Metagenome Family F083985

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F083985
Family Type	Metagenome
Number of Sequences	112
Average Sequence Length	46 residues
Representative Sequence	MSVAQPRSPGKPGVISELALARAQRNTVVIVDDLFSSRLLLAEI
Number of Associated Samples	100
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	77.68 %
% of genes near scaffold ends (potentially truncated)	99.11 %
% of genes from short scaffolds (< 2000 bps)	91.07 %
Associated GOLD sequencing projects	100
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.28

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (74.107 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (12.500 % of family members)
Environment Ontology (ENVO)	Unclassified (20.536 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (44.643 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 44.44% β-sheet: 0.00% Coil/Unstructured: 55.56%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.28
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.28
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF13411	MerR_1	33.93
PF00216	Bac_DNA_binding	12.50
PF03147	FDX-ACB	4.46
PF00072	Response_reg	0.89
PF03484	B5	0.89
PF00707	IF3_C	0.89
PF07859	Abhydrolase_3	0.89
PF05198	IF3_N	0.89
PF07786	HGSNAT_cat	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	12.50
COG0072	Phenylalanyl-tRNA synthetase beta subunit	Translation, ribosomal structure and biogenesis [J]	5.36
COG0290	Translation initiation factor IF-3	Translation, ribosomal structure and biogenesis [J]	1.79
COG0657	Acetyl esterase/lipase	Lipid transport and metabolism [I]	0.89
COG3503	Uncharacterized membrane protein, DUF1624 family	Function unknown [S]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	74.11 %
Unclassified	root	N/A	25.89 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	74.11 %
Unclassified	root	N/A	25.89 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	74.11 %
Unclassified	root	N/A	25.89 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	61.61 %
Unclassified	root	N/A	25.89 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	39.29 %
Unclassified	root	N/A	25.89 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	9.82 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.89 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	16.96 %
Gammaproteobacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis	7.14 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	1.79 %
Rhodocyclales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales	0.89 %
Magnetococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Magnetococcales	0.89 %
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.89 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	16.96 %
Candidatus Competibacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae	7.14 %
Chromatiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	1.79 %
Nitrosomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae	0.89 %
unclassified Magnetococcales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Magnetococcales → unclassified Magnetococcales	0.89 %
Rhodocyclales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.89 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	16.96 %
Candidatus Contendobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae → Candidatus Contendobacter	7.14 %
Thiocapsa	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa	1.79 %
Nitrosospira	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosospira	0.89 %
Magnetococcales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Magnetococcales → unclassified Magnetococcales → Magnetococcales bacterium	0.89 %
Rhodocyclales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.89 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	16.96 %
Candidatus Contendobacter odensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae → Candidatus Contendobacter → Candidatus Contendobacter odensis	7.14 %
unclassified Thiocapsa	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → unclassified Thiocapsa	1.79 %
Nitrosospira multiformis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosospira → Nitrosospira multiformis	0.89 %
Magnetococcales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Magnetococcales → unclassified Magnetococcales → Magnetococcales bacterium	0.89 %
Rhodocyclales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.89 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	16.96 %
Candidatus Contendobacter odensis Run_B_J11	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae → Candidatus Contendobacter → Candidatus Contendobacter odensis → Candidatus Contendobacter odensis Run_B_J11	7.14 %
Thiocapsa sp. KS1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → unclassified Thiocapsa → Thiocapsa sp. KS1	1.79 %
Nitrosospira multiformis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosospira → Nitrosospira multiformis	0.89 %
Magnetococcales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Magnetococcales → unclassified Magnetococcales → Magnetococcales bacterium	0.89 %
Rhodocyclales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001593\|JGI12635J15846_10808184	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	537	Open in IMG/M
3300005171\|Ga0066677_10145187	All Organisms → cellular organisms → Bacteria	1295	Open in IMG/M
3300005177\|Ga0066690_10305678	Not Available	1075	Open in IMG/M
3300005179\|Ga0066684_10799066	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	624	Open in IMG/M
3300005180\|Ga0066685_10266658	All Organisms → cellular organisms → Bacteria	1182	Open in IMG/M
3300005186\|Ga0066676_11052201	All Organisms → cellular organisms → Bacteria → Proteobacteria	539	Open in IMG/M
3300005332\|Ga0066388_101269043	All Organisms → cellular organisms → Bacteria	1266	Open in IMG/M
3300005343\|Ga0070687_100171881	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1290	Open in IMG/M
3300005345\|Ga0070692_10184496	All Organisms → cellular organisms → Bacteria	1211	Open in IMG/M
3300005353\|Ga0070669_100266078	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1369	Open in IMG/M
3300005355\|Ga0070671_100292449	All Organisms → cellular organisms → Bacteria	1386	Open in IMG/M
3300005355\|Ga0070671_101994097	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	517	Open in IMG/M
3300005445\|Ga0070708_101257964	All Organisms → cellular organisms → Bacteria → Proteobacteria	692	Open in IMG/M
3300005459\|Ga0068867_101290797	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae → Candidatus Contendobacter → Candidatus Contendobacter odensis → Candidatus Contendobacter odensis Run_B_J11	673	Open in IMG/M
3300005471\|Ga0070698_101156900	Not Available	723	Open in IMG/M
3300005471\|Ga0070698_101405746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae → Candidatus Contendobacter → Candidatus Contendobacter odensis → Candidatus Contendobacter odensis Run_B_J11	649	Open in IMG/M
3300005545\|Ga0070695_100950225	All Organisms → cellular organisms → Bacteria	697	Open in IMG/M
3300005548\|Ga0070665_100175952	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2141	Open in IMG/M
3300005549\|Ga0070704_100176002	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1707	Open in IMG/M
3300005553\|Ga0066695_10182332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1313	Open in IMG/M
3300005557\|Ga0066704_11048052	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Magnetococcales → unclassified Magnetococcales → Magnetococcales bacterium	503	Open in IMG/M
3300005561\|Ga0066699_10687391	All Organisms → cellular organisms → Bacteria → Proteobacteria	730	Open in IMG/M
3300005561\|Ga0066699_11083505	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	553	Open in IMG/M
3300005564\|Ga0070664_102158603	All Organisms → cellular organisms → Bacteria → Proteobacteria	528	Open in IMG/M
3300005566\|Ga0066693_10371986	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae → Candidatus Contendobacter → Candidatus Contendobacter odensis → Candidatus Contendobacter odensis Run_B_J11	578	Open in IMG/M
3300005574\|Ga0066694_10147509	All Organisms → cellular organisms → Bacteria	1115	Open in IMG/M
3300005576\|Ga0066708_10069832	All Organisms → cellular organisms → Bacteria → Proteobacteria	2019	Open in IMG/M
3300005615\|Ga0070702_100151849	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1488	Open in IMG/M
3300005764\|Ga0066903_101457647	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1289	Open in IMG/M
3300005764\|Ga0066903_101545599	Not Available	1255	Open in IMG/M
3300005764\|Ga0066903_101751956	All Organisms → cellular organisms → Bacteria	1185	Open in IMG/M
3300005764\|Ga0066903_104815843	All Organisms → cellular organisms → Bacteria → Proteobacteria	717	Open in IMG/M
3300005836\|Ga0074470_10733243	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales	6342	Open in IMG/M
3300006796\|Ga0066665_11169342	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	586	Open in IMG/M
3300006796\|Ga0066665_11256932	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae → Candidatus Contendobacter → Candidatus Contendobacter odensis → Candidatus Contendobacter odensis Run_B_J11	567	Open in IMG/M
3300006806\|Ga0079220_11393041	All Organisms → cellular organisms → Bacteria → Proteobacteria	594	Open in IMG/M
3300009137\|Ga0066709_102653166	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	669	Open in IMG/M
3300009143\|Ga0099792_11212778	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → unclassified Thiocapsa → Thiocapsa sp. KS1	512	Open in IMG/M
3300009147\|Ga0114129_10573221	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1465	Open in IMG/M
3300009148\|Ga0105243_11060839	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	816	Open in IMG/M
3300009156\|Ga0111538_14075314	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	505	Open in IMG/M
3300010304\|Ga0134088_10377086	All Organisms → cellular organisms → Bacteria → Proteobacteria	690	Open in IMG/M
3300010323\|Ga0134086_10128879	Not Available	912	Open in IMG/M
3300010343\|Ga0074044_10921059	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	572	Open in IMG/M
3300010359\|Ga0126376_10393142	All Organisms → cellular organisms → Bacteria	1246	Open in IMG/M
3300010376\|Ga0126381_101713262	Not Available	908	Open in IMG/M
3300010379\|Ga0136449_100992547	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1353	Open in IMG/M
3300010397\|Ga0134124_11400078	Not Available	725	Open in IMG/M
3300012096\|Ga0137389_10601473	Not Available	945	Open in IMG/M
3300012351\|Ga0137386_10326539	All Organisms → cellular organisms → Bacteria → Proteobacteria	1104	Open in IMG/M
3300012354\|Ga0137366_10216146	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1428	Open in IMG/M
3300012355\|Ga0137369_10007129	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	11261	Open in IMG/M
3300012358\|Ga0137368_10024979	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosospira → Nitrosospira multiformis	5544	Open in IMG/M
3300012363\|Ga0137390_11273864	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	681	Open in IMG/M
3300012927\|Ga0137416_10730604	Not Available	871	Open in IMG/M
3300012931\|Ga0153915_12750491	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	575	Open in IMG/M
3300014166\|Ga0134079_10142465	Not Available	959	Open in IMG/M
3300014325\|Ga0163163_11487027	Not Available	739	Open in IMG/M
3300014745\|Ga0157377_10020904	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3435	Open in IMG/M
3300014969\|Ga0157376_12763481	Not Available	531	Open in IMG/M
3300017961\|Ga0187778_10213334	All Organisms → cellular organisms → Bacteria	1232	Open in IMG/M
3300017975\|Ga0187782_10698633	Not Available	782	Open in IMG/M
3300018058\|Ga0187766_10264205	All Organisms → cellular organisms → Bacteria	1105	Open in IMG/M
3300018064\|Ga0187773_10098103	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1440	Open in IMG/M
3300018064\|Ga0187773_11147495	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	519	Open in IMG/M
3300018075\|Ga0184632_10231658	Not Available	810	Open in IMG/M
3300018085\|Ga0187772_10316531	Not Available	1072	Open in IMG/M
3300018433\|Ga0066667_10521955	Not Available	981	Open in IMG/M
3300018468\|Ga0066662_12952397	All Organisms → cellular organisms → Bacteria → Proteobacteria	505	Open in IMG/M
3300019881\|Ga0193707_1110301	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	812	Open in IMG/M
3300021344\|Ga0193719_10456514	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae → Candidatus Contendobacter → Candidatus Contendobacter odensis → Candidatus Contendobacter odensis Run_B_J11	519	Open in IMG/M
