NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F083864

Metagenome / Metatranscriptome Family F083864

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F083864
Family Type Metagenome / Metatranscriptome
Number of Sequences 112
Average Sequence Length 49 residues
Representative Sequence MYAHLKSVVLGLALVTLLAGLSACAKRPMVIGGSSAPAPSAAVAPAPTR
Number of Associated Samples 90
Number of Associated Scaffolds 112

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 86.49 %
% of genes near scaffold ends (potentially truncated) 18.75 %
% of genes from short scaffolds (< 2000 bps) 76.79 %
Associated GOLD sequencing projects 84
AlphaFold2 3D model prediction Yes
3D model pTM-score0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (87.500 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil
(17.857 % of family members)
Environment Ontology (ENVO) Unclassified
(29.464 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(51.786 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Fibrous Signal Peptide: Yes Secondary Structure distribution: α-helix: 31.17%    β-sheet: 0.00%    Coil/Unstructured: 68.83%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

51015202530354045MYAHLKSVVLGLALVTLLAGLSACAKRPMVIGGSSAPAPSAAVAPAPTRSequenceα-helicesβ-strandsCoilSS Conf. scoreSignal Peptide
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.38
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
87.5%12.5%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds



Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Soil
Vadose Zone Soil
Tropical Forest Soil
Grasslands Soil
Switchgrass Rhizosphere
Soil
Soil
Grasslands Soil
Soil
Hardwood Forest Soil
Soil
Soil
Tropical Peatland
Soil
Tropical Forest Soil
Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Sandy Soil
Tabebuia Heterophylla Rhizosphere
Switchgrass Rhizosphere
Populus Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
11.6%10.7%17.9%7.1%8.0%3.6%8.0%3.6%11.6%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
INPhiseqgaiiFebDRAFT_10143344323300000364SoilMKSVALGLAFITLLTGLSACARRPVVVGGSPAPAPSAAVTPAPTR*
F14TC_10014321453300000559SoilMYAHLKSVALGLALVTLLAGLSACAKRPMVLGNSSAPAPSAAVTPAPTR*
JGI10216J12902_10313745333300000956SoilMYAHLKSVALGLALVTLLAGLSACAKRPMVIGGSSAPAPSAAATPAPTR*
JGI25383J37093_1020381113300002560Grasslands SoilMYAHLKSVVLGLALVTLLAGLSACAKRPMVIGGSSAPAPSAAVAPAPTR*
JGI25382J37095_1009573713300002562Grasslands SoilMKAHLKSVVLGLALVTVLAGLSACAKRPMVIGGSSAPAPSAAVAPSPTR*
JGI25390J43892_1013751213300002911Grasslands SoilMNTQLKSVALGLALISLLTGLSACAKRPLVIGGSPAPAPSAAV
Ga0062593_10031370723300004114SoilMKTLKSVVLGLALVTLLTGLSACAKRPLVLGNSSAPAPSAAVTPAPTR*
Ga0066396_1000360813300004267Tropical Forest SoilMKTHVKSVVLGLALITLLTGLSACAKRPLVIGGSPAPSPSAAVAPDTTR*
Ga0066395_1006326823300004633Tropical Forest SoilMKTHVKSVVLGLALITLLTGLSACAKRPLVVGGSPAPSPSAAVAPDTTR*
Ga0066672_1000498133300005167SoilMKAHLKSVVLGLALVTVLAGLSACAKRPMVIGGSSAPAPSAAVAPAPTR*
Ga0066680_1004435363300005174SoilMYAHLKSVVLGLALVTLFAGLSACAKRPMVIGGSSAPAPSAAVAPAPNR*
Ga0066680_1027637823300005174SoilMYAHLKSVVLGLALVTLLAGLSACAKRPMVIGGSSAPSPSAAVAPAPAR*
Ga0066680_1043473513300005174SoilMKAHLKSVVLGLALVTVLAGLSACAKRPMVIGGSSAPAPSAAVAP
Ga0066690_1014901423300005177SoilMNTQLKSVALGLALISLLTGLSACAKRPLVIGGSPAPAPSAAVTPAPTR*
Ga0066688_1055741413300005178SoilMYAHLKSVVLGLALVTLFAGLSACAKRPMVIGGSSAPAPSAAVAPAPTR*
Ga0066685_1008471713300005180SoilMNTHLKSMALGLALITLLTGLSACAKRPLVVGGSPAPAPSAAVTPVPTR*
Ga0066676_1015020133300005186SoilMNASLKTMVLGLALVTVLAGLSACAKRPMVIGGSSAPAPSASVTPAPTR*
Ga0066676_1056495713300005186SoilMKTLKSVVLGLALVTLLTGLSACAKRPMVLGNSSAPAPSAAVTPAPTR*
Ga0065705_1007710323300005294Switchgrass RhizosphereMKALKSMALGLALVSVLAGLSACAKRPVVLGSSPAPAPSAAATPAR*
Ga0066388_10049361063300005332Tropical Forest SoilLGLALITLLTGLSACAKRPLVIGGSPAPSPSAAVAPDTTR*
Ga0066388_10202156023300005332Tropical Forest SoilMKTRLKAVVLGLALVTLLTGLSACAKRPMVIGGASAPAPSAAVTTQPAR*
Ga0070671_10136470913300005355Switchgrass RhizosphereMKTRLKAVVLGLALVTLLTGLSACAKRPMVIGGSSPAPAPSAAVTPQPTR*
Ga0070708_10032480613300005445Corn, Switchgrass And Miscanthus RhizosphereGRLMYAHLKSVVLGLALVTLFAGLSACAKRPMVIGGSSAPAPSAAVAPAPTR*
Ga0066682_1031281833300005450SoilMNTQLKSVALALALISLLTGLSACAKRPLVIGGSPAPAPSAAVTPAPTR*
Ga0070696_10171347613300005546Corn, Switchgrass And Miscanthus RhizosphereMAMKTLKSVVLGLALVTLLTGLSACAKRPMVLGNSSAPAPSAAVTPAPTR*
Ga0066905_10006834923300005713Tropical Forest SoilMKTHVKSVVLGLALITLLTGLSACAKRPLVVGGSPAPSPSAAVAPAPTR*
Ga0066905_10106010113300005713Tropical Forest SoilMKTHVKSVVLGLALITLLTGLSACAKRPLVVGSSPAPSPSAAVAPAPTR*
Ga0066903_10038458333300005764Tropical Forest SoilMYAQLKPVVLGLALITLVVGLSVCAKRPVLVGGMSTPAPSAAVTPEPTR*
Ga0066903_10180449333300005764Tropical Forest SoilMYAQLKPVVLGLALITLLAGLSACAKRPVIAGGMSAPAPSAAVTPEPTR*
Ga0081540_104937843300005983Tabebuia Heterophylla RhizosphereMNALKSVMLGLALVGVLAGLSACAKRPLVIGGAPAPSPSAAVSPAPAR*
Ga0066696_1032011923300006032SoilMNTQLKSVALGLALISLLTGLSACAKRPLVIGGSPAPAPSA
Ga0075417_1004801643300006049Populus RhizosphereMNALKSVMLGLALVGVLAGLSACAKRPLVIGGAPAPAPSAAVSPAPAR*
Ga0075428_10199863733300006844Populus RhizosphereMYAHLKSVALGLALVTLLAGLSACAKRPVVIGGSSAPAPSAAATPAPTR*
Ga0075421_10003704143300006845Populus RhizosphereMNALNSVMLGLALVGVLAGLSACAKRPLVIGGAPAPAPSAAVSPAPAR*
Ga0075433_1003988013300006852Populus RhizosphereMKTLKSVVLGLALVTLLTGISACAKRPLVLGNSAAPAPSAAVTPAPTR*
Ga0075425_100027463143300006854Populus RhizosphereRMAMKTLKSVVLGLALVTLLTGISACAKRPLVLGNSAAPAPSAAVTPAPTR*
Ga0075425_10304863923300006854Populus RhizosphereMKTRLKAVVLGLALVTLLTGLSACAKRPMVIGGSSPAPAPSAAATPQPTR*
Ga0075434_10010037123300006871Populus RhizosphereMKTLKSVVLGLALVTLLTGISACAKRPLVLGNSSAPAPSAAAAPAPTR*
Ga0066710_100004039103300009012Grasslands SoilMNTQLKSVALALALISLLTGLSACAKRPLVIGGSPAPAPSAAVTPAPTR
Ga0114129_1101016323300009147Populus RhizosphereMKAHLKSVVLGLALVTVLAGLSACAKRPMVIGGSSAPSPSAAVAPAPAR*
Ga0075423_1099151713300009162Populus RhizosphereMKAHLKSVVLGLALVTVLAGVSACAKRPMVIGGSSAPAPSAAVAPSPTR*
Ga0075423_1161819913300009162Populus RhizosphereMNTQVKSVVLGLALITLLTGLSACAKRPMVIGGSSAPAPSAAATPAPTR*
Ga0126374_1003151913300009792Tropical Forest SoilMKTVALGLALVTLLGLSACARRPVVIGGAAAPAPTAAVTPAPTR*
Ga0126374_1068349113300009792Tropical Forest SoilMCGQFRSLVLGLALITVLAGLSACARRPVVIGGAPAPAPSAAVAPVLTR*
Ga0126380_1016892833300010043Tropical Forest SoilMKSMALGLALITLLAGLSACARRPVVVGGSAAPSPSAAVTPVPTR*
Ga0126380_1115093423300010043Tropical Forest SoilMKTHVKSVVLGLTLITLLTGLSACAKRPLVVGGSPAPSPSAVVAPAPI*
Ga0126384_1002318823300010046Tropical Forest SoilMKSMALGLALITLLAGLSACARRPVVIGGSAAPAPSAAVTPAPTR*
Ga0126384_1016560933300010046Tropical Forest SoilMREDRVFTHRRRMVMKTHVKSVVLGLALITLLTGLSACAKRPLVIGGSPAPSPSAAVAPDTTR*
Ga0134071_1024211213300010336Grasslands SoilMYAHLKSVVLGLALVTVLAGLSACAKRPMVIGGSSAPAPSAAVAPAPTR*
Ga0126376_1005940333300010359Tropical Forest SoilMREDRVFTHRRRMVMKTHVKSVVLGVALITLLTGLSACAKRPLVIGGSPAPSPSAAVAPDTTR*
Ga0126376_1056987623300010359Tropical Forest SoilMCGQLRSLVLGLALITVLAGLSACARRPVVIGGAPAPAPSAAVAPVLTR*
Ga0126379_1147454433300010366Tropical Forest SoilMKTHVKSVVLGIALITLLTGLSACAKRPLVIGGSPAPSPSAAVAPDTTR*
Ga0126383_1043137913300010398Tropical Forest SoilSAEREDRVFTHRRRMVMKTHVKSVVLGLALITLLTGLSACAKRPLVIGGSPAPSPSAAVAPDTTR*
Ga0137389_1001229123300012096Vadose Zone SoilMYAQLKSVVLGLALITLLAGLSACAKRPMVVGGSSVPVPSAAVTPVPTQ*
Ga0137388_1000470343300012189Vadose Zone SoilMYAQLKSVVLGLALITLLAGLSACAKRPMVVGGSSVPAPSAAVTPAPTR*
Ga0137362_1030423023300012205Vadose Zone SoilMNTQLKSVVLGLALITLLTGLSACAKRPVVIGGSPAPAPSAAVTPAPTR*
Ga0137377_1002116343300012211Vadose Zone SoilMYAHLKSVVLGLALVTLLAGLSACAKRPMVIGGSSAPAPSAAVAPTPTR*
Ga0137377_1099551633300012211Vadose Zone SoilEFTKRRRMAMKTLKSVVLGLALVTLLTGLSACAKRPMVLGNSSAPAPSAAVTPAPTR*
Ga0137360_1057674713300012361Vadose Zone SoilMKTLKSVVLGLALVTLLTGLSACAKRPMVLGNSSAPAPSAAAAPAPTR*
Ga0137358_1027321423300012582Vadose Zone SoilMNTQLKSVVLGLALITLLTGLSACAKRPMVIGGSPAPAPSAAVTPAPTR*
Ga0137397_1007127033300012685Vadose Zone SoilMNASLKTMVLGLALVTVLAGLSACAKRPLVVGGSSAPPPSASVTPAPTR*
Ga0137397_1112037423300012685Vadose Zone SoilVLGLALVTLLTGLSACAKRPMVIGGASAPAPSAAVAPAPTR*
Ga0137394_1090465613300012922Vadose Zone SoilMYAHLKSVVLGLALVTLLMGLSACAKRPMVIGGGSAPAPSAAVAPAPTR*
Ga0137410_1030212133300012944Vadose Zone SoilMNASLKTMVLGLALVTVLAGLSACAKRPMVIGGSSAPAPSASATPAPAR*
Ga0126375_1169538123300012948Tropical Forest SoilMNALKSVMLGLALVGVLAGLSACAKRPLVIGGAPAPSPSAA
Ga0126369_1004719233300012971Tropical Forest SoilMREDRVFTHRRRMVMKTHVKSVVLGLALITLLTGLSACAKRPLVVGGSPAPSPSAAVAPDTTR*
Ga0164304_1092399013300012986SoilMKTLRSVVLGLALVTLLTGLSACAKRPLVLGNSSAPAPSAAVAPAPTR*
Ga0157376_1089461113300014969Miscanthus RhizosphereKEEAMKTRLKAVVLGLALVTLLTGLSACAKRPMVIGGSSPAPAPSAAVTPQPTR*
Ga0163161_1194554923300017792Switchgrass RhizosphereMKTLKSVVLGLALVTLLTGLSACAKRPMVLGNSSAPAPSAAVTPAPTR
Ga0187775_1001656633300017939Tropical PeatlandMNTRLKAAVLGFALFSLLTGLSACAKRPMVIGSSSAPAPTASVAPEPTR
Ga0066655_1000373563300018431Grasslands SoilMNTHLKSMALGLALITLLTGLSACAKRPLVVGGSPAPAPSAAVTPVPTR
Ga0066655_1050953713300018431Grasslands SoilMYAHLKSVVLGLALVTLLAGLSACAKRPMVIGGSSAPAPSAAVAPAPTR
Ga0066667_1105292413300018433Grasslands SoilMKAHLKSVVLGLALVTVLAGLSACAKRPMVIGGSSAPAPSAAVAPAPTR
Ga0137408_1275918103300019789Vadose Zone SoilMNAHMKSVVLGLALVTVLAGLSACAKRPMVVGGSSAPAPSAAVAPEPTR
Ga0247691_106705613300024222SoilMKTRLKAVVLGLALVTLLTGLSACAKRPMVIGGSSPAPAPSAAVTPQPT
Ga0207684_1005919043300025910Corn, Switchgrass And Miscanthus RhizosphereMKAHLKSVVLGLALVTVLAGLSACAKRPMVIGGSSAPAPSAAVAPSPTR
Ga0207684_1053612013300025910Corn, Switchgrass And Miscanthus RhizosphereLTRKEGGRLMYAHLKSVVLGLALVTLFAGLSACAKRPMVIGGSSAPAPSAAVAPAPTR
Ga0207681_1025222733300025923Switchgrass RhizosphereMKTLKSVVLGLALVTLLTGLSACAKRPLVLGNSSAPAPSAAVTPAPTR
Ga0209055_106574823300026309SoilMYAHLKSVVLGLALVTLLAGLSACAKRPMVIGGSSAPSPSAAVAPAPAR
Ga0209239_112358723300026310Grasslands SoilMNTQLKSVALGLALISLLTGLSACAKRPLVIGGSPAPAPSAAVTPAPTR
Ga0209686_116764123300026315SoilVLGLALVTLLAGLSACAKRPMVIGGSSAPSPSAAVAPAPAR
Ga0209154_131568823300026317SoilLGLALVTLLAGLSACAKRPMVIGGSSAPSPSAAVAPAPAR
Ga0209470_114335023300026324SoilMNASLKTMVLGLALVTVLAGLSACAKRPMVIGGSSAPAPSASVTPAPTR
Ga0257166_104328223300026358SoilMYAQLKSVVLGLALITLLAGLSACAKRPMVIGGSSAPAPSAAVAPAPTR
Ga0209806_125239913300026529SoilLGLALVTVLAGLSACAKRPMVIGGSSAPAPSAAVAPAPTR
Ga0209160_115346813300026532SoilMYAHLKSVVLGLALVTLFAGLSACAKRPMVIGGSSAPAPSAAVAPAPTR
Ga0209160_116472013300026532SoilRRTTMKAHLKSVVLGLALVTVLAGLSACAKRPMVIGGSSAPAPSAAVAPSPTR
Ga0209157_115307713300026537SoilVVLGLALVTVLAGLSACAKRPMVIGGSSAPSPSAAVAPAPAR
Ga0208991_111102823300027681Forest SoilMYAHLKSVVLGLALVTLLTGLSACAKRPMVIGGASAPAPSAAVAPAPTR
Ga0209814_1001222443300027873Populus RhizosphereMKALKSMALGLALVSVLAGLSACAKRPVVLGSSPAPAPSAAATPAR
Ga0209814_1009546323300027873Populus RhizosphereMNALKSVMLGLALVGVLAGLSACAKRPLVIGGAPAPAPSAAVSPAPAR
Ga0209465_1010133923300027874Tropical Forest SoilMKTHVKSVVLGLALITLLTGLSACAKRPLVVGGSPAPSPSAAVAPDTTR
Ga0209488_1025385833300027903Vadose Zone SoilMYAQLKSVVLGLALITLLAGLSACAKRPMVVGGSSVPAPSAAVTPAPTR
Ga0209382_1053492223300027909Populus RhizosphereMYAHLKSVALGLALVTLLAGLSACAKRPVVIGGSSAPAPSAAATPAPTR
(restricted) Ga0255311_103694213300031150Sandy SoilMYAQLKPVVLGLALITLLAGLSACAKRPMVISGSSAPAPSAAVAPTPTR
(restricted) Ga0255310_1018930513300031197Sandy SoilMYAQLKSVVLGLALITLLAGLSACAKRPMVISGSSAPAPSAAVAPTPTR
(restricted) Ga0255312_108202823300031248Sandy SoilMYAQLKPVVLGLALITLLAGLSACAKRPMVIGGSSAPAPSAAVAPAPTR
Ga0318516_1029424313300031543SoilMKTHVKSMVLGLALITLLTGLSACAKRPLVIGGSPAPSPSAAVAPDTTR
Ga0307469_1072903723300031720Hardwood Forest SoilMNAHLKSVALGLALVTLLAGLSACAKRPMVIGGSPAPAPSAAVAPAPTR
Ga0307469_1098986813300031720Hardwood Forest SoilMNTQLKSVVLGLALITLLTGLSACAKRPMVIGGSPAPAPSAAATPAPAR
Ga0307469_1144259913300031720Hardwood Forest SoilMKTLKSVVLGLALVTLLTGLSACAKRPLVLGNSPAPAPSAAVTPAPTR
Ga0307469_1249169013300031720Hardwood Forest SoilMKTLKSVVLGLALVTLLTGLSACAKRPMVIGGNSSAPAPSAAVTPAPTR
Ga0307468_10043145723300031740Hardwood Forest SoilMNASLKTMVLGLALVTVLAGLSACAKRPMVIGGSSAPAPSASVTPVPTR
Ga0307468_10244825813300031740Hardwood Forest SoilMKTLKSVVLGLALVTLLTGISACAKRPLVLGNSSAPAPSAAAAPAPTR
Ga0307473_1047798523300031820Hardwood Forest SoilMKAHLKSVVLGLALVTVLAGLSACAKRPMVIGGSSAPAPSASVTPAPTR
Ga0310884_1044584423300031944SoilMKTLKAVVLGLALVTLLTGLSACAKRPLVLGNSSAPAPSAAVAPAPTR
Ga0307471_10135369013300032180Hardwood Forest SoilMNASLKTMVLGLALVTVLAGLSACAKRPMVIGGSSAPAPS
Ga0307472_10003885623300032205Hardwood Forest SoilMKSVALALAFITLLTGLSACARRPVVVGGSPAPAPSAAVTPAPTR
Ga0335085_1135807123300032770SoilMKTRLKAVVLGLAVVTLLTGLSACAKRPMVIGGASAPAPSAAVTSQPAR
Ga0314780_082114_3_1313300034659SoilVVLGLALVTLLTGLSACAKRPLVLGNSSAPAPSAAVAPAPTR
Ga0314783_158843_377_5263300034662SoilAMKTLRSVVLGLALVTLLTGLSACAKRPLVLGNSSAPAPSAAVAPAPTR
Ga0314793_116387_62_2143300034668SoilMAMKTLRSVVLGLALVTLLTGLSACAKRPLVLGNSSAPAPSAAVAPAPTR


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.