Metagenome / Metatranscriptome Family F083823

Basic Information
Family ID	F083823
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	63 residues
Representative Sequence	DPRTAVMNAEVQAKIARQNAETMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLSRQG
Number of Associated Samples	99
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	1.85 %
% of genes near scaffold ends (potentially truncated)	87.50 %
% of genes from short scaffolds (< 2000 bps)	63.39 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	No

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (66.071 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake (25.893 % of family members)
Environment Ontology (ENVO)	Unclassified (58.036 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (62.500 % of family members)

Multiple Sequence Alignments

Select alignment to view:

Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80. 1B570J40625_1000970411 2B570J40625_1002097591 3JGI25908J49247_100150281 4JGI25920J50251_100123241 5JGI25911J50253_101411541 6JGI25912J50252_100143091 7JGI25925J51416_101461972 8Ga0068872_103166952 9Ga0049081_102734842 10Ga0075473_100603224 11Ga0103274_11339892 12Ga0075460_102862492 13Ga0075458_100525591 14Ga0102853_11148172 15Ga0102877_12236501 16Ga0102895_11955552 17Ga0102865_12194281 18Ga0114347_10566641 19Ga0114347_11847042 20Ga0114351_11407061 21Ga0114355_11845221 22Ga0114841_10650461 23Ga0114353_11157602 24Ga0114876_10136311 25Ga0102860_11996722 26Ga0105098_100316121 27Ga0114968_102757761 28Ga0114966_100926441 29Ga0105097_102047593 30Ga0105096_103129101 31Ga0114969_100477956 32Ga0114974_100515051 33Ga0114974_100860334 34Ga0114971_100482015 35Ga0114971_105078992 36Ga0153801_10067201 37Ga0172363_101660064 38Ga0177922_102585234 39Ga0177922_103497016 40Ga0177922_105769725 41Ga0177922_106121385 42Ga0172376_102103351 43Ga0181339_10082662 44Ga0181364_10235972 45Ga0181363_10702761 46Ga0181350_11449161 47Ga0181350_11679202 48Ga0181347_10678401 49Ga0181365_10590941 50Ga0181352_11839662 51Ga0181343_10051592 52Ga0181358_10217941 53Ga0181357_10551361 54Ga0181355_12017141 55Ga0181355_13287292 56Ga0181361_1060721 57Ga0181361_1102981 58Ga0211731_111692366 59Ga0208086_10144281 60Ga0208235_10026696 61Ga0207939_10302841 62Ga0207942_10106772 63Ga0208599_10103281 64Ga0208486_10217011 65Ga0194041_102196461 66Ga0181353_10150874 67Ga0181354_10642991 68Ga0181351_10510604 69Ga0181351_11729062 70Ga0255228_10707301 71Ga0256299_10984412 72Ga0255095_10049761 73Ga0209552_10424021 74Ga0208960_11685302 75Ga0209077_11403511 76Ga0209704_10724981 77Ga0209597_10290901 78Ga0209596_10343516 79Ga0209444_102869101 80Ga0209296_13938362 81Ga0209768_101539111 82Ga0209246_100222551 83Ga0209668_101406781 84Ga0209298_100152951 85Ga0238435_1028794 86Ga0315291_105547843 87Ga0315293_102942251 88Ga0315907_101129825 89Ga0315274_108252101 90Ga0315272_104497611 91Ga0315284_101320861 92Ga0315902_113018792 93Ga0315277_101901814 94Ga0315277_103082341 95Ga0315295_108563552 96Ga0315268_101041395 97Ga0316195_101782791 98Ga0315270_101332531 99Ga0315270_105605652 100Ga0315287_105626403 101Ga0334722_100612426 102Ga0316625_1022947172 103Ga0316616_1015502922 104Ga0334994_0180036_16_228 105Ga0334996_0064099_1_204 106Ga0335002_0028003_26_250 107Ga0310130_0073008_14_226 108Ga0335029_0054362_2729_2902 109Ga0335036_0161209_1378_1587 110Ga0335051_0094098_8_238 111Ga0335063_0084404_1_198 112Ga0335061_0420844_498_674
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80. 1B570J40625_1000970411 2JGI25908J49247_100150281 3JGI25920J50251_100123241 4Ga0075458_100525591 5Ga0315270_105605652
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80. 1B570J40625_1000970411 2JGI25908J49247_100150281 3JGI25920J50251_100123241 4Ga0075458_100525591 5Ga0315270_105605652
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 92.06% β-sheet: 0.00% Coil/Unstructured: 7.94%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF13578	Methyltransf_24	30.36
PF01755	Glyco_transf_25	22.32
PF04488	Gly_transf_sug	12.50
PF08241	Methyltransf_11	4.46
PF05704	Caps_synth	1.79
PF04041	Glyco_hydro_130	0.89
PF13847	Methyltransf_31	0.89
PF08242	Methyltransf_12	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG3306	Glycosyltransferase involved in LPS biosynthesis, GR25 family	Cell wall/membrane/envelope biogenesis [M]	22.32
COG3774	Mannosyltransferase OCH1 or related enzyme	Cell wall/membrane/envelope biogenesis [M]	12.50
COG2152	Predicted glycosyl hydrolase, GH43/DUF377 family	Carbohydrate transport and metabolism [G]	0.89

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	33.93 %
Unclassified	root	N/A	66.07 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	24.11 %
Unclassified	root	N/A	66.07 %
Viruses	superkingdom	All Organisms → Viruses	9.82 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	20.54 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	3.57 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	9.82 %
Unclassified	root	N/A	66.07 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	3.57 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	9.82 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	7.14 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.89 %
Sar	clade	All Organisms → cellular organisms → Eukaryota → Sar	1.79 %
Unclassified	root	N/A	66.07 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7.14 %
Alveolata	clade	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata	1.79 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.89 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	9.82 %
Unclassified	root	N/A	66.07 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	3.57 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium 13_1_20CM_4_56_7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7	3.57 %
Dinophyceae	class	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1.79 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4.46 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	9.82 %
Unclassified	root	N/A	66.07 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.79 %
unclassified Planctomycetota	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota	0.89 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium 13_1_20CM_4_56_7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7	3.57 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.79 %
Dinophyceae	class	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1.79 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	1.79 %
Planctomycetes bacterium TMED75	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium TMED75	0.89 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	9.82 %
Unclassified	root	N/A	66.07 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium 13_1_20CM_4_56_7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7	3.57 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.79 %
Dinophyceae	class	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1.79 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	1.79 %
Planctomycetes bacterium TMED75	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium TMED75	0.89 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	9.82 %
Unclassified	root	N/A	66.07 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium 13_1_20CM_4_56_7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7	3.57 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.79 %
Dinophyceae	class	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1.79 %
Planctomycetes bacterium TMED75	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium TMED75	0.89 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	9.82 %
Unclassified	root	N/A	66.07 %
unclassified Methylobacterium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium	1.79 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium 13_1_20CM_4_56_7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7	3.57 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.79 %
Dinophyceae	class	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1.79 %
Methylobacterium sp. 77	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp. 77	1.79 %
Planctomycetes bacterium TMED75	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium TMED75	0.89 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	9.82 %
Unclassified	root	N/A	66.07 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
(restricted) 3300013130\|Ga0172363_10166006	Not Available	1513	Open in IMG/M
3300002835\|B570J40625_100097041	Not Available	3667	Open in IMG/M
3300002835\|B570J40625_100209759	All Organisms → cellular organisms → Bacteria	2095	Open in IMG/M
3300003277\|JGI25908J49247_10015028	Not Available	2366	Open in IMG/M
3300003404\|JGI25920J50251_10012324	Not Available	2872	Open in IMG/M
3300003411\|JGI25911J50253_10141154	Not Available	698	Open in IMG/M
3300003412\|JGI25912J50252_10014309	All Organisms → Viruses → Predicted Viral	2602	Open in IMG/M
3300003497\|JGI25925J51416_10146197	Not Available	539	Open in IMG/M
3300005528\|Ga0068872_10316695	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	862	Open in IMG/M
3300005581\|Ga0049081_10273484	Not Available	587	Open in IMG/M

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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	97.32%
Terrestrial	Environmental → Terrestrial	2.68%

Habitat	Taxonomy	Distribution
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.89%
Freshwater	Environmental → Aquatic → Freshwater	89.29%
Marine	Environmental → Aquatic → Marine	8.04%
Soil	Environmental → Terrestrial → Soil	1.79%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	3.57%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	4.46%
Lake	Environmental → Aquatic → Freshwater → Lake	44.64%
Lentic	Environmental → Aquatic → Freshwater → Lentic	35.71%
River	Environmental → Aquatic → Freshwater → River	2.68%
Sediment	Environmental → Aquatic → Freshwater → Sediment	4.46%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	1.79%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	0.89%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.79%

Habitat	Taxonomy	Distribution
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	5.36%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	4.46%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	12.50%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.89%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	0.89%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	32.14%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	29.46%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	4.46%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	2.68%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	2.68%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	1.79%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.79%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Anoxic Zone Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater	0.89%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	2.68%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	4.46%
Fracking Water	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water	0.89%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	8.04%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	6.25%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	5.36%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	2.68%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	1.79%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	1.79%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	25.89%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	9.82%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	1.79%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.89%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	1.79%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	4.46%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	5.36%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	12.50%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment → Sediment	0.89%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.79%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002835	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)	Environmental	Open in IMG/M
3300003277	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD	Environmental	Open in IMG/M
3300003404	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DCMD	Environmental	Open in IMG/M
3300003411	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SD	Environmental	Open in IMG/M
3300003412	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD	Environmental	Open in IMG/M
3300003497	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DN	Environmental	Open in IMG/M
3300005528	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG	Environmental	Open in IMG/M
3300005581	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF	Environmental	Open in IMG/M
3300006875	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNA	Environmental	Open in IMG/M
3300007202	Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Monthly Sampling-Site C) 9 sequencing projects	Environmental	Open in IMG/M

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Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
B570J40625_1000970411	3300002835	Freshwater	AIQQGSDPRTAVMNAEVQAKIARQNAETMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLSRQG*
B570J40625_1002097591	3300002835	Freshwater	VMNAEVQSKIARQNAETMANIERQNTKAMADLARRNAKTTADIQRANATAESNLARQG*
JGI25908J49247_100150281	3300003277	Freshwater Lake	IARQNAETMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLSRQG*
JGI25920J50251_100123241	3300003404	Freshwater Lake	VMNADIQAKIARQNAETMANIQRQNAKTSADLSRRNAKTTADIQRANATAESDLAR*
JGI25911J50253_101411541	3300003411	Freshwater Lake	NAEVQSKIARQNAETMANIERQNTKAMADLARRNAKTTADIQRANATAESNLARQG*
JGI25912J50252_100143091	3300003412	Freshwater Lake	QQGSDPRTAVMNAEVQAKIARQNAETMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLSRQG*
JGI25925J51416_101461972	3300003497	Freshwater Lake	AQQQQAQAIQQGSDPRTAVMNAEVQAKIARQNAETMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLSRQG*
Ga0068872_103166952	3300005528	Freshwater Lake	QGVDPKTAVMNAEVQAKIARQNAETMANIQRQNTKAMADLARRNAKTTADIQRANATAESNLARQG*
Ga0049081_102734842	3300005581	Freshwater Lentic	NAEVQAKIARQNAETMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLSRQG*
Ga0075473_100603224	3300006875	Aqueous	ARQNAETMANIQRQNTKAMADLARRNAKTTADIQRANATAESNLARQG*
Ga0103274_11339892	3300007202	Freshwater Lake	MQMQQAAAIQQGVDPKTAVMNAEVQAKIARQNAEVMANIQRQNTKAMADLARRNAKTTADIQRANATAEADLSRQG*
Ga0075460_102862492	3300007234	Aqueous	IQQGVDPKTMVLNAEIQAKIARQNAETMANIQRQNVKTQADLARRNAKTTADIQRANATAEAQLLRQ*
Ga0075458_100525591	3300007363	Aqueous	MQQQAAAIQQGVDPKTMVLNAEIQAKIARQNAETMANIQRQNVKTQADLARRNAKTTADIQRANATAEAQLLRQ*
Ga0102853_11148172	3300007543	Estuarine	DPRTAVMNAEVQAKIARQNAETMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLSRQG*
Ga0102877_12236501	3300007548	Estuarine	SDPRTAVMNAEVQAKIARQNAETMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLSRQG*
Ga0102895_11955552	3300007629	Estuarine	QQGSDPRTAVMNAEVQSKIARQNAETMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLSRQG*
Ga0102865_12194281	3300007639	Estuarine	IQQGSDPRTAVMNAEVQAKIARQNAETMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLSRQG*
Ga0114347_10566641	3300008114	Freshwater, Plankton	AMAQQQQAMAIQQGVDPRTAVMNAEVQAKIARQNAETMANIQRQNTKAMADLARRNAKTTADIQRANATAESNLARQG*
Ga0114347_11847042	3300008114	Freshwater, Plankton	EVQAKIARQNAETMANIQRQNTKAMADLARRNAKTTADIQRANATAESNLARQG*
Ga0114351_11407061	3300008117	Freshwater, Plankton	TAVMNAEVQAKIARQNAETMANIQRQNTKAMADLARRNAKTTADIQRANATAESNLARQG
Ga0114355_11845221	3300008120	Freshwater, Plankton	VMNAEVQAKIARQNAETMANIQRQNTKAMADLARRNAKTTADIQRANATAESNLARQG*
Ga0114841_10650461	3300008259	Freshwater, Plankton	AVMNAEVQAKIARQNAETMANIQRQNTKAMADLARRNAKTTADIQRANATAESNLARQG*
Ga0114353_11157602	3300008264	Freshwater, Plankton	MNAEVQAKIARQNAETMANIQRQNTKAMADLARRNAKTTADIQRANATAESNLARQG*
Ga0114876_10136311	3300008448	Freshwater Lake	AEVQAKIARQNAETMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLARQA*
Ga0102860_11996722	3300009056	Estuarine	ARQNAETMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLARQG*
Ga0105098_100316121	3300009081	Freshwater Sediment	AKIARQNAETMANIQRQNTKAMADLARRNAKTTADIQRANATAESNLARQG*
Ga0114968_102757761	3300009155	Freshwater Lake	MAQQQQAQAIQQGSDPRTAVMNAEVQSKIARQNAETMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLSRQT*
Ga0114966_100926441	3300009161	Freshwater Lake	QAHAIQQGSDPRTAVMNAEDHSKIARQNAETMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLSRQG*
Ga0105097_102047593	3300009169	Freshwater Sediment	SDPRTAVMNAEVQAKIARQNAETMANIQRQNTKAMADLARRNAKTTADIQRANATAESNLARQG*
Ga0105096_103129101	3300009170	Freshwater Sediment	MAIQQGSDPRTAVMNAEVQAKIARQNAETMANIQRQNTKAMADLARRNAKTTADIQRANATAESNLARQG*
Ga0114969_100477956	3300009181	Freshwater Lake	MNADIQAKIARQNAETMANIQRQNAKTNADLSRRNAKTTADIQRANATAESDLAR*
Ga0114974_100515051	3300009183	Freshwater Lake	VMNAEVQSKIARQNAETMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLSRQG*
Ga0114974_100860334	3300009183	Freshwater Lake	QAKIARQNAETMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLSRQV*
Ga0114971_100482015	3300009185	Freshwater Lake	QGSDPRTAVMNAEVQSKIARQNAETMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLSRQG*
Ga0114971_105078992	3300009185	Freshwater Lake	EVQSKIARQNAETMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLSRQG*
Ga0153801_10067201	3300012017	Freshwater	AEVQAKIARQNAETMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLSRQG*
(restricted) Ga0172363_101660064	3300013130	Sediment	GVDPKTAVMNAEVQAKIARQNAEAAANIKRQNTKAMADLARRNAKTTADIQRANATAEANLGRQGE*
Ga0177922_102585234	3300013372	Freshwater	QAQMQQAQAIQQGTDPRTAVMNADIQAKIARQNAETMANIQRQNAKTSADLSRRNAKTTADIQRANATAESDLAR*
Ga0177922_103497016	3300013372	Freshwater	QGSDPRTAVMNAEVQAKIARQNAETMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLSRQG*
Ga0177922_105769725	3300013372	Freshwater	NAEVQAKIARQNAETMANIQRQNTKAMADLARRNAKTTADIQRANATAESNLARQG*
Ga0177922_106121385	3300013372	Freshwater	AVMNAEVQAKIARQNAETMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLSRQG*
(restricted) Ga0172376_102103351	3300014720	Freshwater	ARQNAEVAANIQRQNTKAMADLARRNAKTTADIQRANATAEANLGRQGE*
Ga0181339_10082662	3300017700	Freshwater Lake	QQQQAQAIQQGSDPRTAVMNAEVQAKIARQNAETMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLSRQG
Ga0181364_10235972	3300017701	Freshwater Lake	VQSKIARQNAETMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLSRQG
Ga0181363_10702761	3300017707	Freshwater Lake	QQQQAMPIQQGVDPKPAVLNAEAQAKTARQNAEVMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLSRQG
Ga0181350_11449161	3300017716	Freshwater Lake	AMAQQQQAQAIQQGSDPRTAVMNAEVQSKIARQNAETMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLSRQG
Ga0181350_11679202	3300017716	Freshwater Lake	SKIARQNAETMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLSRQG
Ga0181347_10678401	3300017722	Freshwater Lake	AIQQGVDPKTAVMNAEVQSKIARQNAETMANIERQNTKAMADLARRNAKTTADIQRANATAESNLARQG
Ga0181365_10590941	3300017736	Freshwater Lake	AKIARQNAETMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLSRQG
Ga0181352_11839662	3300017747	Freshwater Lake	DPRTAVMNAEVQAKIARQNAETMANIQRQNTKAIADLSRRNAKTTADIQRANATAESNLARQG
Ga0181343_10051592	3300017766	Freshwater Lake	MAQQQQAMAIQQGVDPKTAVLNAEVQAKIARQNAEVMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLARQG
Ga0181358_10217941	3300017774	Freshwater Lake	AEVQAKIARQNAETMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLSRQG
Ga0181357_10551361	3300017777	Freshwater Lake	IQQGSDPRTAVMNAEVQSKIARQNAETMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLSRQG
Ga0181355_12017141	3300017785	Freshwater Lake	KTAVLNAEVQSKIARQNAETMANIQRQNTKAMADLARRNAKTTADIQRANATAESNLARQ
Ga0181355_13287292	3300017785	Freshwater Lake	MNAEVQAKIARQNAETMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLLRQG
Ga0181361_1060721	3300019783	Freshwater Lake	AVMNAEGQAKIARQNAETMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLSRQG
Ga0181361_1102981	3300019783	Freshwater Lake	SDPRTAVMNAEVQSKIARQNAETMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLSRQG
Ga0211731_111692366	3300020205	Freshwater	VQAKIARQNAETMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLSRQG
Ga0208086_10144281	3300020510	Freshwater	DPRTAVMNAEVQAKIARQNAETMANIQRQNTKAMADLARRNAKTTADIQRANATAESNLARQG
Ga0208235_10026696	3300020530	Freshwater	KIARQNAETMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLSRQG
Ga0207939_10302841	3300020536	Freshwater	QQQAQAIQQGSDPRTAVMNAEVQAKIARQNAETMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLSRQG
Ga0207942_10106772	3300020549	Freshwater	AMAQQQQAQAIQQGSDPRTAVMNAEVQAKIARQNAETMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLSRQG
Ga0208599_10103281	3300020554	Freshwater	QGSDPRTAVMNAEVQAKIARQNAETMANIERQNTKAMADLARRNAKTTADIQRANATAESNLARQG
Ga0208486_10217011	3300020556	Freshwater	DPRTAVMNAEVQAKIARQNAETMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLSRQG
Ga0194041_102196461	3300021340	Anoxic Zone Freshwater	QGTDPRTAVMNADIQAKIARQNAETMANIQRQNAKTSADLSRRNAKTTADIQRANATAESDLAR
Ga0181353_10150874	3300022179	Freshwater Lake	KTAVLNAEVQAKIARQNAEVMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLARQ
Ga0181354_10642991	3300022190	Freshwater Lake	MAIQQGVDPKTAVMNAEVQSKIARQNAETMANIERQNTKAMADLARRNAKTTADIQRANATAESNLARQG
Ga0181351_10510604	3300022407	Freshwater Lake	QQAMAQQQQAMAIQQGVDPKTAVMNAEVQAKIARQNAETMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLARQG
Ga0181351_11729062	3300022407	Freshwater Lake	DIQAKIARQNAETMANIQRQNAKTSADLSRRNAKTTADIQRANATAESDLAR
Ga0255228_10707301	3300024531	Freshwater	QGVDPKTAVLNAEVQAKIARQNAETMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLARQG
Ga0256299_10984412	3300024533	Freshwater	VQSKIARQNAETMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLARQG
Ga0255095_10049761	3300027489	Freshwater	EVQSKIARQNAETMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLARQG
Ga0209552_10424021	3300027563	Freshwater Lake	QQAMAIQQGSDPRTAVMNAEVQAKIARQNAETMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLSRQG
Ga0208960_11685302	3300027649	Freshwater Lentic	MNAEVQSKIARQNAETMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLSRQG
Ga0209077_11403511	3300027675	Freshwater Sediment	NAEVQAKIARQNAETMANIQRQNTKAMADLARRNAKTTADIQRANATAESNLARQG
Ga0209704_10724981	3300027693	Freshwater Sediment	QAMAIQQGSDPRTAVMNAEVQAKIARQNAETMANIQRQNTKAMADLARRNAKTTADIQRANATAESNLARQG
Ga0209597_10290901	3300027746	Freshwater Lake	RTAVMNAEVQAKIARQNAETMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLSRQ
Ga0209596_10343516	3300027754	Freshwater Lake	DIQAKIARQNAETMANIQRQNAKTNADLSRRNAKTTADIQRANATAESDLAR
Ga0209444_102869101	3300027756	Freshwater Lake	AQQQQAQAIQQGSDPRTAVMNAEVQAKIARQNAETMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLSRQG
Ga0209296_13938362	3300027759	Freshwater Lake	EVQSKIARQNAETMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLSRQG
Ga0209768_101539111	3300027772	Freshwater Lake	QAKIARQNAETMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLSRQG
Ga0209246_100222551	3300027785	Freshwater Lake	AEVQSKIARQNAETMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLSRQG
Ga0209668_101406781	3300027899	Freshwater Lake Sediment	AEIQAKIARQNAEAMANIQRQNVKTQADLARRNAKTTADIQRANATAEAQLMRQ
Ga0209298_100152951	3300027973	Freshwater Lake	QQAQAIQQGSDPRTAVMNAEVQSKIARQNAETMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLSRQG
Ga0238435_1028794	3300029349	Freshwater	AEVQAKIARQNAEVMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLARQG
Ga0315291_105547843	3300031707	Sediment	QGSDPRTAVMNAEVQAKIARQNAETMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLSRQG
Ga0315293_102942251	3300031746	Sediment	QAQAIQQGTDPRTAVMNADIQAKIARQNAETMANIQRQNAKTNADLSRRNAKTTADIQRANATAESDLAR
Ga0315907_101129825	3300031758	Freshwater	VQAKIARQNAETMANIQRQNTKAMADLARRNAKTTADIQRANATAESNLARQG
Ga0315274_108252101	3300031999	Sediment	AQAIQQGSDPRTAIKNAEVQSKIARQDAETMASIQRQNTKSTADLAFRNAKTTADIQRANAIAESNLSRQA
Ga0315272_104497611	3300032018	Sediment	QQQAQAIQQGSDPRTAIKNAEVQSKIARQDAETMASIQRQNTKSTADLAFRNAKTTADIQRANAIAESNLSRQV
Ga0315284_101320861	3300032053	Sediment	QQGTDPRTAVMNADIQAKIARQNAETMANIQRQNAKSNADLSRRNAKTTADIQRANATAESDLAR
Ga0315902_113018792	3300032093	Freshwater	GAIQQGVDPKTAVMNAEIQAKIARQNAEAAANIQRQNTKAMADLARRNAKTTADIQRANATAEAQLLRQ
Ga0315277_101901814	3300032118	Sediment	AVMNAEVQAKIARQNAETMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLSRQG
Ga0315277_103082341	3300032118	Sediment	AQAIQQGSDPRTAIKNAEVQSKIARQDAETMASIQRQNTKSTADLAFRNAKTTADIQRANAIAESNLSRQV
Ga0315295_108563552	3300032156	Sediment	PRTAVMNADIQAKIARQNAETMANIQRQNAKSNADLSRRNAKTTADIQRANATAESDLAR
Ga0315268_101041395	3300032173	Sediment	QQAQAIQQGTDPRTAVMNADIQAKIARQNAETMANIQRQNAKSNADLSRRNAKTTADIQRANATAESDLAR
Ga0316195_101782791	3300032263	Sediment	AEVQSKIARQNAETMANIQRQNTKAMADLARRNAKTTADIQRANATAESNLARQG
Ga0315270_101332531	3300032275	Sediment	EVQAKIARQNAETMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLSRQG
Ga0315270_105605652	3300032275	Sediment	KNAEVQSKIARQDAETMASIQRQNTKSTADLAFRNAKTTADIQRANAIAESNLSRQA
Ga0315287_105626403	3300032397	Sediment	QAQAIQQGSDPRTAIKNAEVQSKIARQDAETMASIQRQNTKSTADLAFRNAKTTADIQRANAIAESNLSRQG
Ga0334722_100612426	3300033233	Sediment	QQGSDPRTAVMNAEVQAKIARQNAETMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLSRQG
Ga0316625_1022947172	3300033418	Soil	IQQGVDPKTAVLNAEVQSKIARQNAETMANIQRQNTKAMADLARRNAKTTADIQRANATAESNLARQG
Ga0316616_1015502922	3300033521	Soil	KIARQNAETMANIQRQNTKAMADLARRNAKTTADIQRANATAESNLARQG
Ga0334994_0180036_16_228	3300033993	Freshwater	MAIQQGSDPRTAVMNAEVQAKIARQNAETMANIERQNTKAMADLARRNAKTTADIQRANATAESNLARQG
Ga0334996_0064099_1_204	3300033994	Freshwater	QQGVDPKTAMMNAEVQSKIARQNAETMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLARQG
Ga0335002_0028003_26_250	3300034020	Freshwater	MQQAQAIQQGVDPKTAMMNAEVQAKIARQNAEVMANIQRQNEKAMADLARRNAKTTADIQRANATAESNLARQG
Ga0310130_0073008_14_226	3300034073	Fracking Water	MAIQQGVDPKTAVLNAEVQSKIARQNAETMANIQRQNTKAMADLARRNAKTTADIQRANATAESNLARQG
Ga0335029_0054362_2729_2902	3300034102	Freshwater	MNAEVQAKIARQNAETMANIQRQNTKAMADLARRNAKTTADIQRANATAESNLARQG
Ga0335036_0161209_1378_1587	3300034106	Freshwater	AIQQGVDPKTAVLNAEVQAKIARQNAEVMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLARQG
Ga0335051_0094098_8_238	3300034109	Freshwater	MQMQQAQAIQQGVDPKTAMMNAEVQSKIARQNAETMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLARQG
Ga0335063_0084404_1_198	3300034111	Freshwater	GVDPKTAVLNAEVQAKIARQNAEVMANIQRQNTKAMADLSRRNAKTTADIQRANATAESNLARQG
Ga0335061_0420844_498_674	3300034168	Freshwater	MMNAEVQAKIARQNAEVMANIQRQNEKAMADLARRNAKTTADIQRANATAESNLARQG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters