Metagenome Family F083860

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F083860
Family Type	Metagenome
Number of Sequences	112
Average Sequence Length	46 residues
Representative Sequence	MDRKQLMKTYVLFVAALGAAALAQSLRTLNLAHVDPLMLVILIGLAAAA
Number of Associated Samples	81
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	99.11 %
% of genes from short scaffolds (< 2000 bps)	71.43 %
Associated GOLD sequencing projects	75
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (95.536 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (16.964 % of family members)
Environment Ontology (ENVO)	Unclassified (30.357 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (52.679 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 53.25% β-sheet: 0.00% Coil/Unstructured: 46.75%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.42
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.42
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF00082	Peptidase_S8	80.36
PF02729	OTCace_N	2.68
PF01865	PhoU_div	2.68
PF13487	HD_5	0.89
PF01061	ABC2_membrane	0.89
PF01266	DAO	0.89
PF13432	TPR_16	0.89
PF01384	PHO4	0.89
PF00005	ABC_tran	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG1392	Phosphate transport regulator YkaA, distantly related to PhoU, UPF0111/DUF47 family	Inorganic ion transport and metabolism [P]	2.68
COG0306	Phosphate/sulfate permease	Inorganic ion transport and metabolism [P]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	95.54 %
Unclassified	root	N/A	4.46 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	95.54 %
Unclassified	root	N/A	4.46 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	95.54 %
Unclassified	root	N/A	4.46 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	43.75 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	25.89 %
Unclassified	root	N/A	4.46 %

Name	Rank	Taxonomy	Distribution
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	40.18 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	25.89 %
Unclassified	root	N/A	4.46 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2.68 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	25.89 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	8.04 %
Unclassified	root	N/A	4.46 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	0.89 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	25.89 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	8.04 %
Unclassified	root	N/A	4.46 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	0.89 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	25.89 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	8.04 %
Unclassified	root	N/A	4.46 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	0.89 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_109475906	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300002907\|JGI25613J43889_10226383	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300005172\|Ga0066683_10166527	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1357	Open in IMG/M
3300005180\|Ga0066685_10070050	All Organisms → cellular organisms → Bacteria	2296	Open in IMG/M
3300005180\|Ga0066685_10088832	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2050	Open in IMG/M
3300005180\|Ga0066685_10621628	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	743	Open in IMG/M
3300005330\|Ga0070690_101394921	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	564	Open in IMG/M
3300005336\|Ga0070680_100965710	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	735	Open in IMG/M
3300005445\|Ga0070708_100969664	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	797	Open in IMG/M
3300005445\|Ga0070708_101624133	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	601	Open in IMG/M
3300005446\|Ga0066686_10397751	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	941	Open in IMG/M
3300005458\|Ga0070681_10278255	All Organisms → cellular organisms → Bacteria	1584	Open in IMG/M
3300005467\|Ga0070706_100069181	All Organisms → cellular organisms → Bacteria	3265	Open in IMG/M
3300005467\|Ga0070706_100166032	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2061	Open in IMG/M
3300005467\|Ga0070706_100887797	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	824	Open in IMG/M
3300005468\|Ga0070707_100485170	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1197	Open in IMG/M
3300005471\|Ga0070698_101331299	Not Available	668	Open in IMG/M
3300005536\|Ga0070697_100392485	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1203	Open in IMG/M
3300005546\|Ga0070696_100165750	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1630	Open in IMG/M
3300005555\|Ga0066692_10149200	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1434	Open in IMG/M
3300006845\|Ga0075421_100003517	All Organisms → cellular organisms → Bacteria	18760	Open in IMG/M
3300006845\|Ga0075421_100277280	All Organisms → cellular organisms → Bacteria	2046	Open in IMG/M
3300006847\|Ga0075431_100008203	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	10438	Open in IMG/M
3300006852\|Ga0075433_10256979	All Organisms → cellular organisms → Bacteria	1549	Open in IMG/M
3300006852\|Ga0075433_10343930	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1318	Open in IMG/M
3300006852\|Ga0075433_10656555	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	919	Open in IMG/M
3300006854\|Ga0075425_101132404	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	890	Open in IMG/M
3300006876\|Ga0079217_10814167	All Organisms → cellular organisms → Bacteria	651	Open in IMG/M
3300006894\|Ga0079215_10043521	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1697	Open in IMG/M
3300006894\|Ga0079215_10981511	Not Available	618	Open in IMG/M
3300006969\|Ga0075419_10002822	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	11132	Open in IMG/M
3300006969\|Ga0075419_10082192	All Organisms → cellular organisms → Bacteria	2052	Open in IMG/M
3300007004\|Ga0079218_10574289	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1021	Open in IMG/M
3300007255\|Ga0099791_10010250	All Organisms → cellular organisms → Bacteria	3910	Open in IMG/M
3300007265\|Ga0099794_10133829	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1253	Open in IMG/M
3300009012\|Ga0066710_100109371	All Organisms → cellular organisms → Bacteria	3727	Open in IMG/M
3300009012\|Ga0066710_100321160	All Organisms → cellular organisms → Bacteria	2277	Open in IMG/M
3300009012\|Ga0066710_100390021	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2072	Open in IMG/M
3300009012\|Ga0066710_102933441	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	667	Open in IMG/M
3300009100\|Ga0075418_10673106	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1115	Open in IMG/M
3300009147\|Ga0114129_10063864	All Organisms → cellular organisms → Bacteria	5139	Open in IMG/M
3300009147\|Ga0114129_10322962	All Organisms → cellular organisms → Bacteria	2052	Open in IMG/M
3300009147\|Ga0114129_10326760	All Organisms → cellular organisms → Bacteria	2038	Open in IMG/M
3300009147\|Ga0114129_10366221	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1906	Open in IMG/M
3300009162\|Ga0075423_10459873	All Organisms → cellular organisms → Bacteria	1338	Open in IMG/M
3300010336\|Ga0134071_10438165	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	669	Open in IMG/M
3300010399\|Ga0134127_10355882	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1432	Open in IMG/M
3300010399\|Ga0134127_12013076	All Organisms → cellular organisms → Bacteria	655	Open in IMG/M
3300010399\|Ga0134127_12717928	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	575	Open in IMG/M
3300010399\|Ga0134127_12832250	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	564	Open in IMG/M
3300010403\|Ga0134123_12818057	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	555	Open in IMG/M
3300012189\|Ga0137388_10984791	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	778	Open in IMG/M
3300012203\|Ga0137399_10707127	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	848	Open in IMG/M
3300012204\|Ga0137374_10077691	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	3234	Open in IMG/M
3300012208\|Ga0137376_10142651	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2056	Open in IMG/M
3300012211\|Ga0137377_10017083	All Organisms → cellular organisms → Bacteria	6313	Open in IMG/M
3300012211\|Ga0137377_10620137	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1018	Open in IMG/M
3300012351\|Ga0137386_10559816	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	823	Open in IMG/M
3300012353\|Ga0137367_10792461	Not Available	658	Open in IMG/M
3300012355\|Ga0137369_10738644	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
3300012360\|Ga0137375_10516549	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1013	Open in IMG/M
3300012532\|Ga0137373_10034302	All Organisms → cellular organisms → Bacteria	4888	Open in IMG/M
3300012685\|Ga0137397_10170554	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1616	Open in IMG/M
3300015245\|Ga0137409_10354174	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1279	Open in IMG/M
3300015358\|Ga0134089_10371927	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	606	Open in IMG/M
3300017997\|Ga0184610_1243359	Not Available	599	Open in IMG/M
3300018027\|Ga0184605_10128045	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1134	Open in IMG/M
3300018028\|Ga0184608_10393374	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300018052\|Ga0184638_1242720	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	623	Open in IMG/M
3300018071\|Ga0184618_10068586	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1332	Open in IMG/M
3300018072\|Ga0184635_10390652	Not Available	528	Open in IMG/M
3300018076\|Ga0184609_10166752	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1018	Open in IMG/M
3300018076\|Ga0184609_10280982	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	779	Open in IMG/M
3300018078\|Ga0184612_10370058	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	724	Open in IMG/M
3300022694\|Ga0222623_10027033	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2164	Open in IMG/M
3300022694\|Ga0222623_10161008	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	873	Open in IMG/M
3300022694\|Ga0222623_10166339	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	858	Open in IMG/M
3300025167\|Ga0209642_10312983	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	891	Open in IMG/M
3300025904\|Ga0207647_10516849	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	665	Open in IMG/M
3300025907\|Ga0207645_10820423	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	632	Open in IMG/M
3300025910\|Ga0207684_10710449	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	854	Open in IMG/M
3300025917\|Ga0207660_10063773	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2658	Open in IMG/M
3300025917\|Ga0207660_10827874	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	755	Open in IMG/M
3300025923\|Ga0207681_11379635	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	592	Open in IMG/M
3300025934\|Ga0207686_10262318	All Organisms → cellular organisms → Bacteria	1267	Open in IMG/M
3300025938\|Ga0207704_10582056	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	914	Open in IMG/M
3300025960\|Ga0207651_10353332	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1238	Open in IMG/M
3300026075\|Ga0207708_10751906	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	837	Open in IMG/M
3300026323\|Ga0209472_1038457	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2130	Open in IMG/M
3300026324\|Ga0209470_1000848	All Organisms → cellular organisms → Bacteria	23844	Open in IMG/M
3300026324\|Ga0209470_1047217	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2096	Open in IMG/M
3300026343\|Ga0209159_1051230	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2028	Open in IMG/M
3300026540\|Ga0209376_1200317	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	908	Open in IMG/M
3300027695\|Ga0209966_1065744	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	789	Open in IMG/M
3300027873\|Ga0209814_10215767	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	830	Open in IMG/M
3300027875\|Ga0209283_10021690	All Organisms → cellular organisms → Bacteria	3944	Open in IMG/M
3300027875\|Ga0209283_10117872	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1747	Open in IMG/M
3300027880\|Ga0209481_10043699	All Organisms → cellular organisms → Bacteria	2060	Open in IMG/M
3300027886\|Ga0209486_10041269	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2272	Open in IMG/M
3300027886\|Ga0209486_10162610	All Organisms → cellular organisms → Bacteria	1238	Open in IMG/M
3300027886\|Ga0209486_10542558	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	729	Open in IMG/M
3300027909\|Ga0209382_10021960	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7734	Open in IMG/M
3300027909\|Ga0209382_10333929	All Organisms → cellular organisms → Bacteria	1702	Open in IMG/M
3300028796\|Ga0307287_10088284	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1166	Open in IMG/M
3300028819\|Ga0307296_10268569	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	929	Open in IMG/M
3300028828\|Ga0307312_10294875	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1055	Open in IMG/M
3300028828\|Ga0307312_10306093	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1035	Open in IMG/M
3300028881\|Ga0307277_10048989	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1719	Open in IMG/M
3300028884\|Ga0307308_10267021	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	820	Open in IMG/M
3300032180\|Ga0307471_102418096	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	664	Open in IMG/M
3300033233\|Ga0334722_10004961	All Organisms → cellular organisms → Bacteria	13623	Open in IMG/M
3300033233\|Ga0334722_10046677	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3446	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	76.79%
Host-Associated	Host-Associated	23.21%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	64.29%
Plants	Host-Associated → Plants	23.21%
Aquatic	Environmental → Aquatic	12.50%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	64.29%
Rhizosphere	Host-Associated → Plants → Rhizosphere	20.54%
Sediment	Environmental → Aquatic → Sediment	10.71%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.68%
Freshwater	Environmental → Aquatic → Freshwater	1.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	49.11%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	17.86%
Loam	Environmental → Terrestrial → Soil → Loam	15.18%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	10.71%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.68%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.68%
Lake	Environmental → Aquatic → Freshwater → Lake	1.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	17.86%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	15.18%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	14.29%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	10.71%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.25%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.68%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	1.79%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.89%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	16.96%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	15.18%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	10.71%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	9.82%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	8.04%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	6.25%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.36%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.46%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.46%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.57%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.68%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	1.79%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.79%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.89%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.89%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002907	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300025167	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 19_2 (SPAdes)	Environmental	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026343	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)	Environmental	Open in IMG/M
3300026540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)	Environmental	Open in IMG/M
3300027695	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes)	Host-Associated	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033233	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottom	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1094759062	3300000956	Soil	MRQGLRPYVLFVAALGGAAVAQSLRTLSFERVDPLMLAILIGLAAAAQRMPVFLFRSS
JGI25613J43889_102263832	3300002907	Grasslands Soil	MRQGLRIYVLFVAALGAAALAQSLRTISLSHVDPLMLLILVALAAAAQRMPVFLFRSS
Ga0066683_101665272	3300005172	Soil	MRQGLRAYVLFVAALGALALAQSLRTLSLAHVDPLMLVILV
Ga0066685_100700503	3300005180	Soil	MDRTQLMKTYVLFVAALGALALAQSLRTLSLAHVDPLMLAILVALAAAAQ
Ga0066685_100888323	3300005180	Soil	MRQGLRAYVLFVAALGALALAQSLRTLSLAHVDPLMLAILVALAAAAQ
Ga0066685_106216281	3300005180	Soil	MDRKQLMKTYVLFVAALGALALAQSLRTLSLAHVDPLMLAILIGLAAAAQ
Ga0070690_1013949212	3300005330	Switchgrass Rhizosphere	MDRKQLMKTYVLFVAALGAAALAQSLRTLNLAHVDPLMLV
Ga0070680_1009657102	3300005336	Corn Rhizosphere	MDRKQLMKTYVLFVAALGAAALAQSLRTLNLAHVDPLMLVILIGL
Ga0070708_1009696641	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MDRKQLMKTYVLFVAGLGALALAQSLRTLSLVHVDPLMLAILIALAAAAQ
Ga0070708_1016241331	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MRQGLGLYVLFVAGLGALALAQSLRTLSLVHVDPLMLAILIALAAA
Ga0066686_103977511	3300005446	Soil	MRQGLRVYVLFVAALGALALAQSLRTLSLAHVDPLMLAILIGLAAAAQ
Ga0070681_102782551	3300005458	Corn Rhizosphere	MRQGVRVYVLFVAALGAAALAQSLRTLNLAHVDPLMLVILIGLAAAAQRMPV
Ga0070706_1000691814	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MDRKQLLKTYVLFVAALGALALAQSLRTLSLVHVDPLMLAILIALAAAAQ
Ga0070706_1001660323	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MRQGLRFYVLFVAALGALALAQSLRTLSLVHVDPLMLAILIALAAAAQ
Ga0070706_1008877972	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MRQELRFYVLFVAALGAAALAQSLRTVSLAHVDPLMLAILIGLAAAAQR
Ga0070707_1004851701	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MRQGLRLYVLFVAGLGALALAQSLRTLSLVHVDPLMLAILIALAAAAQ
Ga0070698_1013312992	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MTSGLRVYVLFVAALGAAALAQSLRTLNLSHVDPLMLVILIALA
Ga0070697_1003924851	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MDRKQLIKTYVLFVAALGAAALAQSLRTLNLSHVDPLMLVILIALAAAA
Ga0070696_1001657502	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MDRKQLMKTYVLFVAALGAAALAQSLRTLNLAHVDPLMLVILIGLAAAAQRMPVFL
Ga0066692_101492002	3300005555	Soil	MRQGLRAYVLFVAALGALALAQSLRTLSLAHVDPLMLAILVALA
Ga0075421_10000351723	3300006845	Populus Rhizosphere	MDRKQLVKTYILFVAALGAAALAQSLRTVSFDRVDPLMLVILIGLAAAA
Ga0075421_1002772803	3300006845	Populus Rhizosphere	MRQELRLYILFVAALGAAALAQSLRTVSFDRVDPLMLVILIGLAAAA
Ga0075431_1000082031	3300006847	Populus Rhizosphere	MDRKQLVKTYILFVAALGAAALAQSLRTVSFDRVDPLMLVILIGL
Ga0075433_102569791	3300006852	Populus Rhizosphere	MTTALRFYVLFVAALGAAALAQSLRTLNLAHVDPLMLVILIALAAAA
Ga0075433_103439301	3300006852	Populus Rhizosphere	MDRKQLIKAYVLFVAALGAAALAQSLRTLNLAHVDPLMLVILIALAAAA
Ga0075433_106565552	3300006852	Populus Rhizosphere	MRQGLRLYVLFVAGLGALALAQSLRTLSLVHVDPLMLAILIALAAAAQR
Ga0075425_1011324042	3300006854	Populus Rhizosphere	MDRKQLMKTYVLFVAGLGALALAQSLRTLSLVHVDPLMLAILIA
Ga0079217_108141671	3300006876	Agricultural Soil	MRQGLRFYVLFVAALGAAALAQSLRTVSFDRVDPLMLAILIGLAAAAQRMPVFLFCSSAI
Ga0079215_100435212	3300006894	Agricultural Soil	MDRTQLMKTYVLFVAALGAAALAQSLRTVSFERVDPLMLAILIGLAAAAQ
Ga0079215_109815112	3300006894	Agricultural Soil	MRQELRFYVLFVAALGAAALSQSLRTVCFERVDPLMLAILIGLAAAAQRMPVFLFR
Ga0075419_100028221	3300006969	Populus Rhizosphere	MDRKQLVKTYILFVAALGAAALAQSLRTVSFDRVDPLMLVILIGLAAAAQ
Ga0075419_100821923	3300006969	Populus Rhizosphere	MRQELRLYILFVAALGAAALAQSLRTVSFDRVDPLMLVILIGLAAAAQ
Ga0079218_105742892	3300007004	Agricultural Soil	MRQELRFYVLFVAALGAAALAQSLRTVSFDRVDPFMLAILIGLAAAAQ
Ga0099791_100102505	3300007255	Vadose Zone Soil	MDRKQLMKTYVLFVAGLGAVALAQSLRTLSLVHVDPLMLAILIALAA
Ga0099794_101338291	3300007265	Vadose Zone Soil	VLFVAGLGAVALAQSLRTLSLVHVDPLMLAILIALAAA
Ga0066710_1001093711	3300009012	Grasslands Soil	MDRKQLMKTYVLFVAALGALALAQSLRTLSLVHVDPLMLAILIGLAAAAQ
Ga0066710_1003211601	3300009012	Grasslands Soil	MDRTQLMKTYVLFVAALGALALAQSLRTLSLAHVDPLMLAILVALAAAAQR
Ga0066710_1003900211	3300009012	Grasslands Soil	MRQGLRVYVLFVAALGALALAQSLRTLSLAHVDPLMLAILIGLAAAAQR
Ga0066710_1029334411	3300009012	Grasslands Soil	MDRKQLMKTYVLFVAALGALALAQSLRTLSLAHVDPLMLAILIGLAAAAQR
Ga0075418_106731061	3300009100	Populus Rhizosphere	LYILFVAALGAAALAQSLRTVSFDRVDPLMLVILI
Ga0114129_100638646	3300009147	Populus Rhizosphere	MDRKQLIKAYVLFVAALGAAALAQSLRTLNLAHVDPLMLVILIALAAAAQ
Ga0114129_103229623	3300009147	Populus Rhizosphere	LYILFVAALGAAALAQSLRTVSFDRVDPLMLVILIGLAAAAQ
Ga0114129_103267603	3300009147	Populus Rhizosphere	MTTALRFYVLFVAALGAAALAQSLRTLNLAHVDPLMLVILIALAAAAQ
Ga0114129_103662212	3300009147	Populus Rhizosphere	MDRKQLMKTYVLFVAGLGALALAQSLRTLSLVHVDPLMLAILIALAAAAQR
Ga0075423_104598732	3300009162	Populus Rhizosphere	MTTALRFYVLFVAALGAAALAQSLRTLNLAHVDPLMLVILIALA
Ga0134071_104381652	3300010336	Grasslands Soil	MDRKQLMQTYVLFVAALGALALAQSLRTLSLTHVDPLMLAILIALAAAA
Ga0134127_103558822	3300010399	Terrestrial Soil	MDRKQLMKTYVLFVAALGAAALAQSLRTLNLAHVDPLMLVILIGLAA
Ga0134127_120130761	3300010399	Terrestrial Soil	MRQELRFYVLFVAALGAAALAQSLRTVSLAHVDPLMLAILIGLAAAAQRMPVFLFRS
Ga0134127_127179281	3300010399	Terrestrial Soil	MDRKQLMKTYVLFVAALGAAALAQSLRTLNLAHVDPLMLVI
Ga0134127_128322501	3300010399	Terrestrial Soil	MDRKQLMKTYVLFVAALGAAALAQSLRTLNLAHVDPL
Ga0134123_128180571	3300010403	Terrestrial Soil	MTSGLRVYVLFVAALGAAALAQSLRTLNLAHVDPLMLVILI
Ga0137388_109847911	3300012189	Vadose Zone Soil	VRQGLRLYVLFVAGLGAVALAQSLRTLSLVHVDPL
Ga0137399_107071272	3300012203	Vadose Zone Soil	MDRKQLVKIFVLFVAALGAAALAQSLRTLSLERVDPLMLVILVGLAAAAQRM
Ga0137374_100776913	3300012204	Vadose Zone Soil	MTSGLRIYVLFVAALGAAALAQSLRTLSLAHVDPLMLVILIG
Ga0137376_101426511	3300012208	Vadose Zone Soil	MRQGLRAYVLFVAALGALALAQSLRTLSLAHVDPLMLAILVALAAAAQR
Ga0137377_100170838	3300012211	Vadose Zone Soil	MDRTQLMKTYVLFVAALGALALAQSLRTLSLAHVDP
Ga0137377_106201371	3300012211	Vadose Zone Soil	VTNGLRVYVLFVAALGALALAQSLRTLSLAHVDPLMLAIL
Ga0137386_105598162	3300012351	Vadose Zone Soil	MRQGLRVYVLFVAALGALALAQSLRTLSLAHVDPL
Ga0137367_107924612	3300012353	Vadose Zone Soil	MDRKQLVKTYVLFVAALGAAALAQSLRTLSLERVDPLML
Ga0137369_107386441	3300012355	Vadose Zone Soil	MRLGLRIYVLFIAALGAAALAQSLRTLSLAHVDPLMLVI
Ga0137375_105165491	3300012360	Vadose Zone Soil	MDRKQLVKTYVLFVATLGAAALAQSLRTLSLERVDPLMLAILI
Ga0137373_100343025	3300012532	Vadose Zone Soil	MERKQLMKTYVLFVAALGAAALAQSLRTLSLAHVDPLMLVILI
Ga0137397_101705541	3300012685	Vadose Zone Soil	MERKQLMKNYVLFVAALGAAALAQSLRTVSLEHVDPLMLLILVALAAAAQRMPVFLF
Ga0137409_103541741	3300015245	Vadose Zone Soil	MDRTQLMKTYVLFVAALGALALAQFLRTLSLAHVVPL
Ga0134089_103719272	3300015358	Grasslands Soil	MRQGLRVYVLFVAALGALALAQSLRTLSLAHVDPLMLAILIGL
Ga0184610_12433592	3300017997	Groundwater Sediment	MDREQLVKIYVLFVAALGAAALAQSLRTLNLAHVDPLMLVILIALAAAAQR
Ga0184605_101280451	3300018027	Groundwater Sediment	MRQGLRFYVLFVAALGAAALAQSLRTVSFERVDPLMLAILIG
Ga0184608_103933742	3300018028	Groundwater Sediment	MRQGLRVYVLFVAALGAAALAQSLRTLNLAHVDPLMLVILISLAAAAQRMPVFLFR
Ga0184638_12427202	3300018052	Groundwater Sediment	MDRKQLIKTYVLFVAALGAAALAQSLRTLNLAHVDPLMLVILIALAAAAQR
Ga0184618_100685862	3300018071	Groundwater Sediment	MERKQVMKTYVLFVAALGAAALAQSLRTLNLAHVDPLMLVILI
Ga0184635_103906521	3300018072	Groundwater Sediment	MTSGLRFYVLFVAALGAAALAQSLRTLNLAHVDPLMLVILIALAAAAQRMP
Ga0184609_101667521	3300018076	Groundwater Sediment	VDRKQLIKTYVLFVAALGAAALAQSLRTLNLAHVDP
Ga0184609_102809822	3300018076	Groundwater Sediment	MERQQLMKTYVLFVAALGAAALAQSLRTLNLAHVDPLMLAILIGLA
Ga0184612_103700582	3300018078	Groundwater Sediment	VDRKQLIKTYVLFVAALGAAALAQSLRTVSLERVDPLMLAILIGLAA
Ga0222623_100270332	3300022694	Groundwater Sediment	MERQQLMKTYVLFVAALGAAALAQSLRTLNLATSTR
Ga0222623_101610082	3300022694	Groundwater Sediment	MERKQLMKTYVLFVAALGAAALAQSLRTVSLEGVDPLMLAILIGLAAAA
Ga0222623_101663391	3300022694	Groundwater Sediment	MTSGLRIYVLFVAALGAAALAQSLRTLNLSHVDPLMLVILI
Ga0209642_103129832	3300025167	Soil	MRQGLRFYVLFIAALGAAALAQSLRTVSFERVDPLMLAIL
Ga0207647_105168492	3300025904	Corn Rhizosphere	MDRKQLMKTYVLFVAALGAAALAQSLRTLNLAHVDPLMLVILIALAAAAQ
Ga0207645_108204231	3300025907	Miscanthus Rhizosphere	MDRKQLMKTYVLFVAALGAAALAQSLRTLNLAHVDPLML
Ga0207684_107104491	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MDRKQLMKTYVLFVAGLGALALAQSLRTLSLVHVDPLMLAILI
Ga0207660_100637731	3300025917	Corn Rhizosphere	MRQGVRVYVLFVAALGAAALAQSLRTLNLAHVDPLMLVIL
Ga0207660_108278741	3300025917	Corn Rhizosphere	MDRKQLMKTYVLFVAALGAAALAQSLRTLNLAHVDPLMLVILIGLAAAA
Ga0207681_113796352	3300025923	Switchgrass Rhizosphere	MDRKQLMKTYVLFVAALGAAALAQSLRTLNLAHVDPLMLVILIALAAAAQRMPVFLFR
Ga0207686_102623181	3300025934	Miscanthus Rhizosphere	MTSGLRVYVLFVAALGAAALAQSLRTLNLAHVDPLM
Ga0207704_105820562	3300025938	Miscanthus Rhizosphere	MDRKQLMKTYVLFVAALGAAALAQSLRTLNLAHVDP
Ga0207651_103533321	3300025960	Switchgrass Rhizosphere	MDRKQLMKTYVLFVAALGAAALAQSLRTLNLAHVD
Ga0207708_107519062	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MDRKQLMKTYVLFVAALGAAALAQSLRTLNLAHVDPLMLVIL
Ga0209472_10384573	3300026323	Soil	MDRTQLMKTYVLFVAALGALALAQSLRTLSLAHVDPLMLAILVALAAAAQRM
Ga0209470_10008481	3300026324	Soil	MDRKQLMKTYVLFVAALGALALAQSLRTLSLAHVDPLMLAILIGLAAAAQRM
Ga0209470_10472171	3300026324	Soil	MRQGLRVYVLFVAALGALALAQSLRTLSLAHVDPLMLAILIGLAAAAQRM
Ga0209159_10512301	3300026343	Soil	MRQGLRAYVLFVAALGALALAQSLRTLSLAHVDPLMLA
Ga0209376_12003171	3300026540	Soil	MRQGLRAYVLFVAALGALALAQSLRTLSLAHVDPLMLAILVALAAAAQRM
Ga0209966_10657441	3300027695	Arabidopsis Thaliana Rhizosphere	MDRKQLMKTYVLFVAALGAAALAQSLRTLNLAHVDPLMLVILIGLA
Ga0209814_102157672	3300027873	Populus Rhizosphere	MDRKQLVKTYILFVAALGAAALAQSLRTVSFDRVDPLMLVI
Ga0209283_100216905	3300027875	Vadose Zone Soil	MDRKTLIKTYVLFVAGLGAVALAQSLRTLSLVHVD
Ga0209283_101178722	3300027875	Vadose Zone Soil	VRQGLRLYVLFVAGLGAVALAQSLRTLSLVHVDPLMLAILIALAAA
Ga0209481_100436993	3300027880	Populus Rhizosphere	MRQELRLYILFVAALGAAALAQSLRTVSFDRVDPLMLVILIGLAAAAQR
Ga0209486_100412691	3300027886	Agricultural Soil	MDRTQLMKTYVLFVAALGAAALAQSLRTVSFERVDPLMLAILIGLAAAAQR
Ga0209486_101626101	3300027886	Agricultural Soil	MRQELRFYVLFVAALGAAALAQSLRTVSFERVDPLMLAILIGLAAAAQR
Ga0209486_105425581	3300027886	Agricultural Soil	MDRKQLVKTYVLFVAALGAAALAQSLRTVSLERVDPLMLAILIGLAAAAQR
Ga0209382_100219601	3300027909	Populus Rhizosphere	MDRKQLVKTYILFVAALGAAALAQSLRTVSFDRVDPLMLVIL
Ga0209382_103339291	3300027909	Populus Rhizosphere	MRQELRLYILFVAALGAAALAQSLRTVSFDRVDPLMLVILI
Ga0307287_100882841	3300028796	Soil	MRQGLRVYVLFVAALGAAALAQSLRTLNLAHVDPLMLVILISLAAAAQR
Ga0307296_102685692	3300028819	Soil	VYVLFVAALGAAALAQSLRTLNLSHVDPLMLVILIGLAAAA
Ga0307312_102948752	3300028828	Soil	MERKQVMKTYVLFVAALGAAALAQSLRTLNLAHVDPLM
Ga0307312_103060932	3300028828	Soil	MDRKQLVKTYVLFVAALGAAALAQSLRTLNLSHVDPLMLVILIGLAAAAQR
Ga0307277_100489891	3300028881	Soil	MRQGLRFYVLFIAALGAAALAQSLRTVSFERVDPLMLAILIGLAAAAQRI
Ga0307308_102670212	3300028884	Soil	MDRKQLVKTYVLFVAALGAAALAQSLRTLNLSHVDPLMLVILIGLAA
Ga0307471_1024180962	3300032180	Hardwood Forest Soil	MDRKQLMKTYVLFVAALGAAALAQSLRTLSLSHVDPLMLVILI
Ga0334722_1000496117	3300033233	Sediment	VKLGQYVLTVAALGAVVLAQSARSVSFDGVDPLMLAI
Ga0334722_100466774	3300033233	Sediment	MGKDQDEKGQREVNRLQLYVLTVAALGAVVLAQSARSVSFDGVDPLMLAILIG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F083860

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences