Metagenome / Metatranscriptome Family F083868

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F083868
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	68 residues
Representative Sequence	VASETITIRFPSGAWEYAVTERVPEVGDTLVREGETWNVALVAESVDDHRVVIMALPSEVEKES
Number of Associated Samples	86
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	75.00 %
% of genes near scaffold ends (potentially truncated)	37.50 %
% of genes from short scaffolds (< 2000 bps)	90.18 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.71

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (68.750 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (44.643 % of family members)
Environment Ontology (ENVO)	Unclassified (47.321 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (37.500 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 32.61% Coil/Unstructured: 67.39%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.71
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.71
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SCOP family	SCOP domain	Representative PDB	TM-score
b.168.1.1: HisI-like	d1zpsa1	1zps	0.68
b.168.1.1: HisI-like	d1zpsa1	1zps	0.68
d.15.2.2: CAD & PB1 domains	d1wmhb_	1wmh	0.63
d.113.1.0: Nudix	d3gwya1	3gwy	0.63
d.15.1.0: Ubiquitin-like	d3zdmc_	3zdm	0.63
d.15.1.0: Ubiquitin-like	d4x57b_	4x57	0.63
d.15.2.2: CAD & PB1 domains	d1wmhb_	1wmh	0.63
d.113.1.0: Nudix	d3gwya1	3gwy	0.63
d.15.1.0: Ubiquitin-like	d3zdmc_	3zdm	0.63
d.15.1.0: Ubiquitin-like	d4x57b_	4x57	0.63

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF01152	Bac_globin	2.68
PF10604	Polyketide_cyc2	2.68
PF07978	NIPSNAP	1.79
PF14329	DUF4386	1.79
PF00501	AMP-binding	0.89
PF03795	YCII	0.89
PF05866	RusA	0.89
PF13466	STAS_2	0.89
PF04545	Sigma70_r4	0.89
PF03584	Herpes_ICP4_N	0.89
PF07931	CPT	0.89
PF07366	SnoaL	0.89
PF10646	Germane	0.89
PF08352	oligo_HPY	0.89
PF04542	Sigma70_r2	0.89
PF01230	HIT	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG2346	Truncated hemoglobin YjbI	Inorganic ion transport and metabolism [P]	2.68
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.89
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.89
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.89
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.89
COG3896	Chloramphenicol 3-O-phosphotransferase	Defense mechanisms [V]	0.89
COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	Replication, recombination and repair [L]	0.89
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.89

NCBI Taxonomy

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Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	68.75 %
Unclassified	root	N/A	31.25 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	68.75 %
Unclassified	root	N/A	31.25 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	68.75 %
Unclassified	root	N/A	31.25 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	58.93 %
Unclassified	root	N/A	31.25 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.79 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	55.36 %
Unclassified	root	N/A	31.25 %
Armatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes	0.89 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	49.11 %
Unclassified	root	N/A	31.25 %
unclassified Armatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes	0.89 %
unclassified Actinobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria	0.89 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	44.64 %
Unclassified	root	N/A	31.25 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	3.57 %
Actinobacteria bacterium RBG_16_67_10	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_16_67_10	0.89 %
Armatimonadetes bacterium CG07_land_8_20_14_0_80_59_28	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium CG07_land_8_20_14_0_80_59_28	0.89 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	44.64 %
Unclassified	root	N/A	31.25 %
Kribbellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae	3.57 %
Actinobacteria bacterium RBG_16_67_10	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_16_67_10	0.89 %
Armatimonadetes bacterium CG07_land_8_20_14_0_80_59_28	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium CG07_land_8_20_14_0_80_59_28	0.89 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	44.64 %
Unclassified	root	N/A	31.25 %
Kribbella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella	3.57 %
Actinobacteria bacterium RBG_16_67_10	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_16_67_10	0.89 %
Armatimonadetes bacterium CG07_land_8_20_14_0_80_59_28	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium CG07_land_8_20_14_0_80_59_28	0.89 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	44.64 %
Unclassified	root	N/A	31.25 %
Kribbella soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → Kribbella soli	3.57 %
Actinobacteria bacterium RBG_16_67_10	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_16_67_10	0.89 %
Armatimonadetes bacterium CG07_land_8_20_14_0_80_59_28	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium CG07_land_8_20_14_0_80_59_28	0.89 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000891\|JGI10214J12806_12676157	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	567	Open in IMG/M
3300000956\|JGI10216J12902_107735803	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	730	Open in IMG/M
3300000956\|JGI10216J12902_109942670	Not Available	782	Open in IMG/M
3300004114\|Ga0062593_100057936	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2470	Open in IMG/M
3300004114\|Ga0062593_100816982	All Organisms → cellular organisms → Bacteria	930	Open in IMG/M
3300004114\|Ga0062593_102576606	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium CG07_land_8_20_14_0_80_59_28	577	Open in IMG/M
3300004157\|Ga0062590_101062524	Not Available	776	Open in IMG/M
3300004643\|Ga0062591_100732400	Not Available	900	Open in IMG/M
3300005093\|Ga0062594_101150812	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	764	Open in IMG/M
3300005093\|Ga0062594_103056384	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	523	Open in IMG/M
3300005093\|Ga0062594_103208420	Not Available	513	Open in IMG/M
3300005329\|Ga0070683_101282562	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	704	Open in IMG/M
3300005335\|Ga0070666_11217635	Not Available	561	Open in IMG/M
3300005347\|Ga0070668_101762544	Not Available	569	Open in IMG/M
3300005366\|Ga0070659_101728551	Not Available	560	Open in IMG/M
3300005518\|Ga0070699_100115904	All Organisms → cellular organisms → Bacteria	2354	Open in IMG/M
3300006844\|Ga0075428_101010338	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → Kribbella soli	880	Open in IMG/M
3300006845\|Ga0075421_100508010	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → Kribbella soli	1431	Open in IMG/M
3300006845\|Ga0075421_102210943	Not Available	580	Open in IMG/M
3300006846\|Ga0075430_100655173	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	866	Open in IMG/M
3300006871\|Ga0075434_101208722	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	768	Open in IMG/M
3300006880\|Ga0075429_100713592	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	878	Open in IMG/M
3300006904\|Ga0075424_100477904	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1330	Open in IMG/M
3300009094\|Ga0111539_10140819	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → Kribbella soli	2824	Open in IMG/M
3300009100\|Ga0075418_10490561	Not Available	1318	Open in IMG/M
3300009147\|Ga0114129_11488163	Not Available	832	Open in IMG/M
3300009162\|Ga0075423_10833211	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	976	Open in IMG/M
3300009553\|Ga0105249_11214981	Not Available	825	Open in IMG/M
3300009553\|Ga0105249_12274159	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	615	Open in IMG/M
3300009610\|Ga0105340_1383696	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	625	Open in IMG/M
3300010397\|Ga0134124_11352208	Not Available	737	Open in IMG/M
3300010399\|Ga0134127_12995191	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	551	Open in IMG/M
3300011412\|Ga0137424_1044211	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	792	Open in IMG/M
3300012232\|Ga0137435_1224382	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	573	Open in IMG/M
3300012892\|Ga0157294_10169727	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	621	Open in IMG/M
3300012897\|Ga0157285_10243966	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	586	Open in IMG/M
3300012904\|Ga0157282_10083399	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	861	Open in IMG/M
3300012915\|Ga0157302_10209297	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	705	Open in IMG/M
3300012916\|Ga0157310_10083213	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	996	Open in IMG/M
3300012958\|Ga0164299_10029180	All Organisms → cellular organisms → Bacteria	2376	Open in IMG/M
3300012958\|Ga0164299_10680349	All Organisms → cellular organisms → Bacteria → Proteobacteria	716	Open in IMG/M
3300012960\|Ga0164301_11580088	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	543	Open in IMG/M
3300015077\|Ga0173483_10358915	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	734	Open in IMG/M
3300015077\|Ga0173483_11008108	Not Available	500	Open in IMG/M
3300015200\|Ga0173480_10945525	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	563	Open in IMG/M
3300015201\|Ga0173478_10183759	Not Available	862	Open in IMG/M
3300015201\|Ga0173478_10288801	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	737	Open in IMG/M
3300015371\|Ga0132258_11201941	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1916	Open in IMG/M
3300015372\|Ga0132256_102632937	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	603	Open in IMG/M
3300015373\|Ga0132257_103274324	Not Available	590	Open in IMG/M
3300017965\|Ga0190266_10001230	All Organisms → cellular organisms → Bacteria	4696	Open in IMG/M
3300017965\|Ga0190266_11345101	Not Available	505	Open in IMG/M
3300018067\|Ga0184611_1257257	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	616	Open in IMG/M
3300018072\|Ga0184635_10253714	Not Available	696	Open in IMG/M
3300018074\|Ga0184640_10490399	All Organisms → cellular organisms → Bacteria → Terrabacteria group	542	Open in IMG/M
3300018082\|Ga0184639_10457799	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	652	Open in IMG/M
3300018422\|Ga0190265_10008470	All Organisms → cellular organisms → Bacteria	7538	Open in IMG/M
3300018429\|Ga0190272_10406038	Not Available	1114	Open in IMG/M
3300018432\|Ga0190275_10053483	All Organisms → cellular organisms → Bacteria	3384	Open in IMG/M
3300018466\|Ga0190268_10242988	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1027	Open in IMG/M
3300018466\|Ga0190268_11973080	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	535	Open in IMG/M
3300018469\|Ga0190270_10060395	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2697	Open in IMG/M
3300018469\|Ga0190270_10088478	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2327	Open in IMG/M
3300018469\|Ga0190270_10184954	Not Available	1741	Open in IMG/M
3300018469\|Ga0190270_10339596	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1359	Open in IMG/M
3300018476\|Ga0190274_10835053	Not Available	982	Open in IMG/M
3300018476\|Ga0190274_11208661	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	840	Open in IMG/M
3300018476\|Ga0190274_11231259	All Organisms → cellular organisms → Bacteria → Terrabacteria group	833	Open in IMG/M
3300018481\|Ga0190271_10005163	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	8558	Open in IMG/M
3300018481\|Ga0190271_10839068	Not Available	1043	Open in IMG/M
3300018481\|Ga0190271_11197161	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	882	Open in IMG/M
3300019361\|Ga0173482_10069228	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1202	Open in IMG/M
3300019361\|Ga0173482_10210240	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	803	Open in IMG/M
3300020016\|Ga0193696_1026889	All Organisms → cellular organisms → Bacteria	1542	Open in IMG/M
3300020020\|Ga0193738_1173724	Not Available	555	Open in IMG/M
3300021082\|Ga0210380_10529138	Not Available	540	Open in IMG/M
3300024055\|Ga0247794_10054639	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1103	Open in IMG/M
3300025910\|Ga0207684_10950112	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	721	Open in IMG/M
3300025944\|Ga0207661_11375357	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	648	Open in IMG/M
3300026075\|Ga0207708_11949608	Not Available	514	Open in IMG/M
3300027909\|Ga0209382_10629177	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → Kribbella soli	1164	Open in IMG/M
3300028592\|Ga0247822_11440539	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	581	Open in IMG/M
3300028592\|Ga0247822_11931737	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	506	Open in IMG/M
3300028708\|Ga0307295_10244223	Not Available	516	Open in IMG/M
3300028719\|Ga0307301_10177074	All Organisms → cellular organisms → Bacteria → Terrabacteria group	690	Open in IMG/M
3300028754\|Ga0307297_10358367	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	534	Open in IMG/M
3300028755\|Ga0307316_10195089	Not Available	729	Open in IMG/M
3300028803\|Ga0307281_10097447	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	986	Open in IMG/M
3300028814\|Ga0307302_10205822	Not Available	961	Open in IMG/M
3300030006\|Ga0299907_10060868	All Organisms → cellular organisms → Bacteria	3030	Open in IMG/M
3300030006\|Ga0299907_10447803	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1029	Open in IMG/M
3300030988\|Ga0308183_1093898	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	674	Open in IMG/M
3300030988\|Ga0308183_1203609	Not Available	516	Open in IMG/M
3300030990\|Ga0308178_1172584	Not Available	510	Open in IMG/M
3300031124\|Ga0308151_1038347	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300031170\|Ga0307498_10113843	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	851	Open in IMG/M
3300031170\|Ga0307498_10472047	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	508	Open in IMG/M
3300031226\|Ga0307497_10098416	Not Available	1135	Open in IMG/M
3300031424\|Ga0308179_1050254	Not Available	540	Open in IMG/M
3300031547\|Ga0310887_10934784	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	551	Open in IMG/M
3300031562\|Ga0310886_10386578	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	822	Open in IMG/M
3300031847\|Ga0310907_10419952	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	701	Open in IMG/M
3300031854\|Ga0310904_10971742	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	603	Open in IMG/M
3300031854\|Ga0310904_11330023	Not Available	521	Open in IMG/M
3300031858\|Ga0310892_10320070	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	985	Open in IMG/M
3300031892\|Ga0310893_10584928	Not Available	509	Open in IMG/M
3300031908\|Ga0310900_10267388	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_16_67_10	1240	Open in IMG/M
3300032003\|Ga0310897_10167159	Not Available	937	Open in IMG/M
3300032013\|Ga0310906_10911898	Not Available	627	Open in IMG/M
3300033550\|Ga0247829_10535135	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	972	Open in IMG/M
3300033551\|Ga0247830_10429737	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1031	Open in IMG/M
3300033551\|Ga0247830_10535906	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	923	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	82.14%
Host-Associated	Host-Associated	17.86%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	75.00%
Plants	Host-Associated → Plants	17.86%
Aquatic	Environmental → Aquatic	7.14%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	75.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.07%
Sediment	Environmental → Aquatic → Sediment	6.25%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.79%
Freshwater	Environmental → Aquatic → Freshwater	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	70.54%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.25%
Loam	Environmental → Terrestrial → Soil → Loam	4.46%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.57%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.79%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	46.43%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	13.39%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.50%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	8.04%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.25%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.46%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.57%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.68%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.79%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	44.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	13.39%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	10.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	7.14%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.57%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	2.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.68%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.68%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.79%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.79%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.79%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009610	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011412	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT620_2	Environmental	Open in IMG/M
3300012232	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT100_2	Environmental	Open in IMG/M
3300012892	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1	Environmental	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012904	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S029-104C-1	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012916	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300020016	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m1	Environmental	Open in IMG/M
3300020020	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a1	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300024055	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028754	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028803	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300030988	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_157 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030990	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_149 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031124	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_140 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031424	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_150 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300032003	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10214J12806_126761572	3300000891	Soil	VPSESITIRFPSGAWEYAMTERVPDVGETLLREGKTWVVAGVTDSVDGHRVIAMAATSEAVT*
JGI10216J12902_1077358032	3300000956	Soil	MSAESITIRFPSGNWEYVVTESVPHIGDTLVRGGETWAVRHVAEPVDDHRVVIMEMRPEDGVPLRSDLG*
JGI10216J12902_1099426702	3300000956	Soil	MASETITVRFTSGAWEYAMTERVPELGDTLVRGGKTWSVAAVGASVDHHRVITMALPHEVKKKEPSHATNSARWPRWG*
Ga0062593_1000579364	3300004114	Soil	VSSAESITIRFPSGAWEYVMTERVPALGDTLVRDGQMWVVAGVTDSVDGHRVIAMAATPVVVN*
Ga0062593_1008169823	3300004114	Soil	LLVAHEPITIRFPSGAWEYVVTERVPDVGDTLVRDGKTWTVAGVTGSEDGHR
Ga0062593_1025766061	3300004114	Soil	MASESLTIRFPSGAWEYVMTNRVPDVGDTLVRGGETWTVALVAEQVDDHRVVIMALDSVER*
Ga0062590_1010625242	3300004157	Soil	VESITIRFASGAWEYAVTERVPEVGDTLVRDEETWDVVAVAESVDEHRVIIMALPPEVEKESSHLKASARWPRWA*
Ga0062591_1007324002	3300004643	Soil	GLVTSESLTIRFPSGAWEYVVTNRVPDIGDTLVREGETWTVALVAEPVDDHRVIIMALRPAAT*
Ga0062594_1011508121	3300005093	Soil	MASESLTIRFPSGAWEYVMTNRVPDVGDTLVRGGETWTVALVAEQVDDHRVVIM
Ga0062594_1030563841	3300005093	Soil	VASETITIRFPSGAWEYAVTERVPEVGDTLVREGETWNVALVAESVDDHRVVIMALPSKVEKESSHLKTSARWARWV*
Ga0062594_1032084201	3300005093	Soil	TIRFPSGAWEYVVTERVPDVGDTLVRDGKTWIVAGVTDSVDGHRVVAMAAAPDPVK*
Ga0070683_1012825622	3300005329	Corn Rhizosphere	VASESITIRYPTGAWEYVMTQRVPDVGDTLERNGKRWMVARVTEPRDGHRVVTMTLGPVKK*
Ga0070666_112176353	3300005335	Switchgrass Rhizosphere	LLVAPEPITIRFPSGAWEYVVTERVPDVGDTLVRDGKTWTVAGVTGSEDGHRVITMAPE
Ga0070668_1017625441	3300005347	Switchgrass Rhizosphere	VGSESVTIRFPSGAWEYVVTERVPDLGDTLVRDGKTWIVAGVTDSVDGHRVVAMAAAPDPVK*
Ga0070659_1017285511	3300005366	Corn Rhizosphere	LLVAHEPITIRFPSGAWEYVVTERVPDVGDTLVRDGKTWTVAGVTGSEDGHRVIT
Ga0070699_1001159042	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	VASETITIRFPSGAWEYVMTDRVPSVGDTLVHGGETWSVALVAEPVDDHRVVIMGPPPEVEKPPPRLVANKRWAG*
Ga0075428_1010103381	3300006844	Populus Rhizosphere	SREKGRMASESLTIRYASGAWEYVMTNRVPDVGDTLVREGETWTVALVAEPVDDHRVVIMTLGPVENQRSD*
Ga0075421_1005080103	3300006845	Populus Rhizosphere	QREGRMASESLTIRYASGAWEYVMTNRVPDVGDTLVREGETWTVALVAEPVDDHRVVIMTLGPVENQRSD*
Ga0075421_1022109432	3300006845	Populus Rhizosphere	VVSESVTIRFPSGAWEYVVTERVPDVGDTLVRGGTTWIVAGVTEAVDQHRVITMALLPEVQI*
Ga0075430_1006551732	3300006846	Populus Rhizosphere	VASESITIRFPTGAWEYAVTDRLPDVGDTIVRDGETWAVAHVAEPVDDHRVIIMEPGPVPGK*
Ga0075434_1012087222	3300006871	Populus Rhizosphere	VASESITIRFPSGAWEYAVTERVPELGDTLVRDEKTWVVAAVAASLDDHRVIIMALPPEV
Ga0075429_1007135922	3300006880	Populus Rhizosphere	VASEAITIRFPSGDWEYAVTERVPHVGDTLGRGEETWAVAHVAEPVDNHRVIIMELGPGAER*
Ga0075424_1004779041	3300006904	Populus Rhizosphere	VASESITIRFPSGAWEYAVTERVPELGDTLVRDEKTWVVAAVAESLDDHRVIIMALPPEVEK
Ga0111539_101408192	3300009094	Populus Rhizosphere	MASESLTIRYASGAWEYVMTNRVPDVGDTLVREGETWTVALVAEPVDDHRVVIMTLGPVENQRSD*
Ga0075418_104905613	3300009100	Populus Rhizosphere	VAPETLTIRFPSGAWEYVMTDRVPEVGDTLQREGETWSVALVSESVGDHRVVIMEPRPE
Ga0114129_114881632	3300009147	Populus Rhizosphere	VASETITIRFPSGAWEYVMTDRVPSVGDTLIHEGETWSVALVAESVDDHRVVIMGPRPEVEKPPPRLVANKRWAG*
Ga0075423_108332112	3300009162	Populus Rhizosphere	VASESITIRFPSGAWEYAVTERVPELGDTLVRDEKTWVVAAVAESLDDHRVIIMALPPEVEKESSHLKISARWPRWA*
Ga0105249_112149812	3300009553	Switchgrass Rhizosphere	VASESLTIRFPSGAWEYATTERVPDVGDTLERDGTTWFVAGVTESVDDHRVITMALRLQAEEEPPRLKRPARRVR*
Ga0105249_122741592	3300009553	Switchgrass Rhizosphere	VASETITIRFPSGAWEYAVTERVPEVGDTLVREGETWNVALVAESVDDHRVVIMALPSEVEKESSHLKTSARWARWV*
Ga0105340_13836962	3300009610	Soil	VASESITIRFPSGAWEYAVTERVPEVGDTLVRDEKTWAVAAVAESVDDHRVITMALRPDVEKEPSNLKNSARWASWR*
Ga0134124_113522081	3300010397	Terrestrial Soil	LLVAPEPITIRFPSGAWEYVVTERVPDVGDTLVRDGKTWTVAGVTGSEDGHRVITMAPEV
Ga0134127_129951912	3300010399	Terrestrial Soil	MASESLTIRFPSGAWEYVMTNRVPDVGDTLVRGGETWTVALVAEQVDDHRVVTMALDSVER*
Ga0137424_10442111	3300011412	Soil	VAPESITIRFPSGAWEYAVTERVPELGDTLVRDEETWAVAAVAESVDDHR
Ga0137435_12243822	3300012232	Soil	GGGRTPVASETITIRFPSGAWEYALTERVPELGDTLVREGETWNVALVAESVDDHRVVIMALPPEVEKESSHLKISARWA*
Ga0157294_101697271	3300012892	Soil	VASETITIRFPSGAWEYAVTERVPEVGDTLVRDETTWTVALVAESVDDHRVVIMAVTPEVEKESLHLKNSAR
Ga0157285_102439661	3300012897	Soil	VASESITIRFPSGAWEYVMTQRLPEVGDTLERDGKTWMVARVTESRDGHRVVTMTRSPLGK*
Ga0157282_100833992	3300012904	Soil	VASESITIRFPSGAWEYVMTQRLPEVGDTLERDGKTWMVARVTESRDGHRVVTMTRGPLGK*
Ga0157302_102092972	3300012915	Soil	VASESITIRFPSGAWEYAVTERVPELGDTLVRDEKAWVVAPVTESVDNHRVIIMALPPGAEKESSHLKNSARWPLWL*
Ga0157310_100832131	3300012916	Soil	LFVAPEPITIRFPSGAWEYVMTERVPDAGDTLVRDGKTWTVAGVTESEDGHRVITMAPEV
Ga0164299_100291805	3300012958	Soil	VASESITIRFPSGAWEYALTARVPELGETLVRDEKTWVVAAVAESVDDHRVIIMALPPDVEKESSHLKISARWPRWS*
Ga0164299_106803491	3300012958	Soil	LDVASEPITIRFPSGAWEYVLTERVPDAGDTLVRDGKTWTVAGVTESEDGHRVITMAAEVVKSPT
Ga0164301_115800881	3300012960	Soil	VASESITIRFPSGAWEYAVTERVPELGDTLVRDEKTWVVAAVAESVDDHRVIIMALPPDVEKESSHLKISARWPRWS*
Ga0173483_103589151	3300015077	Soil	VASETITIRFPSGAWEYAVTERVPEVGDTLIREGETWNVALVAESVDDHRVVIMALPSEVEKESSHLKTSARWARWV*
Ga0173483_110081081	3300015077	Soil	VTSESLTIRFPSGAWEYVVTNRVPDIGDTLVREGETWTVALVAEPVDDHRVIIMALRPAAT*
Ga0173480_109455251	3300015200	Soil	VASESITIRFPSGAWEYVMTQRVPDVGDTLERNGKRWMVARVTEPRDGHRVVTMTLGPVKK*
Ga0173478_101837591	3300015201	Soil	LTIRFPSGAWEYVVTNRVPDIGDTLVREGETWTVALVAEPVDDHRVII
Ga0173478_102888012	3300015201	Soil	VASETITIRFPSGAWEYAVTERVPEVGDTLVREGETWNVALVAESVDDHRVVIMALPSKVEKESLHLKTSA
Ga0132258_112019415	3300015371	Arabidopsis Rhizosphere	VASESITIRFPSGAWEYAVTERVPEVGDTLLRDEKTWAVVAVAESVDEHRVIIMGRPPEVEKKFSHVKTISARWPRWR*
Ga0132256_1026329372	3300015372	Arabidopsis Rhizosphere	VASESITIRFPSGAWEYAVTERVPEVGDTLVRDEKTWAVAAVTESVDEHRVIIMALPSEVEKESSHLK
Ga0132257_1032743241	3300015373	Arabidopsis Rhizosphere	LDVASEPITIRFPSGAWEYVLTERVPDAGDTLVRDGKTWTVAGVTESEDGHRVITMAAEV
Ga0190266_100012305	3300017965	Soil	VASETITIRFPSGAWEYAVTERVPEVGDTLVREGETWNVALVAESVDDHRVVIMALPPEVEKESSHLKISTRWARWA
Ga0190266_113451011	3300017965	Soil	MASESITIRFPSRAWEYAMTERVPELGDTLVRDGKTWAVAAVAESVDDHRVITMALPPEVEKGPSHLKNSARWPRWV
Ga0184611_12572572	3300018067	Groundwater Sediment	VASESITIRFPAGAWEYAVTERVPEVGDTLVRDEETWTVAEVGESADDHRVIIMALCPAE
Ga0184635_102537142	3300018072	Groundwater Sediment	VASESITIRYPAGGWEYAVTERVPEVGDTLVRDEETWTVAEVAESADDHRVIIMALRPVE
Ga0184640_104903992	3300018074	Groundwater Sediment	VASESITIRFPSGAWEYAMTERAPAVGDTLLREGETWNVALVAESMDDHRVVIMAPAPEVEKQSSHLKI
Ga0184639_104577992	3300018082	Groundwater Sediment	SETITIRFPSGAWEYAVTERVPEVGDTLVREGETWNVALVAEPVDDHRVVIMALPPEVEKDSSHLKISARWPRWA
Ga0190265_100084704	3300018422	Soil	VVSETITIRFPNGTWEYRVTDRLPEVGDTLVRQGVTWTVVRVTESLDDHRVVTMAAAHEEPAR
Ga0190272_104060383	3300018429	Soil	MISESITVRFTSGAWEYAMTERVPELGDTLVRDGKTWAVAAVGESVDDHRVITMALPPEVEKGPSHLKNSARWPRWG
Ga0190275_100534835	3300018432	Soil	MSAESITIRFPSGNWEYVVTESVPHIGDTLVRGGETWAVRHVAEPVDDHRVVIMEMRPEDGVPLRSDLG
Ga0190268_102429881	3300018466	Soil	VASESITIRFPSRAWEYAMTERVPELGDTLVRDGKTWAVAVVSESVDDHRVITMALPPEVEKESSHLKNSARWPRWV
Ga0190268_119730801	3300018466	Soil	MASESITIRFPTGDWEYAVTERVPHIGDTLVRGEKTWAVRHVAEPVDDHRVVIMELGPGAER
Ga0190270_100603951	3300018469	Soil	VASESITIRFPTGDWEYAVTERVPHIGDTLVRGGETWAVRHVAEPVDDHRVVIMELGPGAER
Ga0190270_100884782	3300018469	Soil	VASESITIRFPSGAWEYVTTERVPDVGDTLVRDGETWAVAHVAEPVDEHRVVIMELGPGTER
Ga0190270_101849545	3300018469	Soil	VASESLTIRFPSGAWEYATTERVPNVGDTLVRDGETWFVARVTESVDDHRVITMAPRAEVEKEPSHLKSSARKDSA
Ga0190270_103395962	3300018469	Soil	VASEAITIRFPTGDWEYAVTERVPYVGDTLVRGGEMWAVAHVAEPVDNHRVVIMELCPGAER
Ga0190274_108350532	3300018476	Soil	MASETITVRFTSGAWEYAMTERVPELGDTLVRGGKTWAVAAVGASVDHHRVITMALPHEVEKKEASQGRNSARWPRWG
Ga0190274_112086614	3300018476	Soil	VASEAITIRFPTGDWEYAVTERVPHIGDTLVRGEETWAVRHVAEPVDDHRVVIMELGPGAEG
Ga0190274_112312591	3300018476	Soil	MASESITIRFPSRAWEYAMTERVPELGDTLVRDGKTWAVAAVAESVDDHRVITMALPPEVERESSHLKNSARWPRWV
Ga0190271_1000516313	3300018481	Soil	VASESLTIRFPSGAWEYATTERVPNVGDTLVRDGETWFVARVTESVDDHRVITMAPRAEVEKEPSHLKSSARKDSARWPRW
Ga0190271_108390682	3300018481	Soil	MTSESITVRFTSGAWEYAVTERVPELGDTLVRDGKTWAVAAVGESVDDHRVITMALPSEVEKEPSHVKNSARWPRWG
Ga0190271_111971613	3300018481	Soil	MASESITIRFPRGDWEYAVTDRVPHVGDTLLRGEETWAVRHVAESVDDHRVVIMEPGPVTER
Ga0173482_100692281	3300019361	Soil	RNAQRRLSVIVSSAESITIRFPSGAWEYVMTERVPALGDTLVRDGQMWVVAGVTDSVDGHRVIAMAATPVVVN
Ga0173482_102102401	3300019361	Soil	VASESITIRYPTGAWEYVMTQRVPDVGDTLERNGKRWMVARVTEPRDGHRVVTMTLGPVK
Ga0193696_10268891	3300020016	Soil	PGRAERRPVASESITIRFPSGAWEYAMTERVPDVGDTLLREGETWNVALVAESMDDHRVVIMAPAPEVEKQSSHLKISARWPRWA
Ga0193738_11737241	3300020020	Soil	MASESITIRFPSGAWEYVMTERVPHVGDTLVRDAETWAVRHVAEPVDDHRVVIMELRPEAER
Ga0210380_105291381	3300021082	Groundwater Sediment	VTSESITIRFPAGPWEYAVTDRVPEVGDTLVRDETTWTVALVAESVDDHRVIIMALPPEVEKKSSHLKNWARWDL
Ga0247794_100546392	3300024055	Soil	LTSRQAEQREKLVASESITIRYPTGAWEYVMTQRVPDVGDTLERNGKRWMVARVTEPRDGHRVVTMTLGPVKK
Ga0207684_109501121	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	VASESITIRFPSGAWEYAVTERVPEVGDTLVRDEKTWAVAAVAESVDEHRVIIMGLPPEIEKESSHLKISKESSHLKISARWPLWL
Ga0207661_113753571	3300025944	Corn Rhizosphere	QREKLVASESITIRYPTGAWEYVMTQRVPDVGDTLERNGKRWMVARVTEPRDGHRVVTMTLGPVKK
Ga0207708_119496081	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MASESLTIRFPSGAWEYVMTNRVPDVGDTLVRGGETWTVALVAEQVDDHRVVIMALDSVE
Ga0209382_106291772	3300027909	Populus Rhizosphere	QREGRMASESLTIRYASGAWEYVMTNRVPDVGDTLVREGETWTVALVAEPVDDHRVVIMTLGPVENQRSD
Ga0247822_114405391	3300028592	Soil	VASETITIRFPSGAWEYAVTERVPEVGDTLVREGETWNVALVAESVDDHRVVIMALPSKVEKESSHLKTSARWARWV
Ga0247822_119317371	3300028592	Soil	VATESITIRFPSGAWEYVVTERVPDVGDTLVRDGKAWIVAGVTESVDGNRVIAMAAAPE
Ga0307295_102442231	3300028708	Soil	VASESITIRFPAGGWEYAVTNRVPEVGDTLVRDEKTWTVRLVAESVDDHRVVIMALPPEVENESSH
Ga0307301_101770742	3300028719	Soil	VASESITIRFPSGAWEYAMTERVPDVGDTLLREGETWNVALVAESMDDHRVVIMAPAPEVEKQSSHLKISARWPRWA
Ga0307297_103583671	3300028754	Soil	VASESITIRFPSGGWEYAVTERVPEVGDTLVRDETTWNVALVAESVDDHRVVIMAPRPEVEKESSHLKISARWPRWA
Ga0307316_101950891	3300028755	Soil	VASESITIRFPAGGWEYAVTNRVPEVGDTLVRDEKTWTVRLVAESVDDHRVVIMALPPEVENESSHLKHSARWPRWR
Ga0307281_100974472	3300028803	Soil	VASESITIRFPAGGWEYAVTDRVPEVGDTLVRDETTWTVALVAESVDDHRVIIMALPPEAEKESSHLKNSARWPRWR
Ga0307302_102058221	3300028814	Soil	VASESITIRFPAGGWEYAVTDRVPEVGDTLVRDKTTWTVAVVAESVDAHRVVIMALPPEVEKEYSHLKNSARWPRWR
Ga0299907_100608682	3300030006	Soil	VVSETITIRFPNGTWEYRVTDRLPEVGDTLVRQGVTWTVVRVTESLDDHRVVTMAAADEEPDR
Ga0299907_104478033	3300030006	Soil	VVFTERITIRYPTGAWEYVSTERVPAFGDTLVRDGQTWVVVGVTESVDDHRVVTMAVAPDAPPAL
Ga0308183_10938981	3300030988	Soil	VASETITIRFPSGAWEYAVTERLPEVGDTLVREGETWNVALVAESVDDHRVVIMALPPQVEKESSHLKISARWARWA
Ga0308183_12036091	3300030988	Soil	MTIRFPSGAWEYVLTERVPDVGDTLLREGTTWMVAGVTESVDHHRVITMALPPEVQN
Ga0308178_11725841	3300030990	Soil	RRPVASESITIRFPAGGWEYAVTDRVPEVGDTLVRDKTTWTVAVVAESVDAHRVVIMALPPEVEKEYSHLKNSARWPRWR
Ga0308151_10383472	3300031124	Soil	RRPVASESITIRFPSGAWEYAMTERVPDVGDTLLREGETWNVALVAESMDDHRVVIMAPAPEVEKQSSHLKISARWPRWA
Ga0307498_101138432	3300031170	Soil	VASESITIRFPSGAWEYAVTERVPEVGDTLVRDEKTWAVVAVAESVDEHRVISMALPPEVEKESSHLKISARWPRWA
Ga0307498_104720472	3300031170	Soil	VASESITIRFPSGAWEYAVTERVPEVGDTLVRDEKTWAVVAVAELVDEHRVITMALPPEVEKESSQLK
Ga0307497_100984162	3300031226	Soil	VASESITIRFASGAWEYAVTERVPEVGDTLVRDEKTWAVVAVAESMDEHRVISMALPPEVEKESSHLKISARWPRWA
Ga0308179_10502541	3300031424	Soil	VASESITIRFPAGGWEYAVTDRVPEVGDTLVRDKTTWTVAVVAESVDAHRVVIMALPPEVEKESSHLKNSARWPRWR
Ga0310887_109347841	3300031547	Soil	VASETITIRFPSGAWEYAVTERVPEVGDTLVREGETWNVALVAESVDDHRVVIMALPSKVEKESSHLTTSARWARWV
Ga0310886_103865782	3300031562	Soil	VATESITIRFPSGAWEYVVTERVPDVGDTLVRDGKAWIVAGVTESVDGHRVIAMATAPEPVK
Ga0310907_104199522	3300031847	Soil	VASETITIRFPSGAWEYAVTERVPEVGDTLVREGETWNVALVAESVDDHRVVIMALPSEVEKES
Ga0310904_109717422	3300031854	Soil	VATESITIRFPSGAWEYVVTERVPDVGDTLVRDGKAWIVAGVTESVDGHRVIAMATAPEP
Ga0310904_113300231	3300031854	Soil	LWPPESITIRFPSGAWEYVLTERVPDAGDTLVRDAKTWMVAGVTESVDGQRVITMAAPP
Ga0310892_103200702	3300031858	Soil	MASESLTIRYASGAWEYVMTNRVPDVGDTLVREGETWTVALVAEPVDDHRVVIMTLGPVENQRSD
Ga0310893_105849282	3300031892	Soil	VASESITIRFPTGAWEYAVTNRVPDVGDTLVREGETWTVALVAEPVDDHRVVIMTLG
Ga0310900_102673881	3300031908	Soil	VASESITIRFPTGAWEYAVTNRVPDVGDTLVRDGETWNVALVAEPVDDHRVVIMTLGPVE
Ga0310897_101671592	3300032003	Soil	ITIRLPSGAWEYVVTERVPDVGDTLVRDGKAWIVAGVTESVDGHRVIAMAAAPEPVK
Ga0310906_109118981	3300032013	Soil	VATESITIRFPSGAWECVVTERVPDVGDTLVRDGKAWIVAGVTESVDGHRVIAMATAPEPVK
Ga0247829_105351352	3300033550	Soil	ITIRFPSGAWEYAVTERVPEVGDTLVREGETWNVALVAESVDDHRVVIMALPSKVEKESSHLKTSARWARWV
Ga0247830_104297371	3300033551	Soil	VASETITIRFPSGAWEYAVTERVPEVGDTLVREGETWNVALVAESVDDHRVVIM
Ga0247830_105359061	3300033551	Soil	SGAWEYAVTERVPEVGDTLVREGETWNVALVAESVDDHRVVIMALPSKVEKESSHRKTSARWARWV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F083868

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences