Metagenome / Metatranscriptome Family F083411

Basic Information
Family ID	F083411
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	59 residues
Representative Sequence	VDITYFNWYEIESKARKDQAAILILTFAQTKLYNPRTTKGLMTALKINHIPIHL
Number of Associated Samples	99
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	91
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (100.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous (15.929 % of family members)
Environment Ontology (ENVO)	Unclassified (61.062 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (87.611 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 42.59% β-sheet: 9.26% Coil/Unstructured: 48.15%
Feature Viewer

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Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF00271	Helicase_C	67.26
PF04851	ResIII	13.27
PF13578	Methyltransf_24	6.19
PF14572	Pribosyl_synth	0.88
PF03332	PMM	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG0561	Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases	Coenzyme transport and metabolism [H]	0.88

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	91.15%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	6.19%
Freshwater	Environmental → Aquatic → Freshwater	1.77%
Sediment	Environmental → Aquatic → Sediment	0.89%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	24.78%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	17.70%
Unclassified	Environmental → Aquatic → Marine → Unclassified	15.04%
Strait	Environmental → Aquatic → Marine → Strait	11.50%
Oceanic	Environmental → Aquatic → Marine → Oceanic	7.08%
Pelagic	Environmental → Aquatic → Marine → Pelagic	7.08%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	6.19%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	6.19%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.89%
River	Environmental → Aquatic → Freshwater → River	0.89%
Inlet	Environmental → Aquatic → Marine → Inlet	0.89%
Volcanic	Environmental → Aquatic → Marine → Volcanic	0.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	24.78%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	15.04%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	15.04%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	11.50%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	7.08%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	6.19%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	5.31%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	3.54%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	2.65%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	1.77%
Epilimnion	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion	1.77%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	0.89%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	0.89%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	0.89%
Unclassified	Environmental → Aquatic → Marine → Volcanic → Unclassified	0.89%
Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment	0.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	15.93%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	15.04%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	11.50%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	7.08%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	7.08%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	7.08%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	4.42%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	3.54%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	2.65%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	2.65%
Pond Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water	2.65%
Deep Ocean	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean	1.77%
Surface Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater	1.77%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	1.77%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	1.77%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	1.77%
Saline Water And Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment	1.77%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	0.89%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	0.89%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	0.89%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	0.89%
Sackhole Brine	Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine	0.89%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	0.89%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	0.89%
Volcanic Co2 Seep Seawater	Environmental → Aquatic → Marine → Volcanic → Unclassified → Volcanic Co2 Seep Seawater	0.89%
Saline Water And Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water And Sediment	0.89%
Saline Water And Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment	0.89%
Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment	0.89%

Visualization

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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000101	Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010	Environmental	Open in IMG/M
3300000115	Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011	Environmental	Open in IMG/M
3300000116	Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010	Environmental	Open in IMG/M
3300000117	Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010	Environmental	Open in IMG/M
3300001346	Pelagic Microbial community sample from North Sea - COGITO 998_met_01	Environmental	Open in IMG/M
3300001419	Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline water (15 m)	Environmental	Open in IMG/M
3300004448	Marine viral communities from Newfoundland, Canada BC-1	Environmental	Open in IMG/M
3300004457	Marine viral communities from Newfoundland, Canada MC-1	Environmental	Open in IMG/M
3300005512	Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water	Environmental	Open in IMG/M
3300005611	Saline surface water microbial communities from Etoliko Lagoon, Greece	Environmental	Open in IMG/M
3300006026	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA	Environmental	Open in IMG/M
3300006802	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18	Environmental	Open in IMG/M
3300006916	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24	Environmental	Open in IMG/M
3300007116	Seawater microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'bubble' site, waterEBis3	Environmental	Open in IMG/M
3300007236	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_>0.8_DNA	Environmental	Open in IMG/M
3300007345	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30	Environmental	Open in IMG/M
3300007539	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG	Environmental	Open in IMG/M
3300007640	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28	Environmental	Open in IMG/M
3300007960	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG	Environmental	Open in IMG/M
3300007972	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460ABC_3.0um	Environmental	Open in IMG/M
3300009001	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MG	Environmental	Open in IMG/M
3300009059	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.703	Environmental	Open in IMG/M
3300009076	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100511	Environmental	Open in IMG/M
3300009080	Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.759	Environmental	Open in IMG/M
3300009124	Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 72 cmbsf	Environmental	Open in IMG/M
3300009426	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100420	Environmental	Open in IMG/M
3300009428	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55	Environmental	Open in IMG/M
3300009445	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110331	Environmental	Open in IMG/M
3300009449	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110426	Environmental	Open in IMG/M
3300009495	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531	Environmental	Open in IMG/M
3300009505	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110523	Environmental	Open in IMG/M
3300009550	Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome	Environmental	Open in IMG/M
3300010300	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_DNA	Environmental	Open in IMG/M
3300010368	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.2_DNA	Environmental	Open in IMG/M
3300012920	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG	Environmental	Open in IMG/M
3300012928	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St17 metaG	Environmental	Open in IMG/M
3300013195	Marine hypoxic microbial communities from the Gulf of Mexico, USA - 10m_Station7_GOM_Metagenome	Environmental	Open in IMG/M
3300017697	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2)	Environmental	Open in IMG/M
3300017713	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11	Environmental	Open in IMG/M
3300017725	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 21 SPOT_SRF_2011-04-29	Environmental	Open in IMG/M
3300017737	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11 (version 2)	Environmental	Open in IMG/M
3300017741	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 44 SPOT_SRF_2013-06-19	Environmental	Open in IMG/M
3300017743	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 25 SPOT_SRF_2011-08-17	Environmental	Open in IMG/M
3300017744	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 20 SPOT_SRF_2011-02-23	Environmental	Open in IMG/M
3300017749	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15	Environmental	Open in IMG/M
3300017758	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 32 SPOT_SRF_2012-05-30	Environmental	Open in IMG/M
3300017760	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 31 SPOT_SRF_2012-02-16	Environmental	Open in IMG/M
3300017763	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 33 SPOT_SRF_2012-06-20	Environmental	Open in IMG/M
3300017764	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 8 SPOT_SRF_2010-02-11	Environmental	Open in IMG/M
3300017768	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23 (version 2)	Environmental	Open in IMG/M
3300017773	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 9 SPOT_SRF_2010-03-24	Environmental	Open in IMG/M
3300017818	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017824	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018420	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018426	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101402AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018428	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101404AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300019098	Metatranscriptome of marine microbial communities from Baltic Sea - GS684_0p1	Environmental	Open in IMG/M
3300019756	Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW6Sep16_MG	Environmental	Open in IMG/M
3300020173	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041408US metaG (spades assembly)	Environmental	Open in IMG/M
3300020207	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101406AT metaG (spades assembly)	Environmental	Open in IMG/M
3300020347	Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)	Environmental	Open in IMG/M
3300020385	Marine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965)	Environmental	Open in IMG/M
3300020403	Marine microbial communities from Tara Oceans - TARA_B100000085 (ERX556015-ERR599145)	Environmental	Open in IMG/M
3300020414	Marine microbial communities from Tara Oceans - TARA_B100000035 (ERX556019-ERR599028)	Environmental	Open in IMG/M
3300020437	Marine microbial communities from Tara Oceans - TARA_B100000282 (ERX555906-ERR599074)	Environmental	Open in IMG/M
3300020442	Marine microbial communities from Tara Oceans - TARA_B100002019 (ERX556121-ERR599162)	Environmental	Open in IMG/M
3300021378	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO131	Environmental	Open in IMG/M
3300021389	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO127	Environmental	Open in IMG/M
3300021957	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D	Environmental	Open in IMG/M
3300021958	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D	Environmental	Open in IMG/M
3300021960	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9D	Environmental	Open in IMG/M
3300021964	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34D	Environmental	Open in IMG/M
3300022929	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG	Environmental	Open in IMG/M
3300022939	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101412BT metaG	Environmental	Open in IMG/M
3300023084	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405CT metaG	Environmental	Open in IMG/M
3300023105	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101408AT metaG	Environmental	Open in IMG/M
3300023108	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101403AT metaG	Environmental	Open in IMG/M
3300023109 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MG	Environmental	Open in IMG/M
3300023175	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101402AT metaG	Environmental	Open in IMG/M
3300023176	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG	Environmental	Open in IMG/M
3300023180	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG	Environmental	Open in IMG/M
3300025084	Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG (SPAdes)	Environmental	Open in IMG/M
3300025276	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)	Environmental	Open in IMG/M
3300025655	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300025674	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300025687	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300025712	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110321 (SPAdes)	Environmental	Open in IMG/M
3300025769	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (SPAdes)	Environmental	Open in IMG/M
3300025806	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025815	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025849	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607 (SPAdes)	Environmental	Open in IMG/M
3300025890	Pelagic Microbial community sample from North Sea - COGITO 998_met_08 (SPAdes)	Environmental	Open in IMG/M
3300026187	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MG (SPAdes)	Environmental	Open in IMG/M
3300027190	Estuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.733 (SPAdes)	Environmental	Open in IMG/M
3300027704	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNA (SPAdes)	Environmental	Open in IMG/M
3300031519	Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2	Environmental	Open in IMG/M
3300031658	Marine microbial communities from Ellis Fjord, Antarctic Ocean - #78	Environmental	Open in IMG/M
3300031785	Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-25_MG	Environmental	Open in IMG/M
3300034418	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v4)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOSum2010_101923123	3300000101	Marine	MKITYFNWYEIKLRARRDKSAILILTFAQTPLYNTRTTKG
DelMOSum2010_102019612	3300000101	Marine	VGITYFNWYEILSKARKDQTAILILTFAQTSLYNPYTTKGLMKALKINHIPIHLF
DelMOSum2011_100843193	3300000115	Marine	MKITYFNWYEIKLRARRDKSAILILTFAQTPLYNTRT
DelMOSpr2010_100431204	3300000116	Marine	VDTTFFNWYEIKLRARRDKSAILILTFAQTPLYNTRTTKGLMRVLKINH
DelMOWin2010_100648513	3300000117	Marine	VDTTFFNWYEIKLRARRDKSAILILTFAQTPLYNTRTTKGLMRVLK
JGI20151J14362_101663721	3300001346	Pelagic Marine	VDIIYFNWYELVAKARKDQAAILVLAFAQTKLYNARTTKGLMKALNINHIPLFLFTTGLL
JGI11705J14877_101630021	3300001419	Saline Water And Sediment	VDITYFNWYEIESKARKDQAAILILTFAQTKLYNPRTTKGLMTALKINH
Ga0065861_11806962	3300004448	Marine	VDIIYFNWYELVAKARKDQAAILVLAFAQTKLYNARTTKGLM
Ga0066224_12430231	3300004457	Marine	MSKARKDQSAILILTFAQTKLYNPYTTKGLMKALNINHIPIHLFSTGLLEQKKDRLVCNYKTEEPMSYFKNPWFL
Ga0074648_11506942	3300005512	Saline Water And Sediment	VDITYFNWYEIESKARRDQAAILILTFAQTKLYNPYTTKGLMKALNINHIPVFLFTAGLL
Ga0074648_12157972	3300005512	Saline Water And Sediment	MEITYFNWFEITSKARKDQAAILILTFAQTKLYNPYTTKGLMKALNINHIPVHLFTTGLL
Ga0074647_10341732	3300005611	Saline Water And Sediment	VDITYFNWYEIESKARRDQAAILILTFAQTKLYNPYTTKGLMKALNINHIPVFLF
Ga0075478_102741992	3300006026	Aqueous	VDIIYFNWYELVAKARKDQAAILVLAFAQTKLYNARTTKG
Ga0070749_105045241	3300006802	Aqueous	VDIIYFNWYELVAKARKDQAAILVLAFAQTKLYNARTTKGLMKALNINHVPLFLFTTG
Ga0070750_104628861	3300006916	Aqueous	VDIIYFNWYELVAKARKDQAAILVLAFAQTKLYNARTTKGLMKALNINHIPLFLFTTSLLEQKKDRL
Ga0070750_104969681	3300006916	Aqueous	VGITYFNWYEILSKARKDQTAILILTFAQTSLYNPYTTKGLMKALKINHIPIH
Ga0101667_11067562	3300007116	Volcanic Co2 Seep Seawater	LLDNKQKDWNGISNVDIIYFNWYELVSKSRKDQTAILILTFAQTSLYNPYTTKGLMKALKINHIPVHLFTTGLLEQKKDRLVCNYKTQ
Ga0075463_102499772	3300007236	Aqueous	VDIIYFNWYELVAKARKDQAAILVLAFAQTKLYNARTTKGLMKALNINHV
Ga0070752_12445131	3300007345	Aqueous	VDTIYFNWYEIESKARKDQAAILILTFAQTKLYNPRTTKGLMTALKINHIPVHL
Ga0099849_12656611	3300007539	Aqueous	VDTIYFNWYEIESKARKDQAAILILTFAQTKLYNPRTTKGLMTALKINH
Ga0070751_12322251	3300007640	Aqueous	VDTIYFNWYEIESKARKDQAAILILTFAQTKLYNPRTTKGLMTALKINHIPVHLFTNGILEQTEKGLECHYKTIEPMSYF
Ga0099850_10801591	3300007960	Aqueous	VDITYFNWYEIESKARKDQAAILILTFAQTKLYNPRTTKGLMTALKINHIPIHL
Ga0099850_10860481	3300007960	Aqueous	MSKMEITYFNWYEIESKARKDQAAILILTFAQTKLYNPRTTKGLMTALKINHIPVHLFTT
Ga0099850_11845511	3300007960	Aqueous	VDTTYFNWYEIESKARKDQAAILILTFAQTKLYNPRTTKGLMTALKINHIPVH
Ga0105745_10450851	3300007972	Estuary Water	VDTTFFNWYEIKLRARRDKSAILILTFAQTPLYNTITTKGLMKVLKINHIPIHLF
Ga0102963_12106812	3300009001	Pond Water	VDIIYFNWYELVAKARKDQAAILVLAFAQTKLYNARTTKGLMKALNINHIPLFLFTTGLLEQKKDRLVCNYKTLE
Ga0102963_14243512	3300009001	Pond Water	MEKVYFNWYELLSKARKDQTAILILIFAQTSLYNPYTTKGLMRALKINHIPAHLFTTGLLEQKKEGLVCNYKTEEPMSYFKNP
Ga0102830_11213863	3300009059	Estuarine	MKITYFNWYEIKLRARRDKSAILILTFAQTPLYNTRTTKGLMK
Ga0115550_12216802	3300009076	Pelagic Marine	VDIIYFNWYELLSKARKDQTAILILAFAQTKLYNARTTKGLMGALKINHIPMHLFTTGLL
Ga0102815_106347971	3300009080	Estuarine	VDTTFFNWYEIKLRARRDKSAILILTFAQTPLYNTRTTKGLMKV
Ga0118687_102394552	3300009124	Sediment	VDTIYFNWYELLSKARKDQTAILILAFAQTKLYNARTTKGLMGALKINHIPV
Ga0115547_12080571	3300009426	Pelagic Marine	VDIIYFNWYELLSKARKDQTAILILAFAQTKLYNARTTKGLMGALKINHIPMHLFTTG
Ga0114915_11240953	3300009428	Deep Ocean	MKITYFNWYEIKLRARRDKSAILILTFAQTPLYNTRTTKGLMRVLK
Ga0115553_13284542	3300009445	Pelagic Marine	VDIIHFNWYELVAKARKDQAAILVLAFAQTKLYNARTTKGLMK
Ga0115558_11995852	3300009449	Pelagic Marine	VDIIYFNWYELVAKARKDQAAILVLAFAQTKLYNARTTKGLMKALNINHIP
Ga0115571_11299072	3300009495	Pelagic Marine	VDTTFFNWYEIKLRARRDKSAILILTFAQTPLYNTRTTKGLMKVLK
Ga0115564_105012171	3300009505	Pelagic Marine	VDTTFFNWYEIKLRARRDKSAILILTFAQTPLYNTRTTKGLMKVLKINHIPIHL
Ga0115013_106655242	3300009550	Marine	VDIIYFNWYELVSKARKDQAAILVLAFAQTKLYNARTTKGLMKALNVNHIPMFLF
Ga0129351_10445603	3300010300	Freshwater To Marine Saline Gradient	VDTIYFNWYEIESKARKDQAAILILTFAQTKLYNPRTTKGLMTALKINHIPVH
Ga0129351_13006822	3300010300	Freshwater To Marine Saline Gradient	VDITYFNWYEIESKARKDQAAILILTFAQTKLYNPRTTKGLMTALKINHIP
Ga0129324_102762221	3300010368	Freshwater To Marine Saline Gradient	VDTIYFNWYEIESKARKDQAAILILTFAQTKLYNPRTTKGLMTALKINHIPVHLF
Ga0160423_105697011	3300012920	Surface Seawater	MFYFNWFEILAKARKDQTAILILTFAQTSLYNPYTTKGLMKALKINHIP
Ga0163110_110411672	3300012928	Surface Seawater	VDIIYFNWYELVSKARKDQTAILILTFAQTSLYNPYTTKGLMKALKINHIPVHLFTTGLLEQKKD
Ga0116815_10236361	3300013195	Marine	VDIIYFNWYELLSKARKDQTAILILAFAQTSLYNARTTKGLMGALKINHIPIHLFTTGLLEQKT*
Ga0180120_103534872	3300017697	Freshwater To Marine Saline Gradient	VDTTFFNWYEIKLRARRDKSAILILTFAQTPLYNTRTTK
Ga0181391_11059192	3300017713	Seawater	VDIIYFNWYELVAKARKDQAAILVLAFAQTKLYNAKTTKGLKKALNINHIPLFLFTAGLLEQK
Ga0181398_10834231	3300017725	Seawater	MIFYFNWYELMRKARKDQTGILILTFAQTSLYNPYTTTGLMKALKINHIPAHLFTTGILEQKKGKLVCNYKTEEP
Ga0187218_11719112	3300017737	Seawater	VDIIYFNWYELVAKARKDQAAILVLAFAQTKLYNARTTKGLMKALNVNHIPLFLFTAGLLEQK
Ga0181421_11501872	3300017741	Seawater	VDIIYFNWYELLSKARKDQTAILILAFAQTKLYNARSTKGLMGALKINHIPM
Ga0181402_11052672	3300017743	Seawater	VDITYFNWYELVAKARKDQAAILVLAFAQTKLYNARTTKGLMKALNINHIPLFLFTTGLLEQKKDRLVCNYKTLEPMS
Ga0181397_11330552	3300017744	Seawater	VDIIYFNWYELLAKARKDQAAILVLAFAQTKLYNARTTKGLMKALNINHIPLFLFTTGLLEQKKDRL
Ga0181392_11636902	3300017749	Seawater	VDIIYFNWYELVAKARKDQAAILVLAFAQTKLYNARTTKGLMKALNINHIPLFLFTTGLLEQKKDRLVC
Ga0181409_11438782	3300017758	Seawater	VDIIYFNWYELLSKARKDQTAILILAFAQTKLYNARSTKGLMGALKINHIPMHLFTTGLLEQKKEKLVCNYQTEEPMSY
Ga0181408_11374631	3300017760	Seawater	VDIIYFNWYELLAKARKDQAAILVLAFAQTKLYNARTTKGLMKALNINHIPLFLFTTGLLEQ
Ga0181410_11333391	3300017763	Seawater	VDIIYFNWYELLSKARKDQTAILILAFAQTKLYNARSTKGLMGALKINHIPMHLFTTGLLEQKKEKLVCNYQREEPMSYFKNPWF
Ga0181385_11158513	3300017764	Seawater	VDIIYFNWYELLSKARKDQTAILILAFAQTSLYNARTTKGLMGALKINHIPMHLFTTGLLEQKREKLICNYRTIEPMSY
Ga0187220_11560302	3300017768	Seawater	VDIIYFNWYELVSKARKDQTAILILAFAQTSLYNARTTKGLMGALKINHIPMHLFTTGLLEQKREKLICNYRTIE
Ga0181386_10112405	3300017773	Seawater	VDIIYFNWYELLSKARKDQTAILILAFAQTKLYNARTTKGLMGALKINHIPMYLFTTGLLEQKKEK
Ga0181565_103490091	3300017818	Salt Marsh	VDITYFNWYELVSKARKDQTAILILAFAQTSLYNARTTKGLMGALKINHIPMHLF
Ga0181552_103370302	3300017824	Salt Marsh	VDITYFNWYELVSKARKDQTAILILAFAQTSLYNARTTKGLMGALKINHIPMHLFSTGLLEQKREKLVCNYRTIEPMSYFKNPWFL
Ga0181563_102963761	3300018420	Salt Marsh	VDITYFNWYELVSKARKDQAAILILTFAQTKLYNPKTSKGLMRALNINHIPMHLFSTG
Ga0181563_104992232	3300018420	Salt Marsh	VDITYFNWYEIESKARKDQAAILILTFAQTKLYNPRTTKGLMTALKINHIPIHLFTAGILEQTEKGLECH
Ga0181566_101108284	3300018426	Salt Marsh	VDITYFNWYELVSKARKDQTAILILAFAQTSLYNVRTTKGLMGALKINHIPMHLFTTGLLEQKREKL
Ga0181568_113599532	3300018428	Salt Marsh	VAITYFNWYELLSKSRKDQTAILILTFAKTKLYNPFTTKGLMKALKINHIPIHLFTTGLLEQKKDRLVCNYKTEEPMSYFKNPYFLTQN
Ga0188859_10086842	3300019098	Freshwater Lake	VDTIYFNWYELLSKARKDQTAILILAFAQTKLYNARTTKGLMGALKINHIPIHLFTTGLLEQKKEKLVCNYQ
Ga0194023_10504922	3300019756	Freshwater	VDTTYFNWYEIESKARKDQAAILILTFAQTKLYNPRTTKGLMTALKINHIPVHLFTTGILEQTEKGLECHYKTQEPMSYFI
Ga0181602_102175581	3300020173	Salt Marsh	VDITYFNWYEIESKARKDQAAILILTFAQTKLYNPRTTKGLMTA
Ga0181570_103647752	3300020207	Salt Marsh	VDITYFNWYELVSKARKDQTAILILAFAQTSLYNVRTTKGLMGALKINHIPMHLFTTGLLEQKREKLLCNYRTI
Ga0211504_11038482	3300020347	Marine	VDIIYFNWYELLSKARKDQTAILILAFAQTKLYNARTTKGLMGALKINH
Ga0211677_102874271	3300020385	Marine	VDTTFFNWYEIKLRARRDKSAILILTFAQTPLYNTRTTKGLMKVLKINHIPIHLFVSGILEQKTEK
Ga0211532_102578091	3300020403	Marine	MMSVVYFNWYELLSKARKDQTAILILTFAQTSLYNPYTTKGLMKALKINHIPIHLFTWGILEQKKDSLVCHYKTQEP
Ga0211523_100710631	3300020414	Marine	VDIIYFNWYELVAKARKDQAAILVLAFAQTKLYNARTTKGLMKALNVNHIPMF
Ga0211539_103112281	3300020437	Marine	VGIIYFNWYELLSKARKDQTAILILTFAQTSLYNPYTTKGLMKALKINHIPVHLFTTGLLEQKKDRLVCN
Ga0211559_104064881	3300020442	Marine	VFYFNWFEILAKARKDQTAILILTFAQTSLYNPYTTKGLMKALKIN
Ga0211559_104086912	3300020442	Marine	MFYFNWYEILGKARKDQTAILILTFAQTSLYNPYTTKGLMKALKINHIPVHLFTTGLLEQKKDR
Ga0213861_104979611	3300021378	Seawater	VDIIYFNWYELLSKARKDQTAILILAFAQTKLYNARTTKGLMGALKINHIPMHLFTTGLLEQKKEKLVCNYQTEEPMSYFKNPWF
Ga0213868_104025921	3300021389	Seawater	VDITYFNWYELVSKARKDQTAILILAFAQTSLYNAKTTKGLMGALKINHIPMHLF
Ga0222717_100789254	3300021957	Estuarine Water	VDITYFNWYEIESKARKDQAAILILTFAQTKLYNPRTTKGLMTALKINHIPVHLFTTGILEQTEKGLECHYKTIEPM
Ga0222717_103483711	3300021957	Estuarine Water	MKITYFNWYEIKLRARRDKSAILILTFAQTPLYNTRTTKGLMKVLKI
Ga0222717_105564062	3300021957	Estuarine Water	VDTTFFNWYEIKLRARRDKSAILILTFAQTPLYNTRTTKGLMKVLKI
Ga0222718_102520121	3300021958	Estuarine Water	MEKVYFNWYELLSKARKDQTAILILIFAQTSLYNPYTTKGLMRALKINHIPAHL
Ga0222718_104507242	3300021958	Estuarine Water	VDIIYFNWYELVSKARKDQTAILILTFAQTSLYNPYTTKGLMKALKINHIPIH
Ga0222715_104025631	3300021960	Estuarine Water	VDTIYFNWYEIESKARKDQAAILILTFAQTKLYNPRTTKGLMTALKINHIPVHLFTTGILEQTEKGLECHYKTQEPMSYFRNPWFLTH
Ga0222715_105646802	3300021960	Estuarine Water	VDTTYFNWYEIESKARKDQAAILILTFAQTKLYNPRTTKGLMTAL
Ga0222719_102805723	3300021964	Estuarine Water	MSKMEITYFNWYEIESKARKDQAAILILTFAQTKLYNPKTTKGLMTALKINHIPVHLFTTGILE
Ga0255752_102835862	3300022929	Salt Marsh	VDIIYFNWYELVSKARKDQTAILILAFAQTSLYNARTTKGLMGALKINHIPIHLFTTGLLEQKKEKLVCNYRTLEPM
Ga0255754_103143852	3300022939	Salt Marsh	VDITYFNWYELVSKARKDQTAILILAFAQTSLYNARTTKGLMGALKINHIPMHLFTTGLLEQKREKLICNYRTVEPMSYFKNPWFL
Ga0255778_103280942	3300023084	Salt Marsh	VDITYFNWYEIESKARKDQAAILILTFAQTKLYNPRTTKGLMTAL
Ga0255782_102532351	3300023105	Salt Marsh	VDIIYYNWYELVAKARKDQAAILVLAFAQTKLYNARTTKGLMKALNINHIPMFLFTTGLLEQKKDRLVCNYKTI
Ga0255784_102307301	3300023108	Salt Marsh	VDIIYFNWYELVAKARKDQAAILVLAFAQTKLYNARTTKGL
(restricted) Ga0233432_102866113	3300023109	Seawater	MDTTFFNWYEIKLRARRDKSAILILTFAQTPLYNT
Ga0255777_103858752	3300023175	Salt Marsh	VDITYFNWYELVSKARKDQAAILILTFAQTKLYNPKTSKGLMRALNINHIPMHLFSTGLLEQKKDRLVC
Ga0255772_103350322	3300023176	Salt Marsh	VDTTYFNWYELTSKARKDQTAILILTFAQTKLYNPYTTKGLMKALNINHIPMFLFTTGL
Ga0255768_102229161	3300023180	Salt Marsh	MEQAVTYFNWYELTSKARKDQAAILILTFAQTKLYNPYTTKGLMKALNINHI
Ga0255768_104178681	3300023180	Salt Marsh	MSKMEITYFNWYEIESKARKDQAAILILTFAQTKLYNPRTTKGLMTA
Ga0208298_10820211	3300025084	Marine	VDTTFFNWYEIKLRARRDKSAILILTFAQTPLYNTRTTKGLMKVLKIN
Ga0208814_10018821	3300025276	Deep Ocean	MKITYFNWYEIKLRARRDKSAILILTFAQTPLYNTRTTKGLMRVLKI
Ga0208795_10695043	3300025655	Aqueous	MSKMEITYFNWYEIESKARKDQAAILILTFAQTKLYNPRTTKGLMTALKINHIPVHLFTTGI
Ga0208162_11757611	3300025674	Aqueous	VDIIYFNWYELLSKARKDQTAILILAFAQTKLYNARTTKGLM
Ga0208019_11529742	3300025687	Aqueous	VDTIYFNWYEIESKARKDQAAILILTFAQTKLYNPRTTKGLMTALKINHIPVHLFTTGILEQTEKG
Ga0209305_10999602	3300025712	Pelagic Marine	VDIIYFNWYELLSKARKDQTAILILAFAQTKLYNARTTKGLMGALKINHIPMHLFTTGLLEQKKEKLVCN
Ga0208767_12768331	3300025769	Aqueous	VDIIYFNWYELLSKARKDQTAILILAFAQTKLYNARTTKGLMGALKINHIPMHLFTTGLLEQKKEKLVCNYQTEE
Ga0208545_10663752	3300025806	Aqueous	VDTTYFNWHEIKLRARRDKAAILILTFAQTPLYNVRTTKG
Ga0208785_11188732	3300025815	Aqueous	VDITYFNWYELTSKARKDQAAILILAFAQTKLYNARTTKGLMKALNINHIP
Ga0209603_10549244	3300025849	Pelagic Marine	VDTTFFNWYEIKLRARRDKSAILILTFAQTPLYNTRTTKGLMK
Ga0209631_103010191	3300025890	Pelagic Marine	MKITYFNWYEIKLRARRDKSAILILTFAQTPLYNTRTT
Ga0209929_11122672	3300026187	Pond Water	VDIIYFNWYELVAKARKDQAAILVLAFAQTKLYNARTTKGLMKALNINHIPLFLFTTGLLEQKKDRLVCNYKTIEPM
Ga0208674_10701181	3300027190	Estuarine	MKITYFNWYEIKLRARRDKSAILILTFAQTPLYNTRTTKGLMKVLKINHIPIHLFTSGILEQKT
Ga0209816_11908732	3300027704	Marine	VDITFFNWYEIKLRARRDKSAILILTFAQTPLYNTRTTKGLMRVLK
Ga0307488_102315302	3300031519	Sackhole Brine	VDTTFFNWYEIKLRARRDKSAILILTFAQTPLYNTRTTKGLMRVLKI
Ga0307984_10460402	3300031658	Marine	VDITFFNWYEIKLRARRDKSAILILTFAQTPLYNTRTTKGLMRVLKINHIPIHLFTSGI
Ga0310343_107541001	3300031785	Seawater	MELHPEITYFNWYELISKARKDQSAILILTFAQTKLYNPYTTKGLMKALNINHIP
Ga0348337_167195_2_163	3300034418	Aqueous	MDTIYFNWYEIESKARKDQAAILILTFAQTKLYNPRTTKGLMTALKINHIPVHL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F083411

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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