3300021432\|Ga0210384_11279190	Not Available	638	Open in IMG/M
3300026550\|Ga0209474_10161735	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1451	Open in IMG/M
3300027587\|Ga0209220_1116099	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	699	Open in IMG/M
3300027660\|Ga0209736_1197237	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae → Candidatus Contendobacter → Candidatus Contendobacter odensis → Candidatus Contendobacter odensis Run_B_J11	523	Open in IMG/M
3300027715\|Ga0208665_10236036	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	575	Open in IMG/M
3300027727\|Ga0209328_10250369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae → Candidatus Contendobacter → Candidatus Contendobacter odensis → Candidatus Contendobacter odensis Run_B_J11	529	Open in IMG/M
3300027829\|Ga0209773_10367390	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	599	Open in IMG/M
3300027885\|Ga0209450_10252935	Not Available	1261	Open in IMG/M
3300027979\|Ga0209705_10004501	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	7474	Open in IMG/M
3300028380\|Ga0268265_12592297	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	513	Open in IMG/M
3300028743\|Ga0302262_10103045	Not Available	979	Open in IMG/M
3300029989\|Ga0311365_10192413	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1756	Open in IMG/M
3300029989\|Ga0311365_11119520	Not Available	679	Open in IMG/M
3300031057\|Ga0170834_107748889	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	625	Open in IMG/M
3300031232\|Ga0302323_101312095	Not Available	811	Open in IMG/M
3300031668\|Ga0318542_10079292	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1553	Open in IMG/M
3300031720\|Ga0307469_10390487	All Organisms → cellular organisms → Bacteria	1184	Open in IMG/M
3300031740\|Ga0307468_100022080	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2837	Open in IMG/M
3300031779\|Ga0318566_10084511	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1546	Open in IMG/M
3300031820\|Ga0307473_10149033	All Organisms → cellular organisms → Bacteria	1327	Open in IMG/M
3300031835\|Ga0318517_10075737	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1450	Open in IMG/M
3300031846\|Ga0318512_10445765	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M
3300031918\|Ga0311367_11886725	Not Available	579	Open in IMG/M
3300031954\|Ga0306926_12081431	Not Available	636	Open in IMG/M
3300032018\|Ga0315272_10699380	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	516	Open in IMG/M
3300032059\|Ga0318533_10884357	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	655	Open in IMG/M
3300032074\|Ga0308173_11949258	Not Available	554	Open in IMG/M
3300032076\|Ga0306924_12281618	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	549	Open in IMG/M
3300032174\|Ga0307470_10047342	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2177	Open in IMG/M
3300032174\|Ga0307470_10449531	All Organisms → cellular organisms → Bacteria → Proteobacteria	926	Open in IMG/M
3300032177\|Ga0315276_11262606	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → unclassified Thiocapsa → Thiocapsa sp. KS1	776	Open in IMG/M
3300032180\|Ga0307471_101260691	Not Available	902	Open in IMG/M
3300032205\|Ga0307472_100964524	Not Available	795	Open in IMG/M
3300032256\|Ga0315271_10078494	All Organisms → cellular organisms → Bacteria → Proteobacteria	2461	Open in IMG/M
3300032256\|Ga0315271_11633635	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	554	Open in IMG/M
3300032256\|Ga0315271_11724942	All Organisms → cellular organisms → Bacteria → Proteobacteria	538	Open in IMG/M
3300032275\|Ga0315270_11049347	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae → Candidatus Contendobacter → Candidatus Contendobacter odensis → Candidatus Contendobacter odensis Run_B_J11	541	Open in IMG/M
3300032770\|Ga0335085_11217382	Not Available	799	Open in IMG/M
3300033414\|Ga0316619_11229219	Not Available	662	Open in IMG/M
3300034169\|Ga0370480_0141212	Not Available	825	Open in IMG/M
3300034176\|Ga0364931_0166788	Not Available	713	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	88.39%
Host-Associated	Host-Associated	11.61%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	77.68%
Plants	Host-Associated → Plants	11.61%
Aquatic	Environmental → Aquatic	10.71%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	71.43%
Freshwater	Environmental → Aquatic → Freshwater	8.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere	8.93%
Peat	Environmental → Terrestrial → Peat	4.46%
Sediment	Environmental → Aquatic → Sediment	1.79%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.79%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.89%
Floodplain	Environmental → Terrestrial → Floodplain	0.89%
Roots	Host-Associated → Plants → Roots	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	46.43%
Loam	Environmental → Terrestrial → Soil → Loam	16.07%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.93%
Lake	Environmental → Aquatic → Freshwater → Lake	5.36%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	4.46%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.46%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.46%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.79%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.79%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.79%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.89%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.89%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	0.89%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.89%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.18%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	15.18%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	14.29%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	8.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.04%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.14%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	5.36%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	4.46%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.46%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.46%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.79%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.89%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.89%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.89%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.89%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.89%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.89%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.89%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	0.89%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.89%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	12.50%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.14%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.25%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.25%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	5.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.36%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	5.36%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.46%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	4.46%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.57%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.57%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.68%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.79%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.79%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.79%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.79%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.89%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.89%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.89%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.89%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.89%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.89%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.89%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.89%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.89%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.89%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.89%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	0.89%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005836	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019881	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300027587	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3 (SPAdes)	Environmental	Open in IMG/M
3300027660	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027715	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Methanogen_OWC (SPAdes)	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027829	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027885	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - LWP11 LW (SPAdes)	Environmental	Open in IMG/M
3300027979	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028743	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_E3_4	Environmental	Open in IMG/M
3300029989	III_Fen_N1 coassembly	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031232	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031918	III_Fen_N3 coassembly	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032018	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_middle	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032177	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_0	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032256	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_top	Environmental	Open in IMG/M
3300032275	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_bottom	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300033414	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D4_B	Environmental	Open in IMG/M
3300034169	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_02D_15	Environmental	Open in IMG/M
3300034176	Sediment microbial communities from East River floodplain, Colorado, United States - 21_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12635J15846_108081841	3300001593	Forest Soil	MRAAHPRNPGKSAVVSELAHARAQRNTVLIIDDLFSSRLLLAEIVRQIDGKLNLELF
Ga0066677_101451871	3300005171	Soil	MRAVHPRNIGKSAVVSELAQARAQRNTVLIIDDLFSSRLLLAEIVRQIDGKLNLE
Ga0066690_103056784	3300005177	Soil	MRAVHPRNIGKSAVVSELAQARAQRNTVLIIDDLFSSRLLLAEIVRQIDGK
Ga0066684_107990661	3300005179	Soil	MSLAQRTSGKGIISELALARAQRNTVVIVDDLFSSRLLLAEIVRQIDGRL
Ga0066685_102666584	3300005180	Soil	MSLAQSRTPGKSGGVGVISELALARAQRNTVLIIDDLFSSRLLIAEIVRQIDGKLNLE
Ga0066676_110522011	3300005186	Soil	MAAAQPRFSPHTVGVGSVSELALARAQRNTVLIIDDLFSSRLLLAEIVRQID
Ga0066388_1012690431	3300005332	Tropical Forest Soil	MSVAHHRHTEKTGVVAELALARAQRNTVVIIDDLFSSRLLLAEIVRQIDGKLNL
Ga0070687_1001718815	3300005343	Switchgrass Rhizosphere	MTSAQQRPNHKSPVVSELAMARAQRNTVMIIDDLFSSRLLLAEIVRQIDG
Ga0070692_101844961	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MTSAQQRPNHKSPVVSELAMARAQRNTVMIIDDLFSSRLLLAEIVRQIDGKLNLELF
Ga0070669_1002660785	3300005353	Switchgrass Rhizosphere	MTSAQQRPNHKSPVVSELAMARAQRNTVMIIDDLFSSRLLLAEIVRQIDGKLNL
Ga0070671_1002924491	3300005355	Switchgrass Rhizosphere	MSALPSRPTQGTGVISELALARAQRNTVLIVDDLFSSRLLIAEIVRQ
Ga0070671_1019940971	3300005355	Switchgrass Rhizosphere	MSALQSRPAPNTGVISELALARAQRNTVLIIDDLFSSRLLLAEIVRQIDP
Ga0070708_1012579643	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VSAAQTRNPGKSAVVSELALARAQRNTVMIIDDLFSSRLLLAEIVRQIDGKLNL
Ga0068867_1012907973	3300005459	Miscanthus Rhizosphere	MSALPFRSKPSTGVISELALARAQRNTVLIIDDLFSSRLLIAEIV
Ga0070698_1011569003	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MSLAQRTGKSGVIAELALARAQRNTVVIVDDLFSSRLLLAEIVRQIDGKL
Ga0070698_1014057462	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MNAAQARPTGVISELALARAQRNTVLIIDDLFSSRLLLAE
Ga0070695_1009502252	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MSLAKRSTGKGIISELALARAQRNTVVIIDDLFSSRLLLAEIVRQIDGKLNL
Ga0070665_1001759525	3300005548	Switchgrass Rhizosphere	MSALQSRPAPNTGVISELALARAQRNTVLIIDDLFSSRLLLAEIV
Ga0070704_1001760025	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MSPLQSRSAPGTGVISELALARAQRNTVLIVDDLFSSRLLI
Ga0066695_101823321	3300005553	Soil	MSVAQRSSGKGIISELALARAQRNTVVIVDDLFSSRLLLAEIVRQIDGKLN
Ga0066704_110480521	3300005557	Soil	MSLAQRTGKSGVIAELALARAQRNTVVIVDDLFSS
Ga0066699_106873911	3300005561	Soil	MRAANPRNIGKSAVVSELAQARAQRNTVLIIDDLFSSRLLLAEIVRQIDGKLNLELFD
