Metagenome / Metatranscriptome Family F083607

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F083607
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	78 residues
Representative Sequence	MNTKRRVTQTFEAKLVASRGRERFATGELLMLVDSPESPESSRFMRINGLRPSRGVECQYIIESSELNEKTEMAR
Number of Associated Samples	88
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	73.21 %
% of genes near scaffold ends (potentially truncated)	21.43 %
% of genes from short scaffolds (< 2000 bps)	76.79 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.70

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (69.643 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil (14.286 % of family members)
Environment Ontology (ENVO)	Unclassified (33.036 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (49.107 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 6.80% β-sheet: 31.07% Coil/Unstructured: 62.14%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.70
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.70
Powered by PDBe Molstar

SCOP family	SCOP domain	Representative PDB	TM-score
b.34.11.0: Prokaryotic SH3-related domain	d2hbwa1	2hbw	0.76
b.34.11.0: Prokaryotic SH3-related domain	d2hbwa1	2hbw	0.76
b.34.2.1: SH3-domain	d1bb9a_	1bb9	0.68
b.34.2.1: SH3-domain	d1bb9a_	1bb9	0.68
b.34.2.1: SH3-domain	d1i1ja_	1i1j	0.65
b.34.2.1: SH3-domain	d1k9ab1	1k9a	0.65
b.34.2.1: SH3-domain	d1i1ja_	1i1j	0.65
b.34.2.1: SH3-domain	d1k9ab1	1k9a	0.65
b.34.2.1: SH3-domain	d1gcqc1	1gcq	0.64
b.34.2.1: SH3-domain	d1gcqc1	1gcq	0.64

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF00076	RRM_1	13.39
PF12704	MacB_PCD	2.68
PF15919	HicB_lk_antitox	1.79
PF13180	PDZ_2	1.79
PF01740	STAS	1.79
PF00144	Beta-lactamase	1.79
PF04616	Glyco_hydro_43	1.79
PF02662	FlpD	1.79
PF02146	SIR2	1.79
PF16901	DAO_C	0.89
PF00926	DHBP_synthase	0.89
PF03772	Competence	0.89
PF02518	HATPase_c	0.89
PF02082	Rrf2	0.89
PF12840	HTH_20	0.89
PF13374	TPR_10	0.89
PF00291	PALP	0.89
PF00920	ILVD_EDD	0.89
PF05025	RbsD_FucU	0.89
PF03450	CO_deh_flav_C	0.89
PF02465	FliD_N	0.89
PF01396	zf-C4_Topoisom	0.89
PF00482	T2SSF	0.89
PF13460	NAD_binding_10	0.89
PF00355	Rieske	0.89
PF02826	2-Hacid_dh_C	0.89
PF13545	HTH_Crp_2	0.89
PF00155	Aminotran_1_2	0.89
PF13439	Glyco_transf_4	0.89
PF07195	FliD_C	0.89
PF03551	PadR	0.89
PF00581	Rhodanese	0.89
PF07635	PSCyt1	0.89
PF13561	adh_short_C2	0.89
PF13191	AAA_16	0.89
PF00106	adh_short	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG0129	Dihydroxyacid dehydratase/phosphogluconate dehydratase	Carbohydrate transport and metabolism [G]	1.79
COG0846	NAD-dependent protein deacetylase, SIR2 family	Posttranslational modification, protein turnover, chaperones [O]	1.79
COG1345	Flagellar capping protein FliD	Cell motility [N]	1.79
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	1.79
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	1.79
COG2367	Beta-lactamase class A	Defense mechanisms [V]	1.79
COG1908	Coenzyme F420-reducing hydrogenase, delta subunit	Energy production and conversion [C]	1.79
COG4154	L-fucose mutarotase/ribose pyranase, RbsD/FucU family	Carbohydrate transport and metabolism [G]	0.89
COG0108	3,4-dihydroxy-2-butanone 4-phosphate synthase	Coenzyme transport and metabolism [H]	0.89
COG2524	Predicted transcriptional regulator, contains C-terminal CBS domains	Transcription [K]	0.89
COG2378	Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains	Transcription [K]	0.89
COG2188	DNA-binding transcriptional regulator, GntR family	Transcription [K]	0.89
COG2186	DNA-binding transcriptional regulator, FadR family	Transcription [K]	0.89
COG1959	DNA-binding transcriptional regulator, IscR family	Transcription [K]	0.89
COG1869	D-ribose pyranose/furanose isomerase RbsD	Carbohydrate transport and metabolism [G]	0.89
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.89
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.89
COG1725	DNA-binding transcriptional regulator YhcF, GntR family	Transcription [K]	0.89
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.89
COG1414	DNA-binding transcriptional regulator, IclR family	Transcription [K]	0.89
COG0658	DNA uptake channel protein ComEC, N-terminal domain	Intracellular trafficking, secretion, and vesicular transport [U]	0.89
COG0640	DNA-binding transcriptional regulator, ArsR family	Transcription [K]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	70.54 %
Unclassified	root	N/A	29.46 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	70.54 %
Unclassified	root	N/A	29.46 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	69.64 %
Unclassified	root	N/A	29.46 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.89 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	50.00 %
Unclassified	root	N/A	29.46 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.89 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	0.89 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	44.64 %
Unclassified	root	N/A	29.46 %
Fungi	kingdom	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi	0.89 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.89 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.89 %

Name	Rank	Taxonomy	Distribution
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	41.07 %
Unclassified	root	N/A	29.46 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.89 %
Dikarya	subkingdom	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya	0.89 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.89 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	37.50 %
Unclassified	root	N/A	29.46 %
Bryobacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae	0.89 %
Deltaproteobacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis	0.89 %
Ascomycota	phylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota	0.89 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.89 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.46 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	10.71 %
Candidatus Sulfopaludibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter	4.46 %
unclassified Bryobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae	0.89 %
Deferrisoma	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → Deferrisoma	0.89 %
saccharomyceta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta	0.89 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.89 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.46 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	10.71 %
unclassified Candidatus Sulfopaludibacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter	2.68 %
Bryobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	0.89 %
Deferrisoma camini	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → Deferrisoma → Deferrisoma camini	0.89 %
Saccharomycotina	subphylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina	0.89 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.89 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.46 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	10.71 %
Candidatus Sulfopaludibacter sp. SbA4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	1.79 %
Candidatus Sulfopaludibacter sp. SbA3	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3	0.89 %
Saccharomycetes	class	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes	0.89 %
Bryobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	0.89 %
Deferrisoma camini	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → Deferrisoma → Deferrisoma camini	0.89 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.89 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.46 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	10.71 %
Candidatus Sulfopaludibacter sp. SbA4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	1.79 %
Saccharomycetales	order	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales	0.89 %
Candidatus Sulfopaludibacter sp. SbA3	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3	0.89 %
Bryobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	0.89 %
Deferrisoma camini	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → Deferrisoma → Deferrisoma camini	0.89 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.89 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.46 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	10.71 %
Candidatus Sulfopaludibacter sp. SbA4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	1.79 %
Trichomonascaceae	family	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Trichomonascaceae	0.89 %
Candidatus Sulfopaludibacter sp. SbA3	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3	0.89 %
Bryobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	0.89 %
Deferrisoma camini	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → Deferrisoma → Deferrisoma camini	0.89 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.89 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.46 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	10.71 %
Candidatus Sulfopaludibacter sp. SbA4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	1.79 %
Sugiyamaella	genus	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Trichomonascaceae → Sugiyamaella	0.89 %
Candidatus Sulfopaludibacter sp. SbA3	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3	0.89 %
Bryobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	0.89 %
Deferrisoma camini	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → Deferrisoma → Deferrisoma camini	0.89 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.89 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.46 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	10.71 %
Candidatus Sulfopaludibacter sp. SbA4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	1.79 %
Sugiyamaella lignohabitans	species	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Trichomonascaceae → Sugiyamaella → Sugiyamaella lignohabitans	0.89 %
Candidatus Sulfopaludibacter sp. SbA3	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3	0.89 %
Bryobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	0.89 %
Deferrisoma camini	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → Deferrisoma → Deferrisoma camini	0.89 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.89 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.89 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000567\|JGI12270J11330_10002216	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	14326	Open in IMG/M
3300003218\|JGI26339J46600_10008167	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	3061	Open in IMG/M
3300003218\|JGI26339J46600_10140052	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	568	Open in IMG/M
3300004133\|Ga0058892_1053451	Not Available	657	Open in IMG/M
3300004139\|Ga0058897_10392382	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	665	Open in IMG/M
3300004140\|Ga0058894_1473494	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	1275	Open in IMG/M
3300004477\|Ga0068971_1432515	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	667	Open in IMG/M
3300004478\|Ga0068972_1333563	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	661	Open in IMG/M
3300004631\|Ga0058899_11482963	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	632	Open in IMG/M
3300004964\|Ga0072331_1118450	Not Available	520	Open in IMG/M
3300005347\|Ga0070668_100252180	All Organisms → cellular organisms → Bacteria	1465	Open in IMG/M
3300005439\|Ga0070711_101516846	Not Available	585	Open in IMG/M
3300005548\|Ga0070665_100200096	All Organisms → cellular organisms → Bacteria → Acidobacteria	1998	Open in IMG/M
3300005564\|Ga0070664_100817243	Not Available	872	Open in IMG/M
3300005640\|Ga0075035_1567532	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	838	Open in IMG/M
3300005995\|Ga0066790_10299720	Not Available	685	Open in IMG/M
3300006052\|Ga0075029_100005378	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7096	Open in IMG/M
3300009177\|Ga0105248_10327643	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3	1725	Open in IMG/M
3300009523\|Ga0116221_1012096	All Organisms → cellular organisms → Bacteria	4929	Open in IMG/M
3300009839\|Ga0116223_10670188	Not Available	596	Open in IMG/M
3300010154\|Ga0127503_10564251	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	665	Open in IMG/M
3300010339\|Ga0074046_10422847	Not Available	802	Open in IMG/M
3300010341\|Ga0074045_10174725	Not Available	1448	Open in IMG/M
3300010379\|Ga0136449_100004149	All Organisms → cellular organisms → Bacteria	43334	Open in IMG/M
3300010379\|Ga0136449_101299877	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	1134	Open in IMG/M
3300010379\|Ga0136449_101389220	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	1085	Open in IMG/M
3300011090\|Ga0138579_1056598	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	656	Open in IMG/M
3300011120\|Ga0150983_11065620	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	922	Open in IMG/M
3300011120\|Ga0150983_12382861	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	831	Open in IMG/M
3300011120\|Ga0150983_13304828	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	1622	Open in IMG/M
3300011120\|Ga0150983_13374201	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	685	Open in IMG/M
3300011120\|Ga0150983_14904215	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	1500	Open in IMG/M
3300011120\|Ga0150983_16317421	Not Available	690	Open in IMG/M
3300012199\|Ga0137383_11059729	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	589	Open in IMG/M
3300012212\|Ga0150985_100624949	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter	1569	Open in IMG/M
3300012212\|Ga0150985_109560700	Not Available	1097	Open in IMG/M
3300012212\|Ga0150985_114629228	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter	678	Open in IMG/M
3300012357\|Ga0137384_10192862	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	1705	Open in IMG/M
3300012361\|Ga0137360_10239560	Not Available	1485	Open in IMG/M
3300012469\|Ga0150984_110321940	Not Available	521	Open in IMG/M
3300012469\|Ga0150984_117255069	All Organisms → cellular organisms → Bacteria	809	Open in IMG/M
3300014151\|Ga0181539_1290706	Not Available	602	Open in IMG/M
3300014153\|Ga0181527_1038967	All Organisms → cellular organisms → Bacteria	2697	Open in IMG/M
3300014158\|Ga0181521_10401479	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
3300014161\|Ga0181529_10001814	All Organisms → cellular organisms → Bacteria → Acidobacteria	26756	Open in IMG/M
3300014161\|Ga0181529_10007513	All Organisms → cellular organisms → Bacteria	10848	Open in IMG/M
3300014162\|Ga0181538_10245163	Not Available	989	Open in IMG/M
3300014164\|Ga0181532_10316143	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	881	Open in IMG/M
3300014489\|Ga0182018_10000001	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	372261	Open in IMG/M
3300014494\|Ga0182017_10091537	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	1996	Open in IMG/M
3300014496\|Ga0182011_10254032	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	1179	Open in IMG/M
3300014496\|Ga0182011_10328404	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	1010	Open in IMG/M
3300014502\|Ga0182021_10008016	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	12527	Open in IMG/M
3300014502\|Ga0182021_12449587	Not Available	628	Open in IMG/M
3300014502\|Ga0182021_13604660	Not Available	514	Open in IMG/M
3300014838\|Ga0182030_10002878	All Organisms → cellular organisms → Bacteria	36631	Open in IMG/M
3300014839\|Ga0182027_10016258	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	10173	Open in IMG/M
3300015371\|Ga0132258_12355025	All Organisms → cellular organisms → Bacteria	1335	Open in IMG/M
3300017792\|Ga0163161_11838910	Not Available	539	Open in IMG/M
3300017925\|Ga0187856_1052741	All Organisms → cellular organisms → Bacteria	1773	Open in IMG/M
3300017988\|Ga0181520_10127337	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2116	Open in IMG/M
3300018003\|Ga0187876_1050994	Not Available	1707	Open in IMG/M
3300018024\|Ga0187881_10475584	Not Available	509	Open in IMG/M
3300018030\|Ga0187869_10433819	Not Available	625	Open in IMG/M
3300018033\|Ga0187867_10031581	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	3296	Open in IMG/M
3300018040\|Ga0187862_10204819	Not Available	1293	Open in IMG/M
3300018057\|Ga0187858_10394621	Not Available	861	Open in IMG/M
3300019787\|Ga0182031_1324598	Not Available	1514	Open in IMG/M
3300020579\|Ga0210407_11446224	Not Available	509	Open in IMG/M
3300021478\|Ga0210402_11105199	All Organisms → cellular organisms → Bacteria	720	Open in IMG/M
3300021559\|Ga0210409_10263125	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	1560	Open in IMG/M
3300021855\|Ga0213854_1156453	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	752	Open in IMG/M
3300021858\|Ga0213852_1077942	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	2876	Open in IMG/M
3300022525\|Ga0242656_1078756	Not Available	615	Open in IMG/M
3300022724\|Ga0242665_10194894	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	665	Open in IMG/M
3300022724\|Ga0242665_10202604	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	654	Open in IMG/M
3300025916\|Ga0207663_11116822	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	634	Open in IMG/M
3300025925\|Ga0207650_11561716	Not Available	560	Open in IMG/M
3300026215\|Ga0209849_1006747	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	1855	Open in IMG/M
3300026294\|Ga0209839_10078585	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	1149	Open in IMG/M
3300027570\|Ga0208043_1124833	All Organisms → cellular organisms → Bacteria	683	Open in IMG/M
3300027745\|Ga0209908_10076307	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Trichomonascaceae → Sugiyamaella → Sugiyamaella lignohabitans	791	Open in IMG/M
3300027825\|Ga0209039_10000360	All Organisms → cellular organisms → Bacteria	44331	Open in IMG/M
3300027825\|Ga0209039_10003020	All Organisms → cellular organisms → Bacteria	13565	Open in IMG/M
3300027854\|Ga0209517_10101876	All Organisms → cellular organisms → Bacteria	1933	Open in IMG/M
3300027854\|Ga0209517_10302720	Not Available	933	Open in IMG/M
3300028379\|Ga0268266_10183295	All Organisms → cellular organisms → Bacteria	1908	Open in IMG/M
3300030730\|Ga0307482_1049248	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	1019	Open in IMG/M
3300031231\|Ga0170824_121596859	Not Available	797	Open in IMG/M
3300031235\|Ga0265330_10300579	All Organisms → cellular organisms → Bacteria → Acidobacteria	676	Open in IMG/M
3300031241\|Ga0265325_10161818	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	1052	Open in IMG/M
3300031344\|Ga0265316_10039837	All Organisms → cellular organisms → Bacteria → Acidobacteria	3771	Open in IMG/M
3300031715\|Ga0307476_10727289	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	735	Open in IMG/M
3300031939\|Ga0308174_10323188	All Organisms → cellular organisms → Bacteria	1223	Open in IMG/M
3300031954\|Ga0306926_12523663	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	563	Open in IMG/M
3300031962\|Ga0307479_11818186	Not Available	561	Open in IMG/M
3300031996\|Ga0308176_12226545	Not Available	585	Open in IMG/M
3300032160\|Ga0311301_10628470	Not Available	1537	Open in IMG/M
3300032160\|Ga0311301_11286665	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	926	Open in IMG/M
3300032160\|Ga0311301_12466284	Not Available	583	Open in IMG/M
3300032892\|Ga0335081_10174991	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	3019	Open in IMG/M
3300032892\|Ga0335081_10321296	All Organisms → cellular organisms → Bacteria → Acidobacteria	2036	Open in IMG/M
3300033402\|Ga0326728_10002083	All Organisms → cellular organisms → Bacteria	68024	Open in IMG/M
3300033402\|Ga0326728_10004756	All Organisms → cellular organisms → Bacteria	39538	Open in IMG/M
3300033402\|Ga0326728_10088699	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → Deferrisoma → Deferrisoma camini	3867	Open in IMG/M
3300033513\|Ga0316628_100128145	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	2921	Open in IMG/M
3300033798\|Ga0334821_080954	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	644	Open in IMG/M
3300033890\|Ga0334810_052269	All Organisms → cellular organisms → Bacteria	999	Open in IMG/M
3300033982\|Ga0371487_0011299	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	7043	Open in IMG/M
3300033983\|Ga0371488_0010252	All Organisms → cellular organisms → Bacteria	7825	Open in IMG/M
3300033983\|Ga0371488_0358243	Not Available	684	Open in IMG/M
3300034091\|Ga0326724_0298822	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	896	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	85.71%
Host-Associated	Host-Associated	14.29%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	65.18%
Aquatic	Environmental → Aquatic	20.54%
Plants	Host-Associated → Plants	14.29%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	57.14%
Freshwater	Environmental → Aquatic → Freshwater	19.64%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.82%
Peat	Environmental → Terrestrial → Peat	8.04%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.46%
Sediment	Environmental → Aquatic → Sediment	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	28.57%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	17.86%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	16.96%
Loam	Environmental → Terrestrial → Soil → Loam	10.71%
Soil	Host-Associated → Plants → Rhizosphere → Soil	8.93%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	8.04%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.57%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.79%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.89%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	16.96%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.96%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	13.39%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	9.82%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	8.93%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	8.04%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.46%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.57%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.79%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.79%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	14.29%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	8.93%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	7.14%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	6.25%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	6.25%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	6.25%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.36%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.57%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.57%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.68%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.68%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.68%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	2.68%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	2.68%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	2.68%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	1.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.79%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.79%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	1.79%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.79%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	1.79%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.79%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.89%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.89%
Thawing Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Thawing Permafrost	0.89%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	0.89%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.89%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300003218	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1	Environmental	Open in IMG/M
3300004133	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF220 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004139	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF230 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004140	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF224 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004477	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 65 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004478	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 69 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004964	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 77 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005640	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate RNA 2013_052 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005995	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011090	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 69 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300014151	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_60_metaG	Environmental	Open in IMG/M
3300014153	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_60_metaG	Environmental	Open in IMG/M
3300014158	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaG	Environmental	Open in IMG/M
3300014161	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_30_metaG	Environmental	Open in IMG/M
3300014162	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014494	Permafrost microbial communities from Stordalen Mire, Sweden - 712E3D metaG	Environmental	Open in IMG/M
3300014496	Permafrost microbial communities from Stordalen Mire, Sweden - 711E1D metaG	Environmental	Open in IMG/M
3300014502	Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014839	Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017925	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40	Environmental	Open in IMG/M
3300017988	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG	Environmental	Open in IMG/M
3300018003	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_40	Environmental	Open in IMG/M
3300018024	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_100	Environmental	Open in IMG/M
3300018030	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100	Environmental	Open in IMG/M
3300018033	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental	Open in IMG/M
3300019787	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021855	Metatranscriptome of freshwater sediment microbial communities from pre-fracked creek in Pennsylvania, United States - G-2016_18 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021858	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2015 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022525	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026215	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-048 (SPAdes)	Environmental	Open in IMG/M
3300026294	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050 (SPAdes)	Environmental	Open in IMG/M
3300027570	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG (SPAdes)	Environmental	Open in IMG/M
3300027745	Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 812P2M	Environmental	Open in IMG/M
3300027825	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031235	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG	Host-Associated	Open in IMG/M
3300031241	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG	Host-Associated	Open in IMG/M
3300031344	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG	Host-Associated	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300033798	Peat soil microbial communities from Stordalen Mire, Sweden - 713 E-3-S	Environmental	Open in IMG/M
3300033890	Peat soil microbial communities from Stordalen Mire, Sweden - 713 E-1-M	Environmental	Open in IMG/M
3300033982	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB22AY SIP fraction	Environmental	Open in IMG/M
3300033983	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB23AN SIP fraction	Environmental	Open in IMG/M
3300034091	Peat soil microbial communities from McLean, Ithaca, NY, United States - MB00N	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_100022169	3300000567	Peatlands Soil	MHVFQETQVNKTRRVTQAFEAKLMASRRRERFAAGELLMLLDSPESPVRSMFVRINGLRPTRGVECQYIIESDELNEKTEMARPTP*
JGI26339J46600_100081674	3300003218	Bog Forest Soil	VNTKLRVKQAFNAKAVASRRREKFNAGELLMVVDGQESPSESRFVRINGLRPGRGLECRYTIESVELKEMTEIARQPH*
JGI26339J46600_101400521	3300003218	Bog Forest Soil	VNTKRRVTQAFEAKLMASRRRERFVTGELLTEIDSPESPAQSVFIRINGLRPSRGLECRYIIEAGELNEKTEM
Ga0058892_10534511	3300004133	Forest Soil	MNTKRRVTQTFEAKLVASRGRERFATGELLMLVDSPESPENSRFMRINGLRPSRGVECQYIIESSELNEKTEMAR*
Ga0058897_103923822	3300004139	Forest Soil	MSTKRRVTQAFAAKLVASRRRENFATGELLMLLDSPESPESSRFMRINGLRPSRGVECQYIIESSELNEKTEMAR*
Ga0058894_14734942	3300004140	Forest Soil	MNTKRRVTQTFEAKLVASRGREKFATGELLMLVDSPGSSPESSRFMRINGLRPSRGVECQYIIESSELNEKTEMAR*
Ga0068971_14325151	3300004477	Peatlands Soil	VNKTRRVTQAFEAKLMASRRRERFAAGELLMLLDSPESPVRSMFVRINGLRPTRGVECQYIIESDELNEKTEMARPT
Ga0068972_13335632	3300004478	Peatlands Soil	MHVFQETQVNKTRRVTQAFEAKLMASRRRERFAAGELLMLLDSPESPVRSMFVRINGLRPTRGVECQYIIESDELNEKT
Ga0058899_114829631	3300004631	Forest Soil	MVLELPVNIKRRVTASFEAKLATSRGRERFGAGELVMLLDGQELPPNSRFVRINGLRPSRGVECQYIIESVEFNEKTEVAK*
Ga0072331_11184501	3300004964	Peatlands Soil	MITRLRVKQTFNANLVASRRREKFDAGELLMLVDGPKTPSQSRFVRINGLRPSRGVECQYCMESAELTEKTEIAKLA*
Ga0070668_1002521803	3300005347	Switchgrass Rhizosphere	MDQNSVSEVLVIKNRLKVTLAFNATLVSSRRREKFDAGELLMMVDSPEQPALTRFVRINGLRPSRGVECQYTLESEELKEKTEAVR*
Ga0070711_1015168461	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	VTKRIRVTQPFNAKLVASRRLEKFYAGELLMLVECPEAPTHSRFSRINGLRPFQGVECQYLIESVELSEKTEVLGPAANR*
Ga0070665_1002000962	3300005548	Switchgrass Rhizosphere	MNQNSVSEVLVIKNRLKVTLAFNATLVSSRRREKFDAGELLMMVDSPEQPALTRFVRINGLRPSRGVECQYTLESEELKEKTEAVR*
Ga0070664_1008172433	3300005564	Corn Rhizosphere	MDQNSVSEVLVIKNRLKVTLAFNATLVSSRRREKFDAGELLMLVDSPEQPALTRFVRINGLRPSRGVECQYTLESEELKEKTEAAR*
Ga0075035_15675321	3300005640	Permafrost Soil	MNTNTTRRVTQTFEAKLVASRGRERFATGELLMLVDNPESPENSRFMRINGLRPSRGVECQYIIESSELNEKTEMAR*
Ga0066790_102997202	3300005995	Soil	MITRLRVKQTFSAKLVASRRLEKFDAGELLMLVEGQPSPSESRFVRINGLRPSRGVECQYTLQSDEFQEKTELAKPAQ*
Ga0075029_1000053784	3300006052	Watersheds	MNTKRKVTQAFEAKLVASRRRERFAAGELLMLVDSPESPASSRFMRINGLRPSRGVECQYIVESNELNDKTEVAR*
Ga0105248_103276434	3300009177	Switchgrass Rhizosphere	MDQNSVSEVLVIKNRLKVTLAFNATLVSSRRREKFDAGELLMMVDSPEQPALTRFVRINGLRPSRGVECQYTLESEELKEKTEALR*
Ga0116221_10120962	3300009523	Peatlands Soil	MHVFQETQVNKTRRVTQAFEAKLMASRRRERFAAGKLLMLLDSPESPVRSMFVRINGLRPTRGVECQYIIESDELNEKTEMARPTP*
Ga0116223_106701881	3300009839	Peatlands Soil	VNTKLRVTHAFNAKAVASRRREKFDAGELLMLVDGQESPSESRFVRINGLRPGRGLECRYTIESVELKEMTEIARQPH*
Ga0127503_105642512	3300010154	Soil	VKTEVLVNKRIRVTQAFNAKLVASRRLEKFHTGELLMLLECPESPAHSRFARINGLRPFQGVECQYTIESIELNEKTEAVPQQSR*
Ga0074046_104228471	3300010339	Bog Forest Soil	AFPLEFPVNTKRRVTESFEAKLATSRGRERFGAGELLMLLDGQEVPPNSRFVRINGLRPSRGVECQYVIESAEFNEKTETAR*
Ga0074045_101747251	3300010341	Bog Forest Soil	VNTKLRVTQAFNAKAVASRRREKFDAGELLMLVDGQESPSESRFVRINGLRPGRGLECRYSMESTELKEMTEVARQPQ*
Ga0136449_10000414924	3300010379	Peatlands Soil	VNTKLRVTQAFNAKAVASRRREKFNAGELLMLVDGQESPSESRFVRINGLRPGRGLECRYTIESVELKEMTEIARQPH*
Ga0136449_1012998772	3300010379	Peatlands Soil	MSKTHSVEESPVNTKRRVTQAFEAKLMASRRRERFVAGELLTLIDCPESPLHSAFIRINGLRASRGLECRYLIESVELNEKTETAT*
Ga0136449_1013892202	3300010379	Peatlands Soil	MITRLRVKQTFNANLVASRRREKFDAGELLMLVDGPKTPSQSRFVRINGLRPSRGVECQYLLESVELTEKTEIAKQASVPR*
Ga0138579_10565982	3300011090	Peatlands Soil	MITRLRVKQTFNANLVASRRREKFDAGELLMLVDGPKTPSQSRFVRINGLRPSRGVECQYILESVEFTEKTEIAKQASVPR
Ga0150983_110656202	3300011120	Forest Soil	VTHAFEARLIASRRREKFGEGELLMRVDGPELPEQSRFQRISGLRPSRGVECQYIVESDDLTQNTQVAK*
Ga0150983_123828612	3300011120	Forest Soil	VPVNNKKIRVTQAFNAKLVASRRLEKFYAGELLLLLECPESPDRSRFARINGLRPFAGVECQYLIDSVELHEKTEAVGPNR*
Ga0150983_133048282	3300011120	Forest Soil	MNTKRRVTQTFEAKLVASRGRERFATGELLMLVDSPDSPENSRFMRINGLRPSRGVECQYIIESSELNEKTEMAR*
Ga0150983_133742011	3300011120	Forest Soil	MTRLRVKQAFNAKLVTGRRREKFDAGELLMLVDGPEAPAQSRFVRINGLRPGGGLECQYILESDEFQEKTEVARQTH*
Ga0150983_149042152	3300011120	Forest Soil	MNTKRRVTQTFEAKLVASRRRERFAAGELLMLVDCPEAPVNSRFIRINGLRPSRGVECNYIIESSELNEKTEMAR*
Ga0150983_163174211	3300011120	Forest Soil	QAFNAKLVTGRRREKFDAGELLMLVDGPEAPAQSRFVRINGLRPGGGLECQYILESDEFQEKTEVARQTH*
Ga0137383_110597292	3300012199	Vadose Zone Soil	MNTKRRVTQTFEAKLVATRRRERFAAGELLMLVACPEAPVSSRFMRINGLRPSRGVECHYIIESTELNEKTEMVTGP
Ga0150985_1006249493	3300012212	Avena Fatua Rhizosphere	MTTTLKVKEAFNATLVASRRREKFYEGELLMVVDGAESPLETRFVRINGLRPSRGIECRYSLESSELRDKTEVAKTSK*
Ga0150985_1095607003	3300012212	Avena Fatua Rhizosphere	MTNTTLRVKETFNANLVASRRREKFYAGELLMLINGSESPSESWFIRINGLRPSQGVECRYTLESEELKEKTEIAKRAAK*
Ga0150985_1146292282	3300012212	Avena Fatua Rhizosphere	MTTTLRVTQTFNATLVASLRREKFDAGELLMLVDGSESPAESRFIRINGLRPSRGIECRYSLESIELNEKTEIAKRPR*
Ga0137384_101928624	3300012357	Vadose Zone Soil	MNTKRRVTQTFEAKLVATRRRERFAAGELLMLVACPEAPVSSRFMRINGLRPSRGVECHYIIESTELNEKTEMVTGPMDKGRG*
Ga0137360_102395601	3300012361	Vadose Zone Soil	MNTKRRVTQPFDAKHVDSRTREKFAAGELLMVVDGPEAPANSTFTRINGLRPRRGVECHYIIESAELNEKTEVAK*
Ga0150984_1103219401	3300012469	Avena Fatua Rhizosphere	VTQTFNATLVASRRREKFDAGELLMLVDGSESPAESRFIRINGLRPSRGIECRYSLESIELNEKTEIAK
Ga0150984_1172550692	3300012469	Avena Fatua Rhizosphere	VIQPRLRVKQAFDAKQVSTRRREKFDTGELLMVVASPESPDLTRFVRINGLRPSRGVECQYTLEPEEFLQKTEPFRVA*
Ga0181539_12907061	3300014151	Bog	VNTKLRVTQAFNAKAVASRRREKFDAGELLMLVDGQESPSESRFVRINGLRPGRGLECRYTMESNELKEMTEIARQPQ*
Ga0181527_10389672	3300014153	Bog	VNTKLRVTQAFNAKAVASRRREKFDAGELLMLVDGQESPSESRFVRINGLRPGRGLECRYTMESTELKEMTEVARQPQ*
Ga0181521_104014792	3300014158	Bog	VEVNTKLRVTQAFNAKAVASRRREKFDAGELLMLVDGQELPSESRFVRINGLRPGRGLECRYTMESNELKEMTEIARQPQ*
Ga0181529_1000181421	3300014161	Bog	MKRRVTQAFEAKLMASRRRERFVTGELLMLIDCPESPVHSAFIRINGLRPSRGLECRYIIESDELNGRTELAK*
Ga0181529_100075132	3300014161	Bog	MSKTQTVEETPLKRRVTQAFEAKLMASRRRERFVAGELLMLIDSPEAPVHTVFIRINGLRPSRGLECRYMMESDEWNEKTETAK*
Ga0181538_102451632	3300014162	Bog	VNTKLRVTQAFNAKAVASRRREKFDAGELLMLVDGQESPSESRFVRINGLRPGRGLECRYTMESNELKEMTEVARQPQ*
Ga0181532_103161431	3300014164	Bog	AFNAKAVASRRREKFDAGELLMLVDGQESPSESRFVRINGLRPGRGLECRYTMESNELKEMTEVARQPQ*
Ga0182018_10000001244	3300014489	Palsa	MPKTQAVEETLLNAKRKVTQAFEAKLMASRRRERFVTGELLMLINSPEPPEQSVFIRINGLRPSRGLECRYIIEANELNEKTEMAK*
Ga0182017_100915373	3300014494	Fen	VTQAFEAKLMASRRRERFVTGELLTQIDCPESPAQSVFIRINGLRPSRGLECRYIIEAGELNEKTEMAK*
Ga0182011_102540322	3300014496	Fen	MKRRVTQAFEAKLMASRRRERFVTGELLTQIDSPESPAQSVFIRINGLRPSRGLECRYIIEAGELNEKTEMAK*
Ga0182011_103284042	3300014496	Fen	VTQAFEAQLMASRRRERFVTGELLTEIDSPESPAQSVFIRINGLRPSRGLECRYIIEAGELNEKTEMAK*
Ga0182021_1000801614	3300014502	Fen	LNTKRRVTQAFEAKLMASRRRERFVTGELLTQIDCPESPAQSVFIRINGLRPSRGLECRYIIEAGELNEKTEMAK*
Ga0182021_124495871	3300014502	Fen	VTQAFEAKLMASRRRERFVTGELLTQIDCPESPAQSVFIRINGLRPSRGLECRYIIEAGELNEKTEMAQ*
Ga0182021_136046601	3300014502	Fen	TKRRVTQAFEAKLMASRRRERFVTGELLTQMDSPESPAHSVFIRINGLRPSRGLECRYIIDAEELNLKTEMAK*
Ga0182030_1000287819	3300014838	Bog	VPVNTKLRVTHAFNAKAVASRRREKFDTGELLMVVNGPASEAESIFVRINGLRSGKGLECHYTIAPSELKEMTEIAIHPK*
Ga0182027_100162584	3300014839	Fen	MSRTGGVEETRLNTKRRVTQAFEAQLMASRRRERFVTGELLTEIDSPESPAQSVFIRINGLRPSRGLECRYIIEAGELNEKTEMAK*
Ga0132258_123550253	3300015371	Arabidopsis Rhizosphere	VIQTRLRVKQAFDAKQVSTRRREKFDTGELLMVVASPESPDLTRFVRINGLRPSRGVECQYTLEPEEFLQKTEPFRVA*
Ga0163161_118389101	3300017792	Switchgrass Rhizosphere	KNRLKVTLAFNATLVSSRRREKFDAGELLMMVDSPEQPALTRFVRINGLRPSRGVECQYTLESEELKEKTEAVR
Ga0187856_10527413	3300017925	Peatland	VNTKLRVTQAFNAKAVASRRREKFDAGELLMLVDGQESPSESRFVRINGLRPGRGLECRYTMESTELKEMTEVARQPQ
Ga0181520_101273372	3300017988	Bog	MSKTQTVEETPLKRRVTQAFEAKLMASRRRERFVAGELLMLIDSPEAPVHTVFIRINGLRPSRGLECRYMMESDEWNEKTETAK
Ga0187876_10509942	3300018003	Peatland	VNTKLRVTQAFNAKAVASRRREKFDAGELLMLVDGQESPSESRFVRINGLRPGRGLECRYTMASNELKEMTEIAKQPQ
Ga0187881_104755841	3300018024	Peatland	QHTTILKRWPVNTKLRVTQAFNAKAVASRRREKFDAGELLMLVDGQESPSESRFVRINGLRPGRGLECRYTMESNELKEMTEIAKQPQ
Ga0187869_104338191	3300018030	Peatland	KCDDPLTSAGTVRIQPFITRWQVNTKLRVTQAFNAKAVASRRREKFDAGELLMLVDGQESPSESRFVRINGLRPGRGLECRYTMESNELKEMTEVARQPQ
Ga0187867_100315815	3300018033	Peatland	VNTKLRVTQAFNAKAVASRRREKFDAGELLMLVDGQESPSESRFVRINGLRPGRGLECRYTMESNELKEMTEVARQPQ
Ga0187862_102048193	3300018040	Peatland	VNTKLRVTQAFNAKAVASRRREKFDAGELLMLVDGQESPSESRFVRINGLRPGRGLECRYTIESTELKEMTEIARQPR
Ga0187858_103946212	3300018057	Peatland	VNTKLRVTQAFNAKAVASRRREKFDAGELLMLVDGQESPSESRFVRINGLRPGRGLECRYTMESTELKEM
Ga0182031_13245984	3300019787	Bog	VNTKLRVTHAFNAKAVASRRREKFDTGELLMVVNGPASEAESIFVRINGLRSGKGLECHYTIAPSELKEMTEIAIHPK
Ga0210407_114462242	3300020579	Soil	MNTKRRVTQTFEAKLVASRGRERFATGELLMLVDSPDSPENSRFMRINGLRPSRGVECQYIIESSELNEKTEMAR
Ga0210402_111051992	3300021478	Soil	MKMLRVKETFNAKLVASRRREKFDAGELLMLVDSPELPLSSRFVRINGLRASRGVECQYSIESAELNEKTEVAKQAH
Ga0210409_102631251	3300021559	Soil	MSTKRRVTQAFAAKLVASRRRENFATGELLMLLDSPESPESSRFMRINGLRPSRGVECQYIIESSELNEKTEMAR
Ga0213854_11564532	3300021855	Watersheds	MNTKRRVTQAFEAKLVASRRRERFATGELLIMVDSPELPENSRFIRICGLRPSRGVECQYIIESTELNEKTEMAR
Ga0213852_10779422	3300021858	Watersheds	MNTKRKVTQAFEAKLVASRRRERFAAGELLMLVDSPESPASSRFMRINGLRPSRGVECQYIVESNELNDKTEVAR
Ga0242656_10787561	3300022525	Soil	AFAAKLVASRRRENFATGELLMLLDSPESPESSRFMRINGLRPSRGVECQYIIESSELNEKTEMAR
Ga0242665_101948942	3300022724	Soil	MNTKRRVTQTFEAKLVASRGRERFATGELLMLVDSPESPESSRFMRINGLRPSRGVECQYIIESSELNEKTEMAR
Ga0242665_102026042	3300022724	Soil	MSTKRRVTQAFAAKLVASRRRENFATGELLMLLDSPESPESSRFMRINGLRPSRGVECQYIIESSELNEKTEM
Ga0207663_111168222	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	VTKRIRVTQPFNAKLVASRRLEKFYAGELLMLVECPEAPTHSRFSRINGLRPFQGVECQYLIESVELSEKTEVLGPAANR
Ga0207650_115617162	3300025925	Switchgrass Rhizosphere	MDQNSVSEVLVIKNRLKVTLAFNATLVSSRRREKFDAGELLMLVDSPEQPALTRFVRINGLRPSRGVECQYTLESEELKEKTEAAR
Ga0209849_10067473	3300026215	Soil	MNTNTTRRVTQTFEAKLVASRGRERFATGELLMLVDNPESPENSRFMRINGLRPSRGVECQYIIESSELNEKTEMAR
Ga0209839_100785852	3300026294	Soil	MITRLRVKQTFSAKLVASRRLEKFDAGELLMLVEGQPSPSESRFVRINGLRPSRGVECQYTLQSDEFQEKTELAKPAQ
Ga0208043_11248332	3300027570	Peatlands Soil	MHVFQETQVNKTRRVTQAFEAKLMASRRRERFAAGELLMLLDSPESPVRSMFVRINGLRPTRGVECQYIIESDELNEKTEMARPTP
Ga0209908_100763072	3300027745	Thawing Permafrost	MPKTQAVEETLLNAKRKVTQAFEAKLMASRRRERFVTGELLMLINSPEPPEQSVFIRINGLRPSRGLECRYIIEANELNEKTEMAK
Ga0209039_1000036030	3300027825	Bog Forest Soil	VNTKLRVKQAFNAKAVASRRREKFNAGELLMVVDGQESPSESRFVRINGLRPGRGLECRYTIESVELKEMTEIARQPH
Ga0209039_1000302013	3300027825	Bog Forest Soil	VNTKRRVTQAFEAKLMASRRRERFVTGELLTEIDSPESPAQSVFIRINGLRPSRGLECRYIIEAGELNEKTEMAK
Ga0209517_101018762	3300027854	Peatlands Soil	VNTKLRVTHAFNAKAVASRRREKFDAGELLMLVDGQESPSESRFVRINGLRPGRGLECRYTMESSELKEMTEVDRQAR
Ga0209517_103027203	3300027854	Peatlands Soil	VNTKLRVTQAFNAKAVASRRREKFNAGELLMLVDGQESPSESRFVRINGLRPGRGLECRYTIESVELKEMTEIARQPH
Ga0268266_101832953	3300028379	Switchgrass Rhizosphere	MDQNSVSEVLVIKNRLKVTLAFNATLVSSRRREKFDAGELLMMVDSPEQPALTRFVRINGLRPSRGVECQYTLESEELKEKTEAVR
Ga0307482_10492482	3300030730	Hardwood Forest Soil	MQKLDEVPMITRLRVKQTFNARLVSGRRREKFDPGELLMVIEGPESPSQSRFVRINGLRPGGGLECQYILESDEFQEKTEVARQTS
Ga0170824_1215968591	3300031231	Forest Soil	LLRFMPGCSNFDKVATMTRLRVKQAFNAKLVTGRRREKFDAGELLMLVDGPEAPAQSRFVRINGLRPGGGLECQYILESDEFQEKTEVARQTH
Ga0265330_103005792	3300031235	Rhizosphere	LPETERFEETHLNTKRRVTQAFEAKLMASRRRERFVTGELLTQMDSPESPAHAVFIRINGLRPSRGLECRYIITSEELNEKTEMAK
Ga0265325_101618182	3300031241	Rhizosphere	VNIRLKVKQTFNAKMVASRRRVRFDAGELLMLVDGPELPLESRFMRINGLRPSRGVECHYTLESAELRDKTDVLAQ
Ga0265316_100398373	3300031344	Rhizosphere	MKRRVTQAFEAKLMASRRRERFVMGELLTQIDSPESPAQSVFIRINGLRPSRGLECRYIIESTELNEKTEMAQ
Ga0307476_107272892	3300031715	Hardwood Forest Soil	MQKLDEVPMITRLRVKQTFNAKLVTGRRREKFDPGELLMVIDGPESPSQSRFVRINGLRPGGGLECQYILESDEFHEKTEVARQGL
Ga0308174_103231881	3300031939	Soil	MMTTTLRVTQTFNATLVASRRREKFDAGELLMLVDGSESPAESRFIRINGLRPSRGIECRYSLESIELNEKTEIAKRPR
Ga0306926_125236632	3300031954	Soil	LKCNASETIREVLMNTKRRVTQAFYARLVASRRREKFGPGELVMLVASPEAPATLRFSRINGLRPSRGVECQYLIESDEWNLKTEAAKLTP
Ga0307479_118181862	3300031962	Hardwood Forest Soil	VNNKKIRVTQAFNAKLVASRRLEKFYAGELLLLLECPESPDRSRFARINGLRPFAGVECQYLIDSVELHEKTEAVGPNR
Ga0308176_122265451	3300031996	Soil	LTPMTNTTLRVKETFNANLVASRRREKFYAGELLMLINGSESPSESWFIRINGLRPSQGVECRYTLESEELKEKTEIAKRAAK
Ga0311301_106284704	3300032160	Peatlands Soil	MITRLRVKQTFNANLVASRRREKFDAGELLMLVDGPKTPSQSRFVRINGLRPSRGVECQYLLESVEFTEKTEIAKQASVPR
Ga0311301_112866653	3300032160	Peatlands Soil	MSKTHSVEESPVNTKRRVTQAFEAKLMASRRRERFVAGELLTLIDCPESPLHSAFIRINGLRASRGLECRYLIESVELNEKTETAT
Ga0311301_124662842	3300032160	Peatlands Soil	VNTKLRVTHAFNAKAVASRRREKFDAGELLMLVDGQESPSESRFVRINGLRPGRGLECRYTMESSELKEM
Ga0335081_101749912	3300032892	Soil	LNKTRRVTQAFEAKLIASRRRERFAAGELLMLLDSPEAPVRSMFVRINGLRPSRGVECHYIIESDELNEKTEMARQSS
Ga0335081_103212962	3300032892	Soil	MTRLRVKQAFNANLVASRRREKFDAGELLMLVDGPKTPTQSRFVRINGLRPSRGVECQYVLESAELTEKTEVANQAGTPR
Ga0326728_1000208334	3300033402	Peat Soil	MIMKRRVTQAFEAKLMASRRRERFVTGELLMLVDGPESPVHSVFIRINGLRPSRGLECRYIIESDELNGRTELAK
Ga0326728_100047562	3300033402	Peat Soil	VNTKRRVTQAFEAQLMASRRRERFVAGELLTQIDSPDSPAQSVFIRINGLRPSRGLECRYIIASGELNEKTEMAK
Ga0326728_100886991	3300033402	Peat Soil	AGFEETRVNTKRRVTQAFEAKLMASRRRERFVTGELLTEIDSPESPAQSVFIRINGLRPSRGLECRYIIEAGELNEKTEMAK
Ga0316628_1001281452	3300033513	Soil	MSVSMRRKVTQPFAANHVASRRRETFSAGELVMPVAGPESPDSVRFMRINGLRPSRGVECQYIIESAEWNEKTAASS
Ga0334821_080954_45_254	3300033798	Soil	VTQAFEAKLMASRRRERFVTGELLTQIDCPESPAQSVFIRINGLRPSRGLECRYIIEAGELNEKTEMAK
Ga0334810_052269_561_782	3300033890	Soil	MKRRVTQAFEAKLMASRRRERFVTGELLTQIDSPESPAQSVFIRINGLRPSRGLECRYIIEAGELNEKTEMAK
Ga0371487_0011299_5800_6009	3300033982	Peat Soil	VTQAFEAQLMASRRRERFVAGELLTQIDSPDSPAQSVFIRINGLRPSRGLECRYIIASGELNEKTEMAK
Ga0371488_0010252_1427_1648	3300033983	Peat Soil	MKRRVTQAFEAKLMASRRRERFVAGELLMLVDCPEAPVQSVFIRINGLRPSRGLECRYIIESEELNGRTELAQ
Ga0371488_0358243_336_611	3300033983	Peat Soil	LPGPGLPGAAGFEETRVNTKRRVTQAFEAKLMASRRRERFVTGELLTEIDSPESPAQSVFIRINGLRPSRGLECRYIIEAGELNEKTEMAK
Ga0326724_0298822_3_206	3300034091	Peat Soil	MIMKRRVTQAFEAKLMASRRRERFVTGELLMLVDGPESPVHSVFIRINGLRPSRGLECRYIIESDELN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F083607

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences