Metagenome / Metatranscriptome Family F083560

Overview

Basic Information

• Family ID: F083560
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 112
• Average Sequence Length: 48 residues
• Representative Sequence: LHWRDVLTGVRHAGLRPLLSELTRRLPVALLIPEDIYLAEQERLAGESAR
• Number of Associated Samples: 91
• Number of Associated Scaffolds: 112

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 0.00 %
• % of genes near scaffold ends (potentially truncated): 100.00 %
• % of genes from short scaffolds (< 2000 bps): 89.29 %
• Associated GOLD sequencing projects: 88
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (82.143 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (46.429 % of family members)
• Environment Ontology (ENVO): Unclassified (47.321 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (47.321 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 44.87%
  β-sheet: 0.00%
  Coil/Unstructured: 55.13%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF02922	CBM_48	50.89
PF00128	Alpha-amylase	25.00
PF11941	DUF3459	9.82
PF00535	Glycos_transf_2	0.89
PF04030	ALO	0.89
PF01494	FAD_binding_3	0.89
PF06781	CrgA	0.89
PF01565	FAD_binding_4	0.89

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG0296	1,4-alpha-glucan branching enzyme	Carbohydrate transport and metabolism [G]	25.00
COG0366	Glycosidase/amylase (phosphorylase)	Carbohydrate transport and metabolism [G]	25.00
COG1523	Pullulanase/glycogen debranching enzyme	Carbohydrate transport and metabolism [G]	25.00
COG3280	Maltooligosyltrehalose synthase	Carbohydrate transport and metabolism [G]	25.00
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	1.79
COG0277	FAD/FMN-containing lactate dehydrogenase/glycolate oxidase	Energy production and conversion [C]	0.89
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.89
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	0.89
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	0.89

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	82.14 %
Unclassified	root	N/A	17.86 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	82.14 %
Unclassified	root	N/A	17.86 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	82.14 %
Unclassified	root	N/A	17.86 %

Level 4

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	82.14 %
Unclassified	root	N/A	17.86 %

Level 5

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	82.14 %
Unclassified	root	N/A	17.86 %

Level 6

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	78.57 %
Unclassified	root	N/A	17.86 %

Level 7

Name	Rank	Taxonomy	Distribution
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	61.61 %
Unclassified	root	N/A	17.86 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	10.71 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.89 %

Level 8

Name	Rank	Taxonomy	Distribution
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	58.93 %
Unclassified	root	N/A	17.86 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	10.71 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.89 %

Level 9

Name	Rank	Taxonomy	Distribution
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	58.93 %
Unclassified	root	N/A	17.86 %
Clavibacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Clavibacter	10.71 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	0.89 %

Level 10

Name	Rank	Taxonomy	Distribution
unclassified Actinomadura	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura	57.14 %
Unclassified	root	N/A	17.86 %
Clavibacter michiganensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Clavibacter → Clavibacter michiganensis	10.71 %
Mycobacterium tuberculosis complex	species group	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex	0.89 %

Level 11

Name	Rank	Taxonomy	Distribution
Actinomadura sp. J1-007	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	57.14 %
Unclassified	root	N/A	17.86 %
Clavibacter michiganensis subsp. michiganensis	subspecies	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Clavibacter → Clavibacter michiganensis → Clavibacter michiganensis subsp. michiganensis	10.71 %
Mycobacterium tuberculosis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	0.89 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300001356|JGI12269J14319_10256066	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	649
3300005541|Ga0070733_11187296	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	511
3300005591|Ga0070761_10929050	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	550
3300005602|Ga0070762_10308065	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1000
3300005921|Ga0070766_10335459	Not Available	978
3300005921|Ga0070766_10700603	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	685
3300005921|Ga0070766_11166785	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	532
3300009683|Ga0116224_10015536	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3772
3300009698|Ga0116216_10185755	Not Available	1276
3300009700|Ga0116217_10077302	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2320
3300009824|Ga0116219_10019983	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4138
3300010361|Ga0126378_12650363	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	573
3300010866|Ga0126344_1203516	Not Available	1630
3300010880|Ga0126350_10784772	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	533
3300010880|Ga0126350_11042254	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	506
3300010880|Ga0126350_11604496	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	647
3300016294|Ga0182041_11113723	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	717
3300016341|Ga0182035_10627008	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	931
3300016357|Ga0182032_10443192	Not Available	1058
3300016357|Ga0182032_11616479	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	564
3300016422|Ga0182039_11695376	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	578
3300017924|Ga0187820_1196397	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	628
3300017928|Ga0187806_1328676	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	544
3300017933|Ga0187801_10420185	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	558
3300017955|Ga0187817_11007388	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	534
3300017961|Ga0187778_11099231	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	554
3300017970|Ga0187783_11286957	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	527
3300017972|Ga0187781_10532753	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	844
3300017974|Ga0187777_10789380	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	678
3300017975|Ga0187782_10340297	Not Available	1135
3300018001|Ga0187815_10188498	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	873
3300018001|Ga0187815_10394050	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	589
3300018062|Ga0187784_10170485	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Clavibacter → Clavibacter michiganensis → Clavibacter michiganensis subsp. michiganensis	1778
3300018062|Ga0187784_11148932	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	616
3300018090|Ga0187770_10936458	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	696
3300020583|Ga0210401_10247643	Not Available	1641
3300020583|Ga0210401_11196244	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	618
3300021401|Ga0210393_10489475	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	1004
3300021403|Ga0210397_10180298	Not Available	1497
3300021403|Ga0210397_11548884	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	514
3300021407|Ga0210383_11089039	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	675
3300021439|Ga0213879_10156392	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	664
3300021476|Ga0187846_10203408	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	829
3300021479|Ga0210410_11114830	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	679
3300021560|Ga0126371_13729539	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	514
3300025634|Ga0208589_1106080	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	659
3300026515|Ga0257158_1076817	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	642
3300027029|Ga0208731_1001420	Not Available	1920
3300027497|Ga0208199_1087327	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	648
3300027701|Ga0209447_10143263	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	656
3300028742|Ga0302220_10047802	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Clavibacter → Clavibacter michiganensis → Clavibacter michiganensis subsp. michiganensis	1811
3300028773|Ga0302234_10055455	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Clavibacter → Clavibacter michiganensis → Clavibacter michiganensis subsp. michiganensis	1785
3300029999|Ga0311339_10002191	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	33937
3300029999|Ga0311339_10067474	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4640
3300029999|Ga0311339_10659496	Not Available	1030
3300030524|Ga0311357_11043428	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	716
3300030524|Ga0311357_11183932	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	662
3300030707|Ga0310038_10014316	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5131
3300031234|Ga0302325_13416400	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	500
3300031525|Ga0302326_11637262	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	853
3300031543|Ga0318516_10296161	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	935
3300031546|Ga0318538_10282776	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	893
3300031546|Ga0318538_10792672	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	514
3300031549|Ga0318571_10045548	Not Available	1287
3300031564|Ga0318573_10053557	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1977
3300031572|Ga0318515_10322550	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	828
3300031681|Ga0318572_10644811	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	631
3300031682|Ga0318560_10273283	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	909
3300031708|Ga0310686_100980241	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	814
3300031708|Ga0310686_109775715	Not Available	1690
3300031719|Ga0306917_10264219	Not Available	1322
3300031724|Ga0318500_10057697	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Clavibacter → Clavibacter michiganensis → Clavibacter michiganensis subsp. michiganensis	1669
3300031736|Ga0318501_10071240	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Clavibacter → Clavibacter michiganensis → Clavibacter michiganensis subsp. michiganensis	1678
3300031736|Ga0318501_10357594	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	785
3300031751|Ga0318494_10021989	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	3184
3300031751|Ga0318494_10340375	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	867
3300031753|Ga0307477_10885455	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	590
3300031764|Ga0318535_10007732	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3682
3300031777|Ga0318543_10191886	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	906
3300031777|Ga0318543_10267553	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	763
3300031779|Ga0318566_10077003	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Clavibacter → Clavibacter michiganensis → Clavibacter michiganensis subsp. michiganensis	1617
3300031779|Ga0318566_10635018	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	519
3300031782|Ga0318552_10105868	Not Available	1391
3300031792|Ga0318529_10197003	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	934
3300031792|Ga0318529_10410822	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	630
3300031793|Ga0318548_10094832	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Clavibacter → Clavibacter michiganensis → Clavibacter michiganensis subsp. michiganensis	1423
3300031794|Ga0318503_10308049	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	514
3300031795|Ga0318557_10411508	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	622
3300031798|Ga0318523_10047769	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2002
3300031799|Ga0318565_10045475	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Clavibacter → Clavibacter michiganensis → Clavibacter michiganensis subsp. michiganensis	2025
3300031821|Ga0318567_10270218	Not Available	956
3300031831|Ga0318564_10317068	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	687
3300031835|Ga0318517_10467616	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	569
3300031897|Ga0318520_10660955	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	652
3300031910|Ga0306923_10347937	Not Available	1690
3300031959|Ga0318530_10040633	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Clavibacter → Clavibacter michiganensis → Clavibacter michiganensis subsp. michiganensis	1714
3300032009|Ga0318563_10094620	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Clavibacter → Clavibacter michiganensis → Clavibacter michiganensis subsp. michiganensis	1575
3300032009|Ga0318563_10110442	Not Available	1459
3300032010|Ga0318569_10354976	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	683
3300032044|Ga0318558_10059157	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Clavibacter → Clavibacter michiganensis → Clavibacter michiganensis subsp. michiganensis	1716
3300032052|Ga0318506_10298213	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	715
3300032059|Ga0318533_10777376	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	703
3300032064|Ga0318510_10058562	Not Available	1383
3300032065|Ga0318513_10019331	Not Available	2824
3300032066|Ga0318514_10292481	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	860
3300032068|Ga0318553_10260005	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	907
3300032076|Ga0306924_10249734	Not Available	2037
3300032076|Ga0306924_11957431	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	606
3300032089|Ga0318525_10101863	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Clavibacter → Clavibacter michiganensis → Clavibacter michiganensis subsp. michiganensis	1463
3300032090|Ga0318518_10139385	Not Available	1228
3300033289|Ga0310914_11427785	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	595
3300034163|Ga0370515_0414914	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. J1-007	568

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Class

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	93.75%
Aquatic	Environmental → Aquatic	6.25%

Category

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	84.82%
Peat	Environmental → Terrestrial → Peat	8.04%
Freshwater	Environmental → Aquatic → Freshwater	6.25%
Cave	Environmental → Terrestrial → Cave	0.89%

Type

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	71.43%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.04%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	8.04%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	6.25%
Loam	Environmental → Terrestrial → Soil → Loam	5.36%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.89%

Subtype

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	55.36%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.18%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	8.04%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	8.04%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	5.36%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.36%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.89%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.89%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.89%

Habitat

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	46.43%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.04%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	8.04%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	7.14%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	6.25%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	5.36%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	4.46%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	3.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.79%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.79%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.89%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.89%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.89%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.89%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.89%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.89%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.89%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental
3300010866	Boreal forest soil eukaryotic communities from Alaska, USA - C1-3 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental
3300018001	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5	Environmental
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental
3300021439	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R03	Environmental
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental
3300025634	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-2 shallow-092012 (SPAdes)	Environmental
3300026515	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-A	Environmental
3300027029	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF045 (SPAdes)	Environmental
3300027497	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG (SPAdes)	Environmental
3300027701	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)	Environmental
3300028742	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_3	Environmental
3300028773	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_2	Environmental
3300029999	I_Palsa_E3 coassembly	Environmental
3300030524	II_Palsa_N3 coassembly	Environmental
3300030707	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)	Environmental
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental
3300034163	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12269J14319_102560661	3300001356	Peatlands Soil	DTVLPLPELHWWDVLTGTRHAGLRPPLSELTWRLPVALLIPERIYLAGHDQLADGSLA*
Ga0070733_111872962	3300005541	Surface Soil	PELHWWDVLTGTRHAGFRPPLSELTWRLPVALLIPERIYLAGQDQLDDGGRV*
Ga0070761_109290502	3300005591	Soil	RHAGLRPPLAELTRRLPVALLIPEEIYLAEQERLAGESAR*
Ga0070762_103080651	3300005602	Soil	LPLPDVHWRDVLTGVRHAGTRPPLAELTRRLPVALLIPDKIYAQEQDRRSGRIAR*
Ga0070766_103354591	3300005921	Soil	LRPPLAELTRRLPVALLIPEEIYLAEQERLAGESAR*
Ga0070766_107006032	3300005921	Soil	WRDVLTGTRHAGLRPPLAELTRRLPVALLIPEEIYLAEQEALAGESTR*
Ga0070766_111667852	3300005921	Soil	WRDVLTGTRHAGLRPPLAELTRRLPVALLIPEEIYLAEQERLADESAR*
Ga0116224_100155364	3300009683	Peatlands Soil	LPLPELHWRDVLTGVRHAGLRPLLSELTRRLPVALLIPEDVFLAEQERLAGQSAR*
Ga0116216_101857551	3300009698	Peatlands Soil	LHWRDVLTGVRHAGLRPLLSELTRRLPVALLIPEDIYLAEQERLAGESAR*
Ga0116217_100773023	3300009700	Peatlands Soil	LPLPELHWRDVLTGVRHAGLRPLLSELTRRLPVALLIPEDIYLAEQERLAGESAR*
Ga0116219_100199831	3300009824	Peatlands Soil	VRHAGLRPLLSELTRRLPVALLIPEDVFLAEQERLAGQSAR*
Ga0126378_126503631	3300010361	Tropical Forest Soil	TGTRHAGLRPLLSELTWRLPVALLIPERVYLAEHDQTAGEGPA*
Ga0126344_12035162	3300010866	Boreal Forest Soil	GTRHAGLRPPLAELTWRLPVALLIPEETYLAEQERQAGESTR*
Ga0126350_107847722	3300010880	Boreal Forest Soil	VLPLPELHWQDVLTGVRHAGLRPPLAELTRRLPVALLIPEETYLAEQERRAR*
Ga0126350_110422541	3300010880	Boreal Forest Soil	HAGLRPPLAELTWRLPVALLVPERIYISERDRTAPENPR*
Ga0126350_116044961	3300010880	Boreal Forest Soil	VLPLPQLHWRDVLTGARHAGLRPPLAELTRRLPVALLIPEEIYLAEHERQAR*
Ga0182041_111137232	3300016294	Soil	LPGLHWRDVLTGIRHAGLRPQLAELTRRLPVALLIPEEIYLAEQARPSGEGGR
Ga0182035_106270081	3300016341	Soil	LHWRDVLTGVRHAGLRPLLSELTWRLPAALLIPEEIYLAERARLAGGNAR
Ga0182032_104431922	3300016357	Soil	WRDVLTGIRHAGLRPPLAELTRRLPVALLIPEEIYLAEQARLSGESAR
Ga0182032_116164792	3300016357	Soil	PELHWRDVLTGVRHAGLRPLLSELTWRLPVALLIPEEIYLAERARLAGGNAR
Ga0182039_116953762	3300016422	Soil	RPLLSDLTRQLPVALLIPEEIYRAEQERRARGNAR
Ga0187820_11963972	3300017924	Freshwater Sediment	LPLPELHWRDVLTGVRHAGLRPLLSDLTRRLPVALLIPEETYRAEQERLAGGNAR
Ga0187806_13286762	3300017928	Freshwater Sediment	VLPLPELHWWDVLTGTRHAGFRPPVSELTWRLPVALLIPERIYLAGQDQLADGSLG
Ga0187801_104201851	3300017933	Freshwater Sediment	DVLTGVRHAGLRPLLSELTRRLPVALLIPEEIYLAEHARLAGQSAR
Ga0187817_110073882	3300017955	Freshwater Sediment	ADTVLPLPGLHWRDVLTGVRHAGLRPLLSELTRRLPVALLIPEDIYLAEQERLAGENDR
Ga0187778_110992312	3300017961	Tropical Peatland	AGLRPLLADLTRRLPVALLIPERIYLAEQDRPGDGSAR
Ga0187783_112869571	3300017970	Tropical Peatland	RPLLSELTWRLPVALLIPERIYLDEQEQLADGGPA
Ga0187781_105327531	3300017972	Tropical Peatland	TVLPLPEVHWRDVLTGARHAGLRPLLSELTRRLPVALLIPERVYLSEQEWFTDGSAR
Ga0187777_107893801	3300017974	Tropical Peatland	LPLPELHWRDVLTGARHAGLRPLLSELTRRLPVALLIPDRIYLEEQERLRDGRAR
Ga0187782_103402972	3300017975	Tropical Peatland	ADTVLPLPELHWWDVLTGTRHAGLRPPLSELTWRLPVALLIPERIYLGGQDQPADGGLA
Ga0187815_101884981	3300018001	Freshwater Sediment	WWDVLTGTRHAGLRPPLSELTWRLPVALLIPERVYLAGQDQLADGSMA
Ga0187815_103940501	3300018001	Freshwater Sediment	VLTGVRHAGLRPLLSELTRRLPVALLVPEDIYLAEQERLAGENDR
Ga0187784_101704852	3300018062	Tropical Peatland	VLPLPEVHWRDVLTGARHAGLCPLLSELTVRLPVALLIPDRVYLEEQERLMDGRAR
Ga0187784_111489322	3300018062	Tropical Peatland	DTVLPLPELHWWDVLTGTRHAGLRPPLSELTRRLPVALLIPERIYLAGQDQLADGSLA
Ga0187770_109364581	3300018090	Tropical Peatland	VHWRDVLTGARHAGLCPLLSELTRRLPVALLIPERVFLSEQEGLTDGGPR
Ga0210401_102476431	3300020583	Soil	LTGTRHAGLRPPLAELTRRLPVALLIPEEIYLAEQERLAGESAR
Ga0210401_111962442	3300020583	Soil	AGLRPPLAELTRRLPVALLVPEEIYLAEQERLAGESVR
Ga0210393_104894752	3300021401	Soil	LPLPGLHWRDMLTGTRHAGLRPPLAELTRRLPVALLIPEEIYLAEQERLAGESTR
Ga0210397_101802982	3300021403	Soil	RDVLTGTRHAGLRPPLAELTWRLPVALLVPEEIYLAEQEQLAGESAR
Ga0210397_115488842	3300021403	Soil	DVLTGIRHAGLRPPLAELTRRLPVALLIPEEIYLAEQERLAGESAR
Ga0210383_110890391	3300021407	Soil	PLPELHWWDVLTGTRHAGFRPPLSELTWRLPVALLIPERIYLTGQDQLADGDLA
Ga0213879_101563922	3300021439	Bulk Soil	PLPRLHWRDVLTGTRHAGFSPLMSELTRRLPVALLIPERVYLEEQERLAGGNGR
Ga0187846_102034081	3300021476	Biofilm	WDVLTGTRHAGLRPPMSELTWRLPVALLIPERIYLAQQDLAGEDPA
Ga0210410_111148302	3300021479	Soil	HAGLRPPLAELTWRLPVALLIPEEIYLAEQERLGGQSAR
Ga0126371_137295392	3300021560	Tropical Forest Soil	GLRPPLSELTRRLPVALLIPEEIYLAEQERLSDESTR
Ga0208589_11060801	3300025634	Arctic Peat Soil	RDVLTGVRHAGLRPPLSELTWRLPVALLIPERIYAAGQDRDGAGSAR
Ga0257158_10768171	3300026515	Soil	VLPLPGLHWRDVLTGTRHAGLRPPLAELTWRLPVALLIPEEIYLAEQERLAGENAR
Ga0208731_10014202	3300027029	Forest Soil	HAGLRPPLAELTRRLPVALLIPEEIYLAEQEQLAGESAR
Ga0208199_10873271	3300027497	Peatlands Soil	TGVRHAGLRPLLSELTRRLPVALLIPEDIYLAEQERLAGESAR
Ga0209447_101432631	3300027701	Bog Forest Soil	AGLRPPLAELTWRLPVALLIPEEIYRAEQERLAGENAR
Ga0302220_100478022	3300028742	Palsa	TGVRHAGTRPPLAELTRRLPVALLIPDQIYAQEQDRRSGRTAR
Ga0302234_100554552	3300028773	Palsa	TGVRHAGLRPPLDELTRRLPVALLIPDRVYGEKQGRAASRSGR
Ga0311339_1000219130	3300029999	Palsa	VRHAGLRPPLAELTRRLPVALLIPDQIYAQEHDRRPGGSAR
Ga0311339_100674741	3300029999	Palsa	LHWRDVLTGVRHAGLRPPLAELTRRLPVALLIPDQIYAQERDRRPGGSAR
Ga0311339_106594961	3300029999	Palsa	LTGVRHAGTRPPLAELTRRLPVALLIPDQIYAQEQDRRSGRSAW
Ga0311357_110434281	3300030524	Palsa	HWRDVLTGVRHAGTRPPLAELTRRLPVALLIPDQIYAQEQDRRSGRSAR
Ga0311357_111839322	3300030524	Palsa	AGTRPPLAELTRRLPVALLIPDQIYAQEQDRRSGRSAR
Ga0310038_100143165	3300030707	Peatlands Soil	LTGVRHAGLRPLLSELTRRLPVALLIPEDIYLAEQERLAGESAR
Ga0302325_134164002	3300031234	Palsa	LPLPELHWRDVLTGARHAGLRPLLSDLTRYLPVALLIPEEIYLAEQERLAGQSGR
Ga0302326_116372621	3300031525	Palsa	LPLPELHWRDVLTGARHAGLRPLLSDLTRYLPVALLIPEEIYLAEQERLAGQSSR
Ga0318516_102961611	3300031543	Soil	VLPLPELHWRDVLTGVRHAGLRPPLSELTRRLPVALLIPEEIYLAEQDRLSGESTR
Ga0318538_102827761	3300031546	Soil	LHWRDVLTGVRHAGLRPLLSELTWRLPVALLIPEEIYLAERARLAGGNAR
Ga0318538_107926722	3300031546	Soil	VLPLPELHWHDVLTGARHAGLRPLLSELTRRLPVALLIPERVYLAEQERLTDGSSR
Ga0318571_100455482	3300031549	Soil	PLPELHWRDALTGARHAGLRPLLSELTRRLPVALLIPDRVYLSEQERLSDGRAR
Ga0318573_100535573	3300031564	Soil	RHAGLRPLLSDLTRRLPVALLIPEEIYRAEQERLASGNGR
Ga0318515_103225501	3300031572	Soil	ADTVLPLPEMHWRDVLTGVRHAGLRPLLSELTRRLPVALLIPEEIYLAEQEQLSGERAR
Ga0318572_106448112	3300031681	Soil	VLPLPDLHWRDVLTGARHAGLRPLLSELTRRLPVALLIPDRVFLSEREQLTDGAAR
Ga0318560_102732832	3300031682	Soil	TGVRHAGLRPLLSELTWRLPVALLIPEEIYLAERARLAGGNAR
Ga0310686_1009802411	3300031708	Soil	TRHAGLRPPLAELTWRLPVALLIPEEIYLAEQERLAGENAR
Ga0310686_1097757152	3300031708	Soil	RDVLTGTRHAGLRPLMSELTRRLPVALLIPERVYLQEQDRLAGGNAG
Ga0306917_102642192	3300031719	Soil	LHWHDVLTGARHAGLRPLLSELTRRLPVALLIPERVYLAEQERLTDGSSR
Ga0318500_100576971	3300031724	Soil	LTGIRHAGLRPPLAELTRRLPVALLIPEEIYLAEQARLSGESAR
Ga0318501_100712401	3300031736	Soil	PELHWRDVLTGIRHAGLRPPLAELTRRLPVALLIPEEIYLAEQARLSGESAR
Ga0318501_103575942	3300031736	Soil	TVLPLPDLHWRDVLTGARHAGLRPLLSELTRRLPVALLIPDRVFLSEREQLTDGAAR
Ga0318494_100219891	3300031751	Soil	HWRDVLTGVRHAGLRPLLSELTRRLPVALLIPEEIYLAEQEQLSGERAR
Ga0318494_103403751	3300031751	Soil	ADTVLPLPELHWRDVLTGVRHAGLRPPLAELTRRLPVALLIPEEIYLAEQDRLSGESTR
Ga0307477_108854552	3300031753	Hardwood Forest Soil	WDVLTGTRHAGLRPPLSELTWRLPVALLIPERVYLDGQDQLADGGLA
Ga0318535_100077324	3300031764	Soil	GIRHAGLRPPLAELTRRLPVALLIPEEIYLAEQARLSGESAR
Ga0318543_101918862	3300031777	Soil	PELHWRDVLTGVRHAGLRPLLSELTWRLPAALLIPEEIYLAERERLAGGNAR
Ga0318543_102675531	3300031777	Soil	RDVLTGIRHAGLRPPLAELTRRLPVALLIPEEIYLAEQARLSGESAR
Ga0318566_100770031	3300031779	Soil	WRDVLTGVRHAGLRPLLSELTWRLPVALLIPEEIYLAERARLAGGNAR
Ga0318566_106350181	3300031779	Soil	LTGARHAGLRPLLSELTRRLPVALLIPERVYLAEQERLTDGSSR
Ga0318552_101058682	3300031782	Soil	LTGVRHAGLRPLLSELTRRLPVALLIPEEIYLAEQEQLSGERAR
Ga0318529_101970031	3300031792	Soil	DVLTGVRHAGLRPLLSELTWRLPVALLIPEEIYLAERARLAGGNAR
Ga0318529_104108222	3300031792	Soil	HWHDVLTGARHAGLRPLLSELTRRLPVALLIPERVYLAEQERLTDGSSR
Ga0318548_100948322	3300031793	Soil	IRHAGLRPPLAELTRRLPAALLIPEEIYLAEQARLSGESAR
Ga0318503_103080492	3300031794	Soil	AGLRPLLSELTRRLPVALLIPEEIYLAEQEQLSGERAR
Ga0318557_104115081	3300031795	Soil	HWRDVLTGIRHAGLRPLLSDLTRRLPVALLIPEEIYRAEQERLASGNGR
Ga0318523_100477694	3300031798	Soil	ELHWRDVLTGIRHAGLRPPLAELTRRLPVALLIPEEIYLAEQARLSGESAR
Ga0318565_100454751	3300031799	Soil	ADTVLPLPELHWRDVLTGIRHAGLRPPLAELTRRLPVALLIPEEIYLAEQARLSGESAR
Ga0318567_102702181	3300031821	Soil	LRPLLSELTWRLPVALLIPEEIYLAERERLAGGNAR
Ga0318564_103170682	3300031831	Soil	ALTGVRHAGLRPLLSELTWRLPVALLIPEQVYLAEQDRMPGEKA
Ga0318517_104676161	3300031835	Soil	VLPLPELHWRDVLTGVRHAGLRPPLSELTRRLPVALLIPEEIYLAEQERLSGQGTR
Ga0318520_106609552	3300031897	Soil	WHDVLTGARHAGLRPLLSELTRRLPVALLIPERVYLAEQERLTDGSSR
Ga0306923_103479371	3300031910	Soil	ADTVLPLPELHWHDVLTGARHAGLRPLLSELTRRLPVALLIPERVYLAEQERLTDGSSR
Ga0318530_100406332	3300031959	Soil	VLPLPGLHWRDVLTGIRHAGLRPQLAELTRRLPVALLIPEEIYLAEQARPSGEGGR
Ga0318563_100946202	3300032009	Soil	DTVLPLPELHWRDVLTGVRHAGLRPLLSDLTRRLPVALLIPEEIYRAEQERLADGNAR
Ga0318563_101104421	3300032009	Soil	ADTVLPLPELHWRDVLTGVRHAGLRPPLAELTRRLPVALLIPEEIYLAEQERLSGQGTR
Ga0318569_103549762	3300032010	Soil	ADTVLPLPDLHWRDVLTGARHAGLRPLLSELTRRLPVALLIPDRVFLSEREQLTDGAAR
Ga0318558_100591572	3300032044	Soil	LRPPLAELTRRLPVALLIPEEIYLAEQARLSGENAR
Ga0318506_102982132	3300032052	Soil	LHWRDVLTGIRHAGLRPPLAELTRRLPVALLIPEEIYLAEQEQLSGERAR
Ga0318533_107773762	3300032059	Soil	LPLPELHWRDVLTGVRHAGLRPLLSELTWRLPVALLIPEEIYLAERARLAGGNAR
Ga0318510_100585621	3300032064	Soil	HWRDVLTGVRHAGLRPLLSELTWRLPVALLIPEEIYLAERARLAGGNAR
Ga0318513_100193311	3300032065	Soil	VLTGARHAGLRPLLSELTRRLPVALLIPERVYLAEQERLTDGSSR
Ga0318514_102924811	3300032066	Soil	VLTGVRHAGLRPLLSELTRRLPVALLIPEEIYLAEQERLAGESAR
Ga0318553_102600052	3300032068	Soil	GARHAGLRPLLSELTRRLPVALLIPDRVYLSEQERLSDGRAR
Ga0306924_102497342	3300032076	Soil	LPLPELHWHDVLTGARHAGLRPLLSELTRRLPVALLIPERVYLAEQERLTDGSSR
Ga0306924_119574312	3300032076	Soil	DTVLPLPELHWRDVLTGVRHAGLRPPLAELTRRLPVALLIPEEIYLAEQERLSGQGTR
Ga0318525_101018631	3300032089	Soil	GRDVLTGVRHAGLRPLLSELTWRLPVALLIPEEIYLAEQERLSAESAR
Ga0318518_101393852	3300032090	Soil	ADTVLPLPELHWRDALTGARHAGLRPLLSELTRRLPVALLIPDRVYLSEQERLSDGRAR
Ga0310914_114277851	3300033289	Soil	HWRDALTGARHAGLRPLLSELTRRLPVALLIPDRVYLSEQERLSDGRAR
Ga0370515_0414914_2_166	3300034163	Untreated Peat Soil	PLPDLHWRDVLTGVRHAGTRPPLAELTRRLPVALLIPDQIYAQEQDRRSGRSAW