Ga0066699_110835051	3300005561	Soil	MSLAQRTGKSGVIAELALARAQRNTVVIVDDLFSSRLLLAEIVRQIDGKLNLE
Ga0070664_1021586031	3300005564	Corn Rhizosphere	MTSAQQHKSPVVSELAMARAQRNTVMIIDDLFSSRLLLA
Ga0066693_103719861	3300005566	Soil	MSAAQSRSPAKSTVVSELAMARAQRNTVLIIDDLFSS
Ga0066694_101475094	3300005574	Soil	MRAVHPRNIGKSAVVSELAQARAQRNTVLIIDDLFSSRLLLAEIVR
Ga0066708_100698325	3300005576	Soil	MSLAQRTGKSGVIAELALARAQRNTVVIVDDLFSSRLLLAEIVRQIDGKLNLEL
Ga0070702_1001518496	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MSPLQSRSAPGTGVISELALARAQRNTVLIVDDLFSSRLLIAEIVRQIDPK
Ga0066903_1014576475	3300005764	Tropical Forest Soil	MSAPQTRAAPKNAVISELALARAQRNTVLIIDDLFSSRLLLAEIVRQID
Ga0066903_1015455991	3300005764	Tropical Forest Soil	MIAAQQPRPSGVISELALARAQRNTVLIIDDLFSSR
Ga0066903_1017519561	3300005764	Tropical Forest Soil	MSVAHHRHTEKTGVVAELALARAQRNTVVIIDDLFSSRLLLAEIVRQIDGKLNLELFD
Ga0066903_1048158433	3300005764	Tropical Forest Soil	MSAVPFRSKPSTGVISELALARAQRNTVLIVDDLFSSRLLIAEIVR
Ga0074470_1073324310	3300005836	Sediment (Intertidal)	MSALQSRPKPGMGVISELALARAQRNTVLIIDDLFSSRLLIAEIV
Ga0066665_111693421	3300006796	Soil	MSLAQRTSGKGIISELALARAQRNTVVIVDDLFSSRLLLAEIV
Ga0066665_112569321	3300006796	Soil	MNAVHAPRPMGVISELALARAQRNTVLIIDDLFSSRLLLAEIVRQ
Ga0079220_113930413	3300006806	Agricultural Soil	MTSAHQRSSGKNPVVSELAMARAQRNTVMVIDDLFSSRLLL
Ga0066709_1026531661	3300009137	Grasslands Soil	MSVPQPRNPGKAGGVISELALARAQRNTVVIVDDLFSSRLLLAEIVRQIDGKLNLE
Ga0099792_112127781	3300009143	Vadose Zone Soil	MSAAQSRSPGKTAVVSELALARAQRNTVLIVDDLFSSRL
Ga0114129_105732215	3300009147	Populus Rhizosphere	MSLAQRSSGKGIISELALARAQRNTVVIVDDLFSSRLLLAEIVRQ
Ga0105243_110608393	3300009148	Miscanthus Rhizosphere	MSPLQSRSAPGTGVISELALARAQRNTVLIVDDLFSSRLLIAEIVRQIDP
Ga0111538_140753141	3300009156	Populus Rhizosphere	MSPAQPRPASASGVVSELAFARAQRNTVMIVDDLFSSRLLLAEIV
Ga0134088_103770862	3300010304	Grasslands Soil	MSLAQSRTPGKSGGVGVISDLALARAQRNAVLIIDDLFSSRLLIAEIVRQIDGKLNLE
Ga0134086_101288791	3300010323	Grasslands Soil	VDLRRKFFAMSVAQRSSGKGIISELALARAQRNTVVIVDDLFSSRL
Ga0074044_109210593	3300010343	Bog Forest Soil	MSLAQSRNAGKPGVISELALARAQRNTVVIVDDLFS
Ga0126376_103931421	3300010359	Tropical Forest Soil	MSAPQTRAAPKNAVISELALARAQRNTVLIIDDLFSSRLLLAEIVRQIDGK
Ga0126381_1017132623	3300010376	Tropical Forest Soil	MNTAQQRAPGKPGVISELALARAQRNTVVIIDDLFSSRLLLAE
Ga0136449_1009925471	3300010379	Peatlands Soil	MSLASSRTPGKSGVISELALARAQRNTVVIVDDLFSSRL
Ga0134124_114000781	3300010397	Terrestrial Soil	MSALPSRPAQATGVISELALARAQRNTVLIVDDLFSSRLL
Ga0137389_106014734	3300012096	Vadose Zone Soil	MRAAHPRNPGKSAVVSELAHARAQRNTVMIIDDLFSSRLLLAEI
Ga0137386_103265394	3300012351	Vadose Zone Soil	MSLAQRTGKSGVIAELALARAQRNTVVIIDDLFSSRLLLAEIVRQID
Ga0137366_102161461	3300012354	Vadose Zone Soil	MSLPQRAGKSGVIAELALARAQRNTVVIVDDLFSSRLLLAEIVR
Ga0137369_1000712915	3300012355	Vadose Zone Soil	MSAQPRPVANSGTVSEIALARAQRNTVLIIDDLFSSRLLLAEIVRQIDGKL
Ga0137368_100249791	3300012358	Vadose Zone Soil	MSLAQRSSGKGVISELALARAQRNTVVIVDDLFSSRLLLA
Ga0137390_112738641	3300012363	Vadose Zone Soil	MSLAQRTGKSGVIAELALARAQRNTVVIVDDLFSSRLLLAE
Ga0137416_107306041	3300012927	Vadose Zone Soil	MRAANPRNIGKSAVVSELAQARAQRNTVLIIDDLFSSRLLL
Ga0153915_127504914	3300012931	Freshwater Wetlands	MNVAHRNPGRAGVISELALARAQRNTVVIIDDLFSSRLLLAEIVRQ
Ga0134079_101424651	3300014166	Grasslands Soil	MSLAQRTSGKGIISELALARAQRNTVVIVDDLFSSRLLLAEIVRQIDGRLNLE
Ga0163163_114870271	3300014325	Switchgrass Rhizosphere	MSALPFRSKPSTGVISELALARAQRNTVLIIDDLFS
Ga0157377_100209045	3300014745	Miscanthus Rhizosphere	MTSAQQRPIHKSPVVSELAMARAQRNTVMIIDDLFSSRLLLA
Ga0157376_127634811	3300014969	Miscanthus Rhizosphere	MANAQLRSASGGGNVISELALARAQRNTVLIVDDLFSSRL
Ga0187778_102133341	3300017961	Tropical Peatland	MSTAQQRAPGKPGVISELALARAQRNTVVIIDDLFSSRLLL
Ga0187782_106986331	3300017975	Tropical Peatland	MNLAQSRSFGSPGVISELALARAQRNTVVIIDDLFSSRLL
Ga0187766_102642054	3300018058	Tropical Peatland	MSTAQQRTPGKPGVISELALARAQRNTVVIIDDLF
Ga0187773_100981031	3300018064	Tropical Peatland	MSVAHHRHAEKTGVVAELALARAQRNTVVIIDDLFS
Ga0187773_111474951	3300018064	Tropical Peatland	MILAHRSPAKAGVAELALARAQRNTVVIVDDLFSSRLLLAEIVRQIDGKLNLEL
Ga0184632_102316583	3300018075	Groundwater Sediment	VSAAQTRNPGKSAVVSELALARAQRNTVMIIDDLFSSRLLLAEIVRQID
