Metagenome / Metatranscriptome Family F083702

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F083702
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	52 residues
Representative Sequence	MIIETDASDRGGAETLRRYELNGAYDEMFRTVDHPRKQYRPLHNLLL
Number of Associated Samples	102
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	42.86 %
% of genes near scaffold ends (potentially truncated)	98.21 %
% of genes from short scaffolds (< 2000 bps)	87.50 %
Associated GOLD sequencing projects	95
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.16

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (58.929 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland (15.179 % of family members)
Environment Ontology (ENVO)	Unclassified (33.929 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (52.679 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 34.67% β-sheet: 0.00% Coil/Unstructured: 65.33%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.16
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.16
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF01841	Transglut_core	5.36
PF00378	ECH_1	1.79
PF00664	ABC_membrane	1.79
PF13460	NAD_binding_10	1.79
PF07366	SnoaL	1.79
PF13185	GAF_2	0.89
PF01548	DEDD_Tnp_IS110	0.89
PF04095	NAPRTase	0.89
PF09899	DUF2126	0.89
PF04174	CP_ATPgrasp_1	0.89
PF03861	ANTAR	0.89
PF10067	DUF2306	0.89
PF06347	SH3_4	0.89
PF05694	SBP56	0.89
PF00392	GntR	0.89
PF08379	Bact_transglu_N	0.89
PF00148	Oxidored_nitro	0.89
PF12802	MarR_2	0.89
PF01557	FAA_hydrolase	0.89
PF09957	VapB_antitoxin	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG1305	Transglutaminase-like enzyme, putative cysteine protease	Posttranslational modification, protein turnover, chaperones [O]	0.89
COG1488	Nicotinic acid phosphoribosyltransferase	Coenzyme transport and metabolism [H]	0.89
COG2308	Circularly permuted ATP-grasp protein	General function prediction only [R]	0.89
COG2710	Nitrogenase Mo-Fe protein NifD/coenzyme F430 biosynthesis subunit CfbD	Coenzyme transport and metabolism [H]	0.89
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.89
COG3707	Two-component response regulator, AmiR/NasT family, consists of REC and RNA-binding antiterminator (ANTAR) domains	Transcription [K]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	58.93 %
Unclassified	root	N/A	41.07 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	58.93 %
Unclassified	root	N/A	41.07 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	58.93 %
Unclassified	root	N/A	41.07 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.07 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	24.11 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.79 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.07 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	7.14 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	4.46 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.79 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.07 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	7.14 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.46 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.79 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.07 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4.46 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.46 %
unclassified Terriglobales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales	2.68 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	1.79 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.07 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.46 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	2.68 %
Desulfobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	1.79 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	0.89 %
Verrucomicrobia subdivision 3	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.07 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.46 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	2.68 %
Desulfospira	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfospira	1.79 %
Pedosphaera	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera	0.89 %
Acidobacteriaceae bacterium KBS 83	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.07 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.46 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	2.68 %
Desulfospira joergensenii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfospira → Desulfospira joergensenii	1.79 %
Pedosphaera parvula	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	0.89 %
Acidobacteriaceae bacterium KBS 83	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.07 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.46 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	2.68 %
Desulfospira joergensenii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfospira → Desulfospira joergensenii	1.79 %
Pedosphaera parvula Ellin514	strain	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula → Pedosphaera parvula Ellin514	0.89 %
Acidobacteriaceae bacterium KBS 83	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001100\|JGI12703J13194_104581	Not Available	687	Open in IMG/M
3300002245\|JGIcombinedJ26739_100414537	All Organisms → cellular organisms → Bacteria	1225	Open in IMG/M
3300002245\|JGIcombinedJ26739_100775774	Not Available	838	Open in IMG/M
3300004080\|Ga0062385_10028486	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	2207	Open in IMG/M
3300004092\|Ga0062389_103088892	All Organisms → cellular organisms → Bacteria	623	Open in IMG/M
3300004152\|Ga0062386_100504043	All Organisms → cellular organisms → Bacteria → Acidobacteria	983	Open in IMG/M
3300004152\|Ga0062386_100714588	All Organisms → cellular organisms → Bacteria	823	Open in IMG/M
3300004635\|Ga0062388_102009728	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300005542\|Ga0070732_10775939	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300005602\|Ga0070762_10027933	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2996	Open in IMG/M
3300005602\|Ga0070762_10826543	All Organisms → cellular organisms → Bacteria	628	Open in IMG/M
3300007788\|Ga0099795_10556185	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300009522\|Ga0116218_1027277	All Organisms → cellular organisms → Bacteria → Acidobacteria	2556	Open in IMG/M
3300009621\|Ga0116116_1125854	All Organisms → cellular organisms → Bacteria → Acidobacteria	685	Open in IMG/M
3300009624\|Ga0116105_1004173	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3008	Open in IMG/M
3300009628\|Ga0116125_1206751	Not Available	560	Open in IMG/M
3300009633\|Ga0116129_1220178	Not Available	538	Open in IMG/M
3300009637\|Ga0116118_1030168	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfospira → Desulfospira joergensenii	1992	Open in IMG/M
3300009641\|Ga0116120_1178923	Not Available	676	Open in IMG/M
3300009762\|Ga0116130_1106734	Not Available	880	Open in IMG/M
3300009764\|Ga0116134_1027017	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2296	Open in IMG/M
3300009764\|Ga0116134_1038864	All Organisms → cellular organisms → Bacteria → Acidobacteria	1855	Open in IMG/M
3300010341\|Ga0074045_10016516	All Organisms → cellular organisms → Bacteria	5925	Open in IMG/M
3300010859\|Ga0126352_1307802	All Organisms → cellular organisms → Bacteria	658	Open in IMG/M
3300012925\|Ga0137419_10570059	Not Available	906	Open in IMG/M
3300012927\|Ga0137416_10237926	All Organisms → cellular organisms → Bacteria	1481	Open in IMG/M
3300012985\|Ga0164308_11815536	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300014159\|Ga0181530_10152823	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	1314	Open in IMG/M
3300014165\|Ga0181523_10316844	All Organisms → cellular organisms → Bacteria → Acidobacteria	878	Open in IMG/M
3300014200\|Ga0181526_10994606	Not Available	527	Open in IMG/M
3300014489\|Ga0182018_10472113	Not Available	665	Open in IMG/M
3300014501\|Ga0182024_11338791	Not Available	828	Open in IMG/M
3300015241\|Ga0137418_10184459	All Organisms → cellular organisms → Bacteria → Acidobacteria	1814	Open in IMG/M
3300017937\|Ga0187809_10069497	Not Available	1152	Open in IMG/M
3300017938\|Ga0187854_10323937	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	655	Open in IMG/M
3300017955\|Ga0187817_11021867	Not Available	530	Open in IMG/M
3300018018\|Ga0187886_1160205	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	889	Open in IMG/M
3300018020\|Ga0187861_10453880	Not Available	533	Open in IMG/M
3300018022\|Ga0187864_10039528	Not Available	2723	Open in IMG/M
3300018022\|Ga0187864_10289611	Not Available	735	Open in IMG/M
3300018023\|Ga0187889_10242752	Not Available	813	Open in IMG/M
3300018024\|Ga0187881_10446242	Not Available	529	Open in IMG/M
3300018025\|Ga0187885_10090269	All Organisms → cellular organisms → Bacteria → Acidobacteria	1501	Open in IMG/M
3300018026\|Ga0187857_10093761	All Organisms → cellular organisms → Bacteria → Acidobacteria	1468	Open in IMG/M
3300018026\|Ga0187857_10295918	Not Available	739	Open in IMG/M
3300018030\|Ga0187869_10376352	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	678	Open in IMG/M
3300018033\|Ga0187867_10380166	Not Available	784	Open in IMG/M
3300018035\|Ga0187875_10138614	Not Available	1365	Open in IMG/M
3300018038\|Ga0187855_10781457	All Organisms → cellular organisms → Bacteria → Acidobacteria	557	Open in IMG/M
3300018040\|Ga0187862_10053527	All Organisms → cellular organisms → Bacteria	2923	Open in IMG/M
3300018044\|Ga0187890_10005820	All Organisms → cellular organisms → Bacteria	8152	Open in IMG/M
3300018044\|Ga0187890_10032839	All Organisms → cellular organisms → Bacteria → Acidobacteria	3147	Open in IMG/M
3300019786\|Ga0182025_1212286	All Organisms → cellular organisms → Bacteria	2253	Open in IMG/M
3300020021\|Ga0193726_1106680	Not Available	1263	Open in IMG/M
3300020580\|Ga0210403_10168663	All Organisms → cellular organisms → Bacteria → Acidobacteria	1793	Open in IMG/M
3300020582\|Ga0210395_10784767	Not Available	711	Open in IMG/M
3300021178\|Ga0210408_10859333	Not Available	708	Open in IMG/M
3300021180\|Ga0210396_10769105	Not Available	828	Open in IMG/M
3300021181\|Ga0210388_10868461	Not Available	779	Open in IMG/M
3300021404\|Ga0210389_10084264	All Organisms → cellular organisms → Bacteria → Acidobacteria	2442	Open in IMG/M
3300021407\|Ga0210383_10897852	Not Available	755	Open in IMG/M
3300021420\|Ga0210394_10364064	All Organisms → cellular organisms → Bacteria → Acidobacteria	1271	Open in IMG/M
3300021432\|Ga0210384_10721084	All Organisms → cellular organisms → Bacteria	892	Open in IMG/M
3300021433\|Ga0210391_10130288	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1980	Open in IMG/M
3300022840\|Ga0224549_1021383	All Organisms → cellular organisms → Bacteria	892	Open in IMG/M
3300023090\|Ga0224558_1184028	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	642	Open in IMG/M
3300023250\|Ga0224544_1063056	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300023255\|Ga0224547_1033127	All Organisms → cellular organisms → Bacteria	666	Open in IMG/M
3300024225\|Ga0224572_1084312	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300025414\|Ga0208935_1009821	Not Available	1316	Open in IMG/M
3300025928\|Ga0207700_10121535	All Organisms → cellular organisms → Bacteria	2118	Open in IMG/M
3300026294\|Ga0209839_10083979	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1103	Open in IMG/M
3300027562\|Ga0209735_1063767	Not Available	794	Open in IMG/M
3300027587\|Ga0209220_1045340	All Organisms → cellular organisms → Bacteria	1175	Open in IMG/M
3300027591\|Ga0209733_1043923	All Organisms → cellular organisms → Bacteria	1190	Open in IMG/M
3300027648\|Ga0209420_1130211	All Organisms → cellular organisms → Bacteria	699	Open in IMG/M
3300027676\|Ga0209333_1150240	All Organisms → cellular organisms → Bacteria	626	Open in IMG/M
3300027745\|Ga0209908_10108861	Not Available	693	Open in IMG/M
3300027842\|Ga0209580_10430579	Not Available	658	Open in IMG/M
3300027853\|Ga0209274_10214413	Not Available	981	Open in IMG/M
3300027853\|Ga0209274_10583358	Not Available	579	Open in IMG/M
3300027884\|Ga0209275_10628587	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300027905\|Ga0209415_10805269	Not Available	654	Open in IMG/M
3300028047\|Ga0209526_10602753	Not Available	703	Open in IMG/M
3300028560\|Ga0302144_10194100	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300028746\|Ga0302233_10127579	All Organisms → cellular organisms → Bacteria	992	Open in IMG/M
3300028747\|Ga0302219_10226901	Not Available	722	Open in IMG/M
3300028748\|Ga0302156_10251253	Not Available	809	Open in IMG/M
3300028775\|Ga0302231_10445028	Not Available	547	Open in IMG/M
3300028863\|Ga0302218_10038939	Not Available	1499	Open in IMG/M
3300028863\|Ga0302218_10176416	Not Available	680	Open in IMG/M
3300028871\|Ga0302230_10394368	All Organisms → cellular organisms → Bacteria	539	Open in IMG/M
3300028882\|Ga0302154_10491441	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300029917\|Ga0311326_10467496	All Organisms → cellular organisms → Bacteria	619	Open in IMG/M
3300029986\|Ga0302188_10441158	Not Available	531	Open in IMG/M
3300030007\|Ga0311338_11862773	All Organisms → cellular organisms → Bacteria	539	Open in IMG/M
3300030045\|Ga0302282_1283151	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula → Pedosphaera parvula Ellin514	604	Open in IMG/M
3300030053\|Ga0302177_10240881	All Organisms → cellular organisms → Bacteria	981	Open in IMG/M
3300030580\|Ga0311355_10426163	Not Available	1291	Open in IMG/M
3300030617\|Ga0311356_10590795	Not Available	1075	Open in IMG/M
3300030707\|Ga0310038_10144470	Not Available	1190	Open in IMG/M
3300030741\|Ga0265459_10444636	All Organisms → cellular organisms → Bacteria	1094	Open in IMG/M
3300031090\|Ga0265760_10046852	All Organisms → cellular organisms → Bacteria	1298	Open in IMG/M
3300031090\|Ga0265760_10195285	Not Available	681	Open in IMG/M
3300031122\|Ga0170822_15675739	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	507	Open in IMG/M
3300031446\|Ga0170820_17060738	Not Available	679	Open in IMG/M
3300031525\|Ga0302326_11494194	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	905	Open in IMG/M
3300031754\|Ga0307475_10248470	All Organisms → cellular organisms → Bacteria	1425	Open in IMG/M
3300031837\|Ga0302315_10132576	All Organisms → cellular organisms → Bacteria → Acidobacteria	1572	Open in IMG/M
3300032160\|Ga0311301_10294204	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfospira → Desulfospira joergensenii	2610	Open in IMG/M
3300033547\|Ga0316212_1034170	Not Available	716	Open in IMG/M
3300033888\|Ga0334792_041529	All Organisms → cellular organisms → Bacteria	1478	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.21%
Host-Associated	Host-Associated	1.79%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	65.18%
Aquatic	Environmental → Aquatic	33.04%
Plants	Host-Associated → Plants	1.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	44.64%
Freshwater	Environmental → Aquatic → Freshwater	33.04%
Peat	Environmental → Terrestrial → Peat	20.54%
Roots	Host-Associated → Plants → Roots	0.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.89%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	33.04%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	25.89%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	20.54%
Loam	Environmental → Terrestrial → Soil → Loam	13.39%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.36%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	22.32%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	20.54%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.39%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.50%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.50%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	8.93%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	4.46%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.79%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.89%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	15.18%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	10.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.82%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	8.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	8.04%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	4.46%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	4.46%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	4.46%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	4.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.57%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.57%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.57%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	2.68%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.79%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.79%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.79%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	1.79%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.89%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.89%
Thawing Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Thawing Permafrost	0.89%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.89%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.89%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.89%
Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Roots	0.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.89%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001100	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M1	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009621	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_150	Environmental	Open in IMG/M
3300009624	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10	Environmental	Open in IMG/M
3300009628	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10	Environmental	Open in IMG/M
3300009633	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10	Environmental	Open in IMG/M
3300009637	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_40	Environmental	Open in IMG/M
3300009641	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_150	Environmental	Open in IMG/M
3300009762	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_40	Environmental	Open in IMG/M
3300009764	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_40	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010859	Boreal forest soil eukaryotic communities from Alaska, USA - C5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017938	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300018018	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_150	Environmental	Open in IMG/M
3300018020	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_100	Environmental	Open in IMG/M
3300018022	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40	Environmental	Open in IMG/M
3300018023	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_100	Environmental	Open in IMG/M
3300018024	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_100	Environmental	Open in IMG/M
3300018025	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_100	Environmental	Open in IMG/M
3300018026	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_100	Environmental	Open in IMG/M
3300018030	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100	Environmental	Open in IMG/M
3300018033	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10	Environmental	Open in IMG/M
3300018035	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300019786	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300020021	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300022840	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 1-5	Environmental	Open in IMG/M
3300023090	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24	Environmental	Open in IMG/M
3300023250	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P1 10-14	Environmental	Open in IMG/M
3300023255	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P2 10-14	Environmental	Open in IMG/M
3300024225	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU5	Host-Associated	Open in IMG/M
3300025414	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10 (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026294	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050 (SPAdes)	Environmental	Open in IMG/M
3300027562	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027587	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3 (SPAdes)	Environmental	Open in IMG/M
3300027591	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes)	Environmental	Open in IMG/M
3300027648	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027676	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)	Environmental	Open in IMG/M
3300027745	Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 812P2M	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028560	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E2_2	Environmental	Open in IMG/M
3300028746	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_1	Environmental	Open in IMG/M
3300028747	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_2	Environmental	Open in IMG/M
3300028748	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_2	Environmental	Open in IMG/M
3300028775	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_2	Environmental	Open in IMG/M
3300028863	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_1	Environmental	Open in IMG/M
3300028871	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_1	Environmental	Open in IMG/M
3300028882	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N2_3	Environmental	Open in IMG/M
3300029917	I_Bog_E1 coassembly	Environmental	Open in IMG/M
3300029986	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E2_1	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030045	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E1_3	Environmental	Open in IMG/M
3300030053	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030617	II_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030707	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)	Environmental	Open in IMG/M
3300030741	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ANR Co-assembly	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031122	Oak Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031837	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_1	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300033547	Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE1	Host-Associated	Open in IMG/M
3300033888	Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-3-X1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12703J13194_1045811	3300001100	Forest Soil	MIIETDTSDRGGAEALHRYELNGAYDEMFISVDHP
JGIcombinedJ26739_1004145371	3300002245	Forest Soil	MIIEADTSDRGSAEIVQPYELSGAYDEMFSAVNHPRKQYRPLHNLLQNL
JGIcombinedJ26739_1007757742	3300002245	Forest Soil	MIIETDASDQSGAEALHRYEVNGAYDEMFSAVDHPR
Ga0062385_100284863	3300004080	Bog Forest Soil	MIVEAHTSDPSSVTQALHHYELNGAYDEMFVSEDHPRRQYRPLHNLLLHLGPDELR
Ga0062389_1030888921	3300004092	Bog Forest Soil	MIVEAHTSDRVGVAEALHRYELNGAYDEMFVAEGHPRRQYRPLHNLLLNLGPDEL
Ga0062386_1005040432	3300004152	Bog Forest Soil	MITDTVASDRGGAETLRRYELNGAYDEMFRAVEHPRKQYR
Ga0062386_1007145882	3300004152	Bog Forest Soil	MIIDTDASDRGGAETLRRYELNGAYDEMFRAVEHPRKQYRQL
Ga0062388_1020097281	3300004635	Bog Forest Soil	MIVEAHTSDRVGVAEALHRYELNGAYDEMFVAEGHPRRQYRPLHNL
Ga0070732_107759391	3300005542	Surface Soil	MITETDSGDRGRVKALQRYEFNGAYDEMFSALDHPRKQYRPLHNLLLNLSP
Ga0070762_100279335	3300005602	Soil	MRYPCGDRAPTMIIETSAASAGGAEGLRHYFLNGAYDEMFRSLDHPRKQYRPLHNLLLNLGPDELRRS
Ga0070762_108265432	3300005602	Soil	MIIEMDASDRSGAEALHRYELNGAYDEMYSAVDHPRRQYRPLHNLLLNLGPDQLRRSKYEADQSFFNQ
Ga0099795_105561851	3300007788	Vadose Zone Soil	MIIEMETSERGGAEALHRYELNGAYDEMYSAVDHPRKQYRPLHNLLLNL
Ga0116218_10272772	3300009522	Peatlands Soil	MRYSSGETCAAIMIIDTDASDRGGAETLRQYELNGAYDEMFGAVEHPRKQYRQLYNLLLSLGPGELRR
Ga0116116_11258541	3300009621	Peatland	MITDTDASDRGGAETLRRYELNGAYDEMFRAVEHPRKQYRQLYNLLLSL
Ga0116105_10041734	3300009624	Peatland	MRYSEGNAVIMIIETDTSDRGGAESLHGYELDGAYDEMFRAVDHPRKQYRQ
Ga0116125_12067511	3300009628	Peatland	MITDTDASDRGGAETLRRYELNGAYDEMFRAVEHPRKQYRQLYNLLLSLGPG
Ga0116129_12201781	3300009633	Peatland	LPILNSPPIRYSGEEYGAAIVITETDPSDRSGAKALHWYELNGAYDEMFSAADQPRKQYRPLHNLLLNLGPDE
Ga0116118_10301682	3300009637	Peatland	MIIDTDASNRGGAEILRQYELNGAYDEMFRAVEHPRKQYRQLYNLLLSL
Ga0116120_11789231	3300009641	Peatland	MRYSSGETSAAIMIIDTDASDRGGAETLRQYELNGAYDEMFRAVEHPRKQYRQLYNLLLSLGPG
Ga0116130_11067342	3300009762	Peatland	MRYSSGETSAAIMIIDTDASNRGGAETLRQYELNGAYDEMFGAVEHPRKQYRQLYNLLLSLGPGEL
Ga0116134_10270175	3300009764	Peatland	MTIDTDASDRGGAETLRRYELNGAYDEMFRAVEHPRKQYRQLY
Ga0116134_10388643	3300009764	Peatland	MITDTDASDRGGAETLRRYELNGAYDEMFRAVEHPRKQYRQLY
Ga0074045_100165161	3300010341	Bog Forest Soil	MRYSSGETSAAIMIIDTDASDRGGAETLRQYELNGAYDEMFRAVEHPRKQYRQLYNLLLS
Ga0126352_13078022	3300010859	Boreal Forest Soil	MIIETDATDQGGADALQRYEVNGAYDEMFSTVDHPRRQYR
Ga0137419_105700592	3300012925	Vadose Zone Soil	MIIEMETSERGGAEALHRYELNGAYDEMYSAADHPRKQYRPLHNLLLNLGADQLRRSKHE
Ga0137416_102379261	3300012927	Vadose Zone Soil	MIIEMETSERGGAEALHRYELNGAYDEMYSAVDHPRKQYRPLQNLLLNLGSDQLRRSKHEADQ
Ga0164308_118155361	3300012985	Soil	MITETDTSNPSGAEALHRYELNGAYDEMFSAVDHPRKQYRPLHNLLLNLGPNDL
Ga0181530_101528233	3300014159	Bog	MIIGTDASDRGGAETLRLYELNGAYDEMFRAVEHPRKQYRQLYNLLLSLITAGKCAAS
Ga0181523_103168442	3300014165	Bog	MITDTDASDRGGAETLRRYELNGAYDEMFRAVEHPRKQ
Ga0181526_109946061	3300014200	Bog	MRYSEGNAVIMIIETDTSDRGGAESLHGYELDGAYDEMFRAVDHPRKQYRQLYNLL
Ga0182018_104721131	3300014489	Palsa	MIIEMETTDRSGAEALHRYELNGAYDEMFSAVDHPRRQY
Ga0182024_113387911	3300014501	Permafrost	MITDTDASDRGGTETLRRYELNGAYDEMFRAVEHPRKQYRQLYNLLLSLGPGEL
Ga0137418_101844591	3300015241	Vadose Zone Soil	MIIEMETSERGGAEALHRYELNGAYDEMYSAADHPRKQYRPLHHLLLNLGADQLRRSKHE
Ga0187809_100694971	3300017937	Freshwater Sediment	MIINADVSDRGGTETLRRYELNGAYDEMFRAVEHPRKQYRQLYSLLLSLGPDELR
Ga0187854_103239371	3300017938	Peatland	MIIGTDASDRGGAETLRLYELNGAYDEMFRAVEHPRKQYRQLYNLLLS
Ga0187817_110218671	3300017955	Freshwater Sediment	MIINADVSDRGGTETLRRYELNGAYDEMFRAVEHPRKQYRQLYSL
Ga0187886_11602051	3300018018	Peatland	MIIETDASDRGGAETLHRYELDGAYDEMFRTVDHPRKQYRLLYNLLLSLGPGELRRSKHE
Ga0187861_104538803	3300018020	Peatland	MIIGTDASDRGGAETLRLYELNGAYDEMFRAVEHPRKQYRQLYNLLLSL
Ga0187864_100395284	3300018022	Peatland	MRYSSGETSAAIMIIDTDASDRDGAETLRQYELNGAYDEMFRAVEHPRKQYRQLYNLLLS
Ga0187864_102896111	3300018022	Peatland	MRYPGGGTCAAIMITDTDASDRGGAETLRRYELNDAYDEMFRAVEHPRKQYRQLYNLLLSLGPGELRRSKHEADQ
Ga0187889_102427521	3300018023	Peatland	MRYSSGETSAAIMIIDTDASNRGGAEILRQYELNGAYDEMFRAVEHPRKQYRQLYNLLLSLGPG
Ga0187881_104462421	3300018024	Peatland	MIIETDASDRGGAETLHRYELDGAYDEMFRTVDHPRKQYRL
Ga0187885_100902694	3300018025	Peatland	MHYAGGGTSTATMILETDASDPGGAETLRRYELDGAYDEMFRAVDHPRKQYRLLYNLLLSLGPGELRRSKH
Ga0187857_100937614	3300018026	Peatland	MHYAGGGTSTATMILETDASDPGGAETLRRYELDGAYDEMFRAVDHPRKQYRLLYNLLLSLGPGELRRSKHE
Ga0187857_102959181	3300018026	Peatland	MIIDTDASDRGGAETLRQYELNGAYDEMFRAVEHPRKQYRQLYNLLLSL
Ga0187869_103763521	3300018030	Peatland	MIIGTDASDRGGAETLRLYELNGAYDEMFRAVEHPRKQYRQLYNLLL
Ga0187867_103801662	3300018033	Peatland	MLAGIGGASMIIETDTSDRSGADALHRYELNAAYDEMFSAVDHPRRQYR
Ga0187875_101386142	3300018035	Peatland	MIIETDASDRGGAEALRRYELNGAYDEMFRAVEHPRK
Ga0187855_107814572	3300018038	Peatland	MLAEVTRSYMIIEADISGPGSAAMVPPYELNGAYDEMFSSLDHPRKQYRPL
Ga0187862_100535275	3300018040	Peatland	MIIGTDASDRGGAETLRLYELNGAYDEMFRAVEHPRKQYRQLYNLLLSLGPG
Ga0187890_100058207	3300018044	Peatland	MRYSGGETSAAIMILETDGSDRGGAETLHRYELDGAYDEMFRAVDHPRKQYRLLYNLLLSLGPGELR
Ga0187890_100328395	3300018044	Peatland	MIIETDASDRGGAETLHRYELDGAYDEMFRTVDHPRKQYRLLYNLLLSLGPGELRRSKHEAD
Ga0182025_12122862	3300019786	Permafrost	MIIETDRSDRGGAEALHRYELDGAYDEMFSAVDHPRKQYRPLHNLLLHLGRDELERSKH
Ga0193726_11066802	3300020021	Soil	MILETDASDRGGAEILREYELDGAYDEMFRAADHPRKQ
Ga0210403_101686631	3300020580	Soil	MITETDISDRSGGNALRRYEFNGAYDEMFSAVDRPRKQYRPLHNLLLNLGPD
Ga0210395_107847671	3300020582	Soil	MITETDMSDRSGGNALRRYEFNGAYDEMFSAVDHPRKQ
Ga0210408_108593331	3300021178	Soil	MIIETDASDRGGAETLRRYELDGAYDEMFRAVDHPR
Ga0210396_107691051	3300021180	Soil	MIIETSAASAGGAEGLRHYFLNGAYDEMFRSLDHPRKQ
Ga0210388_108684611	3300021181	Soil	MITDTHASDRGGAETLRRYELNGAYDEMFRTLEHPRKQYRQLYNLLLSLGPGELRRSK
Ga0210389_100842641	3300021404	Soil	MIIETSAASAGGAEGLRHYFLNGAYDEMFRSLDHPRKQYRPLHNLLLNLGPDELR
Ga0210383_108978523	3300021407	Soil	MIIETDTSDRGGAETLHRYELDGAYDEMFRAVDHPRKQYRQLYNLLLSLSS
Ga0210394_103640641	3300021420	Soil	MIINADASDRGGAETLRRYELNGAYDEMFRAVEHPRKQYRQLYNLL
Ga0210384_107210841	3300021432	Soil	MLAWVGGVSMITETDRTDRSGAEALHRYELNGAYDEMFSAVDHPRKQ
Ga0210391_101302881	3300021433	Soil	MIINEDASHRGGAETLRRYELNGSYDEMFRAVEHPRKQYRQL
Ga0224549_10213832	3300022840	Soil	MIIETDTSDQGGAAAFHRYEFNGAYDEMFLSADHPRK
Ga0224558_11840281	3300023090	Soil	MRYSSGETSAAIMIIDTDASDRGGAGTLRQYELNGAYDEMFRAVEHPRKQYRQLYNLLLSLGPGELR
Ga0224544_10630561	3300023250	Soil	MIIEMDASDRSGAQALRRYELNGAYDEMYSAVDHPRRQ
Ga0224547_10331272	3300023255	Soil	MRYAGGEKGAVTMIIETDASDRGGAETLHRYELNGAYDEMFRAVEHPRKQYRPLYNLLLSLGPDELRRSKH
Ga0224572_10843121	3300024225	Rhizosphere	MLAGIGGVPMITETDTSDRSGAETLHRYELNGAYDEMFSAVDHPRTQYRPLHNLLLNLGQDELQ
Ga0208935_10098211	3300025414	Peatland	MIIETDTSDRGGAESLHGYELDGAYDEMFRAVDHPRKQYRQLYN
Ga0207700_101215351	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MITETDPGDRGRVKALQRYEFNGAYDEMFSALDHPRKQYRPL
Ga0209839_100839791	3300026294	Soil	MITDTDASDRGGAETLRRYELNGAYDEMFRAVENPRKQYRQLYNLLLSL
Ga0209735_10637672	3300027562	Forest Soil	MITEADTSERGGAEALQRYELNGAYDEMFSALDHPRKQYRPLHNLLLNLGPDELRRSKHEADQ
Ga0209220_10453402	3300027587	Forest Soil	MIVETDTPHRGGAEALQRYELNGAYDEMFSAVDHPRKQYRPLHNLLLNL
Ga0209733_10439231	3300027591	Forest Soil	MIIETDATDQGGADALHRYEVNGAYDEMFSTVDHPRRQYRPLHNLLLNLGPGEMRRSKNE
Ga0209420_11302111	3300027648	Forest Soil	MIIEADTSDRGSAEIVQPYELSGAYDEMFSAVNHPRK
Ga0209333_11502402	3300027676	Forest Soil	MIIEMDTSERGGAEALHRYELNGAYDEMYSAVDHPRKQYRPLHNLLLNLGADQLRRSKHEADQSFFN
Ga0209908_101088612	3300027745	Thawing Permafrost	MIIETDASDRGGAETLRRYELNGAYDEMFRTVDHPRKQYRPLHNLLL
Ga0209580_104305791	3300027842	Surface Soil	MLAWVGGASMITETDTTDRSGAEALHRYELNGAYDEMFSAVDHPRKQYRP
Ga0209274_102144132	3300027853	Soil	VITETDPSDRSGAKALHWYELNGAYDEMFSAVDHPRKQYRPLHNLLLNLGSDELRRSKSEAD
Ga0209274_105833581	3300027853	Soil	MIIEADTSDRGSAEIVQPYELSGAYDEMFSAVDHPRKQYRPLHNLLQNLGPD
Ga0209275_106285871	3300027884	Soil	MIIEMDASDRSGAEALHRYELNGAYDEMYSAVDHPRRQYRPLHNLLLNLGPDQLRRSKYE
Ga0209415_108052691	3300027905	Peatlands Soil	MIIDTDASDHGGAETLRQYELNGAYDEMFRAVEHPRKQY
Ga0209526_106027532	3300028047	Forest Soil	MIIEMETSERGGAEALHRYELNGAYDEMYSAVDHP
Ga0302144_101941001	3300028560	Bog	MIIEMDTSDHSGAEALHRYELNGAYDEMYSAVDHPRKQYRPLHNLLLNLGPDELRRSKHEAD
Ga0302233_101275792	3300028746	Palsa	MIIEMDTSERGGAEALHRYELNGAYDEMYSAVDHPRKQYRPLHNLL
Ga0302219_102269011	3300028747	Palsa	MIIEADISDRSGAEALHRYELNGAYDEMFSAVDHPRKQYRPLHNLLLNLGPDELRRSKHEADQ
Ga0302156_102512532	3300028748	Bog	MIIEMDTSERGGAEALHRYELNGAYDEMYSSVDHPRKQYRPLHNLLLNL
Ga0302231_104450281	3300028775	Palsa	MILETDASDRGGAEILRGYELNGAYDEMFRAVDHPRKQY
Ga0302218_100389392	3300028863	Palsa	VITETDPSDRSGAKALHWYELKGAYDEMFSAVDQPRKQYRLLHNLLLNLGPDELR
Ga0302218_101764162	3300028863	Palsa	MIIEADISDRSGAEALHRYELNGAYDEMFSAVDHPRKQYRPLHNLLLNLGPD
Ga0302230_103943682	3300028871	Palsa	MIIEMDTSERGGAEALHRYELNGAYDEMYSAVDHPRKQYRPLHNLLLNLG
Ga0302154_104914411	3300028882	Bog	MIIEMDTSERGGAEALHRYELNGAYDEMYSSVDHPRKQYRPLHNLLLNLGADQLRR
Ga0311326_104674962	3300029917	Bog	MIIEMDTSERGGAEALHRYELNGAYDEMYSSVDHPRKQYRPLHN
Ga0302188_104411581	3300029986	Bog	MLAGETSAAIMIIDTDASDRGGAETLRRYELDGAYDEMFRAVEHPRKQYRQLYNLLLSLG
Ga0311338_118627732	3300030007	Palsa	MIIETDTSDQGGAAAFHRYEFNGAYDEMFLAADHP
Ga0302282_12831512	3300030045	Fen	MLAGETSAAIMIIDTDASDRGGAETLRRYELNGAYDEMFRAVDHPRKQYRQLYNLLLSL
Ga0302177_102408811	3300030053	Palsa	MIIEMDTSDRSGAEALHRYELNGAYDEMYSAVDHPRKQYRPLHNLLLNLGPDELRRSKHEAD
Ga0311355_104261632	3300030580	Palsa	MILETDASDRGGAEILRGYELNGAYDEMFRAVDHPRKQYRLLHNLLLSLGPGQ
Ga0311356_105907951	3300030617	Palsa	VITETDPSDRSGAKALHWYELKGAYDEMFSAVDQPRKQYRLLHNLLL
Ga0310038_101444701	3300030707	Peatlands Soil	MIIDTDASDHGGAETLRQYELNGAYDEMFRAVEHPRKQYRQLYNLL
Ga0265459_104446361	3300030741	Soil	MRYSGEACGVLMITETEMSDRSGVKALHRYEFNGAYDEMFSAADQPRKQYRPLHNLLLNLGPDELRRSKNE
Ga0265760_100468521	3300031090	Soil	MRYSGGESGPANMIIETDTSDRGGAEALHRYELNGAYDEMFSSQQHPRKQYRPLHNLLLNLGPDELRRSKHEAD
Ga0265760_101952851	3300031090	Soil	MITDTHASDRGGAETLRRYELNGAYDEMFRTLEHPRKQYRQLYNLLLSL
Ga0170822_156757392	3300031122	Forest Soil	MIIDTDASDRGGAETLRRYELKSAYDEMFRAVGHPRKQYRELY
Ga0170820_170607381	3300031446	Forest Soil	MSINADAFDRGGAETLRGYELNGAYDEMFRTVEHPRKQYR
Ga0302326_114941941	3300031525	Palsa	MITDTDASDRGGAETLRRYELNGAYDEMFRAVEHPRKQYRQLYNLLLS
Ga0307475_102484703	3300031754	Hardwood Forest Soil	MITEADTSERGGAEALQRYELNGAYDEMFSAVDHPRRQYRPLHNLLLNLGPDELRR
Ga0302315_101325761	3300031837	Palsa	MIIEMDTSERGGAEALHRYELNGAYDEMYSAVDHPRKQYRPLHNLLL
Ga0311301_102942041	3300032160	Peatlands Soil	MRYSSGETSAAIMIIDTDASDHGGAETLRKYELNGAYDEMFRAVEHPRKQYRQLYNLLLSLGPGELRRS
Ga0316212_10341701	3300033547	Roots	MIIETDASDRGGAETLHQYELDGAYDEMFRAVDHPRKQYRQ
Ga0334792_041529_2_169	3300033888	Soil	MITETDPSDRSGAKALQRYDFDGAYDEMFSALDHPRKQYRPLHNLLLNLGPDELLR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F083702

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences