Metagenome / Metatranscriptome Family F083828

Basic Information
Family ID	F083828
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	61 residues
Representative Sequence	MESPLIIPLAVFAMVVLIVAITKMAKIRDREIEVHQRLHLEQLEHQRKMKELELELERVKQGK
Number of Associated Samples	71
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	83.64 %
% of genes near scaffold ends (potentially truncated)	17.86 %
% of genes from short scaffolds (< 2000 bps)	58.04 %
Associated GOLD sequencing projects	68
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (79.464 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment (26.786 % of family members)
Environment Ontology (ENVO)	Unclassified (36.607 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (44.643 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78. 1Ga0031655_100649762 2Ga0068919_13295561 3Ga0070741_100334536 4Ga0070733_104124533 5Ga0073934_1000349626 6Ga0073934_1000922310 7Ga0105152_100531913 8Ga0105152_101791582 9Ga0116104_10384843 10Ga0116223_104573752 11Ga0136847_101350913 12Ga0136847_118646392 13Ga0136847_124415844 14Ga0136847_128920981 15Ga0138572_10681922 16Ga0138560_12125721 17Ga0153915_126428191 18Ga0153915_131589031 19Ga0153916_101138325 20Ga0153916_113913513 21Ga0153916_118287741 22Ga0153916_123716671 23Ga0181533_12479172 24Ga0181517_100029987 25Ga0181538_103803693 26Ga0182016_105377952 27Ga0181525_102788721 28Ga0187803_101190051 29Ga0187803_104902082 30Ga0187850_100149065 31Ga0187850_100447726 32Ga0187879_102359763 33Ga0187781_100571454 34Ga0187780_104867463 35Ga0187782_100260788 36Ga0187782_105708153 37Ga0187878_10038795 38Ga0187886_10616141 39Ga0187881_102617791 40Ga0187885_102452772 41Ga0187867_100804373 42Ga0187871_102009793 43Ga0187784_113020982 44Ga0187772_109803752 45Ga0187769_100891203 46Ga0187769_113329811 47Ga0187771_100314518 48Ga0187771_100865012 49Ga0187771_112681151 50Ga0187771_114098611 51Ga0187771_114817641 52Ga0187771_115245932 53Ga0187771_115612172 54Ga0187774_109533211 55Ga0187796_12951191 56Ga0187794_12390351 57Ga0187794_14877302 58Ga0187798_15480051 59Ga0209172_100070556 60Ga0209172_100519725 61Ga0209640_100992464 62Ga0209182_100038217 63Ga0209182_100784033 64Ga0209580_100101973 65Ga0209777_100037238 66Ga0209777_101406762 67Ga0272448_11965614 68Ga0307380_100939171 69Ga0315309_10061827 70Ga0315291_1000154719 71Ga0315291_100197294 72Ga0315291_103621871 73Ga0315288_100596846 74Ga0315288_106181263 75Ga0315280_1000009731 76Ga0315280_1000420919 77Ga0315280_100316807 78Ga0315280_100950873 79Ga0315285_103278941 80Ga0315294_105414684 81Ga0326597_102053592 82Ga0315274_106062261 83Ga0315289_106766264 84Ga0315282_1000292411 85Ga0315282_100042918 86Ga0315282_100273467 87Ga0315282_102802051 88Ga0315282_105509331 89Ga0315279_100711074 90Ga0315279_105004891 91Ga0315277_100452095 92Ga0315295_106156493 93Ga0315281_100472505 94Ga0315268_100889346 95Ga0315268_102539434 96Ga0315268_113379571 97Ga0315286_100267914 98Ga0315275_101128865 99Ga0335085_100202908 100Ga0335085_106596762 101Ga0335078_116582271 102Ga0335072_111446422 103Ga0334722_100358676 104Ga0326728_101642334 105Ga0316624_100158227 106Ga0316624_122434901 107Ga0316628_10000761311 108Ga0316628_1000943844 109Ga0316628_1003234764 110Ga0314861_0155880_684_872 111Ga0314861_0500830_108_299 112Ga0373901_103088_148_339
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78. 1Ga0031655_100649762 2Ga0068919_13295561 3Ga0070741_100334536 4Ga0070733_104124533 5Ga0073934_1000349626 6Ga0073934_1000922310 7Ga0105152_100531913 8Ga0116104_10384843 9Ga0136847_101350913 10Ga0136847_128920981 11Ga0138572_10681922 12Ga0153915_126428191 13Ga0153915_131589031 14Ga0153916_123716671 15Ga0181517_100029987 16Ga0181538_103803693 17Ga0182016_105377952 18Ga0181525_102788721 19Ga0187850_100447726 20Ga0187780_104867463 21Ga0187784_113020982 22Ga0187769_113329811 23Ga0187771_100314518 24Ga0187771_112681151 25Ga0187771_114098611 26Ga0187771_114817641 27Ga0187771_115245932 28Ga0187771_115612172 29Ga0187796_12951191 30Ga0187798_15480051 31Ga0307380_100939171 32Ga0315280_1000009731 33Ga0315280_1000420919 34Ga0315294_105414684 35Ga0315282_102802051 36Ga0335078_116582271 37Ga0326728_101642334
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62. 1Ga0315288_100596846 2Ga0068919_13295561 3Ga0070741_100334536 4Ga0073934_1000922310 5Ga0105152_100531913 6Ga0116104_10384843 7Ga0116223_104573752 8Ga0136847_101350913 9Ga0136847_118646392 10Ga0136847_128920981 11Ga0153915_131589031 12Ga0153916_113913513 13Ga0153916_118287741 14Ga0181517_100029987 15Ga0181538_103803693 16Ga0182016_105377952 17Ga0181525_102788721 18Ga0187803_101190051 19Ga0187803_104902082 20Ga0187850_100447726 21Ga0187879_102359763 22Ga0187780_104867463 23Ga0187782_100260788 24Ga0187782_105708153 25Ga0187881_102617791 26Ga0187885_102452772 27Ga0187772_109803752 28Ga0187769_100891203 29Ga0187769_113329811 30Ga0187771_100314518 31Ga0187771_112681151 32Ga0187771_115245932 33Ga0187771_115612172 34Ga0187798_15480051 35Ga0209172_100070556 36Ga0209182_100038217 37Ga0209580_100101973 38Ga0272448_11965614 39Ga0307380_100939171 40Ga0315280_1000009731 41Ga0315280_1000420919 42Ga0315280_100950873 43Ga0326597_102053592 44Ga0315274_106062261 45Ga0315282_100273467 46Ga0315282_102802051 47Ga0315282_105509331 48Ga0315281_100472505 49Ga0315268_100889346 50Ga0315268_102539434 51Ga0335085_100202908 52Ga0335085_106596762 53Ga0335078_116582271 54Ga0335072_111446422 55Ga0334722_100358676 56Ga0326728_101642334 57Ga0316628_10000761311 58Ga0314861_0500830_108_299 59Ga0373901_103088_148_339
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 62.64% β-sheet: 0.00% Coil/Unstructured: 37.36%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
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Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF13349	DUF4097	11.61
PF13490	zf-HC2	8.93
PF00275	EPSP_synthase	4.46
PF00643	zf-B_box	2.68
PF08281	Sigma70_r4_2	1.79
PF13671	AAA_33	0.89
PF00923	TAL_FSA	0.89
PF16757	Fucosidase_C	0.89
PF02021	UPF0102	0.89
PF02621	VitK2_biosynth	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG0176	Transaldolase/fructose-6-phosphate aldolase	Carbohydrate transport and metabolism [G]	0.89
COG0792	Predicted endonuclease distantly related to archaeal Holliday junction resolvase, YraN/UPF0102 family	Replication, recombination and repair [L]	0.89
COG1427	Chorismate dehydratase (menaquinone biosynthesis, futalosine pathway)	Coenzyme transport and metabolism [H]	0.89

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	79.46 %
Unclassified	root	N/A	20.54 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	79.46 %
Unclassified	root	N/A	20.54 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	79.46 %
Unclassified	root	N/A	20.54 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	66.96 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.89 %
Unclassified	root	N/A	20.54 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	5.36 %
Holophagae	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae	0.89 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.89 %
Unclassified	root	N/A	20.54 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	58.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	58.93 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	3.57 %
Holophagales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → Holophagales	0.89 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.89 %
Unclassified	root	N/A	20.54 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	58.93 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3.57 %
Holophagaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → Holophagales → Holophagaceae	0.89 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.89 %
Unclassified	root	N/A	20.54 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	58.93 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3.57 %
Geothrix	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → Holophagales → Holophagaceae → Geothrix	0.89 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.89 %
Unclassified	root	N/A	20.54 %

Scaffold	Taxonomy	Length	IMG/M Link
(restricted) 3300031604\|Ga0315309_1006182	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6654	Open in IMG/M
3300003852\|Ga0031655_10064976	All Organisms → cellular organisms → Bacteria → Proteobacteria	1546	Open in IMG/M
3300004473\|Ga0068919_1329556	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	645	Open in IMG/M
3300005529\|Ga0070741_10033453	All Organisms → cellular organisms → Bacteria	7016	Open in IMG/M
3300005541\|Ga0070733_10412453	Not Available	899	Open in IMG/M
3300006865\|Ga0073934_10003496	All Organisms → cellular organisms → Bacteria	28760	Open in IMG/M
3300006865\|Ga0073934_10009223	All Organisms → cellular organisms → Bacteria	12738	Open in IMG/M
3300009039\|Ga0105152_10053191	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1620	Open in IMG/M
3300009039\|Ga0105152_10179158	Not Available	871	Open in IMG/M
3300009614\|Ga0116104_1038484	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1104	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Engineered	Engineered	0.89%
Environmental	Environmental	99.11%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	60.71%
Bioremediation	Engineered → Bioremediation	0.89%
Terrestrial	Environmental → Terrestrial	38.39%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	56.25%
Metal	Engineered → Bioremediation → Metal	0.89%
Peat	Environmental → Terrestrial → Peat	0.89%
Soil	Environmental → Terrestrial → Soil	37.50%
Thermal Springs	Environmental → Aquatic → Thermal Springs	4.46%

Habitat	Taxonomy	Distribution
Clay	Environmental → Terrestrial → Soil → Clay	0.89%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.89%
Lake	Environmental → Aquatic → Freshwater → Lake	33.93%
Lentic	Environmental → Aquatic → Freshwater → Lentic	2.68%
Loam	Environmental → Terrestrial → Soil → Loam	0.89%
Sediment	Environmental → Aquatic → Thermal Springs → Sediment	3.57%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	7.14%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.89%
Unclassified	Engineered → Bioremediation → Metal → Unclassified	0.89%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	28.57%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	19.64%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	11.61%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.89%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	33.93%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	2.68%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.79%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment	0.89%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	27.68%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	7.14%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	6.25%
Unclassified	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified	3.57%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.89%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	0.89%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.89%
Unclassified	Engineered → Bioremediation → Metal → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	3.57%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.89%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	2.68%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	3.57%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.79%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	5.36%
Hot Spring Sediment	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment	3.57%
Lake Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Lake Sediment	3.57%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.89%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	8.04%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	5.36%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.89%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.57%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	26.79%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment	0.89%
Sediment Slurry	Engineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry	0.89%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	8.04%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	0.89%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.68%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	14.29%

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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003852	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB	Environmental	Open in IMG/M
3300004473	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300006865	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG	Environmental	Open in IMG/M
3300009039	Lake sediment microbial communities from Lake Baikal, Russia to study Microbial Dark Matter (Phase II) - Lake Baikal sediment 0-5 cm	Environmental	Open in IMG/M
3300009614	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_150	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010391	Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406	Environmental	Open in IMG/M
3300011077	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 57 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M

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Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0031655_100649762	3300003852	Freshwater Lake Sediment	MDTPFIIPLGVFVMVVLIVAITQLVKVRDMEMDVHQRLHQEELEHQRKMRELDLELERLKDSDK*
Ga0068919_13295561	3300004473	Peatlands Soil	PLAVFAMVVLIVAMAELTKIRNLEVDVHQKLHLEEMEHQRKMRELELELERIKQGT*
Ga0070741_100334536	3300005529	Surface Soil	MFPGTLIPLAVFGMVVLIVAIVHMTKLRDKEIEIQHRLHLEELEHRRRMQELEMRAQSLKGPQ*
Ga0070733_104124533	3300005541	Surface Soil	MDNGLLIPLAVFAMVVLIVGITGMAKLHDKEMDVQQSLHAELLEHQRKMKELDQELERLKSGL*
Ga0073934_1000349626	3300006865	Hot Spring Sediment	MFSPTMVPLALFLMVVVIVALTQVVKLRDKEIAVQRQLHAATLEHQRKMEELQAELERVKKGGSAISP*
Ga0073934_1000922310	3300006865	Hot Spring Sediment	MSPTLIPLAVFAMVVLIVAIVHVTKLRDKEIALQQRLHAAQLEHQRKMQELQAELERVKKD*
Ga0105152_100531913	3300009039	Lake Sediment	MESPFIIPLAVFAMVVLIVAIVKLAKTRDREIEVQQRLHLEQLEHQRKMQELERELARVKKGG*
Ga0105152_101791582	3300009039	Lake Sediment	MESPLIIPLAVFAMVVLIVAIVKLAKIRERELEVQQKLHLEQMEHQRKMQELELELARLRKGE*
Ga0116104_10384843	3300009614	Peatland	MLSPFVIPLGVFAMVAVIVAITHMAKLRDKEMQIQQQLHAAQLEHQRKMLELQTELERVKRG*
Ga0116223_104573752	3300009839	Peatlands Soil	MIPLAVFAMVVLIVAIVNLVSIREKEIDVHQKLYATEMEHQRKMRELELELERIKQGS*
Ga0136847_101350913	3300010391	Freshwater Sediment	IIPLACFAMVVLIVAITQMVKVRDKEMEVHQKLHQEQLQHQLRMKELDLELARVRQTGGLAG*
Ga0136847_118646392	3300010391	Freshwater Sediment	MFSPFIIPLAAFAMVVLIVAITQLAKIRDKEMEAQQKLHLEQLEHQRKMQELELELPRIKQG*
Ga0136847_124415844	3300010391	Freshwater Sediment	MDSPVIIPLAVFAMVALIVAITKMAKVRDRELEVQQRLHLEQLEHQRKMKELEVELERVKQAM*
Ga0136847_128920981	3300010391	Freshwater Sediment	MFPPTIIPLAVFLMVVLIVAISQIARLRDKEIQVQQQLHAAQLEHQRKMLELQAELERVKKEA*
Ga0138572_10681922	3300011077	Peatlands Soil	MIPLAVFAMVVLIVAIVNLVSIREKEIDVHQKLYATEMEHQRKMRELELELQRIKQGS*
Ga0138560_12125721	3300011083	Peatlands Soil	LAVFAMVVLIVAIVNLVSIREKEIDVHQKLYATEMEHQRKMRELELELERIKQGT*
Ga0153915_126428191	3300012931	Freshwater Wetlands	MHSPFIIPLAIFALAVIIVAIVKLAKLRDQEMEVRRRLHLEQLEHQRKMQELQLELERVKSKQ*
Ga0153915_131589031	3300012931	Freshwater Wetlands	PLIIPLAVFAMVALIVGITKMAKIRDRELEVHQRLHLEQLEHERKMKALELELERARKAM
Ga0153916_101138325	3300012964	Freshwater Wetlands	MDSPAIIPLAVFAMVVLIVAIVKLAKTRDREIEVQQRLHLEQLEHQRKMQELERELERVKKGG*
Ga0153916_113913513	3300012964	Freshwater Wetlands	MDSPVIIPLAAFAMVVLIVAIAKLAKVRDREIELQQRLHLEQMEHQRKMQELELELTRLRKGG*
Ga0153916_118287741	3300012964	Freshwater Wetlands	MHSPFIIPLAIFALAVIIVAIVKLAKLRDQEMEVRRRLHLEQLEHQRKMQELQLELERVKSKG*
Ga0153916_123716671	3300012964	Freshwater Wetlands	MPRLWGKEADTMHTPFIIPLSVFAMVVLIVAIVKLAKLRDKEMEVQQRLHLEQLDHQRKMQELQLELERVKSKQ*
Ga0181533_12479172	3300014152	Bog	MIPLAVFAMVILIVAIVNLVSIREKEIDVHQKLYATEMEHQRKMRELELELERIKQRT*
Ga0181517_100029987	3300014160	Bog	MVVIIVAIANIAGLREVEIDVHQKLHAKEMEHQRKMRELDMELERIKSGM*
Ga0181538_103803693	3300014162	Bog	VPLAVFAMVVVIVAITQLAGIRDKELEVHEKLHMDELEHQRKMQELESELQRIKQGT*
Ga0182016_105377952	3300014493	Bog	MSPFFIPLGVFAMVVLIVAITQMVGIRDKEIEVHQKLHLEEMDHQRKMRELELELERIKQGS*
Ga0181525_102788721	3300014654	Bog	MSPIVIPLAVFAMVVLIVAIANVTNLRNREIEVHQQVHAQEMEHRTKMRVLDLELQRIKQGT*
Ga0187803_101190051	3300017934	Freshwater Sediment	MDTPFIIPLGVFAMVVLIVAITQLVKVRDMEMDVHQRLHQEELEHQRKMRELELELERVKSGGKG
Ga0187803_104902082	3300017934	Freshwater Sediment	MESPVIIPLGVFAMVVLIVAISHLVKIRDKEMDVQQRLHQEELEHQRKMRELDLELERVRESR
Ga0187850_100149065	3300017941	Peatland	MLSPFVIPLGVFAMVAVIVAITHMAKLRDKEMQIQQQLHAAQLEHQRKMLELQTELERVKRG
Ga0187850_100447726	3300017941	Peatland	MPMSPFLIPLAVFAMVVLIVAITHTARIREKEVEVQQKLHVQEMEHQRIMRELELELER
Ga0187879_102359763	3300017946	Peatland	MSPFFIPLGVFAMVVLIVAITQMISIRDKEMEVHQRLHLEEMDHQRKMRELELELQRIKHGT
Ga0187781_100571454	3300017972	Tropical Peatland	MSPFLIPLGVLAMVVLIVAITQLVKLREKEMEVQQKLHLEEMDHQRRMRELELELERIKQVK
Ga0187780_104867463	3300017973	Tropical Peatland	MSPFVIPLGVFAIVALIVAITQVAKIHDLELEVHSRLHLEEMEHQRQMHEMKLELERIRREK
Ga0187782_100260788	3300017975	Tropical Peatland	MSPFLIPLGVFAMVVLIVAITQLVKLREKEMEVQQKLHLEEMDHQRRMRELELELERIKQVK
Ga0187782_105708153	3300017975	Tropical Peatland	MSPFVIPLAVFAMVVLIVAIAELTKIRNLEVDIHQKLHLEEMEHRQKLQELELQLQRIKQGA
Ga0187878_10038795	3300018005	Peatland	MESPFIIPLAVFAMVVLIVAIVKLAKTRDREIEVQQRLHLEQLEHQRKMQELERELERVKKGG
Ga0187886_10616141	3300018018	Peatland	MESPFIIPLAVFAMVVLIVAIVKLAKTRDREIEVHQRLHLEQLEHQRKMQELELELARLKKSG
Ga0187881_102617791	3300018024	Peatland	MSPFFIPLAVFAMVVLIVAITQVANLRGKEMEVHQKLHLEEMEHLRKMRELELELERIKQGT
Ga0187885_102452772	3300018025	Peatland	VFAMVVLIVAIAEVAKIRNLEIEIHQKLHAKEMEHQRKMRELDLELERIKQGT
Ga0187867_100804373	3300018033	Peatland	MSPFFIPLGVFAMVVLIVAITQMVGIRDKEIEVHQKLHLEEMDHQRKMRELELELERIKQGS
Ga0187871_102009793	3300018042	Peatland	MSPFFIPLGVFAMVVLIVAITQMISIRDKEMEVHQRLHLEEMDHQRKMRELELELERIKQGS
Ga0187784_113020982	3300018062	Tropical Peatland	MSPFVIPLAVFAMVVLIVAIAELTKIRNLEVDIHQKLHLEEMEHRQKLQELELQRQRIKQGA
Ga0187772_109803752	3300018085	Tropical Peatland	IPLAVFAMVVLIVAMAELTKIRNLGVEVHQKLHVEEMEHQRKMRELELGLERIKSGA
Ga0187769_100891203	3300018086	Tropical Peatland	MESPSIIPLGVFLMVVLIVAITQLVKIRDMEIDVHQQLHQEELEHQRKMRELDLELERLKDSNQ
Ga0187769_113329811	3300018086	Tropical Peatland	MSPLVIPLGIFAMVVLIVAITQVVKIRDKELEVQHNVHMEELDHRRRMRELELELERAKLGK
Ga0187771_100314518	3300018088	Tropical Peatland	MGPAIIPLAVFAMVVLIVAITHMTKIRDKEMEVQQRLHEEELEHQRKMRELDLELQRVRESR
Ga0187771_100865012	3300018088	Tropical Peatland	MGPAIIPLAVFAMVVLIVAISHMAKIRDKEIDVQQRLHEEELEHQRKMRELDLELQRVRESR
Ga0187771_112681151	3300018088	Tropical Peatland	YAVNHPLGGFRKGVLIVAISQLVKIRDLEMDVHQKLHQEELEHQRKMRELDLELERVKSS
Ga0187771_114098611	3300018088	Tropical Peatland	MESPSIIPLGVFLMVVLIVAITQLVKIRDMEIDVHQQLHQEELEHQRKMREL
Ga0187771_114817641	3300018088	Tropical Peatland	MDSDWIIPLAVFAMVVLIVAIVSLVRLRETEMEVHQRLHMEEAEHQRKMRELELDLERVKQGP
Ga0187771_115245932	3300018088	Tropical Peatland	MFVPLVIFAMVVLIVALIHVTKIRDLEIEIHGKLQAREIEHLCKMREQELELERIKQGA
Ga0187771_115612172	3300018088	Tropical Peatland	MSPHLIPLEVFAMVVLIVAITQTHGIRNVEWEVQQKLHALEMEHQRKMRELELEFERIKEQA
Ga0187774_109533211	3300018089	Tropical Peatland	NQTPEAPVIIPLAAFAMVVLIVAIVKLAKIRDRELEVQQKLHLEQMEHQRKMQELELELARLRKRE
Ga0187796_12951191	3300019264	Peatland	MVVLIVAITQLVRLREKEMDVQQKLHLEEMDHQHRMRELELEIERIKQVK
Ga0187794_12390351	3300019273	Peatland	LGVFAMVILIVAITHLVKLREKEMDVQQKLHLDEMEHQRRMRELDLEMERIKQVK
Ga0187794_14877302	3300019273	Peatland	FAMVVLIVAMAELTKIRNLEVEVHQKLHLEELEHQRKMRELELELERIKQGT
Ga0187798_15480051	3300019275	Peatland	MSPLVIPLAVFAMVVLIVAIAEMTKIRSLEVDFHQKLHRAEMEHQQKMRELEL
Ga0209172_100070556	3300025310	Hot Spring Sediment	MFSPTMVPLALFLMVVVIVALTQVVKLRDKEIAVQRQLHAATLEHQRKMEELQAELERVKKGGSAISP
Ga0209172_100519725	3300025310	Hot Spring Sediment	MSPTLIPLAVFAMVVLIVAIVHVTKLRDKEIALQQRLHAAQLEHQRKMQELQAELERVKK
Ga0209640_100992464	3300025324	Soil	MESPVIIPLAVFAMVALIVAITKMAKVRDRELEVQQRLHLEQLEHQRKMKELELELERVKQGN
Ga0209182_100038217	3300025843	Lake Sediment	MESPLIIPLAVFAMVVLIVAIVKLAKIRDRELEVQQKLHLEQMEHQRKMQELELELARLRKGE
Ga0209182_100784033	3300025843	Lake Sediment	IPLAVFAMVVLIVAIVKLAKTRDREIEVQQRLHLEQLEHQRKMQELERELARVKKGG
Ga0209580_100101973	3300027842	Surface Soil	MDNGLLIPLAVFAMVVLIVGITGMAKLHDKEMDVQQSLHAELLEHQRKMKELDQELERLKSGL
Ga0209777_100037238	3300027896	Freshwater Lake Sediment	MDTPFIIPLGVFVMVVLIVAITQLVKVRDMEMDVHQRLHQEELEHQRKMRELDLELERLKDSGK
Ga0209777_101406762	3300027896	Freshwater Lake Sediment	MLSPFVIPLGVFAMVAVIVAITHMAKLRDKEMQIQQQLHAAQLEHQRKMLELQTELERVKQG
Ga0272448_11965614	3300031463	Sediment	MDSPVIIPFAVFAMVVLIVAIVNLAKTRDREIEVQQRLHLERLEHERKMKELELELERIKSGG
Ga0307380_100939171	3300031539	Soil	MFSPFIIPLAVFAMVALVVAITQVSKIRDKEMEVQQKLHLEQLEHQRKMQELELELQRV
(restricted) Ga0315309_10061827	3300031604	Sediment	VIIPLAAFAMVVLLVAIVKLAKIRDRELEVQQKLHLEQMEHQRKMQELELELARLRKGE
Ga0315291_1000154719	3300031707	Sediment	VIIPLAAFAMVVLIVAIVKLAKIRDRELEVQQKLHLEQMEHQRKMQELELELARLRKGE
Ga0315291_100197294	3300031707	Sediment	MESPLIIPLAVFAMVVLIVAITKMAKIRDREIEVHQRLHLEQLEHQRKMKELELELDRVKQGK
Ga0315291_103621871	3300031707	Sediment	MESPLIIPLGVFAMVVLIVAITKMAKIRDREIEVHQRLHLEQLEHQRKMKELELELERVKQGK
Ga0315288_100596846	3300031772	Sediment	MESPLIIPLAVFAMVVLIVAITKMAKIRDREIEVHQRLHLEQLEHQRKMKELELELERVKQGK
Ga0315288_106181263	3300031772	Sediment	MDSPLIIPLAVFAMVVLIVAIVKLAKTRDREIEVQQRLHLEQLEHQRKMQELERELERVKKGG
Ga0315280_1000009731	3300031862	Sediment	MFIPLAVFAMVVVIVAITQLAKTRDKEIEVHQRLHQEELEHQRKMRELELELERVKQGK
Ga0315280_1000420919	3300031862	Sediment	MSSPFIIPLAFFAMVVLIVAIVTMVKIRDKEIEVQHRLHLEELEHRRKMQELEREAERLKGAK
Ga0315280_100316807	3300031862	Sediment	VIIPLAAFAMVVLIVAIVKLAKIRDRELEVQQKLHLEQLEHQRKMQELELELARLRKGE
Ga0315280_100950873	3300031862	Sediment	MESPLIIPLAVFAMVVLLVAITKLAKIRDKEMEVQQRLHLEQMEHQRKMQELERELERVKKGG
Ga0315285_103278941	3300031885	Sediment	MESPLIIPLAVFAMVVLIVGIVKLAKIRDRELEVQQKLHLELMEHQRKMQELELELARLRKGE
Ga0315294_105414684	3300031952	Sediment	VIIPLAAFAMVVLIVGIVKLAKIRDRELEVQQKLHLELMEHQRKMQELELELARLRKGE
Ga0326597_102053592	3300031965	Soil	MFSPFIIPLASFVMVVLIVAITQMVKIRDKEMEVQQKLHLEQLEHQRKMQELEIELQRVKGG
Ga0315274_106062261	3300031999	Sediment	MESPLIIPLGVFAMVVLIVAITKMAKIRDREIEVHQRLHLEQLEHQRKMKELELEQTREARE
Ga0315289_106766264	3300032046	Sediment	MESPLIIPLAVFAMVALLVAIAKLAKIRDKEMEVQQRLHLEQMEHQRKMQELERELERV
Ga0315282_1000292411	3300032069	Sediment	MSSPFIIPLAFFAMVVLIVAIVTMVKIRDKEMEVQQRLHLEELEYRRKMQELEREAERLKGAK
Ga0315282_100042918	3300032069	Sediment	MFSPFLIPLAVFAMVAVIVAITQMAKLRDKEMQIQQQLHAAQLEHQRKMLELQAELERVKLG
Ga0315282_100273467	3300032069	Sediment	MHTPFIIPLSVFAMVVLIVAIVKLAKIRDKEMEVQQRLHLEQLEHQRKMQELQLELERLKPQG
Ga0315282_102802051	3300032069	Sediment	MHILSNPLAVFALVVLIVAITAVARIRDKEIEVQQRLYLEEMAHQRKLKELELELERVRQGR
Ga0315282_105509331	3300032069	Sediment	MHSPLIVPLSVFAMVVLIIAIVKLAKIRDKEMEVQQRLHLEELEHRRKMQELQLELERVKSKE
Ga0315279_100711074	3300032070	Sediment	MESPLIIPLAVFAMVVLLVAITKLAKIRDKEMEVQQRLHLEQMAHQRKMQELERELERVKKGG
Ga0315279_105004891	3300032070	Sediment	MESPLIIPLGVFAMVVLIVAITKMAKIRDREIEVHQRLHLEQLEHQRKMKELELDLERVKQGK
Ga0315277_100452095	3300032118	Sediment	MESPLIIPLAVFAMVVLIVAITKMAKIRDREIEVHQRLHLEQLEHQRKMKELELDLERVKQGK
Ga0315295_106156493	3300032156	Sediment	MDSAAIISLAAFAMAVLIVAIVKLAKIRDRELEVQQKLHLEQMEHQRKMQELELELARLRKGE
Ga0315281_100472505	3300032163	Sediment	MSPLLVPLAAFAAVVLIVAMVNVTRLRDKEIAVQQQLHAAQLDHQRKMAELQAELERVKQGG
Ga0315268_100889346	3300032173	Sediment	MSPTVVPLAAFAAVVLIVALVKFTRLRDKEIAVQQQMHAAQLEHQRKMAELQAELERVKQGG
Ga0315268_102539434	3300032173	Sediment	MHTPFIIPLLIFAMVVIIVAIVKLGRLRDKEMEVQQRLHLEQLEHQRKMQELQLELERVKSKE
Ga0315268_113379571	3300032173	Sediment	MESPLIIPLGVFAMVVLIVAITKMAKIRDREIEVHQRLHLEQLEHQRKMKELELELERVKQEK
Ga0315286_100267914	3300032342	Sediment	MESPFIIPLAVFAMVVLIVAIVKLAKTRDREIEVQQRLHLEQLEHQRKMKELELELERIKKGG
Ga0315275_101128865	3300032401	Sediment	MESPFIIPLAVFAMVVLIVAIVKLAKIRDREIEVQQRLHLEQLEHQRKMQELELELARAKKGG
Ga0335085_100202908	3300032770	Soil	MSPFLIPLGVFAMVVVLVAIARTVRVRDKEMEVHQNLHMEELEHVRKMRELDLELERIKQGS
Ga0335085_106596762	3300032770	Soil	MWIPLAVFAMVVLIVAITQMVSLRETEVDVHQKLSASEMEHQRKMQELELELQRVKQGN
Ga0335078_116582271	3300032805	Soil	MSPLMIPLGIFAMVVLIVAITHLVKLREKEMEVQQKLHLDGMEHQRRMRELDLELERIKQVK
Ga0335072_111446422	3300032898	Soil	MSPFLIPLGIFAMVVLIVGISHTARIRDKEMQVHQRLHLEEMEHRRKMQELELELERIKQGN
Ga0334722_100358676	3300033233	Sediment	MDSPLVIPLAVFAMVALMVGISKMAKIRDRELEVHQRLHLGQLEHERKMKELELELERVRKAM
Ga0326728_101642334	3300033402	Peat Soil	IVPLGVFAMVVLLVAITQIVKIREKEMEVQQKLYIEEMEHHRRMRELELELDRIKQGK
Ga0316624_100158227	3300033486	Soil	MDSPVIIPLAVFAMVALIVAIVKMAKVRDRELEVQQRLHLEQLEHQRKMTELEIELERVKQAM
Ga0316624_122434901	3300033486	Soil	MDSPAIIPLAVFAMVALIVAITKMAKVRDRELEVQQRLHLEQLEHQRKMKELELELERIKQG
Ga0316628_10000761311	3300033513	Soil	MHSPLIIPLSVFAMVVLIVAIVKLAKIRDKEMEVHQRLHMEQLEHQRKMQELQRELDRVKSKE
Ga0316628_1000943844	3300033513	Soil	MDSPAIIPLAVFAMVALIVAITKMAKVRDRELEVQQRLHLEQLEHQRKMKELELELERIKQGN
Ga0316628_1003234764	3300033513	Soil	MDSPLIIPLAVFAMVVLIVAIVKLAKTRDREMEVQQRLHLEQLEHQRKMQELERELERVKKGG
Ga0314861_0155880_684_872	3300033977	Peatland	MSPFVIPLGIFAMVVLIVAITQVVKIRDKELEVQHNVHMEELDHRRRMRELELELERAKLGK
Ga0314861_0500830_108_299	3300033977	Peatland	MDSSLIIPLAVFAMVVLIVAIVSLVRVRETEMEVHQRLHMEEMDHQRKMRELELDLERVKQGR
Ga0373901_103088_148_339	3300034083	Sediment Slurry	MDSPAIIPLAVFAMVALIVAITKMAKVRDRELEVQQRLHLEQLEHQRKMKELELVLERVKQGM

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters