Metagenome Family F083852

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F083852
Family Type	Metagenome
Number of Sequences	112
Average Sequence Length	94 residues
Representative Sequence	QTGGNPWWQALLTAGSMIVVVNSVLAGVVAGLLWRSVAGPSGPLPLALAAAVGFLLSLVSQGIYGQRAFRRDLDASTVAFPAGPAGNQDR
Number of Associated Samples	77
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	3.57 %
% of genes near scaffold ends (potentially truncated)	91.07 %
% of genes from short scaffolds (< 2000 bps)	91.07 %
Associated GOLD sequencing projects	72
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (58.929 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (34.821 % of family members)
Environment Ontology (ENVO)	Unclassified (38.393 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (46.429 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 57.63% β-sheet: 0.00% Coil/Unstructured: 42.37%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF14329	DUF4386	3.57
PF07411	DUF1508	2.68
PF00561	Abhydrolase_1	2.68
PF07732	Cu-oxidase_3	1.79
PF13411	MerR_1	0.89
PF00326	Peptidase_S9	0.89
PF14310	Fn3-like	0.89
PF12697	Abhydrolase_6	0.89
PF08240	ADH_N	0.89
PF04519	Bactofilin	0.89
PF13683	rve_3	0.89
PF12681	Glyoxalase_2	0.89
PF01965	DJ-1_PfpI	0.89
PF03899	ATP-synt_I	0.89
PF07592	DDE_Tnp_ISAZ013	0.89
PF00211	Guanylate_cyc	0.89
PF13586	DDE_Tnp_1_2	0.89
PF00903	Glyoxalase	0.89
PF03551	PadR	0.89
PF03795	YCII	0.89
PF13561	adh_short_C2	0.89
PF17164	DUF5122	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG3422	Uncharacterized conserved protein YegP, UPF0339 family	Function unknown [S]	2.68
COG2132	Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA)	Cell cycle control, cell division, chromosome partitioning [D]	1.79
COG1664	Cytoskeletal protein CcmA, bactofilin family	Cytoskeleton [Z]	0.89
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.89
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.89
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.89
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.89
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.89
COG3312	FoF1-type ATP synthase accessory protein AtpI	Energy production and conversion [C]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	58.93 %
Unclassified	root	N/A	41.07 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	58.93 %
Unclassified	root	N/A	41.07 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	58.93 %
Unclassified	root	N/A	41.07 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	47.32 %
Unclassified	root	N/A	41.07 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.07 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	27.68 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	8.04 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.07 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	17.86 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	8.04 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.07 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	8.04 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	3.57 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	2.68 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	1.79 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.07 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	8.04 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3.57 %
unclassified Pseudonocardiales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales	2.68 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	1.79 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.07 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	8.04 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3.57 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	2.68 %
Geodermatophilus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus	1.79 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.07 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	8.04 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3.57 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	2.68 %
Geodermatophilus aquaeductus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus aquaeductus	1.79 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.89 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_109415223	All Organisms → cellular organisms → Bacteria	827	Open in IMG/M
3300005562\|Ga0058697_10298966	All Organisms → cellular organisms → Bacteria	767	Open in IMG/M
3300005719\|Ga0068861_100967604	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	810	Open in IMG/M
3300005981\|Ga0081538_10007323	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	9558	Open in IMG/M
3300005981\|Ga0081538_10119130	All Organisms → cellular organisms → Bacteria	1273	Open in IMG/M
3300005981\|Ga0081538_10180716	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	903	Open in IMG/M
3300005981\|Ga0081538_10263328	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300005985\|Ga0081539_10100040	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1480	Open in IMG/M
3300006845\|Ga0075421_102663583	Not Available	518	Open in IMG/M
3300006846\|Ga0075430_100080618	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2726	Open in IMG/M
3300009147\|Ga0114129_13120287	Not Available	541	Open in IMG/M
3300009789\|Ga0126307_10435921	Not Available	1057	Open in IMG/M
3300009789\|Ga0126307_10565646	All Organisms → cellular organisms → Bacteria	918	Open in IMG/M
3300009801\|Ga0105056_1010385	All Organisms → cellular organisms → Bacteria	1039	Open in IMG/M
3300009805\|Ga0105079_1035082	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	547	Open in IMG/M
3300009807\|Ga0105061_1046922	All Organisms → cellular organisms → Bacteria → Terrabacteria group	651	Open in IMG/M
3300009818\|Ga0105072_1013479	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1457	Open in IMG/M
3300009840\|Ga0126313_10534796	All Organisms → cellular organisms → Bacteria	941	Open in IMG/M
3300009840\|Ga0126313_10788466	All Organisms → cellular organisms → Bacteria → Terrabacteria group	772	Open in IMG/M
3300009840\|Ga0126313_11459990	Not Available	568	Open in IMG/M
3300010036\|Ga0126305_10724357	Not Available	673	Open in IMG/M
3300010038\|Ga0126315_10167136	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus aquaeductus	1311	Open in IMG/M
3300010039\|Ga0126309_10736612	All Organisms → cellular organisms → Bacteria → Terrabacteria group	637	Open in IMG/M
3300010041\|Ga0126312_10352310	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1043	Open in IMG/M
3300010042\|Ga0126314_10854860	Not Available	671	Open in IMG/M
3300010042\|Ga0126314_11101358	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	591	Open in IMG/M
3300010044\|Ga0126310_11187115	Not Available	612	Open in IMG/M
3300010044\|Ga0126310_11343408	All Organisms → cellular organisms → Bacteria → Terrabacteria group	580	Open in IMG/M
3300010045\|Ga0126311_10122759	All Organisms → cellular organisms → Bacteria	1815	Open in IMG/M
3300010166\|Ga0126306_11036458	Not Available	669	Open in IMG/M
3300010166\|Ga0126306_11759306	Not Available	518	Open in IMG/M
3300011000\|Ga0138513_100073495	Not Available	528	Open in IMG/M
3300012939\|Ga0162650_100047293	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	698	Open in IMG/M
3300014487\|Ga0182000_10399930	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	609	Open in IMG/M
3300014487\|Ga0182000_10616190	Not Available	526	Open in IMG/M
3300018028\|Ga0184608_10315190	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	687	Open in IMG/M
3300018054\|Ga0184621_10098036	Not Available	1034	Open in IMG/M
3300018075\|Ga0184632_10155753	Not Available	1007	Open in IMG/M
3300018078\|Ga0184612_10114112	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1414	Open in IMG/M
3300018081\|Ga0184625_10347763	All Organisms → cellular organisms → Bacteria → Terrabacteria group	771	Open in IMG/M
3300018081\|Ga0184625_10656717	Not Available	507	Open in IMG/M
3300018082\|Ga0184639_10261862	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	913	Open in IMG/M
3300018466\|Ga0190268_10926097	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	682	Open in IMG/M
3300018476\|Ga0190274_10012970	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5240	Open in IMG/M
3300018476\|Ga0190274_11147213	Not Available	859	Open in IMG/M
3300019767\|Ga0190267_10381165	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	776	Open in IMG/M
3300022694\|Ga0222623_10170535	Not Available	846	Open in IMG/M
3300022756\|Ga0222622_11012954	All Organisms → cellular organisms → Bacteria → Terrabacteria group	610	Open in IMG/M
3300026118\|Ga0207675_101020765	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	846	Open in IMG/M
3300027006\|Ga0209896_1013727	All Organisms → cellular organisms → Bacteria	888	Open in IMG/M
3300027056\|Ga0209879_1060407	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	608	Open in IMG/M
3300027561\|Ga0209887_1037101	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1091	Open in IMG/M
3300027561\|Ga0209887_1065891	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	760	Open in IMG/M
3300027750\|Ga0209461_10102573	All Organisms → cellular organisms → Bacteria → Terrabacteria group	651	Open in IMG/M
3300027750\|Ga0209461_10195490	Not Available	513	Open in IMG/M
3300027809\|Ga0209574_10145951	All Organisms → cellular organisms → Bacteria	717	Open in IMG/M
3300027809\|Ga0209574_10266039	Not Available	573	Open in IMG/M
3300028705\|Ga0307276_10164521	Not Available	570	Open in IMG/M
3300028710\|Ga0307322_10159558	All Organisms → cellular organisms → Bacteria → Terrabacteria group	603	Open in IMG/M
3300028711\|Ga0307293_10260140	Not Available	551	Open in IMG/M
3300028712\|Ga0307285_10061128	Not Available	953	Open in IMG/M
3300028715\|Ga0307313_10032426	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1480	Open in IMG/M
3300028717\|Ga0307298_10092110	Not Available	857	Open in IMG/M
3300028719\|Ga0307301_10188382	Not Available	668	Open in IMG/M
3300028719\|Ga0307301_10329824	Not Available	501	Open in IMG/M
3300028722\|Ga0307319_10001831	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6523	Open in IMG/M
3300028722\|Ga0307319_10051678	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1290	Open in IMG/M
3300028722\|Ga0307319_10114419	Not Available	867	Open in IMG/M
3300028722\|Ga0307319_10176815	Not Available	695	Open in IMG/M
3300028722\|Ga0307319_10233497	Not Available	604	Open in IMG/M
3300028744\|Ga0307318_10073757	Not Available	1141	Open in IMG/M
3300028744\|Ga0307318_10338303	Not Available	529	Open in IMG/M
3300028755\|Ga0307316_10130996	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	887	Open in IMG/M
3300028771\|Ga0307320_10038332	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1755	Open in IMG/M
3300028771\|Ga0307320_10290956	Not Available	648	Open in IMG/M
3300028784\|Ga0307282_10613297	All Organisms → cellular organisms → Bacteria → Terrabacteria group	528	Open in IMG/M
3300028787\|Ga0307323_10129257	Not Available	910	Open in IMG/M
3300028793\|Ga0307299_10127608	Not Available	955	Open in IMG/M
3300028796\|Ga0307287_10248375	All Organisms → cellular organisms → Bacteria → Terrabacteria group	674	Open in IMG/M
3300028796\|Ga0307287_10369278	Not Available	540	Open in IMG/M
3300028811\|Ga0307292_10029689	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1972	Open in IMG/M
3300028811\|Ga0307292_10134464	Not Available	991	Open in IMG/M
3300028814\|Ga0307302_10030024	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2493	Open in IMG/M
3300028814\|Ga0307302_10265855	Not Available	841	Open in IMG/M
3300028814\|Ga0307302_10306341	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	781	Open in IMG/M
3300028824\|Ga0307310_10714319	Not Available	515	Open in IMG/M
3300028876\|Ga0307286_10032610	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1722	Open in IMG/M
3300028876\|Ga0307286_10120041	All Organisms → cellular organisms → Bacteria → Terrabacteria group	931	Open in IMG/M
3300028876\|Ga0307286_10373689	Not Available	532	Open in IMG/M
3300028878\|Ga0307278_10009872	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4483	Open in IMG/M
3300028880\|Ga0307300_10125870	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	791	Open in IMG/M
3300028881\|Ga0307277_10275861	All Organisms → cellular organisms → Bacteria → Terrabacteria group	744	Open in IMG/M
3300030510\|Ga0268243_1024571	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1211	Open in IMG/M
3300030514\|Ga0268253_10102321	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	834	Open in IMG/M
3300030516\|Ga0268255_10027926	All Organisms → cellular organisms → Bacteria	1967	Open in IMG/M
3300030516\|Ga0268255_10228055	Not Available	537	Open in IMG/M
3300031548\|Ga0307408_100862980	Not Available	826	Open in IMG/M
3300031731\|Ga0307405_10039227	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	2861	Open in IMG/M
3300031731\|Ga0307405_10395268	Not Available	1080	Open in IMG/M
3300031824\|Ga0307413_10062706	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2301	Open in IMG/M
3300031824\|Ga0307413_11936108	Not Available	530	Open in IMG/M
3300031852\|Ga0307410_10029104	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3513	Open in IMG/M
3300031852\|Ga0307410_11589377	Not Available	578	Open in IMG/M
3300031911\|Ga0307412_10110752	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	1960	Open in IMG/M
3300031995\|Ga0307409_100278157	All Organisms → cellular organisms → Bacteria	1545	Open in IMG/M
3300031995\|Ga0307409_101012465	Not Available	849	Open in IMG/M
3300032002\|Ga0307416_100072580	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	2865	Open in IMG/M
3300032002\|Ga0307416_101380350	Not Available	810	Open in IMG/M
3300032002\|Ga0307416_101683255	Not Available	739	Open in IMG/M
3300032004\|Ga0307414_10826331	Not Available	846	Open in IMG/M
3300032005\|Ga0307411_10331001	All Organisms → cellular organisms → Bacteria	1234	Open in IMG/M
3300032126\|Ga0307415_100256609	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus aquaeductus	1424	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	69.64%
Host-Associated	Host-Associated	30.36%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	61.61%
Plants	Host-Associated → Plants	30.36%
Aquatic	Environmental → Aquatic	8.04%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	59.82%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.96%
Sediment	Environmental → Aquatic → Sediment	8.04%
Phylloplane	Host-Associated → Plants → Phylloplane	5.36%
Roots	Host-Associated → Plants → Roots	3.57%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.68%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	1.79%
Phyllosphere	Host-Associated → Plants → Phyllosphere	1.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	52.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	16.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	8.04%
Sand	Environmental → Terrestrial → Soil → Sand	7.14%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	5.36%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	3.57%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.68%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	1.79%
Phylloplane/Leaf Surface	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface	1.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	51.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	16.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	8.04%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	7.14%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	5.36%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	3.57%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.68%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	1.79%
Unclassified	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified	1.79%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	34.82%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	14.29%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	14.29%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	7.14%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	6.25%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	5.36%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	3.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.68%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.68%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.79%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	1.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.79%
Agave	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave	1.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.89%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.89%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300005985	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009801	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_20_30	Environmental	Open in IMG/M
3300009805	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_0_10	Environmental	Open in IMG/M
3300009807	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_0_10	Environmental	Open in IMG/M
3300009818	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300011000	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t6i015	Environmental	Open in IMG/M
3300012939	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t1i015	Environmental	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027006	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027056	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027561	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40 (SPAdes)	Environmental	Open in IMG/M
3300027750	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300027809	Agave microbial communities from Guanajuato, Mexico - Mg.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300028705	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_115	Environmental	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028712	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139	Environmental	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028880	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_181	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300030510	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG (v2)	Environmental	Open in IMG/M
3300030514	Agave microbial communities from Guanajuato, Mexico - Mg.Ma.rz (v2)	Host-Associated	Open in IMG/M
3300030516	Agave microbial communities from Guanajuato, Mexico - Or.Ma.rz (v2)	Host-Associated	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1094152231	3300000956	Soil	SVLAGVVAGLLWRSVAGSSGRVPLALSAAVGFLVSLLSLGLYGQRAFRRDLAASPVAFPVGPAGDHHR*
Ga0058697_102989662	3300005562	Agave	MIVVVNSVLAGVIGGLVWRTAAGPSGPLPLALAAAVGFLISLVSQGIYGQRAFRRDLEASTVVFPAGPAGHQDR*
Ga0068861_1009676042	3300005719	Switchgrass Rhizosphere	YFVLPATDDPWVTLAAIGVRTGGNPWWQALLTAGSMIVVVNSVLAGVVGGLLWRSVAGPSGPLPLAVAATVGFLLSLVSQAIAGQRAFRRDLEASTVAFPAGPVDDQDR*
Ga0081538_100073231	3300005981	Tabebuia Heterophylla Rhizosphere	LLTAGSMIVVVNSVLAGVFAGLLWRSVAGPSGPLPLALAAAVGFLLSLVSQGIYGQRAFRRDLDASTVAFPGGPAGSQDR*
Ga0081538_101191302	3300005981	Tabebuia Heterophylla Rhizosphere	PHMERYFVLPASDDPWVTLAAIGVRTGGNPWWQALLTAGSMIVVVNSVLAGVFAGLLWRSVAGSSGPLVLALAAAVGFLLSLVSQGIYGQRAFRRDLEASMVVFPAGPAGSRDR*
Ga0081538_101807162	3300005981	Tabebuia Heterophylla Rhizosphere	WWQALLPAGSMIVVVNSVLAGVFAGLLWRSVAGPSGPLPLALAAAVGFLLSLVSQGIYGQRAFRRDLEASTVVFPAGPAGSQDR*
Ga0081538_102633282	3300005981	Tabebuia Heterophylla Rhizosphere	GVRTGGNPWWQALLTAGSMIVVVNSVLAGVFAGLLWRSVVGPSGPLPLALAAAVGFVVSLVSQGFYGQRAFRRDLEASTVVFPAGPAGSQDR*
Ga0081539_101000404	3300005985	Tabebuia Heterophylla Rhizosphere	YFVLPASDDPWVTLAGIGVRTGGNRWWAALLTAGSMIVVVNSVLAGVVGGLVWRSLAGPSGPLPVALAAAVGFLVSLVSQGIYGQRAFRRELEASPVVFPAGPVGDQDR*
Ga0075421_1026635831	3300006845	Populus Rhizosphere	WWQALLTAGSMIVVVNSVLAGVIAGLLWRSVAGPSGPLPLALAAAVGFLLSLVSQGVYGQRAFRRNLEASPVAFPAGPAGNPPR*
Ga0075430_1000806181	3300006846	Populus Rhizosphere	VLPATDDPWVTLAAIGVQTGGNPWWQALLTAGSMIVVVNSVLAGVVAGLLWRSVAGPSGPLPLALAAAVGFLLSLVSQGVYGQRAFRRNLEASPVAFPAGPAGNQDR*
Ga0114129_131202872	3300009147	Populus Rhizosphere	GSMIVVVNSVLAGVVAGLLWRSVAGPSGPLPLALAAAVGFLLSLVSQGVYGQRAFRRELEASPVAFPAGPAGNQDR*
Ga0126307_104359211	3300009789	Serpentine Soil	APEMEPYFVLPATDDPWVTLAAIGVQTGGNPWWQALLTAGSMIVVVNSVLAGVVAGLLWRSVAGPSGPLPLALVAAVGFLLSLVSQGIYGQRAFRRNLEASPVAFPAGPAGNHPR*
Ga0126307_105656463	3300009789	Serpentine Soil	GNPWWQALLTAGSMIVVVNSVLAGVVAGLLWRSVAGPSGPLALAVAAAVGFLLSLVSQGVYGQRAFRRNLEASPVAFPAGSAGNHPR*
Ga0105056_10103851	3300009801	Groundwater Sand	EVAPEMRRYFVLPSTDDPWVSLAAVGVRTGGNPLWQALLTAGAIVVVVNSVLAGVFAGLLWRTAAGPSGPVPLALCAVAGFLLSMVSLGSYGQRTFRRDLAASPVAFPAADEGDDPAIDRAIEG*
Ga0105079_10350821	3300009805	Groundwater Sand	GAIVVVVNSVLAGVFAGLLWRTAAGPSGPVPLALCAVAGFLLSMVSLGSYGQRTFRRDLAASPVAFPAADEGDDPAIDRAIEG*
Ga0105061_10469222	3300009807	Groundwater Sand	PWWQALLTAGAIVVVVNSVLAGVFAGLLWRSAAGPSGPVPLALCAVAGFLLSMVSLGSYGQRTFRRDLAASPVAFPAADEGDDPAIDRAIES*
Ga0105072_10134792	3300009818	Groundwater Sand	DPWVTLAAIGVQTGGNPWWQALLTAGSMIVVVNSVLAGVVAGLLWRSVAGPSGPLPLALAAAVGFLLSLVSQGIYGQRAFRRDLDASTVAFPAGPAGNQDR*
Ga0126313_105347961	3300009840	Serpentine Soil	ALLTAGSMIVVVNSVLAGVVAGLLWRSVAGPSGPLPLALAAAVGFLLSLVSQGVHGQRAFRRNLEASPVAFPANPAGNHPR*
Ga0126313_107884661	3300009840	Serpentine Soil	DPWVTLAAVGVQTGGNPWWQALLTAGSMIVVVNSVLAGVVAGLLWRSVAGPSGPLPLALAAAVGFLLSLVTQGIYGLRAFRRDLEASTVAFPAGPAGSQDR*
Ga0126313_114599901	3300009840	Serpentine Soil	TLAAIGVQTGGNPWWQALLTAGSMIVVVNSVLAGVVAGLLWRSVAGPSGSLPLALAAAVGFLLSLVSQGIYAQRAFRRDLEASTVAFPAGPAGNQDR*
Ga0126305_107243571	3300010036	Serpentine Soil	VQTGGNPWWQALLTAGSMIVVVNSVLAGVVAGLLWRSVAGPSGPLALAVAAAVGFLLSLVSQGVYGQRAFRRNLEASPVAFPAGSAGNHPR*
Ga0126315_101671362	3300010038	Serpentine Soil	PWWQALLTAGSMIVVVNSVLAGVVGGLLWRSVAGPSGPLPLALAAAVGFLLSLVSQGIYGQRAFRRDLEASTVAFPAGPAGDQDR*
Ga0126309_107366122	3300010039	Serpentine Soil	VVNSVLAGVVGGLLWRSVAGPSGPLPLALAAAVGFLLSLVSQGIYGQRAFRRDLEASTVAFPAGPAGDQDR*
Ga0126312_103523101	3300010041	Serpentine Soil	DDPWVTLAAIGVRTGGNPWWQALLTAGSMIVVVNSVLAGVVAGLLWRSVAGPSGPLPLALAAAVGFLVSLVSQGVYGQRAFRRDLDASTVAFPAGPAGNQDR*
Ga0126314_108548601	3300010042	Serpentine Soil	MIVVVNSVLAGVVAGLLWRSVAGPSGPLPLALAAAVGFLVSLVGQGVYRERAVRRNLEASPVAFPAGPAGNHPR*
Ga0126314_111013581	3300010042	Serpentine Soil	TDDPWVTLAAIGVRTGGNPWWQALLTAGSMIVVVNSVLAGVVAGLLWRSLAGPSGPLPLALAAAVGFLLSLVSQGVYGQRAFRRNLEASPVAFPAGPAGNHPR*
Ga0126310_111871152	3300010044	Serpentine Soil	AGSMIVVVNSVLAGVVAGLLWRSVAGPSGSLPLAAAAAVGFLVSLVSQGVYGQRAFRRDLEASPVAFPAGPAGNHPR*
Ga0126310_113434081	3300010044	Serpentine Soil	PYFVLPATDDPWVTLAAIGVRTGGNPWWQALLTAGSMIVVVNSVLAGVFAGLLWRSVAGPSGPLPLALAAAVGFLLSLVSQGIYGQRAFRRDLEASTVAFPAAKHDR*
Ga0126311_101227591	3300010045	Serpentine Soil	IGVRTGGNPWWQALLTAGSMIVVVNSVLAGVVAGLLWRSVAGSSGPLPLALAAAVGFLVSLVSQGVYGQRAFRRDLEASPVAFPAGPAGNHPR*
Ga0126306_110364581	3300010166	Serpentine Soil	MEPYFVLPATDDPWVTLAAIGVQTGGNPWWQALLTAGSMIVVVNSVLAGVVAGLLWRSVAGPSGPLPLALAAAVGFLLSLVSQAIYGQRAFRRDLDASTVAFPPGPAGNQDR*
Ga0126306_117593061	3300010166	Serpentine Soil	MIVVVNSVLAGVVGGLLWRSVAGPSGPLPLALAAAVGFLVSLVSQGIYGQRAFRRDLEASPVAFPAGPAGDQDR*
Ga0138513_1000734951	3300011000	Soil	LAGVFAGLLWRSVAGPSGPVPLAVCAVAGFLLSMVSLGGYGQRTFRRDLAASPVAFPAAGEGDDPATDRAIES*
Ga0162650_1000472932	3300012939	Soil	IGVRTGGNPWLQALLTAGSMIVVVNSVLAGVVAGLLWRSVVGPSGPLPLALAAAVGFLVSLVSQGVYGQRAFRRELEASTVAFPAAPPGKHQR*
Ga0182000_103999301	3300014487	Soil	GNPWWQALLTAGSMIVVVNSVLAGVVAGLLWRSVAGPSGPLPLALAAAVGFVVSLVSQGVYGQRAFRRNLEASPVAFPAGPAGNHPR*
Ga0182000_106161901	3300014487	Soil	IGVRTGGNPWWQALLTAGSMIVVVNSVLAGVVAGLLWRSVAGPSGPLPLALAAAVGFLLSLVSQGIYGQRAFQRDLDASAVAFPAGPAGDQDR*
Ga0184608_103151901	3300018028	Groundwater Sediment	MVVVVNSVLAGVVAGLLWRSVAGPSGLLPLALSAVAGFVLSLMLLGGYGQRTFRRDMEASPVAFPARPAGVHPPADRPSEG
Ga0184621_100980361	3300018054	Groundwater Sediment	ERYFVLPATDDPWVTLAAIGVQTGGNPWWQALLTAGSMIVVVNSVLAGVVAGLLWRSFAGPSGPLPLALAAAVGFLLSLVSQGIYGQRAFRRELDASTVAFPAGPAGNQDR
Ga0184632_101557531	3300018075	Groundwater Sediment	VLPATDDPWVTLAAIGVQTGGNPWWQALLTAGSMIVVVNSVLAGVVAGLLWRSVVGPSGPLPLALAAAVGFLLSLVSQGIYGQRAFRRNLEASTVAFPAGPAGNQDR
Ga0184612_101141122	3300018078	Groundwater Sediment	LTAGSMIVVVNSVLAGVVAGLLWRSVAGPSGPLPLALAAAVGFLVSLVSQGVYGQRAFRRDLDASTVAFPAGPAGNQDR
Ga0184625_103477632	3300018081	Groundwater Sediment	GAIVVVVNSVLAGVFAGLLWRSVAGPSGPVPLAVCAVAGFLLSMVSLGGYGQRTFRRDLAASPVAFPAAGEEDNPATDRAIES
Ga0184625_106567171	3300018081	Groundwater Sediment	VTLAAIGVQTGGNPWWQALLTAGSMIVVVNSVLAGVVAGLLWRSFAGPSGPLPLALAAAVGFLLSLVSQSISGQRAFRRDLEASTVAFPAGPAGDQDR
Ga0184639_102618622	3300018082	Groundwater Sediment	MEPYFVLPATDDPWVTLAAIGVRTGGNPWWQALLTAGSMIVVVNSVLAGVVAGLLWRSVAGPSGSLPLALAAAVGFLLSLVSQGIYGQRAFRRDLDASTVAFPPGPAGNQDR
Ga0190268_109260972	3300018466	Soil	VEEGNPWWQALLTAGSMIVVVNSVLAGVVAGLLWRSVAGPSGPLALALAAAVGFLLSLVSQGIYGQRAFRRDLDASTVAFPAGPAGSRDR
Ga0190274_100129701	3300018476	Soil	ATDDPWVTLAAIGVQTGGNPWWQALLTAGSMIVVVNSVLAGVVAGLLWRSVAGPSGPLPLALAAAVGFLLSLVSQGIYGQRAFRRDLDASTVAFPAGPAGNQDR
Ga0190274_111472132	3300018476	Soil	ATDDPWVTLAAIGVQTGGNPWWQALLTAGSMIVVVNSVLAGVVAGLLWRSVAGPSGPLPLALAAAVGFLLSLVSQAIYGQRAFRRDLEASTVVFPAGPAGAQDR
Ga0190267_103811651	3300019767	Soil	HYFLELAPEMERYFVLPATDDPWVTLAAIGVQTGGNPWWQALLTAGSMIVVVNSVLAGVVGGLLWRSVAGPSGPLPLALAAAVGFLLSLVSQSISGQRAFRRDLDASTVAFPAGPAGSRD
Ga0222623_101705352	3300022694	Groundwater Sediment	PWVTLAAIGVQTGGNPWWQALLTAGSMIVVVNSVLAGVVAGLLWRSVAGPSGPLPLALAAAVGFLLSLVSQGIYGQRAFRRDLDASTVAFPAGPAGNQDR
Ga0222622_110129542	3300022756	Groundwater Sediment	TLAAIGVQTGGNPWWQALLTAGSMIVVVNSVLAGVVAGLLWRSVAGPSGPLPLALAAAVGFLLSLVSQGVYGQRAFRRNLEASPVAFPAGPAGDQDR
Ga0207675_1010207651	3300026118	Switchgrass Rhizosphere	HYFLELAPEMERYFVLPASDDPWVTLAAIGVRTGGNPWWQALLTAGSMIVVVNSVLAGVVGGLLWRSVAGPSGPLPLAVAATVGFLLSLVSQAIAGQRAFRRDLEASTVAFPAGPVDDQD
Ga0209896_10137272	3300027006	Groundwater Sand	LEVAPEMGRYFVLPSTDDPWVSLTAVGIRTGGNPWWQALLTAGAIVVVVNSVLAGVFAGLLWRTAAGPSGPVPLALCAVAGFLLSMVSLGSYGQRTFRRDLAASPVAFPAADEGDDPAIDRAIEG
Ga0209879_10604072	3300027056	Groundwater Sand	MEPYFVLPATDDPWVTLAAIGVQTGGNPWWQALLTAGSMIVVVNSVLAGVVAGLLWRSVAGPSGPLPLALAAAVGFLVSLVSQGVYGQRAFRRDLDASTVAFPAGPAGNQDR
Ga0209887_10371011	3300027561	Groundwater Sand	PWWQALLTAGSMIVVVNSVLAGVVGGLLWRSVVGPSGPLPLALAAAVGFLLSLVSQGIYGQRAFRRDLEASTVAFPAGPPGNQDR
Ga0209887_10658911	3300027561	Groundwater Sand	ATDDPWVTLAAIGVQTGGNPWWQALLTAGSMIVVVNSVLAGVVAGLLWRSVAGPSGPLPLAAAAAVGFLVSLVSQGVYGQRAFRRDLDASTVAFPAGPAGNQDR
Ga0209461_101025731	3300027750	Agave	PWWQALLTAGSMIVVVNSVLAGVVAGLLWRSVAGPSGPLPLALAAAGGFLLSLVSQSIYGQRAFRRDLEASTVAFPAAKHDR
Ga0209461_101954902	3300027750	Agave	MIVVVNSVLAGVVGGLVWRSLVGPSGRLPLALAAAVGFLGSLVSQGISGQRAFRRDLEASTVVFPAGPAGAQDR
Ga0209574_101459511	3300027809	Agave	WVTLAAIGVRTGGNPWWQALLTAGSMIVVVNSVLAGVVAGLLWRSVAGPSEPLPLALAAAVGFLLSLVSQGIYGQRAFRRELEASPVVFPAGPAGSRDR
Ga0209574_102660391	3300027809	Agave	AGAVTAGSMIVVVNSVLAGMFTALLWRSVAGPSGPLPLALAAVVGFLLSLVSQGIYGQRAFRRDLDASTVAFPAGPAGNQDR
Ga0307276_101645211	3300028705	Soil	APELEPYFVLPASDDPWVTLAAIGVQTGGNPWWQALLTAGSMIVVVNSVLAGVVGGLLWRSVAGPSGPLPLALAAAVGFLVSLVSQGVYGLRAFRRDLDASPVAFPAGPAGDQDR
Ga0307322_101595582	3300028710	Soil	VLAGVVGGLLWRSVAGPSGPLPLALAAAVGFLLSLVSQGVYGLRAFRRDLDASTVAFPAGPAGNQDR
Ga0307293_102601401	3300028711	Soil	TGGNPWWQALLTAGSMIVVVNSVLAGVVGGLLWRSVARPSGPLPLALAAAVGFLVSLVSQGVYGLRAFRRDLDASPVAFPAGPAGDQGR
Ga0307285_100611281	3300028712	Soil	MERYFVLPATDDPWVTLAAIGVQTGGNPWWQALLTAGSMIVVVNSVLAGVVAGLLWRSVAGPSGPLPLALAAAVGFLLSLVSQGIYGQRAFRRDLDASTVAFPAGPAGNQDR
Ga0307313_100324262	3300028715	Soil	IRHYFLELAPEMERYFVLPATDDPWVTLAAIGVQTGGNPWWQALLTAGSMIVVVNSVLAGVVAGLLWRSFAGPSGPLPLALAAAVGFLLSLVSQGIYGQRAFRRELDASTVAFPAGPAGNQDR
Ga0307298_100921101	3300028717	Soil	DPWVTLAAIGVQTGGNPWWQALLTAGSMIVVVNSVLAGVVAGLLWRSVAGPSGPLPLALAAAVGFLLSLVSQGVYGQRAFRRNLEASPVAFPAGPAGDQDR
Ga0307301_101883821	3300028719	Soil	VQTGGNPWWQALLTAGSMIVVVNSVLAGVVAGLLWRSFAGPSGPLPLALAAAVGFLLSLVSQGIYGQRAFRRELDASTVAFPAGPAGNQDR
Ga0307301_103298241	3300028719	Soil	LTAGSMIVVVNSVLAGVVAGLLWRSVAGPSGPLPLALAAAVGFLLSLVSQGIYGQRAFRRNLEASPVAFPAGSAGNHPR
Ga0307319_100018311	3300028722	Soil	YFVLPATDDPWVTLAAIGVQTGGNPWWQALLTAGSMIVVVNSVLAGVVAGLLWRSVAGPSGPLPLALAAAVGFLLSLVSQGIYGQRAFRRDLEASPVAFPAGPAGNQDR
Ga0307319_100516782	3300028722	Soil	LAAIGVRTGGNPWWQALLTAGSMIVVVNSVLAGVVAGLLWRSVAGPSGPLPLALAAAVGFLVSLVSQSISGQRAFRRDLEASTVVFPAGPAGSRDR
Ga0307319_101144191	3300028722	Soil	TAGSMIVVVNSVLAGVVGGLLWRSVAGPSGPLPLALAAAVGFLLSLVSQGIYGQRAFRRDLDASTVAFPAGPAGNQDR
Ga0307319_101768152	3300028722	Soil	VVNSVLAGVVAGLLWRSVAGPSGPLPLALAAAVGFLLSLVSQSISGQRAFRRDLEASTVAFPAGPAGDQDR
Ga0307319_102334971	3300028722	Soil	DDPWVTLAAIGVQTGGNPWWQALLTAGSMIVVVNSVLAGVVAGLLWRSVAGPSGPLPLALAAAVGFLLSLVSQGVYGQRAFRRNLEASPVAFPAGPAGNHPR
Ga0307318_100737571	3300028744	Soil	TAGSMIVVVNSVLAGVVAGLLWRSVAGPSGPLPLALAAAVGFLLSLVSQGVYGQRAFRRNLEASPVAFPAGPAGNHPR
Ga0307318_103383031	3300028744	Soil	VNSVLAGVVAGLLWRSVAGPSGSLPLALAAAVGFLLSLVSQGIYGQRAFRRDLDASTVAFPAGPAGNQDR
Ga0307316_101309962	3300028755	Soil	LAGVVAGLLWRSVAGPSGPLPLALAAAVGFLVSLVSQSISGQRAFRRDLEASTVAFPAGPAGDQDR
Ga0307320_100383321	3300028771	Soil	HYFLELAPEMEPYFVLPATDDPWVTLAAIGVQTGGNPWWQALLTAGSMIVVVNSVLAGVVAGLLWRSVAGPSGPLPLALAAAVGFLLSLVSQGISGQRAFRRDLEASPVAFPAGPAGNQD
Ga0307320_102909562	3300028771	Soil	TGGNRWWQALLTAGSMIVVVNSVLAGVVAGLLWRSLAGPSGPLPLALAAAVGFLLSLVSQGFYAQRAFRRNLEASPVAFPAGPAGNDHR
Ga0307282_106132971	3300028784	Soil	GSMIVVVNSVLAGVVAGLLWRSVAGPSGPLPLALAAAVGFLLSLVSQGVYGQRAFRRNLEASPVAFPAGPAGDQDR
Ga0307323_101292572	3300028787	Soil	AGSMIVVVNSVLAGVVAGLLWRSFAGPSGPLPLALAAAVGFLLSLVSQGVYGLRAFRRDLDASTVAFPAGPAGNQDR
Ga0307299_101276081	3300028793	Soil	VQTGGNPWWQALLTAGSMIVVVNSVLAGVVAGLLWRSFAGPSGPLPLALAAAVGFLLSLVSQGIYGQRAFRRELEASPVAFPAGPAGNQDR
Ga0307287_102483751	3300028796	Soil	SMIVVVNSVLAGVVGGLLWRSVAGPSGSLPLALAAAVGFLLSLVSQGVYGQRAFRRNLEASPVAFPAGPAGDQDR
Ga0307287_103692781	3300028796	Soil	LAATGVQTGGNPWWAALLTAGSMIVVVNSVLAGVVGGLLWRSVAGPSGPLPLALAAAVGFLVSLVSQSVYGQRAFRRDLEASSVVFPAGPAGDQDR
Ga0307292_100296895	3300028811	Soil	QTGGNPWWQALLTAGSMIVVVNSVLAGVVAGLLWRSVAGPSGPLPLALAAAVGFLLSLVSQGIYGQRAFRRDLDASTVAFPAGPAGNQDR
Ga0307292_101344641	3300028811	Soil	ATDDPWVTLAAIGVQTGGNPWWQALLTAGSMIVVVNSVLAGVFAGLLWRSFAGPSGPLPLALAAAVGFLLSLVSQGIYGQRAFRRELDASTVAFPAGPAGNQDR
Ga0307302_100300242	3300028814	Soil	VLPATDDPWVTLAAIGVQTGGNPWWQALLTAGSMIVVVNSVLAGVVAGLLWRSVAGPSGPLPLALAAAVGFLVSLVSQGVYGQRAFRRDLDASTVAFPAGPAGNQDR
Ga0307302_102658552	3300028814	Soil	NSVLAGVVAGLLRRSVAGPSGSLPLALAAAVGFLLSLVSQGISGQRAFRRNLDASPVAFPAGPAGNHPR
Ga0307302_103063411	3300028814	Soil	TDDPWVTLAAIGVQTGGNPWWQALLTAGSMIVVVNSVLAGVVGGLLWRSVAGPSGSLPLALAAAVGFLLSLVSQGVYGQRAFRRDLEASTVAFPAGPAGSRDR
Ga0307310_107143191	3300028824	Soil	GNPWWQALLTAGSMIVVVNSVLAGVVGGLLWRSVAGPSGPLPLALAAAVGFLVSLVSQGVYGLRAFRRDLEASTVAFPAGPAGNQDR
Ga0307286_100326103	3300028876	Soil	GNPWWQALLTAGSMIVVVNSVLAGVVAGLLWRSVAGPSGPLPLALAAAVGFLLSLVSQGIYGQRAFRRDLDASTVAFPAGPAGNQDR
Ga0307286_101200411	3300028876	Soil	AGSMIVVVNSVLAGVVAGLLWRSVAGPSGPLPLALAAAVGFLLSLVSQGIYGQRAFRRNLEASPVAFPAGSAGNHPR
Ga0307286_103736891	3300028876	Soil	RTGGNPWWAALLTAGSMIVVVNSVLAGVVGGLLWRSVAGPSGPLPLALAAAVGFLLSLVSQSISGQRAFRRDLEASTVAFPAGPAGDQDR
Ga0307278_100098721	3300028878	Soil	LAPEMEPYFVLPATDDPWVTLAAIGVQTGGNPWWQALLTAGSMIVVVNSVLAGVVGGLLWRSVVGPSGPLPLALAAAVGFLLSLVSQGIYGQRAFRRDLDASTVAFPAGPAGNQDR
Ga0307300_101258701	3300028880	Soil	ELAPEMERYFVLPASDDPWVTLAAIGVRTGGNPWWQALLTAGSMIVVVNSVLAGVVGGLLWRSVVGPSGPLPLALAAAVGFLLSLVSQGIYGQRAFRRDLEASPVAFPAGPAGNQDR
Ga0307277_102758612	3300028881	Soil	AAIGVQTGGNPWWQALLTAGSMIVVVNSVLAGVVAGLLWRSVAGPSGPLPLALAAAVGFLLSLVSQGVYGQRAFRRNLEASPVAFPAGPAGDQDR
Ga0268243_10245711	3300030510	Soil	ATDDPWVTLAAIGVQTGGNPWWQALLTAGSMIVVVNSVLAGVVAGLLWRSVAGPSGPLPLALAAAVGFLVSLVSQGVYGQRAFRRDLEASTVAFPAGPAGNQDR
Ga0268253_101023211	3300030514	Agave	PATDDPWVTLAAIGVRTGGNPWWQALLTAGSMIVVVNSVLAGVVAGLLWRSVAGPSGPLPLGLAAAVGFLLSLVSQGIYGQRAFRRELEASPVVFPAGPAGSRDR
Ga0268255_100279263	3300030516	Agave	LLTAGSMIVVVNSVLAGVVEGLVWRSLAGPSGPLPLALAAAVGFLVSLVSQGVYGQRAFRRDLEASTVAFPAGPAAKQDR
Ga0268255_102280552	3300030516	Agave	EMEPYFVLPASDDPWVTLAAIGVQTGGNPWWQALLTAGSMIVVVNSVLAGVVGGLLWRSVAGPSGPLPLALAAAVGFLLSLVSQGIYGQRAFRRDLEASTVVFPAGPAGDQDR
Ga0307408_1008629801	3300031548	Rhizosphere	FVLPATDDPWVTLAAIGVQTGGNPWWQALLTAGSMIVVVNSVLAGVVAGLLWRSVAGPSGPLPLALAAAVGFLVSLVSQGVYGQRAFRRDLDASTVAFPAGPAGNQDR
Ga0307405_100392274	3300031731	Rhizosphere	APEMGPYFVLPATDDPWVTLAAIGVQTGGNPWWQALLTAGSMIVVVNSVLAGVVAGLLWRSVAGPSGPLPLALAAAVGFLLSLVSQGVYGQRAFRRNLEASPVAFPAGPAGNHPR
Ga0307405_103952681	3300031731	Rhizosphere	EMERYFVLPATDDPWVTLAAIGVQTGGNPWWQALLTAGSMIVVVNSVLAGVVAGLLWRSVAGPSGPLPLALAAAVGFLVSLVSQGVYGQRAFRRDLDASTVAFPAGPAGNQDR
Ga0307413_100627063	3300031824	Rhizosphere	MIVVVNSVLAGVVAGLLWRSVAGPSGPLPLALAAAVGFLVSLVSQGVYGQRAFRRDLDASTVAFPAGPAGNQDR
Ga0307413_119361081	3300031824	Rhizosphere	TDDPWVTLAAVGVQTGGNPWWQALLTAGSMIVVVNSVLAGVVAGLLWRSVAGPSGPLPLALAAAVGFLLSLVSQGVYGQRAFRRNLEASPVAFPAGPAGNHPR
Ga0307410_100291041	3300031852	Rhizosphere	GSMIVVVNSVLAGVVAGLLWRSVAGPSGPLPLALVAAVGFLLSLVSQGIYGQRAFRRNLEASPVAFPAGPAGNHPR
Ga0307410_115893771	3300031852	Rhizosphere	LLTAGSMIVVVNSVLAGVVAGLLWRSVAGPSGPLPLALAAAVGFLLSLVSQGIYGQRAFRRDLEASTVAFPAGPAGNQDR
Ga0307412_101107521	3300031911	Rhizosphere	VNSVLAGVVAGLLWRSVAGPSGPLPLALVAAVGFLLSLVSQGIYGQRAFRRNLEASPVAFPAGPAGNHPR
Ga0307409_1002781573	3300031995	Rhizosphere	VGHPGHGRHPERGNPWWQALLTAGAIIVVVNSVLAGDFAGLLWRSVAGSSGPVPLALSAAVGFLVSLLSLGLYGQRAFRRDLEAS
Ga0307409_1010124652	3300031995	Rhizosphere	FVLPATDDPWVTLAAIGVHTGGNPWWQALLTAGSMIVVVNSVLAGVVAGLLWRSVAGPSGPLPLALAAAVGFLLSLVSQGVYGQRAFRRNLEASPVAFPAGPAGNHPR
Ga0307416_1000725804	3300032002	Rhizosphere	QTGGNPWWQALLTAGSMIVVVNSVLAGVVAGLLWRSVAGPSGPLPLALVAAVGFLLSLVSQGIYGQRAFRRNLEASPVAFPAGPAGNHPR
Ga0307416_1013803501	3300032002	Rhizosphere	FLELAPEMEPYFVLPATDDPWVTLAAIGVQTGGNPWWQALLTAGSMIVVVNSVLAGVVAGLLWRSVAGPSGPLPLALAAAVGFLLSLVSQAIYGQRAFRRDLDASTVAFPAGPAGNQDR
Ga0307416_1016832551	3300032002	Rhizosphere	TDDPWVTLAAIGVQTGGNPWWQALLTAGSMIVVINSVLAGVVAGLLWRSVAGPSGPPLPLALAAAVGFLLSLVSQGIYGLRAFRRDLEASTVAFPAGPAGNRDR
Ga0307414_108263311	3300032004	Rhizosphere	TDDPWVTLAAIGVQTGGNPWWQALLTAGSMIVVVNSVLAGVVAGLLWRSVAGPSGPLPLALVAAVGFLLSLVSQGIYGQRAFRRNLEASPVAFPAGPAGNHPR
Ga0307411_103310012	3300032005	Rhizosphere	LELAPEMERYLVLPATDDPWATLAAVGIRSGGNPWWQALLTAGAIIVVVNSVLAGVFAGLLWRSVAGSSGPVPLALSAAVGFLVSLLSLGLYGQRAFRRDLEASTVAFPAGNHDRTWPAGSGRDQESDPEG
Ga0307415_1002566093	3300032126	Rhizosphere	TAGSIIVVVNSVLAGVVGGLLWRSLAGPSGPLPLALAAAVGFLLSLVSQGIYGQRAFRRDLDASTVVFPAGPAGDQDR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F083852

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences