Metagenome Family F083447

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F083447
Family Type	Metagenome
Number of Sequences	113
Average Sequence Length	41 residues
Representative Sequence	MHGRECIRYDDKAASRLAPNGDDGRFDFYVAMNGRNDWLDLE
Number of Associated Samples	50
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	11.50 %
% of genes near scaffold ends (potentially truncated)	46.90 %
% of genes from short scaffolds (< 2000 bps)	97.35 %
Associated GOLD sequencing projects	46
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.20

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (82.301 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (42.478 % of family members)
Environment Ontology (ENVO)	Unclassified (61.947 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (74.336 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 44.29% β-sheet: 0.00% Coil/Unstructured: 55.71%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.20
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.20
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF04392	ABC_sub_bind	44.25
PF01007	IRK	0.88
PF09948	DUF2182	0.88
PF00723	Glyco_hydro_15	0.88
PF08240	ADH_N	0.88
PF08241	Methyltransf_11	0.88
PF01625	PMSR	0.88
PF00753	Lactamase_B	0.88
PF05036	SPOR	0.88
PF13358	DDE_3	0.88
PF01695	IstB_IS21	0.88
PF02668	TauD	0.88
PF00589	Phage_integrase	0.88
PF13360	PQQ_2	0.88
PF13565	HTH_32	0.88
PF05598	DUF772	0.88
PF13592	HTH_33	0.88
PF09334	tRNA-synt_1g	0.88
PF06441	EHN	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	44.25
COG0018	Arginyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.88
COG0060	Isoleucyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.88
COG0143	Methionyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.88
COG0215	Cysteinyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.88
COG0225	Peptide methionine sulfoxide reductase MsrA	Posttranslational modification, protein turnover, chaperones [O]	0.88
COG0495	Leucyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.88
COG0525	Valyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.88
COG0596	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold	Coenzyme transport and metabolism [H]	0.88
COG1484	DNA replication protein DnaC	Replication, recombination and repair [L]	0.88
COG2175	Taurine dioxygenase, alpha-ketoglutarate-dependent	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.88
COG3387	Glucoamylase (glucan-1,4-alpha-glucosidase), GH15 family	Carbohydrate transport and metabolism [G]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	83.19 %
Unclassified	root	N/A	16.81 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	83.19 %
Unclassified	root	N/A	16.81 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	82.30 %
Unclassified	root	N/A	16.81 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.88 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	56.64 %
Unclassified	root	N/A	16.81 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.88 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.88 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	0.88 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	46.02 %
Unclassified	root	N/A	16.81 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3.54 %
Methanomada group	clade	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group	0.88 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.88 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.88 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	25.66 %
Unclassified	root	N/A	16.81 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	3.54 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	3.54 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.88 %
Methanobacteria	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.81 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	12.39 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.54 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	3.54 %
Lichenibacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae	0.88 %
Methanobacteriales	order	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.81 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	8.85 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.54 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	3.54 %
Lichenibacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae → Lichenibacterium	0.88 %
Methanobacteriaceae	family	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.81 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.54 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	3.54 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1.77 %
Bradyrhizobium archetypum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium archetypum	0.88 %
Methanobacterium	genus	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobacterium	0.88 %
Lichenibacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae → Lichenibacterium	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.81 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.54 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	3.54 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1.77 %
unclassified Methanobacterium	no rank	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobacterium → unclassified Methanobacterium	0.88 %
Bradyrhizobium archetypum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium archetypum	0.88 %
Lichenibacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae → Lichenibacterium	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.81 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.54 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	3.54 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1.77 %
Methanobacterium sp.	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobacterium → unclassified Methanobacterium → Methanobacterium sp.	0.88 %
Bradyrhizobium archetypum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium archetypum	0.88 %
Lichenibacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae → Lichenibacterium	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459002\|FZY7DQ102G469C	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
2170459010\|GIO7OMY01C803M	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
2170459013\|GO6OHWN02HVQF1	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300005332\|Ga0066388_101549572	All Organisms → cellular organisms → Bacteria → Proteobacteria	1162	Open in IMG/M
3300005332\|Ga0066388_105689969	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	631	Open in IMG/M
3300005713\|Ga0066905_101701818	Not Available	579	Open in IMG/M
3300005713\|Ga0066905_101968425	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	542	Open in IMG/M
3300005764\|Ga0066903_100450139	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2151	Open in IMG/M
3300005764\|Ga0066903_100882148	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1615	Open in IMG/M
3300005764\|Ga0066903_101804177	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1169	Open in IMG/M
3300005764\|Ga0066903_103157394	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae → Lichenibacterium	891	Open in IMG/M
3300005764\|Ga0066903_103547411	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	841	Open in IMG/M
3300005764\|Ga0066903_107432556	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300009792\|Ga0126374_10065936	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1914	Open in IMG/M
3300009792\|Ga0126374_10608594	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	808	Open in IMG/M
3300010048\|Ga0126373_11211873	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	821	Open in IMG/M
3300010162\|Ga0131853_10959819	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300010162\|Ga0131853_11070015	Not Available	615	Open in IMG/M
3300010358\|Ga0126370_11745836	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	600	Open in IMG/M
3300010358\|Ga0126370_12462004	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	518	Open in IMG/M
3300010359\|Ga0126376_11010839	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	832	Open in IMG/M
3300010359\|Ga0126376_12270562	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	588	Open in IMG/M
3300010360\|Ga0126372_11617311	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium archetypum	687	Open in IMG/M
3300010360\|Ga0126372_12109250	Not Available	612	Open in IMG/M
3300010361\|Ga0126378_12009066	All Organisms → cellular organisms → Bacteria → Proteobacteria	659	Open in IMG/M
3300010366\|Ga0126379_11596312	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	758	Open in IMG/M
3300010366\|Ga0126379_11788437	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	719	Open in IMG/M
3300010366\|Ga0126379_11821147	All Organisms → cellular organisms → Bacteria	713	Open in IMG/M
3300010366\|Ga0126379_12418309	Not Available	625	Open in IMG/M
3300010366\|Ga0126379_12835728	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	580	Open in IMG/M
3300010366\|Ga0126379_13245243	Not Available	545	Open in IMG/M
3300010366\|Ga0126379_13414754	All Organisms → cellular organisms → Bacteria → Proteobacteria	532	Open in IMG/M
3300010366\|Ga0126379_13632294	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	517	Open in IMG/M
3300010398\|Ga0126383_11671704	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	726	Open in IMG/M
3300010398\|Ga0126383_13561440	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	509	Open in IMG/M
3300011120\|Ga0150983_12196267	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	539	Open in IMG/M
3300016319\|Ga0182033_11345943	Not Available	642	Open in IMG/M
3300016319\|Ga0182033_11877174	All Organisms → cellular organisms → Bacteria → Proteobacteria	544	Open in IMG/M
3300016319\|Ga0182033_12069908	Not Available	519	Open in IMG/M
3300016341\|Ga0182035_11991202	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	528	Open in IMG/M
3300016357\|Ga0182032_10977176	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobacterium → unclassified Methanobacterium → Methanobacterium sp.	722	Open in IMG/M
3300016404\|Ga0182037_11677679	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300018001\|Ga0187815_10256412	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	740	Open in IMG/M
3300021478\|Ga0210402_10403745	All Organisms → cellular organisms → Bacteria → Proteobacteria	1269	Open in IMG/M
3300027874\|Ga0209465_10350130	All Organisms → cellular organisms → Bacteria	740	Open in IMG/M
3300031226\|Ga0307497_10073847	Not Available	1263	Open in IMG/M
3300031226\|Ga0307497_10078052	Not Available	1238	Open in IMG/M
3300031564\|Ga0318573_10358515	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	783	Open in IMG/M
3300031573\|Ga0310915_10755748	Not Available	685	Open in IMG/M
3300031573\|Ga0310915_10999779	Not Available	584	Open in IMG/M
3300031668\|Ga0318542_10404334	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	705	Open in IMG/M
3300031668\|Ga0318542_10457425	Not Available	662	Open in IMG/M
3300031718\|Ga0307474_11069384	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	639	Open in IMG/M
3300031718\|Ga0307474_11639866	Not Available	505	Open in IMG/M
3300031719\|Ga0306917_11437472	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	531	Open in IMG/M
3300031744\|Ga0306918_10302010	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1234	Open in IMG/M
3300031744\|Ga0306918_10608564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	856	Open in IMG/M
3300031744\|Ga0306918_11002347	All Organisms → cellular organisms → Bacteria	649	Open in IMG/M
3300031771\|Ga0318546_11317510	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	507	Open in IMG/M
3300031793\|Ga0318548_10531244	All Organisms → cellular organisms → Bacteria	574	Open in IMG/M
3300031796\|Ga0318576_10302332	All Organisms → cellular organisms → Bacteria	756	Open in IMG/M
3300031845\|Ga0318511_10321758	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	701	Open in IMG/M
3300031860\|Ga0318495_10515974	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	521	Open in IMG/M
3300031879\|Ga0306919_10213238	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1440	Open in IMG/M
3300031890\|Ga0306925_10287511	All Organisms → cellular organisms → Bacteria → Proteobacteria	1769	Open in IMG/M
3300031890\|Ga0306925_10348641	All Organisms → cellular organisms → Bacteria → Proteobacteria	1590	Open in IMG/M
3300031890\|Ga0306925_10870579	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	929	Open in IMG/M
3300031890\|Ga0306925_11776344	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	592	Open in IMG/M
3300031890\|Ga0306925_12206715	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	512	Open in IMG/M
3300031910\|Ga0306923_10351771	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1680	Open in IMG/M
3300031910\|Ga0306923_11176830	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	821	Open in IMG/M
3300031910\|Ga0306923_11385790	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	741	Open in IMG/M
3300031910\|Ga0306923_11876714	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300031910\|Ga0306923_11947350	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	598	Open in IMG/M
3300031910\|Ga0306923_11977135	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300031910\|Ga0306923_12557710	Not Available	502	Open in IMG/M
3300031912\|Ga0306921_11126853	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	878	Open in IMG/M
3300031912\|Ga0306921_11355308	Not Available	784	Open in IMG/M
3300031942\|Ga0310916_11118578	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	654	Open in IMG/M
3300031946\|Ga0310910_11042437	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	638	Open in IMG/M
3300031947\|Ga0310909_10338746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1262	Open in IMG/M
3300031947\|Ga0310909_10973118	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
3300031947\|Ga0310909_11038406	All Organisms → cellular organisms → Bacteria	668	Open in IMG/M
3300031947\|Ga0310909_11362522	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300031947\|Ga0310909_11457768	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	546	Open in IMG/M
3300031954\|Ga0306926_10936281	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1035	Open in IMG/M
3300031954\|Ga0306926_11815193	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	692	Open in IMG/M
3300031954\|Ga0306926_12448857	Not Available	574	Open in IMG/M
3300032001\|Ga0306922_10643974	All Organisms → cellular organisms → Bacteria	1120	Open in IMG/M
3300032001\|Ga0306922_11169494	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	785	Open in IMG/M
3300032001\|Ga0306922_11880800	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	587	Open in IMG/M
3300032001\|Ga0306922_11964045	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300032035\|Ga0310911_10552386	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	668	Open in IMG/M
3300032035\|Ga0310911_10813384	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300032041\|Ga0318549_10507103	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300032066\|Ga0318514_10615803	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300032068\|Ga0318553_10683309	Not Available	537	Open in IMG/M
3300032076\|Ga0306924_10124569	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2935	Open in IMG/M
3300032076\|Ga0306924_10746215	All Organisms → cellular organisms → Bacteria	1096	Open in IMG/M
3300032076\|Ga0306924_11239047	All Organisms → cellular organisms → Bacteria	805	Open in IMG/M
3300032261\|Ga0306920_100357422	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2173	Open in IMG/M
3300032261\|Ga0306920_100579735	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1661	Open in IMG/M
3300032261\|Ga0306920_100694551	Not Available	1500	Open in IMG/M
3300032261\|Ga0306920_101356943	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1021	Open in IMG/M
3300032261\|Ga0306920_102269121	All Organisms → cellular organisms → Bacteria	753	Open in IMG/M
3300032261\|Ga0306920_102368248	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	734	Open in IMG/M
3300032261\|Ga0306920_102446877	All Organisms → cellular organisms → Bacteria	720	Open in IMG/M
3300032261\|Ga0306920_103110606	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	623	Open in IMG/M
3300032261\|Ga0306920_103554214	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300032261\|Ga0306920_103625318	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300032261\|Ga0306920_103720715	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	559	Open in IMG/M
3300032261\|Ga0306920_104010938	Not Available	534	Open in IMG/M
3300032261\|Ga0306920_104281234	All Organisms → cellular organisms → Bacteria → Proteobacteria	513	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.23%
Host-Associated	Host-Associated	1.77%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	97.35%
Arthropoda	Host-Associated → Arthropoda	1.77%
Aquatic	Environmental → Aquatic	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	97.35%
Digestive System	Host-Associated → Arthropoda → Digestive System	1.77%
Freshwater	Environmental → Aquatic → Freshwater	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	86.73%
Loam	Environmental → Terrestrial → Soil → Loam	10.62%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	1.77%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.89%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	64.60%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.47%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.62%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.65%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	1.77%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	42.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	20.35%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	17.70%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	9.73%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	2.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.77%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.77%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	1.77%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459002	Grass soil microbial communities from Rothamsted Park, UK - March 2009 direct MP BIO 1O1 lysis 0-21 cm	Environmental	Open in IMG/M
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
2170459013	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis soil at the rocks surface 0-21cm	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010162	Labiotermes labralis P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P1 (version 2)	Host-Associated	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300018001	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
E1_04995820	2170459002	Grass Soil	MRVHEHIRHDDKTACRLAPKGDDGRFDFYVAMNGRNDRHDLE
F62_07322830	2170459010	Grass Soil	MHVREHIRSDDKAASRLAPQRDDGGFDLYLAMNGRSDWHDLE
N57_02611890	2170459013	Grass Soil	MQAEKCTRNDDKATSRLAPKGDDGRFDFYFAMNGRND
Ga0066388_1015495724	3300005332	Tropical Forest Soil	MCEHEYIRHDDKAASRLAPQGDDGRFDLCVAVNGRYNWHDLE*
Ga0066388_1056899691	3300005332	Tropical Forest Soil	QEYIRDDDKAASRLAPKGDDGRFDFCFVVNVRNDWLDLE*
Ga0066905_1017018181	3300005713	Tropical Forest Soil	PRHDGKAASRLASKGDDGRFDFHVAANGRRDWHDLE*
Ga0066905_1019684251	3300005713	Tropical Forest Soil	CAMREREYFRYNDEAASRLVPKGDDSRFDFYVATNGRNDWHDLE*
Ga0066903_1004501393	3300005764	Tropical Forest Soil	LIRHDDKAASQLAPEGDDGSFDLYVAMNGRNDWYDLE*
Ga0066903_1008821481	3300005764	Tropical Forest Soil	REYIRHDDKAASRLAPQGDDGRFDFSVAVNGLDDWRDLQ*
Ga0066903_1018041771	3300005764	Tropical Forest Soil	SIRHDDKAASRLAPKGDDGRFDLYVAVNGRNDCLDLE*
Ga0066903_1031573943	3300005764	Tropical Forest Soil	MRRHECIRRDDKATSRLAPKVVDGRLNIYVAVNGRKDWLDLE*
Ga0066903_1035474111	3300005764	Tropical Forest Soil	EHIRHDDKAASRLAPKGRDGHIDFCVAMNGRSDWRDLECPGPRLK*
Ga0066903_1074325561	3300005764	Tropical Forest Soil	MHVREYIRHDDKTASRLAPQGDDGRFDFYVVMNGR
Ga0126374_100659361	3300009792	Tropical Forest Soil	MRGHEYIRHDDKAASRLAPEGHDGRFDFYVAMNGRSDWRDIE*
Ga0126374_106085942	3300009792	Tropical Forest Soil	MHEREYIKHDDKAAARLAPKGRDGRFDFFALNGRGD*
Ga0126373_112118731	3300010048	Tropical Forest Soil	MHVREGIGHDNKAGSRLAPEGDDGRFDFCVAMNGRNDWHDLE*
Ga0131853_109598191	3300010162	Termite Gut	MREHESIHHDDKAASRLAPKGDDGRFDFCAAMNGRSDWHDLVRAAVSNEDI*
Ga0131853_110700152	3300010162	Termite Gut	MHLREHIRHDDKAASRLAAKGDDGRFDFYVAMNGRNDWHDLERPGRRLK*
Ga0126370_117458362	3300010358	Tropical Forest Soil	MRSHESIRHDDKPASGLAPKGRGGRFDFDVVMNGRNDWLDFE*
Ga0126370_124620042	3300010358	Tropical Forest Soil	MHNHEYIRVDDKAASRLAPKGLDCVLDLFVTMNGRDHWLDLELPGRRRK*
Ga0126376_110108393	3300010359	Tropical Forest Soil	MHGREYIRHGDKAASRLAPKGDDGGFDVCVAMNGRSD*
Ga0126376_122705621	3300010359	Tropical Forest Soil	MHDREYIRYDDKAASRLAPKADDGGLDFYVAMNGRNDWRDPE*
Ga0126372_116173112	3300010360	Tropical Forest Soil	MLLREYIRHNDKAASRLAPNGDDGRFDLYVAMDGRNDQRDLE*
Ga0126372_121092501	3300010360	Tropical Forest Soil	RHDDKVAARLAPQGRDGRFDVYVDMNGRNDWHDLE*
Ga0126378_120090662	3300010361	Tropical Forest Soil	MRARECIRHEDKAASRLAPKGDDGRFDLCVAVSGRNDWLDLE*
Ga0126379_115963123	3300010366	Tropical Forest Soil	MHVHERIRCDDKAASRFALKGDDGRFDFCVAMNGRNDWHDLE*
Ga0126379_117884371	3300010366	Tropical Forest Soil	MHGHEYIRRDDKAASRLAPKGRDGRADFYAAMNGLSA*
Ga0126379_118211472	3300010366	Tropical Forest Soil	MRIREWLRRDDEAASRLAPKVHDGRFDFYVAMNGRSDWRDIE*
Ga0126379_124183093	3300010366	Tropical Forest Soil	LRESIRQDDKAASRLAPKGRDGRFDLYVAMNGRDDCLDL
Ga0126379_128357281	3300010366	Tropical Forest Soil	MHGREDIRHDDKPASRFAPKGDDGRFDLYVAMNRRNDWFDLE*
Ga0126379_132452431	3300010366	Tropical Forest Soil	MRVHEWIRQDDKAASRFAPERDDGRFDFYVAMNGRSDWRDLK*
Ga0126379_134147541	3300010366	Tropical Forest Soil	MHGREYIRHDDKAASRLAPKGDDGRFDLHVAMNGRSG*
Ga0126379_136322941	3300010366	Tropical Forest Soil	MPERKYIRHDDETASRLAPKGDDGRFDFYIAMNGRSDCLDVE*
Ga0126383_116717041	3300010398	Tropical Forest Soil	DWRAMHGREYIRHEDKAACRLAPKGCDGCFDFYVAMNRRNDRLDLE*
Ga0126383_135614401	3300010398	Tropical Forest Soil	MREHEYTPQDYKAASRLAPKGRDGRFDLCVAVNGRRDWHDLE*
Ga0150983_121962671	3300011120	Forest Soil	MHEGEQIRQDDKAASRLAPKGRDGRFDLYVAVNGRSD*
Ga0182033_113459431	3300016319	Soil	AMHVREYIRYDDKAASRLTSKGRDGRFDLSVAMNGRHDWHDLE
Ga0182033_118771742	3300016319	Soil	AEREHIRHDDEAASRLTPDGREGRFDLYVAMNGRND
Ga0182033_120699081	3300016319	Soil	MRLREHIRHDDKAASRITPKGDDGRFDHSVTIDGGNDW
Ga0182035_119912022	3300016341	Soil	MRDQESTRQDDKAASWLASKGDDGRVDLCVAANGRTDGHDLE
Ga0182032_109771761	3300016357	Soil	MPAREWIPYDDKAASRLAPKVLDGRFDLSVAMNELDDWLDLE
Ga0182037_116776791	3300016404	Soil	IRRDDKAASRLAPKGVDRCFDLYVAVNRRSYWRDLE
Ga0187815_102564122	3300018001	Freshwater Sediment	MRAREWIRRDDKAASRLAPKVHDGRFDFYVAMNGRSDWRDIE
Ga0210402_104037454	3300021478	Soil	MRVQEYIRHDEKAASRLAPKGDDGGFDFYVAANGRNDWRDLE
Ga0209465_103501302	3300027874	Tropical Forest Soil	LIRHDDKAASQLAPEGDDGSFDLYVAMNGRNDWYDLE
Ga0307497_100738472	3300031226	Soil	RRAMRERECIRNDDKAASRLTPKGDGGRFDFYVAVDGRIDY
Ga0307497_100780522	3300031226	Soil	LHDHPCIRHDDKAASRLAPKGDNGRFDLSLAVNGRNDWHDRFSRWRRR
Ga0318573_103585152	3300031564	Soil	MHEHEAIQHDDKAASRLAPKGDDGRFDLHVAVNARNDWLDLERRSRRLN
Ga0310915_107557481	3300031573	Soil	GRCQYDRRSMRDREYIRYDDKTASRLASEGHDGRFDLYGIMNRRDDWHDLE
Ga0310915_109997792	3300031573	Soil	ARHHDKAASRLAPKGANGRFDFYVTMNECRDWHDLE
Ga0318542_104043342	3300031668	Soil	MHPHEYIRHDDEAASRLAPKGVDGRFDFYVAMNGCNDGHDLE
Ga0318542_104574251	3300031668	Soil	MRERESTIRQAHKAASRLAPKGDEGRFDFSIAMNGRDD
Ga0307474_110693842	3300031718	Hardwood Forest Soil	YDGPAMRDHEYIRHDDKTGSRLAPKGIDGSFDFYVAMNGRSDWHDLE
Ga0307474_116398661	3300031718	Hardwood Forest Soil	VDGIRRDDRAASRLPPKVHDGRFDFYVAMNGHGDWRDLERPGRRLYSQ
Ga0306917_114374722	3300031719	Soil	MNLRLFHENIWHDDKAASRLAPEGDDGRFDLSVAMNGRSDRHDLE
Ga0306918_103020101	3300031744	Soil	MRVRECIRHDDKAASWLARKGDEGRFDFYVAMNGRNDWHDPERPGRRFK
Ga0306918_106085642	3300031744	Soil	MHGRECIRYDDKAASRLAPNGDDGRFDFYVAMNGRNDWLDLE
Ga0306918_110023472	3300031744	Soil	MRHRECIWHDKPASRLAPKGDDGRFHFYVAMNVRND
Ga0318546_113175101	3300031771	Soil	MRDHEYFRHDDKAASPFAPKGDDGRFDFYVAMNGRNDWHDLE
Ga0318548_105312441	3300031793	Soil	MLSREIIRHDDKAGSRLASKGRDGRFDFYVAMNGCSDWHDLERPGRRLK
Ga0318576_103023322	3300031796	Soil	YDRRAARGREYIRQDDKATSRLAPEGDDSRFDLYVVMNGRDDWHEAE
Ga0318511_103217582	3300031845	Soil	MRDHEYIRYDDKAASRLAPKGRHGRFDLYVVMNGRNIRHDLE
Ga0318495_105159742	3300031860	Soil	HDRRVMRARECIRHDDKTASRLAPQGDDGRFDFFVAMNGRNDWLDLE
Ga0306919_102132383	3300031879	Soil	MRDHEYIRQDDKAASRLAPKGDDGRFDLHVAMNERNDWHH
Ga0306925_102875113	3300031890	Soil	MHDHESIWHDNKAASRLAPKGRDGGFDFFVAMNGRIDCRKLE
Ga0306925_103486412	3300031890	Soil	MRDREYIRHDNKAASRLASEGDDGRFDLYVAMNGRNDWHDLERPAAVSK
Ga0306925_108705791	3300031890	Soil	MRCHECIRQDDKAAAQLAPEGDDGRIDLYVAANGR
Ga0306925_117763441	3300031890	Soil	MHQGEGIRHDDKAASSFAPKSDDGCFDLYVAMNGRND
Ga0306925_122067152	3300031890	Soil	MRDDEYIRHDDKPTSRLAPKVPNGPFDLYVTANGRNDWNDLECASRRLK
Ga0306923_103517711	3300031910	Soil	MRSREYIRDDDKAAFRLAPKGRDGRFDFYVAMNGRND
Ga0306923_111768302	3300031910	Soil	MHDHEYIRMDDKAASRLAPKGHDGRFDLYVAMNGLNDRLDLE
Ga0306923_113857902	3300031910	Soil	MHVHESVWHDDKTASRLAPKGDNGRFDFYLAMNGRNDRYDLE
Ga0306923_118767142	3300031910	Soil	MCERPSIRHDDKAASRLAAKGDDGRFDLYVAMNGRGDR
Ga0306923_119473501	3300031910	Soil	RPMHVRESIRHEGKAASRLAPKGVDGCFDLCVAVNGRNDWRDFE
Ga0306923_119771352	3300031910	Soil	MHERRHIWHDDKAASRLAPMGDDGRFDFSVAMNRRNERHNLE
Ga0306923_125577101	3300031910	Soil	MCGHESTTRQDDKAASRLAPKGDDGRFDLSVAMNGRNDWHD
Ga0306921_111268532	3300031912	Soil	MHLCEYIRHDDKAASGLAPKGADGRFNLCVAVDGRDGWRDLE
Ga0306921_113553081	3300031912	Soil	IRHDDKAASRLAPLGDDRRFDLHVAMNGRSDWHDLE
Ga0310916_111185782	3300031942	Soil	MRVRKSIRDEDKAASRLAPKGRDGRFDLFVAMNGRSDWLDLE
Ga0310910_110424371	3300031946	Soil	MRARECIRHDDKTASRLAPQGDDGRFDFFVAMNGRNDWLDLE
Ga0310909_103387463	3300031947	Soil	MRERECIRGNDKAAARLAPKGRDGRSDLCVAMNGRGDWHDR
Ga0310909_109731183	3300031947	Soil	VLEREYIWRDDQAASRLAPKGDDGRFDFYVSMNGRSDWQD
Ga0310909_110384062	3300031947	Soil	MRVQEYIRDDDKAASRLAPKGDDGRFDFCFVVNVRNDWLDLE
Ga0310909_113625222	3300031947	Soil	MRNREYIRDDDKAASRLAPKGDDGRFDFCITMDGRRDR
Ga0310909_114577682	3300031947	Soil	FRHNDKAASRLARKGDDGRFDLCFAMNGGSDCRDLE
Ga0306926_109362811	3300031954	Soil	MHGHECIPHNDEATSRLARKGNDGRFDLYVAMNGRSD
Ga0306926_118151932	3300031954	Soil	MHERERIPRDDKAASRLAPKGDDGRFDFCVAMNGRNDWLDLELPGRRVK
Ga0306926_124488572	3300031954	Soil	MRVDESIRSDDKAASRVAPKGDDGRFDFYVAVNGRSD
Ga0306922_106439742	3300032001	Soil	DRQAMRHRECIWHDKPASRLAPKGDDGRFHFYVAMNVRND
Ga0306922_111694941	3300032001	Soil	VMHGRERIRHDDKAAPRLAPKGDDGRFDFSVAVNGRNDWRDLERPGRRLK
Ga0306922_118808002	3300032001	Soil	MHDHEYIRHYDKAASRLAPQGDDGRFDFYVAMNGRSDWRNLE
Ga0306922_119640451	3300032001	Soil	MPDHECIRDDDKAASRFAPKGDDGRFDFYVAMNGRSDW
Ga0310911_105523862	3300032035	Soil	MRDRESIRDDDKAASRLAPKGDDGSFNFYVATNWRNDWHDLE
Ga0310911_108133842	3300032035	Soil	MYDREQIRHEGEAASRLAPKGDDGRFDFYVAVNGRNDWHDLERPGRRLKCRHKIRYGSG
Ga0318549_105071032	3300032041	Soil	MHLHEYIPHNDKAAFRLAPKCVDGRLDFCVAMNGRRG
Ga0318514_106158032	3300032066	Soil	MDDKAASRLAPKGDDGRFDLCVAVNGRNDWRDLERRSRRLN
Ga0318553_106833092	3300032068	Soil	MHPADDKTASRLMPKGDDGRFDFYVAVNGRSDGHDLE
Ga0306924_101245691	3300032076	Soil	AMHVRERIRHNDKAASRLTPKGDDGCFDLYVAANGRSDWHDLE
Ga0306924_107462151	3300032076	Soil	MREHECIRHGDKPASRLAPKGDDGRFDFYVAVNGRSDW
Ga0306924_112390472	3300032076	Soil	MHDRERIRHDNKAPSRLAPQGDDGRFDFYIAMNWHCDWDDLE
Ga0306920_1003574223	3300032261	Soil	MHAHECIGHDDKAASRLAPKGRDGRFDFYVVMNGRHDQVDL
Ga0306920_1005797352	3300032261	Soil	MRGRESTRSYDDKAASRLAPQGDDGRFDLYVAMNGRNDWLDLE
Ga0306920_1006945511	3300032261	Soil	MRGGEYIRHGDEAASRLAPKGRNGRFDFYVAVNGRNDWDDLE
Ga0306920_1013569432	3300032261	Soil	VSGYEPIRHDNKAATRLAPQGDDGRFDLCVAVNVRN
Ga0306920_1022691212	3300032261	Soil	MHNHEYIRVDDKAASRLAPKGLDGLFDLFVTMNGRDDWLDLE
Ga0306920_1023682481	3300032261	Soil	MREHESIRHDDKAASRRTPKGDHGRFDLYVAVNGRHDGH
Ga0306920_1024468773	3300032261	Soil	YDRHAMHERKVIRHDDKAASRLAPKGDDGRFDFCVAVNECSDRHDLE
Ga0306920_1031106063	3300032261	Soil	MHVREHIRHDDKPASPLAPNGDDGGFDFSIAMNGRNDCCYLE
Ga0306920_1035542142	3300032261	Soil	MPDHECIRDDDKAASRFAPKGDDGRFDFYVAMNGRSD
Ga0306920_1036253181	3300032261	Soil	MRGHEYIRYDDKAASRFAPKGDDGRFDLPIATSGRSG
Ga0306920_1037207151	3300032261	Soil	MRDREWIGNDDKAASRLAPEGDDGRFDFCVAVNGRSDWHDLE
Ga0306920_1040109382	3300032261	Soil	MHEREYIRHDDKAASRLAPKGDDGRFDLYVAMKVRNNWLDLE
Ga0306920_1042812341	3300032261	Soil	MNERERIRHDEKAASRFAKGDDSRFDLYVAVNGRRDWRDLE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F083447

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences