Metagenome / Metatranscriptome Family F083573

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F083573
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	54 residues
Representative Sequence	MDASESDFKNFSLSDSIFVFEEYPITSVSVRIRKEKVTSETILNLSLYLI
Number of Associated Samples	75
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	79.28 %
% of genes near scaffold ends (potentially truncated)	44.64 %
% of genes from short scaffolds (< 2000 bps)	99.11 %
Associated GOLD sequencing projects	75
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.26

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (86.607 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere (77.679 % of family members)
Environment Ontology (ENVO)	Unclassified (90.179 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant surface (83.929 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 14.10% β-sheet: 0.00% Coil/Unstructured: 85.90%
Feature Viewer

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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.26
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.26
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF14223	Retrotran_gag_2	0.89
PF00805	Pentapeptide	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG1357	Uncharacterized conserved protein YjbI, contains pentapeptide repeats	Function unknown [S]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.61 %
All Organisms	root	All Organisms	13.39 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.61 %
cellular organisms	root	All Organisms → cellular organisms	13.39 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.61 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	13.39 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.61 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	13.39 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.61 %
Streptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	13.39 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.61 %
Streptophytina	subphylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina	13.39 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.61 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	13.39 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.61 %
Tracheophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta	13.39 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.61 %
Euphyllophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta	13.39 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.61 %
Spermatophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta	13.39 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.61 %
Magnoliopsida	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	13.39 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.61 %
Mesangiospermae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae	13.39 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.61 %
Liliopsida	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida	13.39 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.61 %
Petrosaviidae	subclass	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae	13.39 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.61 %
commelinids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids	12.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.61 %
Poales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales	12.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.61 %
Poaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	12.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.61 %
PACMAD clade	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade	11.61 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.61 %
Panicoideae	subfamily	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae	11.61 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.61 %
Panicodae	no rank	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae	10.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.61 %
Paniceae	tribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae	10.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.61 %
Panicinae	subtribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae	6.25 %
Cenchrinae	subtribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Cenchrinae	3.57 %
Anthephorinae	subtribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Anthephorinae	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.61 %
Panicum	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum	6.25 %
Setaria	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Cenchrinae → Setaria	3.57 %
Digitaria	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Anthephorinae → Digitaria	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.61 %
Panicum sect. Hiantes	section	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes	3.57 %
Setaria viridis	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Cenchrinae → Setaria → Setaria viridis	2.68 %
Panicum miliaceum	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum	1.79 %
Digitaria exilis	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Anthephorinae → Digitaria → Digitaria exilis	0.89 %
Setaria italica	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Cenchrinae → Setaria → Setaria italica	0.89 %
Panicum sect. Panicum	section	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Panicum	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.61 %
Panicum virgatum	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	3.57 %
Setaria viridis	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Cenchrinae → Setaria → Setaria viridis	2.68 %
Panicum miliaceum	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum	1.79 %
Panicum hallii	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Panicum → Panicum hallii	0.89 %
Digitaria exilis	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Anthephorinae → Digitaria → Digitaria exilis	0.89 %
Setaria italica	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Cenchrinae → Setaria → Setaria italica	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005617\|Ga0068859_102459656	Not Available	574	Open in IMG/M
3300005841\|Ga0068863_101161067	Not Available	777	Open in IMG/M
3300005842\|Ga0068858_100971839	Not Available	832	Open in IMG/M
3300009553\|Ga0105249_12013495	Not Available	650	Open in IMG/M
3300009972\|Ga0105137_101439	Not Available	888	Open in IMG/M
3300009973\|Ga0105136_105726	Not Available	700	Open in IMG/M
3300009981\|Ga0105133_131793	Not Available	505	Open in IMG/M
3300009989\|Ga0105131_137709	Not Available	533	Open in IMG/M
3300009994\|Ga0105126_1013351	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Anthephorinae → Digitaria → Digitaria exilis	818	Open in IMG/M
3300009995\|Ga0105139_1110774	Not Available	531	Open in IMG/M
3300010371\|Ga0134125_12751204	Not Available	535	Open in IMG/M
3300010399\|Ga0134127_11775506	Not Available	693	Open in IMG/M
3300010401\|Ga0134121_11775149	Not Available	643	Open in IMG/M
3300010403\|Ga0134123_13037040	Not Available	538	Open in IMG/M
3300014968\|Ga0157379_11123733	Not Available	753	Open in IMG/M
3300014968\|Ga0157379_12542188	Not Available	512	Open in IMG/M
3300015284\|Ga0182101_1066223	Not Available	582	Open in IMG/M
3300015290\|Ga0182105_1010940	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Cenchrinae → Setaria → Setaria viridis	1037	Open in IMG/M
3300015290\|Ga0182105_1075431	Not Available	573	Open in IMG/M
3300015290\|Ga0182105_1090804	Not Available	537	Open in IMG/M
3300015301\|Ga0182184_1015068	Not Available	939	Open in IMG/M
3300015301\|Ga0182184_1038013	Not Available	700	Open in IMG/M
3300015306\|Ga0182180_1089772	Not Available	513	Open in IMG/M
3300015309\|Ga0182098_1036704	Not Available	769	Open in IMG/M
3300015309\|Ga0182098_1090838	Not Available	570	Open in IMG/M
3300015309\|Ga0182098_1124885	Not Available	507	Open in IMG/M
3300015310\|Ga0182162_1025726	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	881	Open in IMG/M
3300015310\|Ga0182162_1096408	Not Available	563	Open in IMG/M
3300015310\|Ga0182162_1102557	Not Available	550	Open in IMG/M
3300015311\|Ga0182182_1063059	Not Available	638	Open in IMG/M
3300015312\|Ga0182168_1029805	Not Available	870	Open in IMG/M
3300015312\|Ga0182168_1038102	Not Available	804	Open in IMG/M
3300015312\|Ga0182168_1132703	Not Available	509	Open in IMG/M
3300015315\|Ga0182120_1098434	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	577	Open in IMG/M
3300015316\|Ga0182121_1007214	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Cenchrinae → Setaria → Setaria italica	1400	Open in IMG/M
3300015316\|Ga0182121_1026772	Not Available	944	Open in IMG/M
3300015316\|Ga0182121_1110130	Not Available	566	Open in IMG/M
3300015317\|Ga0182136_1062539	Not Available	684	Open in IMG/M
3300015325\|Ga0182148_1061118	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Panicum → Panicum hallii	695	Open in IMG/M
3300015325\|Ga0182148_1123208	Not Available	538	Open in IMG/M
3300015326\|Ga0182166_1059851	Not Available	698	Open in IMG/M
3300015328\|Ga0182153_1103231	Not Available	588	Open in IMG/M
3300015328\|Ga0182153_1110098	Not Available	573	Open in IMG/M
3300015328\|Ga0182153_1114833	Not Available	564	Open in IMG/M
3300015329\|Ga0182135_1060646	Not Available	720	Open in IMG/M
3300015329\|Ga0182135_1121494	Not Available	555	Open in IMG/M
3300015329\|Ga0182135_1152705	Not Available	505	Open in IMG/M
3300015330\|Ga0182152_1125286	Not Available	548	Open in IMG/M
3300015331\|Ga0182131_1126145	Not Available	549	Open in IMG/M
3300015331\|Ga0182131_1153003	Not Available	507	Open in IMG/M
3300015332\|Ga0182117_1030238	Not Available	981	Open in IMG/M
3300015332\|Ga0182117_1074213	Not Available	711	Open in IMG/M
3300015332\|Ga0182117_1118063	Not Available	589	Open in IMG/M
3300015332\|Ga0182117_1166672	Not Available	506	Open in IMG/M
3300015333\|Ga0182147_1119564	Not Available	582	Open in IMG/M
3300015333\|Ga0182147_1132648	Not Available	558	Open in IMG/M
3300015334\|Ga0182132_1059895	Not Available	762	Open in IMG/M
3300015335\|Ga0182116_1102503	Not Available	641	Open in IMG/M
3300015336\|Ga0182150_1045777	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	820	Open in IMG/M
3300015336\|Ga0182150_1137782	Not Available	544	Open in IMG/M
3300015337\|Ga0182151_1128980	Not Available	559	Open in IMG/M
3300015337\|Ga0182151_1154277	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	519	Open in IMG/M
3300015338\|Ga0182137_1053850	Not Available	821	Open in IMG/M
3300015338\|Ga0182137_1083583	Not Available	695	Open in IMG/M
3300015338\|Ga0182137_1125069	Not Available	588	Open in IMG/M
3300015340\|Ga0182133_1062144	Not Available	799	Open in IMG/M
3300015348\|Ga0182115_1135741	Not Available	785	Open in IMG/M
3300015348\|Ga0182115_1227338	Not Available	596	Open in IMG/M
3300015348\|Ga0182115_1248987	Not Available	565	Open in IMG/M
3300015349\|Ga0182185_1073234	Not Available	946	Open in IMG/M
3300015349\|Ga0182185_1257323	Not Available	532	Open in IMG/M
3300015350\|Ga0182163_1167461	Not Available	686	Open in IMG/M
3300015352\|Ga0182169_1113404	Not Available	874	Open in IMG/M
3300015352\|Ga0182169_1133422	Not Available	806	Open in IMG/M
3300015352\|Ga0182169_1193131	Not Available	665	Open in IMG/M
3300015353\|Ga0182179_1154608	Not Available	716	Open in IMG/M
3300015353\|Ga0182179_1193894	Not Available	645	Open in IMG/M
3300015353\|Ga0182179_1240684	Not Available	582	Open in IMG/M
3300015354\|Ga0182167_1104360	Not Available	1037	Open in IMG/M
3300015354\|Ga0182167_1160109	Not Available	830	Open in IMG/M
3300017412\|Ga0182199_1128243	Not Available	605	Open in IMG/M
3300017412\|Ga0182199_1202475	Not Available	505	Open in IMG/M
3300017414\|Ga0182195_1066874	Not Available	801	Open in IMG/M
3300017422\|Ga0182201_1066376	Not Available	658	Open in IMG/M
3300017432\|Ga0182196_1079134	Not Available	637	Open in IMG/M
3300017435\|Ga0182194_1157090	Not Available	500	Open in IMG/M
3300017439\|Ga0182200_1015617	Not Available	1099	Open in IMG/M
3300017440\|Ga0182214_1138217	Not Available	536	Open in IMG/M
3300017445\|Ga0182198_1082264	Not Available	711	Open in IMG/M
3300017447\|Ga0182215_1068116	Not Available	770	Open in IMG/M
3300017692\|Ga0182210_1066254	Not Available	755	Open in IMG/M
3300017693\|Ga0182216_1101623	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae	689	Open in IMG/M
3300017694\|Ga0182211_1042275	Not Available	1037	Open in IMG/M
3300017694\|Ga0182211_1155176	Not Available	545	Open in IMG/M
3300020031\|Ga0182119_104198	Not Available	594	Open in IMG/M
3300025925\|Ga0207650_11921772	Not Available	500	Open in IMG/M
3300028057\|Ga0268352_1013618	Not Available	832	Open in IMG/M
3300028062\|Ga0268342_1007247	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae	907	Open in IMG/M
3300028063\|Ga0268350_1050147	Not Available	606	Open in IMG/M
3300028465\|Ga0268301_102454	Not Available	662	Open in IMG/M
3300028469\|Ga0268337_1002810	Not Available	883	Open in IMG/M
3300028472\|Ga0268315_1010407	Not Available	680	Open in IMG/M
3300028473\|Ga0268319_1020527	Not Available	531	Open in IMG/M
3300028475\|Ga0268327_1013817	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	620	Open in IMG/M
3300032502\|Ga0214490_1088079	Not Available	711	Open in IMG/M
3300032593\|Ga0321338_1051110	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum	1363	Open in IMG/M
3300032689\|Ga0214497_1074043	Not Available	753	Open in IMG/M
3300032698\|Ga0214485_1008843	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum	1616	Open in IMG/M
3300032824\|Ga0314735_1110741	Not Available	503	Open in IMG/M
3300032914\|Ga0314750_1111013	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Cenchrinae → Setaria → Setaria viridis	639	Open in IMG/M
3300033538\|Ga0314755_1049301	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Cenchrinae → Setaria → Setaria viridis	1050	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	96.43%
Environmental	Environmental	3.57%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	96.43%
Terrestrial	Environmental → Terrestrial	3.57%

Habitat	Taxonomy	Distribution
Phyllosphere	Host-Associated → Plants → Phyllosphere	84.82%
Unclassified	Host-Associated → Plants → Unclassified	5.36%
Soil	Environmental → Terrestrial → Soil	3.57%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.57%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.68%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Phyllosphere → Unclassified	84.82%
Unclassified	Host-Associated → Plants → Unclassified → Unclassified	5.36%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	3.57%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.68%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified	84.82%
Unclassified	Host-Associated → Plants → Unclassified → Unclassified → Unclassified	5.36%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	3.57%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Switchgrass Phyllosphere	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere	77.68%
Phyllosphere	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere	7.14%
Switchgrass Associated	Host-Associated → Plants → Unclassified → Unclassified → Unclassified → Switchgrass Associated	5.36%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.57%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.68%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009972	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_224 metaG	Host-Associated	Open in IMG/M
3300009973	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_222 metaG	Host-Associated	Open in IMG/M
3300009981	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_208 metaG	Host-Associated	Open in IMG/M
3300009989	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_197 metaG	Host-Associated	Open in IMG/M
3300009994	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_171 metaG	Host-Associated	Open in IMG/M
3300009995	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_227 metaG	Host-Associated	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015284	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015290	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015301	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015306	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015309	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015310	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015311	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015312	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015315	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015316	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015317	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015325	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015326	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015328	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015329	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015330	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015331	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015332	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015333	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015334	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015335	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015336	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015337	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015338	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015340	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015348	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015349	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015350	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015352	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015353	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015354	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300017412	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017414	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017422	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017432	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017435	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017439	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017440	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300017445	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017447	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300017692	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300017693	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300017694	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300020031	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_31MAY2016_LD2 MG	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028057	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_18SEP2017_LD1	Host-Associated	Open in IMG/M
3300028062	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_28AUG2017_LD1	Host-Associated	Open in IMG/M
3300028063	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_18SEP2017_LD1	Host-Associated	Open in IMG/M
3300028465	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_MAIN_15MAY2017_LD1	Host-Associated	Open in IMG/M
3300028469	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_NF_07AUG2017_LD1	Host-Associated	Open in IMG/M
3300028472	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_05JUN2017_LD1	Host-Associated	Open in IMG/M
3300028473	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_26JUN2017_LD1	Host-Associated	Open in IMG/M
3300028475	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_17JUL2017_LD1	Host-Associated	Open in IMG/M
3300032502	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_12JUL2016_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032593	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_12SEP2016_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032689	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_12JUL2016_LR2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032698	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_31MAY2016_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032824	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_26JUN2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032914	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_07AUG2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300033538	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_28AUG2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0068859_1024596562	3300005617	Switchgrass Rhizosphere	MDASESDFENFSLSDSIFVFEKYPITSVSVRIRKEKMTSETILNLSLYL
Ga0068863_1011610671	3300005841	Switchgrass Rhizosphere	MDASEFDFKNFSLSDSIFVFEEYPITSVSVRIRKEKMTSETILNLSLYLLLNDVHYLNYLES*
Ga0068858_1009718392	3300005842	Switchgrass Rhizosphere	MDASEFDFKNFSLSDSVFVFEEYPITSVSIRIRKEKMTSETILNLSLYLLLNDVHYLNYLES*
Ga0105249_120134951	3300009553	Switchgrass Rhizosphere	MDASESDFENFSLSDFIFVFEEYPITSVSVRIRKEKVTSETILNLSLYLLLNDVHYLNYLES*
Ga0105137_1014392	3300009972	Switchgrass Associated	MDASEFDFKNFSLSDSIFVFEEYPIASVSVRIRKEKVTSETILNLSLYQLLNDVHYLNYLES*
Ga0105136_1057261	3300009973	Switchgrass Associated	MDASESDFKNFSLSDFISVFEEYPITSVSVRIRKEKVTSETILNLSLYLLLNDVHY
Ga0105133_1317931	3300009981	Switchgrass Associated	MDASEFDFKNFSLSDSIFVFEEYPITSVSVRIRKEKVTSETILNLSLYLLLNDVHYLNYLEN*
Ga0105131_1377091	3300009989	Switchgrass Associated	MDASEFDFKNFSLSDSIFVFEEYPIISVSVRIRKEKVTSETILNLSLYLLLNDVHYLNYLES*
Ga0105126_10133511	3300009994	Switchgrass Associated	MDASEFDFKNFSLSDSIFVFEEYPITSVSVRILKEKVTSETILNLSLYLLLNDVHYLNYLES*
Ga0105139_11107741	3300009995	Switchgrass Associated	MDASEFDFKNFSLSDSIFVFEEYPITSVSVRIRKEKVTSETILNLSLYLI
Ga0134125_127512041	3300010371	Terrestrial Soil	MDASEFDFKNFSLSDSVFVFEEYPITSVSVRIRKEKMTSETILNLSLYLLLNDVHYLNYLES*
Ga0134127_117755061	3300010399	Terrestrial Soil	MDVSESVFENFSLSDSIFVFEEYPITSGSIRIRKEKMTSETILNLSLYLLLNDVHYLNYLES*
Ga0134121_117751491	3300010401	Terrestrial Soil	MDAPESDFENFSLSDSIFVFEEYLITSVSVRIRKEKVTSETILNLSLYLIT*
Ga0134123_130370401	3300010403	Terrestrial Soil	MDASEFDFKNFSLSDSIFVFEEYPITSVSVRIRKEKVTSETILNLSLYLLLNDVHYLNYLES*
Ga0157379_111237331	3300014968	Switchgrass Rhizosphere	MDVSESDFKNFSLSDSIFVFEEYPITSVSVRIRKEKVTTEIILNLSLYLIT*
Ga0157379_125421881	3300014968	Switchgrass Rhizosphere	MDVSEFDFKNFSLSDSIFMFEEYPITFVSVRIRKEKVTSETMLNLSLYILLNDVHYLNYLESQITN
Ga0182101_10662231	3300015284	Switchgrass Phyllosphere	MDASEFDFKNFSLSDSVFVFEEYPITSVSVRIRKEKMTSETILNLSLYLLLNDVHYLNYLES
Ga0182105_10109401	3300015290	Switchgrass Phyllosphere	MDASEFDFKNFSLSDSIFVFEEYPITSVSVRIRKEKMTSETILNLSLYLLLNDVHYLNY
Ga0182105_10754311	3300015290	Switchgrass Phyllosphere	MDASESDFENFSLSDSIFVFEKYPITSVSVRTRKEKVTSETILNLFLYLII*
Ga0182105_10908041	3300015290	Switchgrass Phyllosphere	MDVSESDFENSSLSDSIFVFEEYPITFVSIRIRKEKVTSESLYLIT*
Ga0182184_10150681	3300015301	Switchgrass Phyllosphere	MDASEFDFKNFSLSDSIFVFEEYPITSVSVRIRKRIRKEKMTSETILNLSLYLLLNDVHYLNYLES*
Ga0182184_10380131	3300015301	Switchgrass Phyllosphere	MDASESDFENFSLSDFIFVFEKYPITSVSVRIRKEKVTCETILNLSLYLIT*
Ga0182180_10897721	3300015306	Switchgrass Phyllosphere	MNASEFDFKNFSLSDSIFVFEEYPITSVSIRIRKEKVTCETILNL
Ga0182098_10367041	3300015309	Switchgrass Phyllosphere	MDASKSEFENFSLSDSVSVFEEYPITSVSIRIRKEKVTSETILNLSLYIIT
Ga0182098_10908381	3300015309	Switchgrass Phyllosphere	MDVSESDFENFSLSDSIFVFEEYPITSVSICISKEKVTSETILN
Ga0182098_11248851	3300015309	Switchgrass Phyllosphere	MDASEYDFENFSLSDSIFVFEEYPITSVSVRICKKKVTSETILNLSLYLIT*
Ga0182162_10257261	3300015310	Switchgrass Phyllosphere	MDASEFDFENFSLSDSIFVFEEYPITSVSVRIRKEKLTSETMLNLSLYIIT*
Ga0182162_10964081	3300015310	Switchgrass Phyllosphere	MDASESDFENFSLSDSIFVFEEYLITSVSVRIRKEKVTSETILNLSLY
Ga0182162_11025571	3300015310	Switchgrass Phyllosphere	MDASEFDFKNFSLSDFIFVFEEYLITSVSVRIRKEKVTSETILNLSLYLLLN
Ga0182182_10630591	3300015311	Switchgrass Phyllosphere	MDASESDFKNFSLSDSIFVFEKYPITSVSVRIRKEKVTSETMLNLSLY
Ga0182168_10298051	3300015312	Switchgrass Phyllosphere	MDISESNFENFSLSDSIFVFEEYPIASVSIRIRKEKVTSETILN
Ga0182168_10381021	3300015312	Switchgrass Phyllosphere	MDVSESDFENSSLSDSIFVFEEYPIISVFVRIRKEKVTSETILNLSLYLIT*
Ga0182168_11327031	3300015312	Switchgrass Phyllosphere	MDASEFDFKNFSLSDSIFVFEEYPITSVSVRIRKEKVTSETILNLSLYILLNDVHYLNYLES*
Ga0182120_10984341	3300015315	Switchgrass Phyllosphere	MDASEFDFKNFSLSDSIFVFEEYPITSVFVRIRKEKITSEIILNLSLYLLLNDVHYLNYLES*
Ga0182121_10072141	3300015316	Switchgrass Phyllosphere	MDASEFDFKNFSLSDSIFVFEEYPITSVSVCIRKEKVTSETILNLFLYLIT*
Ga0182121_10267721	3300015316	Switchgrass Phyllosphere	MDASEIDFENFSLSDSILVFEEYPITSVSVRIRKEKMTSETILNLSLYLIT*
Ga0182121_11101301	3300015316	Switchgrass Phyllosphere	MDASEFDFKNFSLSDSIFVFEEYPITSVSIHIRKEKMTSETILNLSLYLLLNDVHYLNYLES
Ga0182136_10625391	3300015317	Switchgrass Phyllosphere	MDASESDFENFSLSDSIFIFEKYPITSVSVRIRKEKVTSETILNLSLYLIT*
Ga0182148_10611182	3300015325	Switchgrass Phyllosphere	MDASEFDFKNFSLSDSVFVFEEYPITSVSVRIRKEKMTSETILNLSLYILLNDVHYLNYLES*
Ga0182148_11232081	3300015325	Switchgrass Phyllosphere	MDAFESDFENFSLSDFIFVFEEYPITSVSVSIRKEKVTSEIILNL
Ga0182166_10598511	3300015326	Switchgrass Phyllosphere	MDASEFDFKNFSLSDSIFVFEEYPITSVSVRIRKEKVTSETILNLSLYLLFNDVHYLNYLES*
Ga0182153_11032311	3300015328	Switchgrass Phyllosphere	MVASEFDFKNFSLSDFIFVFEEYPITSVSIRIRKEKITSETML
Ga0182153_11100981	3300015328	Switchgrass Phyllosphere	MDASEFDFKNFSLSDSIFVFEEYPITSVSVRIRKEKMTSETI
Ga0182153_11148331	3300015328	Switchgrass Phyllosphere	MDAFESDFENFSLSDFIFVFEEYPITSVSVRIRKEKMTSETILNLSLSLLLM
Ga0182135_10606461	3300015329	Switchgrass Phyllosphere	MDASEFDFKNFSLSDFIFVFEEYPITSVSVRIRKERVTSETILNLSLYLLLNDVHYLNYLES*
Ga0182135_11214941	3300015329	Switchgrass Phyllosphere	MDISESNFENFSLSDSIFVFEEYPIASVSIRIRKEKVTSETILNLPLYLIN*
Ga0182135_11527051	3300015329	Switchgrass Phyllosphere	MDVSESDFENFSLSDSIFVFEKYPITSVSVRIRKEKVTSEIILNLSLYLIT
Ga0182152_11252862	3300015330	Switchgrass Phyllosphere	MDASESDFKNFSLSDSIFVFEEYPITSVSVRIRKEKVTSETILNLSLYLI
Ga0182131_11261452	3300015331	Switchgrass Phyllosphere	MDASESDFDNFSLSDSIFVFEKYPITSISVCIRKKKLTIFWEPKEKVTSETILNLSLYLI
Ga0182131_11530032	3300015331	Switchgrass Phyllosphere	MDASESDFENFSLSDSIFVFEGYPITSVFIRIRKEKVTSETILNLSLYLIT*
Ga0182117_10302381	3300015332	Switchgrass Phyllosphere	MDASESDFENFSLSDFIFVFEEYPITSAFVRIRKEKVTSETILNLSLY
Ga0182117_10742131	3300015332	Switchgrass Phyllosphere	MDAFESDFENFSLSDFIFVFEEYPITSVSVRIHKEKMASETSLNLY
Ga0182117_11180631	3300015332	Switchgrass Phyllosphere	MDVSESDFENFSLSDSIFVFEKYPITSVFVCIRKEKVTSETILNLSL
Ga0182117_11666721	3300015332	Switchgrass Phyllosphere	MDASEPDFKNFSLSDSVFVFEEYPITSVSVRTRKEKMTSETILNLFL
Ga0182147_11195642	3300015333	Switchgrass Phyllosphere	MDASEFDFKNFSLSDSIFVFEEYPITSVSVRIRKEKMTSKTILNLSLYLLLNDVHYLNYLEN*
Ga0182147_11326481	3300015333	Switchgrass Phyllosphere	MDASEFDFKNFSLSDSIFVFEENPITSVSVHIRKEKMTSETILNLSLY
Ga0182132_10598951	3300015334	Switchgrass Phyllosphere	MDASKFDFENFSLSDSIFVFEEYTFTSVSVLIRKEKVTNEKILN
Ga0182116_11025031	3300015335	Switchgrass Phyllosphere	MDVSESDFENFSQSDSVFVFEKYPITSISVRIRKEKVTSETILNLSLYLIN*
Ga0182150_10457772	3300015336	Switchgrass Phyllosphere	MDAFEFDFKNFSLSDSIFVFEEYPITSVSVRIRKEKMTSETILNLSLYLIT*
Ga0182150_11377821	3300015336	Switchgrass Phyllosphere	MDAFESDFENFSLSDSIFAFEEYPIASVYIRIRKEKVTSETILNLSLYLIT*
Ga0182151_11289801	3300015337	Switchgrass Phyllosphere	MDVSESDFENFSLSDFIFVFEEYPITFVSVRIRKEKVTSKIILNLSLYLIT*
Ga0182151_11542771	3300015337	Switchgrass Phyllosphere	MDTSEFDFKNFSLSDFIFVFEEYPITSVSVRIRKEKVTSETILNLSLYLLLNDVHYLNYL
Ga0182137_10538501	3300015338	Switchgrass Phyllosphere	MDASESDFENFSLSDSIFVFEEYPITSVSVRIRKVEVTSETILNLSLYLIT
Ga0182137_10835831	3300015338	Switchgrass Phyllosphere	MDASESDFENFSLSDSIFLFEEYSITSVSVRIRKEKVTSETILNLSLYLIT*
Ga0182137_11250691	3300015338	Switchgrass Phyllosphere	MDASEFDFKNFSLSDSIFVFEEYPITSVSVRIRKEKVTSETILNLFLYLIT*
Ga0182133_10621441	3300015340	Switchgrass Phyllosphere	MDASEFNFKNFSLSDSIFVFKEYPITSVSVRIRKKVTSETILNLS
Ga0182115_11357411	3300015348	Switchgrass Phyllosphere	MDASEFDFENFSLSDSIFVFEEYPITSVSVRIRKEKVTSETILNLS
Ga0182115_12273381	3300015348	Switchgrass Phyllosphere	MDAFEFDFKNFSLSDFIFVFEEYLITSVSVRIRKEKVTSETILNLSLYLLLNDVHYLNYLES*
Ga0182115_12489871	3300015348	Switchgrass Phyllosphere	MDASEFDFKNFSLSNSIFVFEKYPITSVSVCIRKEKVTSETILNLFLYLIT
Ga0182185_10604351	3300015349	Switchgrass Phyllosphere	MDASESDFENFSLSDSIFVFEEYPITSVSVRIRKVKVTSETI
Ga0182185_10732341	3300015349	Switchgrass Phyllosphere	MDASEFDFKNFSLSDSIFVFEEYPITSVSIRIRKEKMTSETILNLSLYLLLNDVHYLNYLES*
Ga0182185_12573231	3300015349	Switchgrass Phyllosphere	MDISESDFENFSISDSIFVFEEYPIASVSIRIRKEKVTSETILNLPLYLIN*
Ga0182163_11674611	3300015350	Switchgrass Phyllosphere	MDASESNFENFSLSDSIFVFEKYPITSVSVRIRKEKVTSETILNLSLYL
Ga0182169_11134042	3300015352	Switchgrass Phyllosphere	MDASESDFENFSLSDFIFVFEEYPITSVFVRIRKEKVTSETILNLSLY
Ga0182169_11334221	3300015352	Switchgrass Phyllosphere	MNVSESDFENSSLSDSIFVFEKYPITFVSVRIRKEKMTSETILNLSLYLIT*
Ga0182169_11931311	3300015352	Switchgrass Phyllosphere	MDASEFDFKNFSLSDSIFVFEEYPITSVSVHIHKEKVTSETILNLSLYLLLND
Ga0182179_11546082	3300015353	Switchgrass Phyllosphere	MDASESDFENFSLSDFIFVFEEYPITFVSIRIRKEKVTSKTILN
Ga0182179_11938941	3300015353	Switchgrass Phyllosphere	MDASEFDFKNFSLSDFIFVFEEYPITSVSVRIRQEKVTSEKILNLSLYL
Ga0182179_12406841	3300015353	Switchgrass Phyllosphere	MDAYKSDFENFSLSDSIFAFEEYPITSVSVRIRKKKVTSETILNLSLYLIN*
Ga0182167_11043602	3300015354	Switchgrass Phyllosphere	MDAFESDFENFSLFDSIFVFEEYPITSVFVRIRKEKMTSETILYLFLYLIT*
Ga0182167_11601091	3300015354	Switchgrass Phyllosphere	MDAPEPDYKNFSLSDSIFVFEEYPITSVSVRICKEKVTSETMLNLSLFLIT*
Ga0182199_11282431	3300017412	Switchgrass Phyllosphere	MDASESDFEKFSLSDSIFVFEEYPITSVSVRIRKEKVTSETILNLSLYLIT
Ga0182199_12024751	3300017412	Switchgrass Phyllosphere	MDISESDFENFSLSDSIFVFEEYLITSVSVRIRKEKVTSETILNSSLYLI
Ga0182195_10668741	3300017414	Switchgrass Phyllosphere	MDASEFDFKNFSLSDSIFVFEEYPITSVSVRIRKEKVTSETILNLSLYLLLNDVHYLNYLEI
Ga0182201_10663762	3300017422	Switchgrass Phyllosphere	MDASESDFENFSLSDSIFVFEEYPITSVSVRIRKEKVTNETILNLSLYLIT
Ga0182196_10791341	3300017432	Switchgrass Phyllosphere	MDASEFDFKNFSLSDSIFVFEEYPIISVSVRIRKEKVTSETILNLSLYLLLNDVHYLNYLES
Ga0182194_11570901	3300017435	Switchgrass Phyllosphere	MDASESDFENFSLSDSKFVFEKYPITFVSVRIRKEKVTSETILNLSLYLII
Ga0182200_10156172	3300017439	Switchgrass Phyllosphere	MDISESNFENFSLSDSIFVFEEYPIASVSIRIRKEKVTSETILNLPLYLIN
Ga0182214_11382171	3300017440	Switchgrass Phyllosphere	MNASESDLENFSLSDSIFVFEEYPITSVSVRVRKEKMTSETILNLSLYLIT
Ga0182198_10822641	3300017445	Switchgrass Phyllosphere	MNASEFDFKNFSLSDSIFVFEENPITSVSVHIRKEKVTSETILNLSLYLLLNDVHYLNYL
Ga0182215_10681162	3300017447	Switchgrass Phyllosphere	MDASESNFENFFLSNSIFVFEEYPITSVSVRIRKEKVTSETILNLSLYLII
Ga0182210_10662541	3300017692	Switchgrass Phyllosphere	MDASEFDFKNFSLSDFIFVFEEYPITSVSVRIRKEKVTSETILNLSLYILLNDVHYLNYLES
Ga0182216_11016232	3300017693	Switchgrass Phyllosphere	MDAFESDFENFSLSDSIFVFEEYPITSVSVRIRKEKVTSETILNLSLYLIT
Ga0182211_10422752	3300017694	Switchgrass Phyllosphere	MDASEFDFKNFSLSDSVFVFEEYPITSVSVRIRKEKMTSETILNLSLYLLLNDVHYL
Ga0182211_11551761	3300017694	Switchgrass Phyllosphere	MDVSESDFEKFSLSDSIFVFEKYPITSVSVRIRKEKVTSETILNLSLYLIN
Ga0182119_1041981	3300020031	Switchgrass Phyllosphere	MDASEFDFKNFSLSDSIFVFEEYPITSVSVRIRKEKVTSETILNLSLYLLLNDVHYLNYLES
Ga0207650_119217721	3300025925	Switchgrass Rhizosphere	MDASEFDFKNFSLSDSIFVLEEYPITSVSVRIRKEKVTSETILNLSLFLLLNDVHYLNYLES
Ga0268352_10136182	3300028057	Phyllosphere	MDASESDFKNFSLSDSIFVFEKYPITSVSVRIRKEKVTSETILNLSLYLLLNDVHYLNYLES
Ga0268342_10072471	3300028062	Phyllosphere	MDASESDFKNFSLSDSIFVFEEYPITSVSVRIRKEKVTSETILNLSLYLLLNDVHYLNYLES
Ga0268350_10501471	3300028063	Phyllosphere	MDASEFDFKNFSLSDSIFVFEEYPIISVSVRIRKEKVTSETILNLLLYLLLNDVHYLNYLES
Ga0268301_1024541	3300028465	Phyllosphere	MDASEFDFKNFSLSDSIFVFEEYPITSVSVRIRKKKVTSETILNLSLYLLLNDVHYLNYLES
Ga0268337_10028101	3300028469	Phyllosphere	MDASESDFENFSLSDSIFVFEEYPITSVSVRIRKEKVTSETILNLSLYLLLNDVHYLNYLES
Ga0268315_10104072	3300028472	Phyllosphere	MDASESDFENFSLSDSIFVFEEYPITSVSVRIRKEKVTSETILNLSLYLIT
Ga0268319_10205271	3300028473	Phyllosphere	MDASEFDFKNFSLSDSIFVFEQYPITSVSVRIRKEKVTSETILNLSLYLLLNDVHYLNYLES
Ga0268327_10138172	3300028475	Phyllosphere	MDASESDFKNFSLSDSIFVFEEYPITSVSVRIRKEKVTSETILNLSL
Ga0214490_10880792	3300032502	Switchgrass Phyllosphere	MDASEFDFKNFSLSDSIFVFEEYPITSVSVRVRKKKVTSETILNLSLYLLLNDV
Ga0321338_10511101	3300032593	Switchgrass Phyllosphere	MDASEFDFKNFSLSDSIFVFEEYPITSVSVRIRKEKVTSETILNLSLYLLLND
Ga0214497_10740431	3300032689	Switchgrass Phyllosphere	MDASESEFENFSLSDSVSVFEEYPITSVSVRIRKEKVTSETILNLSLYLLLNDVYYLNYLES
Ga0214485_10088432	3300032698	Switchgrass Phyllosphere	MDASEFDFMNFSLSDSIFVFEEYPITSVSVRIRKEKVTSETILNLSLYLLLNDVHYLNNLES
Ga0314735_11107411	3300032824	Switchgrass Phyllosphere	MDASESDFENFSLSDSIFVFEEYPITFVFVRIRKEKVTSETILYLSLYLIT
Ga0314750_11110131	3300032914	Switchgrass Phyllosphere	MDASEFDFKNFSLSDSIFVFEEYPITSVSVRIRKEKVTSETILNLYLYLLLND
Ga0314755_10493011	3300033538	Switchgrass Phyllosphere	MDASEFDFKNFSLSDSIFVFEEYPITFVSVRIRKEKVTSETILNLYLYLLLNDVHYLNYLES

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F083573

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences