NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F083813

Metagenome / Metatranscriptome Family F083813

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F083813
Family Type Metagenome / Metatranscriptome
Number of Sequences 112
Average Sequence Length 39 residues
Representative Sequence DEQKLRSDGYREQIAEALYKGIARYAASSKGVKVASAAK
Number of Associated Samples 98
Number of Associated Scaffolds 112

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 3.57 %
% of genes from short scaffolds (< 2000 bps) 1.79 %
Associated GOLD sequencing projects 94
AlphaFold2 3D model prediction Yes
3D model pTM-score0.51

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (96.429 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(11.607 % of family members)
Environment Ontology (ENVO) Unclassified
(28.571 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(51.786 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58
1JGI12636J13339_10515651
2JGI12627J18819_102168601
3Ga0062387_1010971941
4Ga0062389_1030141961
5Ga0062386_1008702522
6Ga0068968_14408542
7Ga0072322_12280632
8Ga0070735_100251605
9Ga0068857_1009496122
10Ga0070761_107740342
11Ga0070762_100335411
12Ga0070763_102843252
13Ga0070763_103145571
14Ga0070764_106508743
15Ga0075287_10630832
16Ga0070766_104281263
17Ga0075019_103974751
18Ga0075030_1003326114
19Ga0075030_1011018982
20Ga0075030_1016477491
21Ga0073928_100500833
22Ga0073928_101175201
23Ga0102924_12239751
24Ga0099829_109919791
25Ga0099830_113048271
26Ga0116128_11414241
27Ga0116225_13262573
28Ga0116111_10892951
29Ga0116120_12316092
30Ga0116135_10065735
31Ga0116215_13305501
32Ga0116101_10196771
33Ga0126384_113689422
34Ga0126379_127405662
35Ga0136449_1009002331
36Ga0136449_1034622462
37Ga0138575_11231501
38Ga0137393_107330731
39Ga0137384_109694953
40Ga0137398_106656181
41Ga0137395_101825121
42Ga0137395_103677602
43Ga0137419_100450793
44Ga0126369_107741491
45Ga0181531_100413521
46Ga0182015_100479491
47Ga0182024_102734561
48Ga0181516_102331501
49Ga0132258_100819328
50Ga0132256_1021750762
51Ga0187818_100090181
52Ga0187849_12628531
53Ga0187853_103518432
54Ga0187781_105865612
55Ga0187782_110180632
56Ga0187782_114459552
57Ga0187881_104741691
58Ga0187869_100247921
59Ga0187863_101020921
60Ga0187863_103124051
61Ga0187784_109154301
62Ga0187772_112957262
63Ga0187769_100854635
64Ga0187769_103788843
65Ga0187771_116209641
66Ga0210399_113568181
67Ga0210388_108616531
68Ga0210388_109404321
69Ga0210385_103300722
70Ga0210397_114909601
71Ga0210383_112816902
72Ga0210391_100524751
73Ga0210391_100570501
74Ga0210391_100658986
75Ga0182009_108219531
76Ga0224562_10017851
77Ga0208323_10443371
78Ga0208455_10623781
79Ga0208416_10193401
80Ga0207676_111015722
81Ga0209115_10928102
82Ga0208044_11498001
83Ga0209139_103140591
84Ga0209773_102512543
85Ga0209580_106430022
86Ga0209068_106308952
87Ga0209415_101138491
88Ga0209415_104221542
89Ga0302219_100078641
90Ga0308309_109618241
91Ga0311371_108410082
92Ga0311339_113823471
93Ga0311348_109477111
94Ga0302182_101570382
95Ga0311349_107868221
96Ga0311372_127451462
97Ga0311354_104196201
98Ga0310039_103615712
99Ga0170818_1035918511
100Ga0302326_116281911
101Ga0318541_107197002
102Ga0310686_1166432251
103Ga0307478_114859291
104Ga0318536_105318252
105Ga0310916_109038221
106Ga0307479_105735062
107Ga0311301_105964711
108Ga0311301_115288302
109Ga0335078_106971801
110Ga0335075_111780302
111Ga0335077_115465411
112Ga0310914_108994211
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 35.82%    β-sheet: 0.00%    Coil/Unstructured: 64.18%
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Variant

5101520253035DEQKLRSDGYREQIAEALYKGIARYAASSKGVKVASAAKSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.51
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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Visualization
All Organisms
Unclassified
3.6%96.4%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Peatland
Bog Forest Soil
Bog
Peatland
Freshwater Sediment
Iron-Sulfur Acid Spring
Watersheds
Soil
Soil
Vadose Zone Soil
Tropical Forest Soil
Surface Soil
Peatlands Soil
Soil
Forest Soil
Hardwood Forest Soil
Soil
Rice Paddy Soil
Tropical Peatland
Palsa
Permafrost
Forest Soil
Soil
Fen
Palsa
Arabidopsis Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Arabidopsis Rhizosphere
5.4%4.5%6.2%4.5%7.1%11.6%11.6%7.1%6.2%6.2%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12636J13339_105156513300001154Forest SoilSSPTDEQKLRSDGYREQVAEALYQGIARYAAGSHGIKVASAQR*
JGI12627J18819_1021686013300001867Forest SoilSSPTDEQKLRSDGYREQIAEALYRGIARYAASSGKGVKVASAAK*
Ga0062387_10109719413300004091Bog Forest SoilDEQKLRSDGYREQIAEALYRGIARYAAWARGVKVASAVK*
Ga0062389_10301419613300004092Bog Forest SoilSSPTDEQKLRSDGYREQIAEALYKGIARYAAASRSVKVASAGK*
Ga0062386_10087025223300004152Bog Forest SoilSPTDEQKLRSDGYREQIAEALYKGIARYAASKTVKVASAAK*
Ga0068968_144085423300004474Peatlands SoilFVSSPTDERKLRVDSYREQIAEALFQGIAQYAAASREVKVASAGR*
Ga0072322_122806323300004973Peatlands SoilVSSPTDERKLRVDSYREQIAEALFQGIAQYAAASREVKVASAGR*
Ga0070735_1002516053300005534Surface SoilLRSDGYREQIAEALYRGIARYAANSHGVKIASAGK*
Ga0068857_10094961223300005577Corn RhizosphereQSDGYREKIAEALYRGIARYAASSRGLRLASAAK*
Ga0070761_1077403423300005591SoilEQKLRSDGYREEIAEALYRGIARYAASSHGVKVASAGK*
Ga0070762_1003354113300005602SoilQKLRSDGYREQIAEALYKGIARYAASSHGVKMAAK*
Ga0070763_1028432523300005610SoilDEQKLRSDGYREQIAEALYRGIARYAAASHGVKVASAGK*
Ga0070763_1031455713300005610SoilPTDEQKLRSDGYREEIAEALYKGIARYAATSKNVKIASAGK*
Ga0070764_1065087433300005712SoilDEQKLRSDGYREQIAEALYRGIARYAAGSRGVKVASAGK*
Ga0075287_106308323300005873Rice Paddy SoilDEQKLRTDGYREQIAEALYRGIARYAGSSRAVKVATAAK*
Ga0070766_1042812633300005921SoilKLRSDGYREQIAEALYKGIARYAAASRSVKVASAAK*
Ga0075019_1039747513300006086WatershedsTDEQKLRSDGYREQIAEALYKGIARYAATSHGVKVASAAK*
Ga0075030_10033261143300006162WatershedsDEQKLRSDGYREQIAEALYKGIARYAASSKGVKVASAAK*
Ga0075030_10110189823300006162WatershedsLRSDGYREQIAEALYKGIARYASSSKGVKVASAAK*
Ga0075030_10164774913300006162WatershedsQKLRSDGYREQIAEALYKGIARYASSSKGVKVASAAK*
Ga0073928_1005008333300006893Iron-Sulfur Acid SpringPTDERKLRNDGYREQVAEALYKGIARYAASSHGIKVASARR*
Ga0073928_1011752013300006893Iron-Sulfur Acid SpringPTDERKLRNDGYREQVAEALYKGIARYAASSHGIKVASARH*
Ga0102924_122397513300007982Iron-Sulfur Acid SpringQKLRSDGYREQIAEALYRGIARYAAASRGVKVASVTK*
Ga0099829_1099197913300009038Vadose Zone SoilDEQKLRSDGYREQIAEALYKGIARYAAASRGVKVASVK*
Ga0099830_1130482713300009088Vadose Zone SoilKLRSDGYREQIAEALYKGIARYAAGSRGVKVAAR*
Ga0116128_114142413300009518PeatlandQKLRSDGYREQVAEALYKGIARYAASSHGIKVASARR*
Ga0116225_132625733300009524Peatlands SoilSTDEQKLRSDGYREQIAEALYKGIARYAASSRGVKVASAGK*
Ga0116111_108929513300009616PeatlandKLRSDGYREQIAEALYRGIARYAATSHSVKVASAAK*
Ga0116120_123160923300009641PeatlandKLRSDGYREQIAEALYRGIARYAASSRGVKMASAAK*
Ga0116135_100657353300009665PeatlandRSDGYREQIAEALYKGIARYAVASHGVKMASAAK*
Ga0116215_133055013300009672Peatlands SoilTDEQKLRSYGYREQIAEALYKGIARYAASSKGVKVASAGR*
Ga0116101_101967713300009759PeatlandQKLRSDGYREQIAEALYKGIARYAASSRGVKVASAAK*
Ga0126384_1136894223300010046Tropical Forest SoilTDEQKLRSDGYREQIAEALYRGIARYAASSKGVKMASAAK*
Ga0126379_1274056623300010366Tropical Forest SoilSFVSSPADERHLQSTTYREQIAEALYKGIAHYAAASIHMKLASVR*
Ga0136449_10090023313300010379Peatlands SoilVSFVSSPTDEQKLRSDGYREQVAEALYKGIARYAASSHGINVASARR*
Ga0136449_10346224623300010379Peatlands SoilVSFVSSPTDEQKLRSDGYREQVAEALYKGIARYAASSHGIKVASARR*
Ga0138575_112315013300011081Peatlands SoilEVSFVSSPTDERKLRVDSYREQIAEALFQGIAQYAAASREVKVASAGR*
Ga0137393_1073307313300011271Vadose Zone SoilEQKLRSDGYREQIAEALYKGIARYAAGSRSVKVASVK*
Ga0137384_1096949533300012357Vadose Zone SoilQKLRSDGYREQIAEALYKGIARYAASSHAVKVAAR*
Ga0137398_1066561813300012683Vadose Zone SoilTDEQRLRSDGYREQIAEALYRGIARYAANSRSVKMASARNK*
Ga0137395_1018251213300012917Vadose Zone SoilPTDERKLRNDGYREQIAEALYRGIARYAANSHAVKVASVGK*
Ga0137395_1036776023300012917Vadose Zone SoilRSDGYREQIAEALYKGIARYAAGSRSVKVASAAK*
Ga0137419_1004507933300012925Vadose Zone SoilEQRLRSDGYREQIADALYKGIARYAASSRGVKVASAAK*
Ga0126369_1077414913300012971Tropical Forest SoilQKLRSDGYREQIAEALYRGIARYAAGSKGVKMASAAK*
Ga0181531_1004135213300014169BogDEQKLRSDGYREQIAEALYKGIARYAAGSRGVKMAAR*
Ga0182015_1004794913300014495PalsaPTDEQKLRSDGYREQIAEALYKGIARYAAGSRGVKVASAGK*
Ga0182024_1027345613300014501PermafrostKLRSDGYREQIAEALYKGIARYAATSHGVKVASAAK*
Ga0181516_1023315013300014655BogSSPTDEQKLRSDGYREQIAEALYKGIARYAASSHSVRVASVGK*
Ga0132258_1008193283300015371Arabidopsis RhizosphereTDEQKLRSDGYREQIAEALYRGIARYASNSKGVKMASAAK*
Ga0132256_10217507623300015372Arabidopsis RhizospherePTDEQKLRSDGYREQIAEALYKGIARYAANSRNVKVASARK*
Ga0187818_1000901813300017823Freshwater SedimentDEQKLRSDGYREQVAEALYKGIARYAASSRGIRVVSARR
Ga0187849_126285313300017929PeatlandPTDEQKLRSDGYREQVAEALYKGIARYAASSHGIKVASARR
Ga0187853_1035184323300017940PeatlandGQKLRSDGYREQVAEALYKGIARYAASSHGIKVASARR
Ga0187781_1058656123300017972Tropical PeatlandSSPTDEQKLRSDGYREEIAEALYRGIARYEASTHAVKLASAGK
Ga0187782_1101806323300017975Tropical PeatlandVSSPTDEQKLRSDGYREQIAEAIYKGIARYAADSKNVKVASN
Ga0187782_1144595523300017975Tropical PeatlandTDEQKLRSDGYREEIAEALYHGIARYAAANSKGAKLAAK
Ga0187881_1047416913300018024PeatlandSSPTDEQKLRSDGYREEIAEALYKGIARYAANSRGTKVASAAK
Ga0187869_1002479213300018030PeatlandQKLRSDGYREQIAEALYRGIARYAASSRGVKMASAAK
Ga0187863_1010209213300018034PeatlandKLRSDGYREQIAEALYRGIARYAASSHGVKVASAGK
Ga0187863_1031240513300018034PeatlandTDEQKLRSDGYREQIAEALYRGIARYAASSHGVKVASAWK
Ga0187784_1091543013300018062Tropical PeatlandDEQKLRSDGYREEIAEALYKGIARYAASSKGVKLASAGK
Ga0187772_1129572623300018085Tropical PeatlandEQKLRSDGYREQIAEALYRGMARYAANSHGVKMASAAK
Ga0187769_1008546353300018086Tropical PeatlandPTDEQKLRSDGYREQVAEALYKGIARYAASSRGIRVVSARR
Ga0187769_1037888433300018086Tropical PeatlandEQKLRSDGYREQVAEALYKGIARYAASSRGIKIVSARR
Ga0187771_1162096413300018088Tropical PeatlandKLRSDGYREQIAEALYKGIARYEATAHPVKMASAAR
Ga0210399_1135681813300020581SoilLRSDMYREQIAEALYHGIARYAASDKGAKVASAAK
Ga0210388_1086165313300021181SoilKLRSDGYREQIAEALYKGIARYAASSKGIKVASTGK
Ga0210388_1094043213300021181SoilHRRTKLRSDGYREQIAEALYRGIARYAAASKGVKVAAK
Ga0210385_1033007223300021402SoilQKLRSDGYREQIAEALYRGIARYAAASHGVKVASAGK
Ga0210397_1149096013300021403SoilKLRSDMYREQIAEALYHGIARYAASDKGAKVASAAK
Ga0210383_1128169023300021407SoilSSPTDEQKLRSDGYREQIAEALYKGIARYAAASRAVKVASAGK
Ga0210391_1005247513300021433SoilSSPTDEQKLRSDGYREQIAEALYKGIARYAAASRSVKVASVTK
Ga0210391_1005705013300021433SoilPTDEQKLRSDGYREQIAEALYKGIARYAAGSRGVKVASAGK
Ga0210391_1006589863300021433SoilDEQKRRSDGYREQIAEALYKGIARYAASSRGVKVASAAK
Ga0182009_1082195313300021445SoilKLQSDGYREKIAEALYKGIARYAISSRGVKMAAKQVASRASQ
Ga0224562_100178513300022733SoilKLRSDGYREEIAEALYKGIAHYAANSRGVKVASAAKQ
Ga0208323_104433713300025439PeatlandSPTDEQQLRNDGYREQIAEALYKGIARYAAGSRGVKVASAAK
Ga0208455_106237813300025453PeatlandSPTDGQKLRSDGYREQVAEALYKGIARYAASSHGIKVASARR
Ga0208416_101934013300026004Rice Paddy SoilQKLRTDGYREQIAEALYRGIARYAGSSRAVKVATAAK
Ga0207676_1110157223300026095Switchgrass RhizosphereRSAEYRQQIAEALYKGIARYAATSHRASMASAAPMQ
Ga0209115_109281023300027567Forest SoilPTDEQKLRSDGYREQIAEALYRGIARYAAASKSVKVASAAK
Ga0208044_114980013300027625Peatlands SoilQKLRSDGYREQIAEALYKGIARYAASSRGVKVASAGK
Ga0209139_1031405913300027795Bog Forest SoilSPTDEQKLRSDGYREQIAEALYKGIARYAASSKGEKVASTGK
Ga0209773_1025125433300027829Bog Forest SoilDEQKLRSDGYREQIAEALYKGIARYAASTHSVKMASR
Ga0209580_1064300223300027842Surface SoilKLHSGGYREQIAEALYRGIARYAASSHSVKVASANK
Ga0209068_1063089523300027894WatershedsEQKLRSDGYRERIAEALYKGIARYAVASKGVKVASK
Ga0209415_1011384913300027905Peatlands SoilDEQKLRSDGYREQVAEALYKGIARYAASSHGIKVASARR
Ga0209415_1042215423300027905Peatlands SoilQKLRSDGYREQVAEALYKGIARYAASSHGIKVASARR
Ga0302219_1000786413300028747PalsaSSPTDEQKLRSDGYREQIAEALYKGIARYAAGSRGVKLAAK
Ga0308309_1096182413300028906SoilPTDEQKLRSDGYREEIAEALYKGIARYAATSKNVKIASAGK
Ga0311371_1084100823300029951PalsaVSFVSSPTDEQKLRSVGYREQVAEALYKGIARYAASSHAVKVASAQRRPESATAKQ
Ga0311339_1138234713300029999PalsaKLRSDGYREQIAEALYKGIARYAAASHGVKVASAGN
Ga0311348_1094771113300030019FenTDETKLESPSYRQRIAEALYKGIARYMEESRRVKMASTSAAKSAAR
Ga0302182_1015703823300030054PalsaEQKLRSDGYREQIAEALYKGIARYAAASHGVKVASAGN
Ga0311349_1078682213300030294FenQKLRSDGYREQIAEALYKGIARYAASAGRGVKVASAAK
Ga0311372_1274514623300030520PalsaTDEQKLRSDEYREQIAEALYKGIARYAASSRSVKVASAAK
Ga0311354_1041962013300030618PalsaLRSDGYREQIAEALYKGIARYAAGSRGVKMASAAK
Ga0310039_1036157123300030706Peatlands SoilKLRSDGYREQVAEALYKGIARYAASSHGIKVASARR
Ga0170818_10359185113300031474Forest SoilTDEQKLRSDGYREQIAEALYKGIARYAAGSKGVKVASTGK
Ga0302326_1162819113300031525PalsaRLRSDGYREQVAEALYKGIARYAASFHGIKVTSARP
Ga0318541_1071970023300031545SoilQKLRSDGYREQIAEALYKGIARYASASKGVKVASVR
Ga0310686_11664322513300031708SoilSPTDEQKLRSDGYREQIAEALYKGIARYAAGSRGVKMASAAK
Ga0307478_1148592913300031823Hardwood Forest SoilKLRSDGYRERIAEALYKGIARYAANSRGVKVASAAKR
Ga0318536_1053182523300031893SoilTDEQKLRSDGYREQIAEALYKGIARYASASKGVKVASVR
Ga0310916_1090382213300031942SoilSPADEQKLRSDGYRERIAEALYKGIARYASSKGVKMASAAK
Ga0307479_1057350623300031962Hardwood Forest SoilEQKLRTDGYREQIAEALYRGIARYAASSHSVKVASAGK
Ga0311301_1059647113300032160Peatlands SoilQKLRSDGYREQVAEALYKGIARYAASSHGINVASARR
Ga0311301_1152883023300032160Peatlands SoilVSFVSSPADEQKLRSDGYREQVAEALYKGIARYAASSHGIKVASARR
Ga0335078_1069718013300032805SoilSPADEQKLRSDGYRERIAEALYRGIAHYAVQSKGVKMASAK
Ga0335075_1117803023300032896SoilEQRLRSDGYREQIAEALYKGIARYAASSHPVKVASAGAR
Ga0335077_1154654113300033158SoilEQKLRSDGYREQIAEALYKGIARYAASSKGVKVAAR
Ga0310914_1089942113300033289SoilEQKLRSDGYREQIAEALYKGIARYASASKGVKVASVR


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