NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F083554

Metagenome Family F083554

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F083554
Family Type Metagenome
Number of Sequences 112
Average Sequence Length 39 residues
Representative Sequence MEPEGSLPHSQASATCLYPGPAQSSPYTHIPPPGDPS
Number of Associated Samples 17
Number of Associated Scaffolds 112

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Eukaryota
% of genes with valid RBS motifs 2.78 %
% of genes near scaffold ends (potentially truncated) 83.93 %
% of genes from short scaffolds (< 2000 bps) 63.39 %
Associated GOLD sequencing projects 15
AlphaFold2 3D model prediction Yes
3D model pTM-score0.14

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Eukaryota (89.286 % of family members)
NCBI Taxonomy ID 2759
Taxonomy All Organisms → cellular organisms → Eukaryota

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut
(100.000 % of family members)
Environment Ontology (ENVO) Unclassified
(100.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Animal → Animal proximal gut
(100.000 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68
1JGI24695J34938_104528431
2JGI24703J35330_107561321
3JGI24703J35330_108204811
4JGI24703J35330_109741551
5JGI24703J35330_110636092
6JGI24703J35330_111237711
7JGI24703J35330_111304991
8JGI24703J35330_111879401
9JGI24703J35330_111885031
10JGI24703J35330_112581712
11JGI24703J35330_113965681
12JGI24703J35330_115473833
13JGI24705J35276_117841422
14JGI24705J35276_119120832
15JGI24697J35500_104616382
16JGI24697J35500_105438761
17JGI24697J35500_106216122
18JGI24697J35500_106284741
19JGI24697J35500_108916231
20JGI24697J35500_109709242
21JGI24697J35500_110456801
22JGI24697J35500_110954961
23JGI24697J35500_110978681
24JGI24697J35500_111450694
25JGI24699J35502_103430701
26JGI24699J35502_106032992
27JGI24699J35502_106119502
28JGI24699J35502_106506311
29JGI24699J35502_109222161
30JGI24699J35502_109284023
31JGI24699J35502_109563701
32JGI24694J35173_102059811
33JGI24694J35173_104984591
34JGI24696J40584_123522612
35JGI24696J40584_123868051
36JGI24696J40584_124707772
37JGI24696J40584_124870491
38JGI24696J40584_124943761
39JGI24696J40584_126381291
40JGI24696J40584_126699901
41JGI24696J40584_129229554
42Ga0082212_100658451
43Ga0082212_100718256
44Ga0082212_100758995
45Ga0082212_100996671
46Ga0082212_101371164
47Ga0082212_101545661
48Ga0082212_102308745
49Ga0082212_103372351
50Ga0082212_104477983
51Ga0082212_104715601
52Ga0082212_105243482
53Ga0082212_105443762
54Ga0082212_105785131
55Ga0082212_106568721
56Ga0082212_112249851
57Ga0082212_115410871
58Ga0123357_100820033
59Ga0123357_101807631
60Ga0123357_103691821
61Ga0123357_110370881
62Ga0123355_101122882
63Ga0123355_101179704
64Ga0123355_101242287
65Ga0123355_101903412
66Ga0123355_105388401
67Ga0123355_106337912
68Ga0123355_116202721
69Ga0123356_101609201
70Ga0123356_104187221
71Ga0123356_104981501
72Ga0123356_107790201
73Ga0123356_120368601
74Ga0131853_100250571
75Ga0131853_100476554
76Ga0131853_100730063
77Ga0131853_100869085
78Ga0131853_101303183
79Ga0131853_104999662
80Ga0123353_1000657413
81Ga0123353_100141949
82Ga0123353_100420994
83Ga0123353_101323793
84Ga0123353_101347503
85Ga0123353_103445951
86Ga0123353_105128161
87Ga0123353_108060191
88Ga0123353_114876601
89Ga0136643_100515021
90Ga0136643_100719094
91Ga0136643_100796351
92Ga0136643_101105253
93Ga0136643_101109444
94Ga0136643_101296682
95Ga0136643_101432122
96Ga0136643_105702371
97Ga0123354_1001497314
98Ga0123354_100708641
99Ga0123354_101347611
100Ga0123354_103686121
101Ga0209755_100137645
102Ga0209755_100524341
103Ga0209755_100902531
104Ga0209755_102342722
105Ga0209755_103121011
106Ga0209755_104668011
107Ga0209755_104681581
108Ga0209755_106021721
109Ga0209755_107234401
110Ga0209755_109081861
111Ga0209755_111441731
112Ga0209628_111308222
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Fibrous Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 0.00%    Coil/Unstructured: 100.00%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

5101520253035MEPEGSLPHSQASATCLYPGPAQSSPYTHIPPPGDPSSequenceα-helicesβ-strandsCoilSS Conf. scoreDisordered Regions
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer

WebGL does not seem to be available.

This can be caused by an outdated browser, graphics card driver issue, or bad weather. Sometimes, just restarting the browser helps. Also, make sure hardware acceleration is enabled in your browser.

For a list of supported browsers, refer to http://caniuse.com/#feat=webgl.

Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.14
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains




 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
91.1%8.9%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds





 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Termite Gut
100.0%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI24695J34938_1045284313300002450Termite GutHFTEPEGSLPHSQASANCLYPEPAQSSPYIHIPPPREPS*
JGI24703J35330_1075613213300002501Termite GutNSPHFMEPEGSLPHSQASATRPYSGLAQSSPHTHNPPPGDPS*
JGI24703J35330_1082048113300002501Termite GutRNSPHFMEPEGSLPHSQASATRPYPELAQSSPRSHNPPPGDPS*
JGI24703J35330_1097415513300002501Termite GutFAASQEIPHFMEPEGSLPHSQASATRPYPGLAQSSPHAHNPPPGDPS*
JGI24703J35330_1106360923300002501Termite GutRNSPHFMEPKGSLPHSQASATRPYPGLAQSSPHTHNPPPGDPS*
JGI24703J35330_1112377113300002501Termite GutNSPHFMEPEGSLPHSQASATRPYRGLAQSSPHAHNPPPGDPF*
JGI24703J35330_1113049913300002501Termite GutMEPEGSLPHSQASATRPYPVLAQSSPHTHNQPRGDLFAFT*
JGI24703J35330_1118794013300002501Termite GutNSPHFMEPEGSLPHSQASAIRPYPGLAQSSPHNHTQPPGDPS*
JGI24703J35330_1118850313300002501Termite GutRNSPHFMEPEGSLPHSQASATRPYPGLAQSSALTHNPFAFRNFYG*
JGI24703J35330_1125817123300002501Termite GutMEPEGSLPHSEASVTCPYPGLAQSSPHAHNPPPGDPPNIIHP
JGI24703J35330_1139656813300002501Termite GutMEPEGSLPHSQASATRPYPGLAQSSPHAHNAPPADIFIIY*
JGI24703J35330_1154738333300002501Termite GutRNSPHFMEPEGSLLHSQASATRPYPGLAQSSPHTHNPPPGDPS*
JGI24705J35276_1178414223300002504Termite GutPHFMEPEGSLPHSQASATRPYPELAQSSPRSHNPPPGDPS*
JGI24705J35276_1191208323300002504Termite GutSPHFMEPEGSLPHSQASATHPYPGLAQSSTHAHNPPPGDPSIYA*
JGI24697J35500_1046163823300002507Termite GutMELEGSLQHSQASATCPCPGPAQSSPHTHITPPADPPNIIH
JGI24697J35500_1054387613300002507Termite GutFLWNPEGSLPHSQASATCRYPGPAQSSPHTHIPPPGDPS*
JGI24697J35500_1062161223300002507Termite GutANWFAASQEIPRIFMEPEGSLPHSQTSATCPYPGPAQSSPRTHIPPPGDPS*
JGI24697J35500_1062847413300002507Termite GutRIFMEPEGLLPHSQASATCPYPGPAQSSPHTHILLPGDPS*
JGI24697J35500_1089162313300002507Termite GutNSPHFMEPEGSLLHSQASATCPYPGPAQSSPHTYIPPPGDPS*
JGI24697J35500_1097092423300002507Termite GutQEIPRIFMEPEGSLPHSQASATCPYPGPAQSSPRTHIAPPGEPS*
JGI24697J35500_1104568013300002507Termite GutMEPESSLAHPQASANSPYPGPAQSSPHTRIPLPANPSYSY
JGI24697J35500_1109549613300002507Termite GutAASQEIPRIFMEPEGSLPHSQASATCPYHVPAQSSPHTHIPPPGDPS*
JGI24697J35500_1109786813300002507Termite GutRNSPHFMEPEGSLPHSQASATCPYPVPAQSSPHTHIPPTGDPS*
JGI24697J35500_1114506943300002507Termite GutNSPHFMEPEGLLPHSQASATCPYPGPAQSSPHTHIPPPGDTS*
JGI24699J35502_1034307013300002509Termite GutHFMEPEGSSPHSQASATCPYPGPAQSSPHTHIQPPGDPS*
JGI24699J35502_1060329923300002509Termite GutQEIPRIFMEPEGSLPHSQASATCPYPGPAQSSSHTHIPPPADPT*
JGI24699J35502_1061195023300002509Termite GutEIPRIFMEPEGSLPHSQASATCPYPGPAQSSPRTHIAPPGEPS*
JGI24699J35502_1065063113300002509Termite GutHFMEPEGSLPHSQASATCPYPGPAQSSPHTHIQPPAYRKIIK*
JGI24699J35502_1092221613300002509Termite GutRFMEPEGSSPHSQASATCPYPEPAQSSPHTLIPPPEGQS*
JGI24699J35502_1092840233300002509Termite GutSPHFMEPEGSLPHSQASATCPYPVPAQSSPHTHIPPTGDPS*
JGI24699J35502_1095637013300002509Termite GutSPHFMEPESSLPHSQASAICPYPVPAQSSPHTHIPPPGDPS*
JGI24694J35173_1020598113300002552Termite GutSQEIPHFTEPEGSLPHSQESATCLYPGPAQSSPYTHIPPPGDPS*
JGI24694J35173_1049845913300002552Termite GutHFTEPEGSLPHSQASATCPYPGPVQSXXYTHIPPPGDPS*
JGI24696J40584_1235226123300002834Termite GutPHFTEPEGSLPHSQASATCLYPGPAQSSPHTNIQPHGDPS*
JGI24696J40584_1238680513300002834Termite GutSPHFTEPEGSLPHSQASVTCPYPGPAQSSPHTHIPPPGDPA*
JGI24696J40584_1247077723300002834Termite GutHFTEPEGSLPHSQASATCLYPEPAQSSPYTQTPLPGDPSLY*
JGI24696J40584_1248704913300002834Termite GutPHFTEPEGSLPHSQPSANCLYPGPAQSSPHTEIPPPGDPS*
JGI24696J40584_1249437613300002834Termite GutPHFTEPEGSLPHLQASATCLYPGPAQSSPHTDIPPPGDSS*
JGI24696J40584_1263812913300002834Termite GutSPHFTEGSLPHSQASVTCLYPGPAQSSPYTHIPPPGDPS*
JGI24696J40584_1266999013300002834Termite GutSRNSPHFTEPEGSLPYSQASAIYLYPGPAQSSPYTHIPTPGDHS*
JGI24696J40584_1292295543300002834Termite GutHFTEPEGSLPHSQASATCLYPGPAQSSPHTHIPPTGDPS*
Ga0082212_1006584513300006045Termite GutMEPEGSLPHSQASATRSYPGLAQSSPHTRNPPPADPS
Ga0082212_1007182563300006045Termite GutMEPEGSLPHSQASTTRPYPGLAQSSPHAHNQPSGDPSYYYPP
Ga0082212_1007589953300006045Termite GutMEPEGSLPHSQASATRPYPGLAQSSPHAHNPPPGD
Ga0082212_1009966713300006045Termite GutMEPEGSLPHSQASATRPYPGLAQSSPHTHNPPPGDPS*
Ga0082212_1013711643300006045Termite GutMEPEGSLPHSQASTTHPYPGLAQSSPHAHNPPPGDP
Ga0082212_1015456613300006045Termite GutMEPEGSLPHSQASATRPYPGLAQSSPHTHNPPPADPS
Ga0082212_1023087453300006045Termite GutMESEGSLTHSQASTTRPYPGLAQSSPHAHNPPPGDP
Ga0082212_1033723513300006045Termite GutMEPEGSLPHSQASATRPYPGLAQSSPHTHNPPPADPSKY
Ga0082212_1044779833300006045Termite GutMEPEGSLPHSQASATRPYPGLAQSSPHTHNQPPADPFQ
Ga0082212_1047156013300006045Termite GutMEPEGSLPHSQASATRPYLGLAQTSPHAHNPPPGN
Ga0082212_1052434823300006045Termite GutSPHFMEPEGSLPHSQASATRPYPGLAQYSPHTRNPPPADSS*
Ga0082212_1054437623300006045Termite GutMEPEGSFPHSQASATRPYPGLAQSSPHAHNPPPGDP
Ga0082212_1057851313300006045Termite GutMETEGSLPHSQTSATRPYPGLAQSSPHTHNPPPGDP
Ga0082212_1065687213300006045Termite GutMEPEGSLPRSQASATRPYLELAQSSPHAHNPPPGDPS
Ga0082212_1122498513300006045Termite GutHFMEPEGSLPHSQASATRHYPEIAQSSPHAHNPPPGDPS*
Ga0082212_1154108713300006045Termite GutMEPKGSLPHSQASATRPYTGLAQSSPHTHNPPPAD
Ga0123357_1008200333300009784Termite GutMEPEGSLPYSQASATRSYPGPAKSSPYTQIPPPGEPS*
Ga0123357_1018076313300009784Termite GutMEPEGSLPHSQASATCLYPGPAQTSPYTHIPLPGD
Ga0123357_1036918213300009784Termite GutMEPEGSLPYSQASATCLYPGPAQSSPYTHIPPPGD
Ga0123357_1103708813300009784Termite GutMEPEGSLPHSQASANRLYPGPAQSSPYTHIPPPGD
Ga0123355_1011228823300009826Termite GutMEPEGSLPHSQASATCLYPGPAQSSPYTHIPPSGDPA
Ga0123355_1011797043300009826Termite GutMEPEGSLPHSQAPATCLYPGPAQSSPYTHIPPPGDLS*
Ga0123355_1012422873300009826Termite GutMEPKGSLPHSQASATCLYPGPTQSSPYTHIPPPGDPS
Ga0123355_1019034123300009826Termite GutMETENSLLHSQASANCPYPGPAQSSPYTHIPPNADTS*
Ga0123355_1053884013300009826Termite GutMEPEGSLPHSQASAICLYPGPAQSSPYTYIPPPGDP
Ga0123355_1063379123300009826Termite GutMEPEGSLLHSQASATCLYPGPAQSSPYTHIPLPGDP
Ga0123355_1162027213300009826Termite GutMESEGSLLHSQASANCLYPGPAQSSPYTHIPPPGDPT
Ga0123356_1016092013300010049Termite GutMEPEGSLPHSQASATRLYPGPTQSSPYTHIPPPGDL
Ga0123356_1041872213300010049Termite GutMEPEGSLPHSQASATCLYPGPAQSSPYTHIPSPAD
Ga0123356_1049815013300010049Termite GutMEPEGSLPHSQASANCLYPGPAQSSPYTHIPPPADP
Ga0123356_1077902013300010049Termite GutMEPEGSLPHSQASATCLYPGPTQSSPYTHIPPPGDP
Ga0123356_1203686013300010049Termite GutMEPEVSLPHSQASATRPYPGPAQSSPHTHTPTSLI
Ga0131853_1002505713300010162Termite GutMEPEGSLPHSQASATYLYPGPAQSSPYIHILPPGDPS*
Ga0131853_1004765543300010162Termite GutMEPEGSLPHSQASATYLYPEPAQSSPYTHIPPPGDPS*
Ga0131853_1007300633300010162Termite GutMEPEGSLPHSQASATCLYPEPAQSSQYTHIPLPGDSS*
Ga0131853_1008690853300010162Termite GutMEPEGSLQYSQASATRPYPGPAQSSPYTHISPPGDPS*
Ga0131853_1013031833300010162Termite GutMEPEGSLPHSQASATYPYPGTTQSSPHTHIPPPGDPS
Ga0131853_1049996623300010162Termite GutMEPEGSLPYSQASATYPYPGPTQSSPHSHIPPPGD
Ga0123353_10006574133300010167Termite GutMEPEGSLPHSQASATYLYPGPAQSSPYTHIPPPGD
Ga0123353_1001419493300010167Termite GutMEPECSLPHSQASANCLYPGPAQSSPYTHIPPPGDP
Ga0123353_1004209943300010167Termite GutMEPEGSLPHLQASATCLYPGPAQSSPYTHIPPTGDPS*
Ga0123353_1013237933300010167Termite GutMETEGSLPHSQASATYLYPGPAQSSPYTHILPPGDPS*
Ga0123353_1013475033300010167Termite GutTEPEGSLPHSQASATCPYPGPAQSSPYTHIPPPGDPS*
Ga0123353_1034459513300010167Termite GutMEPEGSLPHSQASATCPYPGPTQSSPHTHIPPIYI
Ga0123353_1051281613300010167Termite GutMEPEGSLPYSQASATYPYPGPTQSSPHTHIPPPGD
Ga0123353_1080601913300010167Termite GutMEPEGSLPHSQASATYPYPGPTQSSPHTHIPPPGD
Ga0123353_1148766013300010167Termite GutMEPEGSLQHSQASANCPYPGPTQSSPYTHIPPPGDPS
Ga0136643_1005150213300010369Termite GutMEPEGSLPHSQASATCPYLGPTQSSPHTHIPPPGDPS
Ga0136643_1007190943300010369Termite GutFTEPEGSLPHSQASATRLYPGPAQSSPYTYIPPPGDPS*
Ga0136643_1007963513300010369Termite GutMEPEGSLPHSQASATYLYPGPAQSSPYNHTLPPGDPS*
Ga0136643_1011052533300010369Termite GutMEAEGSLPHSQASATGPYPGPAQSSPYTHIPPPGDPS*
Ga0136643_1011094443300010369Termite GutMEPEGSLLHSQASATCLYPAPAQSSPYTHIPPPGDPS
Ga0136643_1012966823300010369Termite GutMEPEGSLPHSQASATCPYPGPAQSSSYTHIPPTGDPSSYNPPIYA*
Ga0136643_1014321223300010369Termite GutMEPEGSLPYSQASAIYPYPGPTQSSPHTHMPPPEDP
Ga0136643_1057023713300010369Termite GutMEPEGSLSYSQASATCPYPGPTQSSPHTHIPPPGDPS
Ga0123354_10014973143300010882Termite GutMEPEGSLPHSQASAICPYPGPAQSSPYTHIPPPGDP
Ga0123354_1007086413300010882Termite GutMETEGSLPHSQASATYLYPGPAQSSPYTHILPPGDP
Ga0123354_1013476113300010882Termite GutMEPEGSLPHSQASATCSYPGPTQSSPHTHIPPTGDP
Ga0123354_1036861213300010882Termite GutMEPEGSLPHSQASANCLYAGPAQSSPYTHIPPPGD
Ga0209755_1001376453300027864Termite GutMEPEGSLLHSQASATHPYLGPAQSSLYTHIPPAGDPS
Ga0209755_1005243413300027864Termite GutMEPEGSLPHSQASATCLYPGPAQSSPYTHIPPPGDPS
Ga0209755_1009025313300027864Termite GutMEPEGSLPHSQASATCLYPGPAKSSPYTHIPPSGDPS
Ga0209755_1023427223300027864Termite GutMEPEGSLWHSQASATCLYPGPAQSSPYTHIPPPGDPSKYY
Ga0209755_1031210113300027864Termite GutMEPEGSLPHSQAYATCLYPGPAQSSPYTHIPSPGD
Ga0209755_1046680113300027864Termite GutMEPEGSLAHSQASATCLYPGPAQSSPYTHIPPPGDPS
Ga0209755_1046815813300027864Termite GutMEPEGSLPHSQPSATCLYPGPAQSSPYTHIPPPGDP
Ga0209755_1060217213300027864Termite GutMEPESSLPHSQAYATCLYPGPAQSSPHAHIPPPGDPS
Ga0209755_1072344013300027864Termite GutMEPEGSLPHSQASATCPYPGPAQSSPYAHIPPPGDP
Ga0209755_1090818613300027864Termite GutFTEPEGSLAHSQAYATCPYPGPAQSSPHTHIPPPGDPS
Ga0209755_1114417313300027864Termite GutMEPEGSLPHSQASATCPYPGPAQSSPHTHIPPPGD
Ga0209628_1113082223300027891Termite GutMEPEGSLPHSQVPATCPYPESARSSPYTHIPLPEKSI


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.