Basic Information | |
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Family ID | F083864 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 112 |
Average Sequence Length | 49 residues |
Representative Sequence | MYAHLKSVVLGLALVTLLAGLSACAKRPMVIGGSSAPAPSAAVAPAPTR |
Number of Associated Samples | 90 |
Number of Associated Scaffolds | 112 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 86.49 % |
% of genes near scaffold ends (potentially truncated) | 18.75 % |
% of genes from short scaffolds (< 2000 bps) | 76.79 % |
Associated GOLD sequencing projects | 84 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.38 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (87.500 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (17.857 % of family members) |
Environment Ontology (ENVO) | Unclassified (29.464 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (51.786 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Fibrous | Signal Peptide: | Yes | Secondary Structure distribution: | α-helix: 31.17% β-sheet: 0.00% Coil/Unstructured: 68.83% |
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Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.38 |
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Visualization |
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All Organisms Unclassified |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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Visualization |
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Soil Vadose Zone Soil Tropical Forest Soil Grasslands Soil Switchgrass Rhizosphere Soil Soil Grasslands Soil Soil Hardwood Forest Soil Soil Soil Tropical Peatland Soil Tropical Forest Soil Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Sandy Soil Tabebuia Heterophylla Rhizosphere Switchgrass Rhizosphere Populus Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Geographical Distribution | |
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Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Protein ID | Sample Taxon ID | Habitat | Sequence |
INPhiseqgaiiFebDRAFT_1014334432 | 3300000364 | Soil | MKSVALGLAFITLLTGLSACARRPVVVGGSPAPAPSAAVTPAPTR* |
F14TC_1001432145 | 3300000559 | Soil | MYAHLKSVALGLALVTLLAGLSACAKRPMVLGNSSAPAPSAAVTPAPTR* |
JGI10216J12902_1031374533 | 3300000956 | Soil | MYAHLKSVALGLALVTLLAGLSACAKRPMVIGGSSAPAPSAAATPAPTR* |
JGI25383J37093_102038111 | 3300002560 | Grasslands Soil | MYAHLKSVVLGLALVTLLAGLSACAKRPMVIGGSSAPAPSAAVAPAPTR* |
JGI25382J37095_100957371 | 3300002562 | Grasslands Soil | MKAHLKSVVLGLALVTVLAGLSACAKRPMVIGGSSAPAPSAAVAPSPTR* |
JGI25390J43892_101375121 | 3300002911 | Grasslands Soil | MNTQLKSVALGLALISLLTGLSACAKRPLVIGGSPAPAPSAAV |
Ga0062593_1003137072 | 3300004114 | Soil | MKTLKSVVLGLALVTLLTGLSACAKRPLVLGNSSAPAPSAAVTPAPTR* |
Ga0066396_100036081 | 3300004267 | Tropical Forest Soil | MKTHVKSVVLGLALITLLTGLSACAKRPLVIGGSPAPSPSAAVAPDTTR* |
Ga0066395_100632682 | 3300004633 | Tropical Forest Soil | MKTHVKSVVLGLALITLLTGLSACAKRPLVVGGSPAPSPSAAVAPDTTR* |
Ga0066672_100049813 | 3300005167 | Soil | MKAHLKSVVLGLALVTVLAGLSACAKRPMVIGGSSAPAPSAAVAPAPTR* |
Ga0066680_100443536 | 3300005174 | Soil | MYAHLKSVVLGLALVTLFAGLSACAKRPMVIGGSSAPAPSAAVAPAPNR* |
Ga0066680_102763782 | 3300005174 | Soil | MYAHLKSVVLGLALVTLLAGLSACAKRPMVIGGSSAPSPSAAVAPAPAR* |
Ga0066680_104347351 | 3300005174 | Soil | MKAHLKSVVLGLALVTVLAGLSACAKRPMVIGGSSAPAPSAAVAP |
Ga0066690_101490142 | 3300005177 | Soil | MNTQLKSVALGLALISLLTGLSACAKRPLVIGGSPAPAPSAAVTPAPTR* |
Ga0066688_105574141 | 3300005178 | Soil | MYAHLKSVVLGLALVTLFAGLSACAKRPMVIGGSSAPAPSAAVAPAPTR* |
Ga0066685_100847171 | 3300005180 | Soil | MNTHLKSMALGLALITLLTGLSACAKRPLVVGGSPAPAPSAAVTPVPTR* |
Ga0066676_101502013 | 3300005186 | Soil | MNASLKTMVLGLALVTVLAGLSACAKRPMVIGGSSAPAPSASVTPAPTR* |
Ga0066676_105649571 | 3300005186 | Soil | MKTLKSVVLGLALVTLLTGLSACAKRPMVLGNSSAPAPSAAVTPAPTR* |
Ga0065705_100771032 | 3300005294 | Switchgrass Rhizosphere | MKALKSMALGLALVSVLAGLSACAKRPVVLGSSPAPAPSAAATPAR* |
Ga0066388_1004936106 | 3300005332 | Tropical Forest Soil | LGLALITLLTGLSACAKRPLVIGGSPAPSPSAAVAPDTTR* |
Ga0066388_1020215602 | 3300005332 | Tropical Forest Soil | MKTRLKAVVLGLALVTLLTGLSACAKRPMVIGGASAPAPSAAVTTQPAR* |
Ga0070671_1013647091 | 3300005355 | Switchgrass Rhizosphere | MKTRLKAVVLGLALVTLLTGLSACAKRPMVIGGSSPAPAPSAAVTPQPTR* |
Ga0070708_1003248061 | 3300005445 | Corn, Switchgrass And Miscanthus Rhizosphere | GRLMYAHLKSVVLGLALVTLFAGLSACAKRPMVIGGSSAPAPSAAVAPAPTR* |
Ga0066682_103128183 | 3300005450 | Soil | MNTQLKSVALALALISLLTGLSACAKRPLVIGGSPAPAPSAAVTPAPTR* |
Ga0070696_1017134761 | 3300005546 | Corn, Switchgrass And Miscanthus Rhizosphere | MAMKTLKSVVLGLALVTLLTGLSACAKRPMVLGNSSAPAPSAAVTPAPTR* |
Ga0066905_1000683492 | 3300005713 | Tropical Forest Soil | MKTHVKSVVLGLALITLLTGLSACAKRPLVVGGSPAPSPSAAVAPAPTR* |
Ga0066905_1010601011 | 3300005713 | Tropical Forest Soil | MKTHVKSVVLGLALITLLTGLSACAKRPLVVGSSPAPSPSAAVAPAPTR* |
Ga0066903_1003845833 | 3300005764 | Tropical Forest Soil | MYAQLKPVVLGLALITLVVGLSVCAKRPVLVGGMSTPAPSAAVTPEPTR* |
Ga0066903_1018044933 | 3300005764 | Tropical Forest Soil | MYAQLKPVVLGLALITLLAGLSACAKRPVIAGGMSAPAPSAAVTPEPTR* |
Ga0081540_10493784 | 3300005983 | Tabebuia Heterophylla Rhizosphere | MNALKSVMLGLALVGVLAGLSACAKRPLVIGGAPAPSPSAAVSPAPAR* |
Ga0066696_103201192 | 3300006032 | Soil | MNTQLKSVALGLALISLLTGLSACAKRPLVIGGSPAPAPSA |
Ga0075417_100480164 | 3300006049 | Populus Rhizosphere | MNALKSVMLGLALVGVLAGLSACAKRPLVIGGAPAPAPSAAVSPAPAR* |
Ga0075428_1019986373 | 3300006844 | Populus Rhizosphere | MYAHLKSVALGLALVTLLAGLSACAKRPVVIGGSSAPAPSAAATPAPTR* |
Ga0075421_1000370414 | 3300006845 | Populus Rhizosphere | MNALNSVMLGLALVGVLAGLSACAKRPLVIGGAPAPAPSAAVSPAPAR* |
Ga0075433_100398801 | 3300006852 | Populus Rhizosphere | MKTLKSVVLGLALVTLLTGISACAKRPLVLGNSAAPAPSAAVTPAPTR* |
Ga0075425_10002746314 | 3300006854 | Populus Rhizosphere | RMAMKTLKSVVLGLALVTLLTGISACAKRPLVLGNSAAPAPSAAVTPAPTR* |
Ga0075425_1030486392 | 3300006854 | Populus Rhizosphere | MKTRLKAVVLGLALVTLLTGLSACAKRPMVIGGSSPAPAPSAAATPQPTR* |
Ga0075434_1001003712 | 3300006871 | Populus Rhizosphere | MKTLKSVVLGLALVTLLTGISACAKRPLVLGNSSAPAPSAAAAPAPTR* |
Ga0066710_10000403910 | 3300009012 | Grasslands Soil | MNTQLKSVALALALISLLTGLSACAKRPLVIGGSPAPAPSAAVTPAPTR |
Ga0114129_110101632 | 3300009147 | Populus Rhizosphere | MKAHLKSVVLGLALVTVLAGLSACAKRPMVIGGSSAPSPSAAVAPAPAR* |
Ga0075423_109915171 | 3300009162 | Populus Rhizosphere | MKAHLKSVVLGLALVTVLAGVSACAKRPMVIGGSSAPAPSAAVAPSPTR* |
Ga0075423_116181991 | 3300009162 | Populus Rhizosphere | MNTQVKSVVLGLALITLLTGLSACAKRPMVIGGSSAPAPSAAATPAPTR* |
Ga0126374_100315191 | 3300009792 | Tropical Forest Soil | MKTVALGLALVTLLGLSACARRPVVIGGAAAPAPTAAVTPAPTR* |
Ga0126374_106834911 | 3300009792 | Tropical Forest Soil | MCGQFRSLVLGLALITVLAGLSACARRPVVIGGAPAPAPSAAVAPVLTR* |
Ga0126380_101689283 | 3300010043 | Tropical Forest Soil | MKSMALGLALITLLAGLSACARRPVVVGGSAAPSPSAAVTPVPTR* |
Ga0126380_111509342 | 3300010043 | Tropical Forest Soil | MKTHVKSVVLGLTLITLLTGLSACAKRPLVVGGSPAPSPSAVVAPAPI* |
Ga0126384_100231882 | 3300010046 | Tropical Forest Soil | MKSMALGLALITLLAGLSACARRPVVIGGSAAPAPSAAVTPAPTR* |
Ga0126384_101656093 | 3300010046 | Tropical Forest Soil | MREDRVFTHRRRMVMKTHVKSVVLGLALITLLTGLSACAKRPLVIGGSPAPSPSAAVAPDTTR* |
Ga0134071_102421121 | 3300010336 | Grasslands Soil | MYAHLKSVVLGLALVTVLAGLSACAKRPMVIGGSSAPAPSAAVAPAPTR* |
Ga0126376_100594033 | 3300010359 | Tropical Forest Soil | MREDRVFTHRRRMVMKTHVKSVVLGVALITLLTGLSACAKRPLVIGGSPAPSPSAAVAPDTTR* |
Ga0126376_105698762 | 3300010359 | Tropical Forest Soil | MCGQLRSLVLGLALITVLAGLSACARRPVVIGGAPAPAPSAAVAPVLTR* |
Ga0126379_114745443 | 3300010366 | Tropical Forest Soil | MKTHVKSVVLGIALITLLTGLSACAKRPLVIGGSPAPSPSAAVAPDTTR* |
Ga0126383_104313791 | 3300010398 | Tropical Forest Soil | SAEREDRVFTHRRRMVMKTHVKSVVLGLALITLLTGLSACAKRPLVIGGSPAPSPSAAVAPDTTR* |
Ga0137389_100122912 | 3300012096 | Vadose Zone Soil | MYAQLKSVVLGLALITLLAGLSACAKRPMVVGGSSVPVPSAAVTPVPTQ* |
Ga0137388_100047034 | 3300012189 | Vadose Zone Soil | MYAQLKSVVLGLALITLLAGLSACAKRPMVVGGSSVPAPSAAVTPAPTR* |
Ga0137362_103042302 | 3300012205 | Vadose Zone Soil | MNTQLKSVVLGLALITLLTGLSACAKRPVVIGGSPAPAPSAAVTPAPTR* |
Ga0137377_100211634 | 3300012211 | Vadose Zone Soil | MYAHLKSVVLGLALVTLLAGLSACAKRPMVIGGSSAPAPSAAVAPTPTR* |
Ga0137377_109955163 | 3300012211 | Vadose Zone Soil | EFTKRRRMAMKTLKSVVLGLALVTLLTGLSACAKRPMVLGNSSAPAPSAAVTPAPTR* |
Ga0137360_105767471 | 3300012361 | Vadose Zone Soil | MKTLKSVVLGLALVTLLTGLSACAKRPMVLGNSSAPAPSAAAAPAPTR* |
Ga0137358_102732142 | 3300012582 | Vadose Zone Soil | MNTQLKSVVLGLALITLLTGLSACAKRPMVIGGSPAPAPSAAVTPAPTR* |
Ga0137397_100712703 | 3300012685 | Vadose Zone Soil | MNASLKTMVLGLALVTVLAGLSACAKRPLVVGGSSAPPPSASVTPAPTR* |
Ga0137397_111203742 | 3300012685 | Vadose Zone Soil | VLGLALVTLLTGLSACAKRPMVIGGASAPAPSAAVAPAPTR* |
Ga0137394_109046561 | 3300012922 | Vadose Zone Soil | MYAHLKSVVLGLALVTLLMGLSACAKRPMVIGGGSAPAPSAAVAPAPTR* |
Ga0137410_103021213 | 3300012944 | Vadose Zone Soil | MNASLKTMVLGLALVTVLAGLSACAKRPMVIGGSSAPAPSASATPAPAR* |
Ga0126375_116953812 | 3300012948 | Tropical Forest Soil | MNALKSVMLGLALVGVLAGLSACAKRPLVIGGAPAPSPSAA |
Ga0126369_100471923 | 3300012971 | Tropical Forest Soil | MREDRVFTHRRRMVMKTHVKSVVLGLALITLLTGLSACAKRPLVVGGSPAPSPSAAVAPDTTR* |
Ga0164304_109239901 | 3300012986 | Soil | MKTLRSVVLGLALVTLLTGLSACAKRPLVLGNSSAPAPSAAVAPAPTR* |
Ga0157376_108946111 | 3300014969 | Miscanthus Rhizosphere | KEEAMKTRLKAVVLGLALVTLLTGLSACAKRPMVIGGSSPAPAPSAAVTPQPTR* |
Ga0163161_119455492 | 3300017792 | Switchgrass Rhizosphere | MKTLKSVVLGLALVTLLTGLSACAKRPMVLGNSSAPAPSAAVTPAPTR |
Ga0187775_100165663 | 3300017939 | Tropical Peatland | MNTRLKAAVLGFALFSLLTGLSACAKRPMVIGSSSAPAPTASVAPEPTR |
Ga0066655_100037356 | 3300018431 | Grasslands Soil | MNTHLKSMALGLALITLLTGLSACAKRPLVVGGSPAPAPSAAVTPVPTR |
Ga0066655_105095371 | 3300018431 | Grasslands Soil | MYAHLKSVVLGLALVTLLAGLSACAKRPMVIGGSSAPAPSAAVAPAPTR |
Ga0066667_110529241 | 3300018433 | Grasslands Soil | MKAHLKSVVLGLALVTVLAGLSACAKRPMVIGGSSAPAPSAAVAPAPTR |
Ga0137408_127591810 | 3300019789 | Vadose Zone Soil | MNAHMKSVVLGLALVTVLAGLSACAKRPMVVGGSSAPAPSAAVAPEPTR |
Ga0247691_10670561 | 3300024222 | Soil | MKTRLKAVVLGLALVTLLTGLSACAKRPMVIGGSSPAPAPSAAVTPQPT |
Ga0207684_100591904 | 3300025910 | Corn, Switchgrass And Miscanthus Rhizosphere | MKAHLKSVVLGLALVTVLAGLSACAKRPMVIGGSSAPAPSAAVAPSPTR |
Ga0207684_105361201 | 3300025910 | Corn, Switchgrass And Miscanthus Rhizosphere | LTRKEGGRLMYAHLKSVVLGLALVTLFAGLSACAKRPMVIGGSSAPAPSAAVAPAPTR |
Ga0207681_102522273 | 3300025923 | Switchgrass Rhizosphere | MKTLKSVVLGLALVTLLTGLSACAKRPLVLGNSSAPAPSAAVTPAPTR |
Ga0209055_10657482 | 3300026309 | Soil | MYAHLKSVVLGLALVTLLAGLSACAKRPMVIGGSSAPSPSAAVAPAPAR |
Ga0209239_11235872 | 3300026310 | Grasslands Soil | MNTQLKSVALGLALISLLTGLSACAKRPLVIGGSPAPAPSAAVTPAPTR |
Ga0209686_11676412 | 3300026315 | Soil | VLGLALVTLLAGLSACAKRPMVIGGSSAPSPSAAVAPAPAR |
Ga0209154_13156882 | 3300026317 | Soil | LGLALVTLLAGLSACAKRPMVIGGSSAPSPSAAVAPAPAR |
Ga0209470_11433502 | 3300026324 | Soil | MNASLKTMVLGLALVTVLAGLSACAKRPMVIGGSSAPAPSASVTPAPTR |
Ga0257166_10432822 | 3300026358 | Soil | MYAQLKSVVLGLALITLLAGLSACAKRPMVIGGSSAPAPSAAVAPAPTR |
Ga0209806_12523991 | 3300026529 | Soil | LGLALVTVLAGLSACAKRPMVIGGSSAPAPSAAVAPAPTR |
Ga0209160_11534681 | 3300026532 | Soil | MYAHLKSVVLGLALVTLFAGLSACAKRPMVIGGSSAPAPSAAVAPAPTR |
Ga0209160_11647201 | 3300026532 | Soil | RRTTMKAHLKSVVLGLALVTVLAGLSACAKRPMVIGGSSAPAPSAAVAPSPTR |
Ga0209157_11530771 | 3300026537 | Soil | VVLGLALVTVLAGLSACAKRPMVIGGSSAPSPSAAVAPAPAR |
Ga0208991_11110282 | 3300027681 | Forest Soil | MYAHLKSVVLGLALVTLLTGLSACAKRPMVIGGASAPAPSAAVAPAPTR |
Ga0209814_100122244 | 3300027873 | Populus Rhizosphere | MKALKSMALGLALVSVLAGLSACAKRPVVLGSSPAPAPSAAATPAR |
Ga0209814_100954632 | 3300027873 | Populus Rhizosphere | MNALKSVMLGLALVGVLAGLSACAKRPLVIGGAPAPAPSAAVSPAPAR |
Ga0209465_101013392 | 3300027874 | Tropical Forest Soil | MKTHVKSVVLGLALITLLTGLSACAKRPLVVGGSPAPSPSAAVAPDTTR |
Ga0209488_102538583 | 3300027903 | Vadose Zone Soil | MYAQLKSVVLGLALITLLAGLSACAKRPMVVGGSSVPAPSAAVTPAPTR |
Ga0209382_105349222 | 3300027909 | Populus Rhizosphere | MYAHLKSVALGLALVTLLAGLSACAKRPVVIGGSSAPAPSAAATPAPTR |
(restricted) Ga0255311_10369421 | 3300031150 | Sandy Soil | MYAQLKPVVLGLALITLLAGLSACAKRPMVISGSSAPAPSAAVAPTPTR |
(restricted) Ga0255310_101893051 | 3300031197 | Sandy Soil | MYAQLKSVVLGLALITLLAGLSACAKRPMVISGSSAPAPSAAVAPTPTR |
(restricted) Ga0255312_10820282 | 3300031248 | Sandy Soil | MYAQLKPVVLGLALITLLAGLSACAKRPMVIGGSSAPAPSAAVAPAPTR |
Ga0318516_102942431 | 3300031543 | Soil | MKTHVKSMVLGLALITLLTGLSACAKRPLVIGGSPAPSPSAAVAPDTTR |
Ga0307469_107290372 | 3300031720 | Hardwood Forest Soil | MNAHLKSVALGLALVTLLAGLSACAKRPMVIGGSPAPAPSAAVAPAPTR |
Ga0307469_109898681 | 3300031720 | Hardwood Forest Soil | MNTQLKSVVLGLALITLLTGLSACAKRPMVIGGSPAPAPSAAATPAPAR |
Ga0307469_114425991 | 3300031720 | Hardwood Forest Soil | MKTLKSVVLGLALVTLLTGLSACAKRPLVLGNSPAPAPSAAVTPAPTR |
Ga0307469_124916901 | 3300031720 | Hardwood Forest Soil | MKTLKSVVLGLALVTLLTGLSACAKRPMVIGGNSSAPAPSAAVTPAPTR |
Ga0307468_1004314572 | 3300031740 | Hardwood Forest Soil | MNASLKTMVLGLALVTVLAGLSACAKRPMVIGGSSAPAPSASVTPVPTR |
Ga0307468_1024482581 | 3300031740 | Hardwood Forest Soil | MKTLKSVVLGLALVTLLTGISACAKRPLVLGNSSAPAPSAAAAPAPTR |
Ga0307473_104779852 | 3300031820 | Hardwood Forest Soil | MKAHLKSVVLGLALVTVLAGLSACAKRPMVIGGSSAPAPSASVTPAPTR |
Ga0310884_104458442 | 3300031944 | Soil | MKTLKAVVLGLALVTLLTGLSACAKRPLVLGNSSAPAPSAAVAPAPTR |
Ga0307471_1013536901 | 3300032180 | Hardwood Forest Soil | MNASLKTMVLGLALVTVLAGLSACAKRPMVIGGSSAPAPS |
Ga0307472_1000388562 | 3300032205 | Hardwood Forest Soil | MKSVALALAFITLLTGLSACARRPVVVGGSPAPAPSAAVTPAPTR |
Ga0335085_113580712 | 3300032770 | Soil | MKTRLKAVVLGLAVVTLLTGLSACAKRPMVIGGASAPAPSAAVTSQPAR |
Ga0314780_082114_3_131 | 3300034659 | Soil | VVLGLALVTLLTGLSACAKRPLVLGNSSAPAPSAAVAPAPTR |
Ga0314783_158843_377_526 | 3300034662 | Soil | AMKTLRSVVLGLALVTLLTGLSACAKRPLVLGNSSAPAPSAAVAPAPTR |
Ga0314793_116387_62_214 | 3300034668 | Soil | MAMKTLRSVVLGLALVTLLTGLSACAKRPLVLGNSSAPAPSAAVAPAPTR |
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