Soil | METLTFDLIQFLYHLALAVLIGGSLVLGTAVAPALFSSGRSRA |
Ga0075434_1011426562 | 3300006871 | Populus Rhizosphere | VETLYFDTLQFLYHLALAIVVGGALVLGAAAAPAIFAAVRSR |
Ga0066710_1031490371 | 3300009012 | Grasslands Soil | VETLYFDVLQFLYHLALAILVGGALMLGTSVAPALFTTARSRAEAGTLFASVL |
Ga0066710_1040377892 | 3300009012 | Grasslands Soil | VDTLYTDTLQFVYHLALAILVGGAFVLGAAAAPGIFRTVRSRGEAGAIFGAVLARWDGL |
Ga0099830_109641501 | 3300009088 | Vadose Zone Soil | VETLSFDLLQFLYHLALAILVGGSLVLGTAVAPALFATNRSRADAGTLFGNVLARF |
Ga0099827_104570892 | 3300009090 | Vadose Zone Soil | VETLYFDVLQFLYHLALAILVGGALVLGTSVAPALFTT |
Ga0066709_1018728791 | 3300009137 | Grasslands Soil | VETLSFDLLQFLYHLALAILVGGSLVLGTAVAPALFGSAASRGEAGTLFGSVLARFDGLA |
Ga0099792_108959292 | 3300009143 | Vadose Zone Soil | LDSEIPPGHHALVETIYFDVLQLLYHLALAILVGGAVVLGAAAAPAIFASVPSRGEAGAIFGSVLGR |
Ga0114129_104660701 | 3300009147 | Populus Rhizosphere | VETLSFDLLQFLYHLALAILVGGSLVLGTAVAPAIFASVRSRADAGSLFG |
Ga0114129_106926551 | 3300009147 | Populus Rhizosphere | VETLSFDLLQFLYHLALAILVGGSLVLGTVVAPALFASSRSRAEAGTMFGTILARFDGLAVFSVIV |
Ga0075423_100874044 | 3300009162 | Populus Rhizosphere | VETLYFDTLQFLYHLALAILVGGALVLGAAAAPAIFA |
Ga0075423_102033243 | 3300009162 | Populus Rhizosphere | METLYFDTLQFVYHLALAILVAGAVVLGLAAAPAIFATVS |
Ga0075423_111656321 | 3300009162 | Populus Rhizosphere | MIRSASVENVGFDAVRFVYHLALALIVGGGVALGAAAAPAIFKSVRSRGEAGAIFGE |
Ga0134070_101985771 | 3300010301 | Grasslands Soil | METLYFDLLQFLYHLALAILVGGAIVLGATAAPAIFASIRSRGEAGAIFGAVLGR |
Ga0134088_105951691 | 3300010304 | Grasslands Soil | VETLSFDLLQFLYHLALAILVGGSLVLGTAVAPALFSSSRSRADAGTLFGNVLARFDG |
Ga0134109_104674201 | 3300010320 | Grasslands Soil | VETLYTDMLQFVYHLALAILVGGALVLGSAAAPGIFSTVRSRG |
Ga0134086_102889952 | 3300010323 | Grasslands Soil | VETLSFDLLQFLYHLALAILVGGSLVLGTAVAPALF* |
Ga0134065_100877742 | 3300010326 | Grasslands Soil | VETLYFDVLQFLYHLALAILVGGAVVLGAAAAPAIFASVRSRGEAGAIFGGVLGRYD |
Ga0134080_104123402 | 3300010333 | Grasslands Soil | VETLSFDLLQFLYHLSLAILVGGSLVLGTAVAPALFASRSRADAGTLFGSVLARFD |
Ga0134066_103114292 | 3300010364 | Grasslands Soil | VETLSFDLLQFLYHLALAILVGGSLVLGTAVAPALFSSSRSRSDAGTLFGNILARFDGLAIFSVV |
Ga0137392_110066442 | 3300011269 | Vadose Zone Soil | VETLSFDLLQFLYHLALAILVGGSLVLGTAVAPALFATNRSRADAGTLFGNVLARFDGLAIFSVI |
Ga0137393_109150851 | 3300011271 | Vadose Zone Soil | VETLYFDVLQFFYHLALALIVGGAIVLGSAVAPAVFRGARS |
Ga0120156_10206541 | 3300011996 | Permafrost | VETLSFDLLQFLYHLALAILVGGSLVLGTAVAPALFVSSRSRADAGTLFGS |
Ga0137389_100716021 | 3300012096 | Vadose Zone Soil | VETLYFDTLQFLYHLALAILVGGALVLGAAAAPAIFASVRSRGEAG |
Ga0137389_105851881 | 3300012096 | Vadose Zone Soil | VETLSFDLLQFLYHLALAILIGGSLVLGTAVAPALFSSSRSRADAGT |
Ga0137388_108006961 | 3300012189 | Vadose Zone Soil | VETLYFDTLQFLYHLALAILVGGALVLGAAAAPAIFASVRSRGE |
Ga0137383_106655392 | 3300012199 | Vadose Zone Soil | VRSEIPVCSDSPVETLSFDLLQFLYHLALAILVGGSLVLGTAVAPALFASSRSPADAGTLFG |
Ga0137383_113634902 | 3300012199 | Vadose Zone Soil | VETLSFDLLQFLYHLALAILVGGSLVLGTAVAPALFA |
Ga0137434_10805241 | 3300012225 | Soil | VETLYFDVLQFVYHLALAILVGGALVLGAAAAPAIFASVRSRGEAGAIFGTVLGRYDGVAILCVVLI |
Ga0137366_109747831 | 3300012354 | Vadose Zone Soil | METLYFDALQFLYHLALAILVGGAIVLGTAAAPAI |
Ga0137360_104385741 | 3300012361 | Vadose Zone Soil | VETLYFDVLQFLYHLALAILVGGAIVLGAAAAPAIFASVRSRGEAGAIFGAVL |
Ga0137361_110741772 | 3300012362 | Vadose Zone Soil | VETLSFDLLQFLYHLALAILVGGSLVLGTAVAPALFASSRTSADAD |
Ga0137390_109955931 | 3300012363 | Vadose Zone Soil | VETLSFDLLQFLYHLALAILVGGSLVLGTAVAPALFASTRSRGDAGTLFGNVLARFDGLALFS |
Ga0137373_103874271 | 3300012532 | Vadose Zone Soil | METLYFDALQFLYHLALAILVGGAIVLGTAAAPAIFASIRSRGEAGAIFGAVLGRY |
Ga0137396_111019921 | 3300012918 | Vadose Zone Soil | MLGRRVETLYFDLLQFLYHLALAVLVGGTLLLGTAVAP |
Ga0137419_109489172 | 3300012925 | Vadose Zone Soil | VETLSFDLLQFLYHLALTILVGGSLVLGAAVAPALFASSPSRADAGTLFGNILARFDGL |
Ga0137419_111466872 | 3300012925 | Vadose Zone Soil | VETLSFDLLQFVYHLALAILVGGSLVLGTAVAPALFTTARSRADAGTLFGSVLG |
Ga0137416_121382202 | 3300012927 | Vadose Zone Soil | VETLSFDLLQFVYHLALAILVAGSLVLGTAVAPALFTTARSRA |
Ga0134087_103297481 | 3300012977 | Grasslands Soil | VETLSFDLLQFLYHLALAILVGGSLVLGTAVAPALFGSAGSRGAAGTL |
Ga0120173_10005475 | 3300014031 | Permafrost | VETLYFDGLQFLYHLAIALIVGGAIVLGSAVAPAVFT |
Ga0134081_100826332 | 3300014150 | Grasslands Soil | VETLYFDVLQFLYHLALAILVGGAVVLGAAAAPAIFASVRSRGEAGAIFG |
Ga0134078_104633572 | 3300014157 | Grasslands Soil | VETLSFDLLQFLYHLALAILVGGSLVLGTAVAPALFAASRTSA |
Ga0137418_103489391 | 3300015241 | Vadose Zone Soil | METIYFDTLQFLYHFALAILVGGALVLGAAAAPAIFATV |
Ga0134089_101399241 | 3300015358 | Grasslands Soil | METLYFDVLQFLYHLALAILVGGAIVLGTAAAPAIFASIRSRGEAGAVF |
Ga0132257_1021484781 | 3300015373 | Arabidopsis Rhizosphere | VETLYFDIVQFLYHLALAILVGGGLVLGAAAAPAIFKTVPSRGEAGSIFGNVLAR |
Ga0134112_100915712 | 3300017656 | Grasslands Soil | VETLSFDLLQFLYHLALAILVGGSLVLGTAVAPALFTSARSRADAGTLFGTVLARFDGLAIF |
Ga0134112_103660422 | 3300017656 | Grasslands Soil | MLGSGVETLYFDVLQFLYHLALAVIVGGSLVLGAAVAPAVFATAR |
Ga0134083_101952532 | 3300017659 | Grasslands Soil | VETLSFDLLQFLYHLALAILVGGSLVLGTAVAPALFT |
Ga0184619_103202742 | 3300018061 | Groundwater Sediment | VETLYFDVLQFVYHLALAILVGGAVVLGLAAAPAIFASVSSRGEAGTIFGAILGRY |
Ga0184617_12227341 | 3300018066 | Groundwater Sediment | VETLSFDLLQFLYHLALAILVGGSLVLGTAVAPALFAASRSRADAGTLFGNVLARF |
Ga0184633_104915061 | 3300018077 | Groundwater Sediment | VETLYFDVLQFVYHLALAILVAGALVLGAAAAPAIFASV |
Ga0184639_105220382 | 3300018082 | Groundwater Sediment | VETLYFDVLQFVYHLALAILVGGALVLGAAAAPAIFVSVRS |
Ga0066667_118960862 | 3300018433 | Grasslands Soil | VESLSFDLLQFLYHLSLAILVGGSLVLGTAVAPALFASRSRADAGTLFGSVLA |
Ga0184643_14807171 | 3300019255 | Groundwater Sediment | VETLYFDALQFVYHLALAILVGGAVVLGLAAAPAIFASVRSRGE |
Ga0193747_10566102 | 3300019885 | Soil | VETLSFDLLQFLYHLALAILVGGSLVLGTAVAPALFATSRSRTDA |
Ga0193755_11244472 | 3300020004 | Soil | MLGFPVETLTFDLLQFLYHLALTILVGGSLVLGTAVAPALFGSSRSRT |
Ga0209642_102115041 | 3300025167 | Soil | VETLYFDVLQFVYHLALAILVGGALVLGAATAPAIFASVRSRGEAG |
Ga0207645_104190281 | 3300025907 | Miscanthus Rhizosphere | VETLYFDALQFVYHLALAILVGGAVVLGLAAAPAIFATVSSRG |
Ga0207662_113670561 | 3300025918 | Switchgrass Rhizosphere | VETLSFDLLQFLYHLALAILVGGSLVLGTAVAPALFASS |
Ga0207657_112960711 | 3300025919 | Corn Rhizosphere | METLYFDTLQFVYHLALAILVGGAVVLGLAAAPAIFASMSSRGEAGTIFGAVLGRYDGL |
Ga0207640_112012361 | 3300025981 | Corn Rhizosphere | VETLSFDLLQFLYHLALAILVGGSLVLGTAVAPALFASSRSRRGK |
Ga0209237_11498501 | 3300026297 | Grasslands Soil | VETLYFDVLQFLYHLALAILVGGALVLGTSVAPALFTTARSPADAGTLFAGVLAGFD |
Ga0209238_12798861 | 3300026301 | Grasslands Soil | VETLYFDLLQFLYHFAVAVLVGGALVLGTAVAPALFRSSRSRAEAG |
Ga0209239_11698671 | 3300026310 | Grasslands Soil | VETLSFDLLQFLYHLALAILVGGSLVLGTAVAPALFTS |
Ga0209470_12588922 | 3300026324 | Soil | VETLSFDLLQFLYHLALAILVGGSLVLGTAVAPAVFASSRASADAGTLFGNVLARFDGLAVFS |
Ga0209267_13144341 | 3300026331 | Soil | VETLYFDLLQFLYHFALVILVGGALVLGAAVAPALFVTARSRAEAGTMFGGV |
Ga0209378_10573044 | 3300026528 | Soil | VETLYFDVLQFLYHLALAILVGGAVVLGAAAAPAIFA |
Ga0209806_10772222 | 3300026529 | Soil | VETLSFDLLQFVYHLALAILVGGSLVLGTAVAPALFTTARSRADAGSLFGSVLAHFDGLAIFSVIA |
Ga0209157_11181682 | 3300026537 | Soil | VETLSFDLLQFLYHLALAILVGGSLVLGTAVAPALFGSAGSRGAAGTLFGSVLA |
Ga0209056_100335791 | 3300026538 | Soil | VETLSFDLLQFLYHLALAILVGGSLVLGTAVAPALFGSAGRRGEAGTLFGSV |
Ga0209056_106182871 | 3300026538 | Soil | VESLSFDLLQFLYHLSLAILVGGSLVLGTAVAPALFASRSRADAGTLFGSVLARF |
Ga0209156_101822081 | 3300026547 | Soil | VETLYFDLLQFLYHFALVILVGGALVLGAAVAPALFVTARSR |
Ga0209474_103381171 | 3300026550 | Soil | VETLSFDLLQFLYHLALAILVGGSLVLGTAVAPALFTSSRS |
Ga0209981_10075001 | 3300027378 | Arabidopsis Thaliana Rhizosphere | VETLYFDALQFLYHLALAILVGGSLVLGAAAAPAIFASVRSRGEAGAIFGA |
Ga0208993_10363312 | 3300027480 | Forest Soil | MMHAVETIYFDTLQFVYHLALAILVGGAVVLGAAAAPAIFASVRSRG |
Ga0209388_10105263 | 3300027655 | Vadose Zone Soil | VETLSFDLLQFLYHLALTILVGGSLVLGTAVAPALFVSSRSRA |
Ga0208989_100919631 | 3300027738 | Forest Soil | VETLSFDLLQFLYHLALAILVGGSLVLGTAVAPALFATSRSRA |
Ga0209074_104719662 | 3300027787 | Agricultural Soil | VESLYFDIVLFIYHLALALIVGGGIVLGSATAPAVFRSVRSRGEA |
Ga0209590_103248361 | 3300027882 | Vadose Zone Soil | VETLYFDVLQFLYHLALAILVGGALVLGTSVAPALFTTARSR |
Ga0137415_103285261 | 3300028536 | Vadose Zone Soil | VEHLYFDTIQFLYHLALAILVGGGLVLGAAVAPAIFRAVRSRGE |
Ga0257175_10804621 | 3300028673 | Soil | VETLSFDLLQFLYHLALAILVGGSLVLGTAVAPALFATNRSRADAGTLFGNVLAR |
Ga0307313_102396851 | 3300028715 | Soil | VETIYFDTLQFVYHLALAILVGGAVVLGAAAAPAIFASVPSRGEAGAIFGAVLGRY |
Ga0307301_100788582 | 3300028719 | Soil | METLYFDALQFVYHLALAILVGGAVVLGLAAAPAIFASVRSRGEAGAIFGAVL |
Ga0307296_104986571 | 3300028819 | Soil | VETLSFDLLQFLYHLALAILVGGSLVLGTAVAPALFATSRSSADAGTLFG |
Ga0307277_103094441 | 3300028881 | Soil | MLGFPVETLTFDLLQFLYHLALTILVGGSLVLGTAVAPALFASSR |
Ga0307277_103992612 | 3300028881 | Soil | VETLSFDLLQFLYHLALAILVGGSLVLGTAVAPALFASSRSRADAGALFG |
Ga0307469_107853332 | 3300031720 | Hardwood Forest Soil | VETLSFDLLQFLYHLALAILVGGSLVLGTAVAPALFTSAR |
Ga0307471_1003054051 | 3300032180 | Hardwood Forest Soil | VETLSFDLLQFLYHLALAILVGGSLVLGTAVAPAL |
Ga0307471_1005048222 | 3300032180 | Hardwood Forest Soil | METLYFDTLQFVYHLALAILVGGAAVLGLAAAPAIFASVTSRGEAGSIFGAVLG |
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