Ga0187772_103165314	3300018085	Tropical Peatland	MNLAQSRSFGSPGVISELALARAQRNTVVIIDDLFSSRLLLAEIVRQIDGKLNLELF
Ga0066667_105219554	3300018433	Grasslands Soil	MRAANPRNIGKSAVVSELAQARPHRNAVLSIDDLLS
Ga0066662_129523973	3300018468	Grasslands Soil	MRAANPRNIGKSAVVSELAQARAQRNTVLIIDDLFSSRLLLAEIV
Ga0193707_11103012	3300019881	Soil	MRAAHPRNPGKSAVVSELAHARAQRNTVLIIDDLFSKLSARSTAN
Ga0193719_104565141	3300021344	Soil	VSAAQTRNPGKSAVVSELALARAQRNTVMIIDDLFSS
Ga0210384_112791903	3300021432	Soil	MRAAHPRNPGKSAVVSELAHARAQRNTVLIIDDLFSSRLLLAEIVRQ
Ga0209474_101617355	3300026550	Soil	MRAVHPRNIGKSAVVSELAQARAQRNTVLIIDDLFSSRLLLAEIVRQI
Ga0209220_11160993	3300027587	Forest Soil	MSLAQRSSGKSGIISELALARAQRNTVVIIDDLFSSRLLLAEIVRQIDGKLN
Ga0209736_11972373	3300027660	Forest Soil	MRAAHPRNPGKSAVVSELAHARAQRNTVLIIDDLFSSRLL
Ga0208665_102360361	3300027715	Deep Subsurface	MIAAQPRPTGVISELALARAQRNTVLIIDDLFSSRLLLAEIVRQIDGKLNL
Ga0209328_102503692	3300027727	Forest Soil	MRAAHPRNPGKSAVVSELAQARAQRNTVLIIDDLFSSRLLLAEIVRQI
Ga0209773_103673901	3300027829	Bog Forest Soil	MSLAQSRNPGKPGVISELALARAQRNTVVIVDDLFSSRLLLAE
Ga0209450_102529351	3300027885	Freshwater Lake Sediment	MTPPTPLRTAPSPGTVSELAFARAQRNTVLIVDDLFSSRLLLAEIVRQIDG
Ga0209705_100045011	3300027979	Freshwater Sediment	MSPARPRATPTPAIISEIAFVRAQRNTVIIVDDLFSSRLLLAEIVRQ
Ga0268265_125922971	3300028380	Switchgrass Rhizosphere	MSAAQPRPAAASGVVSELAFARAQRNTVLIVDDLFSSRLLLAEIVRQI
Ga0302262_101030454	3300028743	Fen	MSAAQAKPTGKNAVISELALARAQRNTVLIIDDLFSSRLLLA
Ga0311365_101924135	3300029989	Fen	MSAAQAPRPTGVISELALARAQRNTVLIIDDLFSSRLLLAEI
Ga0311365_111195201	3300029989	Fen	MSVLQPRQATSTGVISELALARAPRNTILIIDDLFSSRLLIAEIV
Ga0170834_1077488893	3300031057	Forest Soil	MSVASARAPGKPGDVSELAHARAQRNTVLIVDDLFSSRLLLAEIVRQIDGKLNLELF
Ga0302323_1013120951	3300031232	Fen	MSAAQAKPTGKNAVISELALARAQRNTVLIIDDLFSSRLLLAEI
Ga0318542_100792921	3300031668	Soil	MSTAQQRAPGKPGVISELALARAQRNTVVIVDDLFSSRLLL
Ga0307469_103904871	3300031720	Hardwood Forest Soil	MARSPGEFHMSAVPFRSKPNTGVISELALARAQRNTVLIVDDLFSSRLLIA
Ga0307468_1000220801	3300031740	Hardwood Forest Soil	MSVAQPRSPGKPGVISELALARAQRNTVVIVDDLFSSRLLLAEIVRQIDGKLNLE
Ga0318566_100845111	3300031779	Soil	MSTAQQRAPGKPGVISELALARAQRNTVVIVDDLFSSRLLLAEIVRQI
Ga0307473_101490331	3300031820	Hardwood Forest Soil	MSTAQQRTPAKPGVISELALARAQRNTVVIIDDLFSSRLLLA
Ga0318517_100757375	3300031835	Soil	MSTAQQRAPGKPGVISELALARAQRNTVVIVDDLFSSRLLLAEIVRQIDGKLNLE
Ga0318512_104457653	3300031846	Soil	MSTAQQRAPGKPGVISELALARAQRNTVVIVDDLFSSR
Ga0311367_118867252	3300031918	Fen	MAVAQPRSAGGGSSVISELALARAQKNTVVIVDDLF
Ga0306926_120814311	3300031954	Soil	MSASQTRGATKNAVISELALARAQRNTVLIIDDLFSSRL
Ga0315272_106993801	3300032018	Sediment	MAVVQPRSTSGGGSAVSELALARAQRNTVVIVDDLFSSRLL
Ga0318533_108843573	3300032059	Soil	MNTAQQRAPGKPGVISELALARAQRNTVVIIDDLFSSRLLLAEIVRQID
Ga0308173_119492582	3300032074	Soil	MTAVHLRSENQNNGTISELALARAQRNTVLIVDDLFS
Ga0306924_122816181	3300032076	Soil	MSTAQQKAPGKPGVISELALARAQRNTVVIIDDLFSSRLLLAE
Ga0307470_100473421	3300032174	Hardwood Forest Soil	MSTAQQRTPAKPGVISELALARAQRNTVVIIDDLFSSRLLLAEIVRQI
Ga0307470_104495311	3300032174	Hardwood Forest Soil	MSAPQPRTLGKNSVISELAMARAQRNTVLIIDDLFSSRLLLAEIV
Ga0315276_112626063	3300032177	Sediment	MSALSSRSSPNSGVISELALARAQRNTVLIIDDLF
Ga0307471_1012606911	3300032180	Hardwood Forest Soil	MSVAQPRSPGKPGVISELALASAQRNTVVIVDDQFSRRLLLAEIVRQIDG
Ga0307472_1009645241	3300032205	Hardwood Forest Soil	MSVAQTRSPAKPGVISELALARAQRNTVVIVDDLFSSRLLLAEIVRQIDGKLNL
Ga0315271_100784943	3300032256	Sediment	MAVAQPRSASGGGNVISELALARAQRNTVVIVDDLFSSR
Ga0315271_116336353	3300032256	Sediment	MSALPSRSAPNSGVISELALARAQRNTVLIIDDLFSSR
Ga0315271_117249421	3300032256	Sediment	MSALPSRSAPSTGVISELALARAQRNTILIIDDLFISRLLIAEIVRQIDPKL
Ga0315270_110493471	3300032275	Sediment	MSALPSRSAPSTGVISELALARAQRNTILIIDDLFSSRLLIAEIV
Ga0335085_112173821	3300032770	Soil	MSTAQQRAPGKPGVISELALARAQRNTVVIIDDLFSSRLLLA
Ga0316619_112292191	3300033414	Soil	MAGAQPRSAGGASGVISELALARAQRNTVLIIDDLFS
Ga0370480_0141212_3_152	3300034169	Untreated Peat Soil	MSAAQARASGSNGVISDLALVRAQRNTILIIDDLFSSRLLLAEIVRQIDS
Ga0364931_0166788_1_132	3300034176	Sediment	MSVAQPRSPGKPGVISELALARAQRNTVVIVDDLFSSRLLLAEI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F083985

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences