Metagenome / Metatranscriptome Family F083402

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F083402
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	91 residues
Representative Sequence	MSESNGDLLIGGDRIKHLHVELEDEQPQAGSCEWVLAGHLHLTREQSQLLETDRPYRLLLADGRAGQVIVSRIAADGKPDELLADFLPKCKK
Number of Associated Samples	68
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	73.45 %
% of genes near scaffold ends (potentially truncated)	32.74 %
% of genes from short scaffolds (< 2000 bps)	92.04 %
Associated GOLD sequencing projects	64
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.76

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (56.637 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere (12.389 % of family members)
Environment Ontology (ENVO)	Unclassified (40.708 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (57.522 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 3.33% β-sheet: 49.17% Coil/Unstructured: 47.50%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.76
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.76
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
b.45.1.4: MTH863-like	d2ptfa1	2ptf	0.69004
b.45.2.1: PilZ domain	d3kyga2	3kyg	0.68167
b.45.2.2: PilZ domain-associated domain	d3kyga1	3kyg	0.66234
b.45.1.0: automated matches	d3pfta_	3pft	0.66085
b.45.2.1: PilZ domain	d5xlyb_	5xly	0.66045

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF13560	HTH_31	7.08
PF02775	TPP_enzyme_C	7.08
PF00487	FA_desaturase	4.42
PF00583	Acetyltransf_1	1.77
PF07394	DUF1501	1.77
PF13414	TPR_11	0.88
PF13366	PDDEXK_3	0.88
PF13432	TPR_16	0.88
PF13516	LRR_6	0.88
PF07158	MatC_N	0.88
PF09492	Pec_lyase	0.88
PF13732	DUF4162	0.88
PF01243	Putative_PNPOx	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG1398	Fatty-acid desaturase	Lipid transport and metabolism [I]	4.42
COG3239	Fatty acid desaturase	Lipid transport and metabolism [I]	4.42
COG0471	Di- and tricarboxylate antiporter	Carbohydrate transport and metabolism [G]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.64 %
All Organisms	root	All Organisms	43.36 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.64 %
cellular organisms	root	All Organisms → cellular organisms	43.36 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.64 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	43.36 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.64 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	27.43 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.64 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	27.43 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.64 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	18.58 %
unclassified Planctomycetota	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.64 %
Planctomycetales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	12.39 %
Pirellulales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales	5.31 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.64 %
Planctomycetaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	10.62 %
Pirellulaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae	5.31 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.64 %
Anatilimnocola	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Anatilimnocola	4.42 %
unclassified Planctomycetaceae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae	2.65 %
Blastopirellula	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Blastopirellula	0.88 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.64 %
Anatilimnocola	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Anatilimnocola	4.42 %
Planctomycetaceae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	2.65 %
Blastopirellula marina	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Blastopirellula → Blastopirellula marina	0.88 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2162886006\|SwRhRL3b_contig_3695806	All Organisms → cellular organisms → Bacteria	839	Open in IMG/M
3300000956\|JGI10216J12902_109051204	All Organisms → cellular organisms → Bacteria	925	Open in IMG/M
3300001431\|F14TB_102315120	Not Available	669	Open in IMG/M
3300004114\|Ga0062593_100443234	Not Available	1180	Open in IMG/M
3300004114\|Ga0062593_101516034	Not Available	723	Open in IMG/M
3300004114\|Ga0062593_102261531	Not Available	610	Open in IMG/M
3300004156\|Ga0062589_100154789	All Organisms → cellular organisms → Bacteria	1579	Open in IMG/M
3300004157\|Ga0062590_100700560	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	912	Open in IMG/M
3300004157\|Ga0062590_102109214	Not Available	588	Open in IMG/M
3300004463\|Ga0063356_100003004	All Organisms → cellular organisms → Bacteria	14100	Open in IMG/M
3300004463\|Ga0063356_100648638	All Organisms → cellular organisms → Bacteria	1439	Open in IMG/M
3300004463\|Ga0063356_101728051	All Organisms → cellular organisms → Bacteria	937	Open in IMG/M
3300004463\|Ga0063356_102870512	Not Available	742	Open in IMG/M
3300004463\|Ga0063356_104633696	Not Available	591	Open in IMG/M
3300004463\|Ga0063356_104737772	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	585	Open in IMG/M
3300004479\|Ga0062595_102408951	Not Available	522	Open in IMG/M
3300005294\|Ga0065705_10104267	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	25728	Open in IMG/M
3300005294\|Ga0065705_10359519	Not Available	942	Open in IMG/M
3300005295\|Ga0065707_10161818	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1556	Open in IMG/M
3300005332\|Ga0066388_100250922	Not Available	2408	Open in IMG/M
3300005332\|Ga0066388_100585090	Not Available	1741	Open in IMG/M
3300005332\|Ga0066388_106151887	Not Available	606	Open in IMG/M
3300005332\|Ga0066388_107555541	Not Available	545	Open in IMG/M
3300005337\|Ga0070682_101237982	Not Available	631	Open in IMG/M
3300005347\|Ga0070668_101895211	Not Available	549	Open in IMG/M
3300005437\|Ga0070710_10024748	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	3171	Open in IMG/M
3300005518\|Ga0070699_101646553	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	588	Open in IMG/M
3300005713\|Ga0066905_102003316	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	537	Open in IMG/M
3300005764\|Ga0066903_101251949	Not Available	1382	Open in IMG/M
3300005764\|Ga0066903_105974494	Not Available	638	Open in IMG/M
3300006791\|Ga0066653_10190047	Not Available	1035	Open in IMG/M
3300006844\|Ga0075428_101768122	All Organisms → cellular organisms → Bacteria	644	Open in IMG/M
3300006844\|Ga0075428_102284678	Not Available	557	Open in IMG/M
3300006854\|Ga0075425_100846425	Not Available	1047	Open in IMG/M
3300006865\|Ga0073934_10167709	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1537	Open in IMG/M
3300006872\|Ga0101947_1055471	All Organisms → cellular organisms → Bacteria	1231	Open in IMG/M
3300009094\|Ga0111539_12100616	Not Available	655	Open in IMG/M
3300009094\|Ga0111539_13518780	Not Available	502	Open in IMG/M
3300009098\|Ga0105245_10990953	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	884	Open in IMG/M
3300009098\|Ga0105245_13278853	Not Available	501	Open in IMG/M
3300009100\|Ga0075418_10212428	All Organisms → cellular organisms → Bacteria	2060	Open in IMG/M
3300009100\|Ga0075418_11671841	Not Available	692	Open in IMG/M
3300009137\|Ga0066709_101533548	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	959	Open in IMG/M
3300009156\|Ga0111538_11367408	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	893	Open in IMG/M
3300009156\|Ga0111538_11979807	Not Available	733	Open in IMG/M
3300009610\|Ga0105340_1080477	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1292	Open in IMG/M
3300009610\|Ga0105340_1384904	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	624	Open in IMG/M
3300009789\|Ga0126307_10811132	Not Available	755	Open in IMG/M
3300010362\|Ga0126377_11600324	Not Available	726	Open in IMG/M
3300011417\|Ga0137326_1169833	Not Available	504	Open in IMG/M
3300011439\|Ga0137432_1013514	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	2303	Open in IMG/M
3300012041\|Ga0137430_1060796	Not Available	1034	Open in IMG/M
3300012159\|Ga0137344_1004940	Not Available	1840	Open in IMG/M
3300012209\|Ga0137379_11504015	Not Available	574	Open in IMG/M
3300012212\|Ga0150985_105192472	All Organisms → cellular organisms → Bacteria	1143	Open in IMG/M
3300012212\|Ga0150985_105561861	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Anatilimnocola	809	Open in IMG/M
3300012212\|Ga0150985_106082245	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	665	Open in IMG/M
3300012212\|Ga0150985_106954950	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	657	Open in IMG/M
3300012212\|Ga0150985_109269616	Not Available	1046	Open in IMG/M
3300012212\|Ga0150985_113795624	Not Available	842	Open in IMG/M
3300012212\|Ga0150985_115042386	Not Available	1427	Open in IMG/M
3300012212\|Ga0150985_118170987	All Organisms → cellular organisms → Bacteria	1670	Open in IMG/M
3300012212\|Ga0150985_119252302	All Organisms → cellular organisms → Bacteria	1801	Open in IMG/M
3300012212\|Ga0150985_120201077	Not Available	663	Open in IMG/M
3300012212\|Ga0150985_121265466	Not Available	840	Open in IMG/M
3300012212\|Ga0150985_121382384	Not Available	796	Open in IMG/M
3300012212\|Ga0150985_122035505	Not Available	1269	Open in IMG/M
3300012212\|Ga0150985_122807136	All Organisms → cellular organisms → Bacteria	1496	Open in IMG/M
3300012469\|Ga0150984_103289006	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	824	Open in IMG/M
3300012469\|Ga0150984_108330715	Not Available	775	Open in IMG/M
3300012469\|Ga0150984_109139498	Not Available	538	Open in IMG/M
3300012469\|Ga0150984_113754303	Not Available	562	Open in IMG/M
3300012469\|Ga0150984_114291902	Not Available	633	Open in IMG/M
3300012469\|Ga0150984_114369433	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Anatilimnocola	852	Open in IMG/M
3300012469\|Ga0150984_114778253	Not Available	602	Open in IMG/M
3300012469\|Ga0150984_118010598	Not Available	1227	Open in IMG/M
3300014325\|Ga0163163_12798446	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300014968\|Ga0157379_11403637	Not Available	677	Open in IMG/M
3300015201\|Ga0173478_10192644	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Anatilimnocola	848	Open in IMG/M
3300015371\|Ga0132258_10074314	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	7894	Open in IMG/M
3300015371\|Ga0132258_11753956	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1565	Open in IMG/M
3300015371\|Ga0132258_11802999	All Organisms → cellular organisms → Bacteria	1542	Open in IMG/M
3300015374\|Ga0132255_101642747	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Anatilimnocola	974	Open in IMG/M
3300015374\|Ga0132255_106028809	Not Available	513	Open in IMG/M
3300018053\|Ga0184626_10226800	Not Available	787	Open in IMG/M
3300018056\|Ga0184623_10020417	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	2934	Open in IMG/M
3300018063\|Ga0184637_10138685	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	1500	Open in IMG/M
3300018075\|Ga0184632_10076525	Not Available	1459	Open in IMG/M
3300018078\|Ga0184612_10301784	Not Available	820	Open in IMG/M
3300018081\|Ga0184625_10000518	All Organisms → cellular organisms → Bacteria	14740	Open in IMG/M
3300018422\|Ga0190265_11356121	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	827	Open in IMG/M
3300018422\|Ga0190265_12535515	Not Available	611	Open in IMG/M
3300018422\|Ga0190265_13577999	Not Available	518	Open in IMG/M
3300018432\|Ga0190275_11750008	Not Available	700	Open in IMG/M
3300018432\|Ga0190275_12436719	Not Available	601	Open in IMG/M
3300018433\|Ga0066667_12064899	Not Available	526	Open in IMG/M
3300020020\|Ga0193738_1123272	All Organisms → cellular organisms → Bacteria	721	Open in IMG/M
3300020067\|Ga0180109_1063801	Not Available	670	Open in IMG/M
3300020195\|Ga0163150_10112052	Not Available	1680	Open in IMG/M
3300020213\|Ga0163152_10393868	Not Available	662	Open in IMG/M
3300021082\|Ga0210380_10070239	Not Available	1528	Open in IMG/M
(restricted) 3300021517\|Ga0224723_1199749	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	584	Open in IMG/M
3300024055\|Ga0247794_10095045	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Anatilimnocola	880	Open in IMG/M
3300025310\|Ga0209172_10117222	All Organisms → cellular organisms → Bacteria	1502	Open in IMG/M
3300025922\|Ga0207646_11926651	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Blastopirellula → Blastopirellula marina	503	Open in IMG/M
3300025961\|Ga0207712_10178610	Not Available	1665	Open in IMG/M
3300026023\|Ga0207677_11561027	Not Available	610	Open in IMG/M
3300026118\|Ga0207675_102151382	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	574	Open in IMG/M
3300027533\|Ga0208185_1078202	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	783	Open in IMG/M
3300027909\|Ga0209382_12125592	Not Available	534	Open in IMG/M
3300031455\|Ga0307505_10240725	Not Available	840	Open in IMG/M
3300031521\|Ga0311364_12439537	Not Available	510	Open in IMG/M
3300031716\|Ga0310813_10638301	Not Available	946	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	53.98%
Host-Associated	Host-Associated	45.13%
Engineered	Engineered	0.89%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	45.13%
Terrestrial	Environmental → Terrestrial	36.28%
Aquatic	Environmental → Aquatic	17.70%
Built Environment	Engineered → Built Environment	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	35.40%
Rhizoplane	Host-Associated → Plants → Rhizoplane	23.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere	20.35%
Sediment	Environmental → Aquatic → Sediment	11.50%
Freshwater	Environmental → Aquatic → Freshwater	4.42%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.77%
Peat	Environmental → Terrestrial → Peat	0.89%
Roots	Host-Associated → Plants → Roots	0.89%
Unclassified	Engineered → Built Environment → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	24.78%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	16.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.39%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	11.50%
Loam	Environmental → Terrestrial → Soil → Loam	10.62%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.96%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.08%
Lake	Environmental → Aquatic → Freshwater → Lake	2.65%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.77%
Sediment	Environmental → Aquatic → Thermal Springs → Sediment	1.77%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.89%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.89%
Unclassified	Engineered → Built Environment → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	16.81%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.16%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.39%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	11.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.96%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	7.08%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.08%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.19%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.54%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.54%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.77%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	1.77%
Unclassified	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified	1.77%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.89%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.89%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.89%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.89%
Unclassified	Engineered → Built Environment → Unclassified → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	12.39%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.96%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	7.08%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	6.19%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	6.19%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	6.19%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	5.31%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	5.31%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.42%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	3.54%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.65%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.77%
Freshwater Microbial Mat	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat	1.77%
Hot Spring Sediment	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment	1.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.77%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.77%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.77%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	0.89%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.89%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.89%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.89%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.89%
Drinking Water Pipes	Engineered → Built Environment → Unclassified → Unclassified → Unclassified → Drinking Water Pipes	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2162886006	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006865	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG	Environmental	Open in IMG/M
3300006872	Biofilm microbial communities from drinking water pipes in Singapore	Engineered	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009610	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700	Environmental	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300011417	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT500_2	Environmental	Open in IMG/M
3300011439	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT820_2	Environmental	Open in IMG/M
3300012041	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT754_2	Environmental	Open in IMG/M
3300012159	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT500_2	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300020020	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a1	Environmental	Open in IMG/M
3300020067	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLIBT47_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020195	Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.P2.IB	Environmental	Open in IMG/M
3300020213	Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.MP8.IB-2	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300021517 (restricted)	Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Balambano_FR2_MetaG	Environmental	Open in IMG/M
3300024055	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6	Environmental	Open in IMG/M
3300025310	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027533	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300031455	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 23_S	Environmental	Open in IMG/M
3300031521	III_Fen_E2 coassembly	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
SwRhRL3b_0377.00002280	2162886006	Switchgrass Rhizosphere	MHVVDGDLLIGGARLKHVHVELVEELPQPGSSDWILTGHLHLSPEQSEQITIDRPYRLQLYDGRAGQVVVCRIAGDGQPQDLLVDFHPPERQ
JGI10216J12902_1090512042	3300000956	Soil	MHEVDGDLLIGGARLKHVHIELEEELPQPGSADWILVGHLHLSPEQTEHIQTDRPYRLQLDDGRAGQVIVCRIAPNGQPHDLLVDFHPPERQ*
F14TB_1023151202	3300001431	Soil	MHVVDGDLLIGGARLRHVHIELVEELPQPGSSDWILTGHLHLSPEQSEQITIDRPYRLQLEDGRAGQVVVCRIAADGQPHDLLVDFQPPERQ*
Ga0062593_1004432342	3300004114	Soil	MHEAEGDLLIGGDRLKHLHVDLEAEQQQAGTTEWTLAGHLRVTTEQSQLLETDRPYRLQLADGRCGQVIVSRIAADGKPDELLADFLPKQCR*
Ga0062593_1015160342	3300004114	Soil	MQALDGDLLVGGARIRHIHVELEAEQPQPGSGEWVLSGHLHLTEEQSQLLETDRPYRLQLADGRCGQVIVSRIAADG
Ga0062593_1022615311	3300004114	Soil	MHEAEGDLLIGGDRIKRVHVDLEAEQQQVGSAEWTLAGHLHLTAEQSRLLETDRPYRLQLNDGRCGQVIVSRIAVDVDCKELLADFLPKRVS*
Ga0062589_1001547892	3300004156	Soil	MHEAEGDLLIGGDRLKHLHVDLEAEQQQAGTTEWTLAGHLHVTTEQSQLLETDRPYRLQLADGRCGQVIVSRIAADGKPDELLADFLPKQCR*
Ga0062590_1007005601	3300004157	Soil	MQALDGDLLVGGARIRHIHVELEAEQPQPGSGEWVLSGHLHLTEEQSQLLETDRPYRLQLADGRCGQVIVSRIAADGKPNELLADFLPKRAKSS*
Ga0062590_1021092141	3300004157	Soil	MRDAQGDLLIGGDRIKRLHIDLEAEQKQDGSAEWTLAGHLHLTAEQSQLLETDRPYRLQLADGRCGQVVVSRIAADADRKELLADFLP
Ga0063356_10000300414	3300004463	Arabidopsis Thaliana Rhizosphere	MHEVDGDLLIGGARLKHVHVELEEELQEPGSSDWILTGHLHLSHEQTEQLQTDRPYRLQLKDGRAGQVVVSRIAADGQPNDRLVDFHSPDRQ*
Ga0063356_1006486381	3300004463	Arabidopsis Thaliana Rhizosphere	MQALDGDLLIGGERLRHLPVELEAEIPQPGSKDWILAGHLRLTSEQRCLLTIDRPYRLQLSDGRAGQVVFCKIALDGQPDDCLADFHAPERQ*
Ga0063356_1017280512	3300004463	Arabidopsis Thaliana Rhizosphere	MHESHGDLLIGGQRIKHVHCELEQEQPLTDSKEWILAGHLHVTSEQSQLLETDRPYRLQLEDGRAGQVVVSKIACDGKPDESVVIFQPKRAAH*
Ga0063356_1028705122	3300004463	Arabidopsis Thaliana Rhizosphere	VQEFYGDLLIGGMRLAQVRGELEEEQPQPNSREWFLAGCLHLTPDQMELLEVDRPYRLQLDDGRAGQVVVSRIARPREDELLVAFQPKRSAAAPPLPR*
Ga0063356_1046336962	3300004463	Arabidopsis Thaliana Rhizosphere	MHAAEGELLVGGARIRHVHVDLEEEQPQPGTAEWALAGHLHLTQEQSHLVETDRPYRLQLADGRCGQVIVSRIAADGRPNELLADFLPKRSL
Ga0063356_1047377721	3300004463	Arabidopsis Thaliana Rhizosphere	MHEFQGDLLIGGERLKCVHGELEEEVPQPGCKEWILAGHLHLSPEQSQHLETDRPYRLQLDDGRAGQVFVSRIAADGKPNELLIDFLPKK*
Ga0062595_1024089511	3300004479	Soil	AEGDLLIGGDRLKHLHIDLEAEQQLDGSAEWTLAGHLHVTAEQSQLLETDRPYRLQLADGRSGQVIVSRIAANGDPKELLADFLPKRAADSLR*
Ga0065705_101042672	3300005294	Switchgrass Rhizosphere	MHVVDGDLLIGGARLKHVHVELVEELPQPGSSDWILTGHLHLSPEQSEQITIDRPYRLQLYDGRAGQVVVCRIAGDGQPQDLLVDFHPPERQ*
Ga0065705_103595192	3300005294	Switchgrass Rhizosphere	MHESHGDLLIGGQRIKHVHCELEQEQPLTDSKEWILAGHLHVTSEQSQLLETDRPYRLQLEDGRAGQVVISSIAQDGKPDESVVIFQPKRAAR*
Ga0065707_101618181	3300005295	Switchgrass Rhizosphere	LLIGGQRIKHVHCELEQEQPLTDSKEWILAGHLHVTSEQSQLLETDRPYRLQLEDGRAGQVVISSIAQDGKPDESVVIFQPKRAAR*
Ga0066388_1002509222	3300005332	Tropical Forest Soil	MQAAEGDLLIGGDRIKRVQVELEEGQPQPGSREWVLVGHLHLTAEQSRLVETDRAYRLQLADGRCGQVVVSRIATDGKPDELLADFQPKRAAAS*
Ga0066388_1005850902	3300005332	Tropical Forest Soil	RIRHLHGELQDQQPQAGSAEWFLAGQLHLTAEQSQFLETDRPYRLQLADGRSGQVVVRRIAANANPNELLAEFLPKR*
Ga0066388_1061518871	3300005332	Tropical Forest Soil	MSELNGELLIGGDRIRHIHVELEAEQPQPGSAEWVLSGHLHLTQEQSQLLETDRPYRLQLADGRCGQVVVSRIAADGKPNELLADFLPKCK*
Ga0066388_1075555411	3300005332	Tropical Forest Soil	ARIRHVHVELEEEQPQAGSAEWSLAGHLHLSAEQSQLLETDRSYRLQLADGRAGQVFFCRIAADGKADELLADFLLKQINERSGAGVSSRENA*
Ga0070682_1012379822	3300005337	Corn Rhizosphere	LLIGGERIKHIHGELDEELPHPGSREWVLAGHLHISVEQSQLLETDRPYRLQLADGRCGQVIVSRIAADGKPNELLADFLPRQCSK*
Ga0070668_1018952112	3300005347	Switchgrass Rhizosphere	MHEAEGDLLIGGERIKHLHIDLEDEQRVGNSTEWTLAGHLHVTAEQSQLLETDRPYRLQLADGRSGQVIVSRIAADGKPN
Ga0070710_100247485	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MHASEGDLLIGGDRIRRVHIDLEEERLQDGSGEWVLTGHLHLTAEQCRLVETDRPYRLMLADGRAGQVIVSRIAADGKPDDLLADFRPKLLK*
Ga0070699_1016465532	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MHAFEGDLLVGGARIRQIHGELADEQPQSGSSEWVLAGHLHLTPEQSQQVETDRPYRLQLADGRCGQVIVSRIAA
Ga0066905_1020033161	3300005713	Tropical Forest Soil	ASEGDLLVGGARIRHVHVELDDEQPLTGSGEWVLAGHLHLTTEQSQLLETDRPYRLQLADGRAGQVIVSRIAADGKPNELLADFLPKRASK*
Ga0066903_1012519493	3300005764	Tropical Forest Soil	MSESNGDLLIGGDRIKHLHVELEDEQPQAGSCEWVLAGHLHLTREQSQLLETDRPYRLLLADGRAGQVIVSRIAADGKPDELLADFLPKCKK*
Ga0066903_1059744941	3300005764	Tropical Forest Soil	MHEAEGDLLIGGDRIKRLHVDLEAEHQNGSADWIFAGHLHLTAEQSRLLETDRPYRLQLVDGRCGQVIVSRI
Ga0066653_101900472	3300006791	Soil	MHAFEGDLLVGGARIRHIHGELDDEQQQAGSAEWVLAGHLHLTSEQSQLVETDRPYRLQLADGRCGQVIVSRIAADGKPN
Ga0075428_1017681221	3300006844	Populus Rhizosphere	HVHIELEEELPQPGSSDWILAGHLHLSPEQTEHIQTDRPYRLQLDDGRAGQVVVCRIAPDGQPHDLLVDFHPPERQ*
Ga0075428_1022846781	3300006844	Populus Rhizosphere	MHEVDGDLLIGGARIKHVHIELEEELPQPGSSDWILVGHLHLSPELTEQLQTDRPYRLQLDDGRAGQVVVSRIAADGQPNEKLVDFHPPERQ*
Ga0075425_1008464252	3300006854	Populus Rhizosphere	MQALDGDLLVGGARIRHIHVELEAEQPQPGSAEWVLSGHLHLTEEQCQLLETDRPYRLQLADGRCGQVIVSRIAADGKPNELLADFLPKRK*
Ga0073934_101677092	3300006865	Hot Spring Sediment	MRDFHGDLLIGGARLKHVHVQLEEGQPAADSREWALAGHLHLTEEQSRFVETDRPYRLQLEDGRAGQVIVCRIQADGKPDELLADFLPRQASRNR*
Ga0101947_10554712	3300006872	Drinking Water Pipes	MHESHGDLLIGGQRIKHVHCELEQEQPLTDSKEWILAGHLHVTSEQSQLLETDRPYRLQLEDGRAGQVVISSIACDGKPDESVVIFQPKKARA*
Ga0111539_121006162	3300009094	Populus Rhizosphere	MHESHGDLLIGGERIKHVHCELEQEQQLSDSKEWILAGHLHISNEQSQLLETDRPYRLQLADGRCGQVIVSRIAADGKPNELLADFLPKRA
Ga0111539_135187802	3300009094	Populus Rhizosphere	MFGGSQHVASQEVRAMHESHGDLLIGGQRIKHVHCELEQEQPLTDSKEWILAGHLHVTSEQSQLLETDRPYRLQLEDGRAGQVIISRIACDGKP
Ga0105245_109909533	3300009098	Miscanthus Rhizosphere	MHEFEGDLLIGGERIKHIHGELDEELPQPGSREWVLAGHLHISVEQSQLLETDRPYRLQLADGRCGQVIVSRIAADGKPNELLADFLPRQCSK*
Ga0105245_132788531	3300009098	Miscanthus Rhizosphere	LLKYSSVEAAMHEAEGDLLIGGDRIKRLHIDLEAEQKQDGSAEWTLTGHLHLTEEQSQLLETDRPYRLQLADGRCGQVVVSRIAANADRRELLADFLPKRKP*
Ga0075418_102124285	3300009100	Populus Rhizosphere	MHESHGDLLIGGERIKHVHCELEEEQPLTDSKEWILAGHLHLTAEQSQLLETDRPYRLQLEDGRAGQVVVSSISCDGKPDESVVIFQPKKTPEKTR*
Ga0075418_116718411	3300009100	Populus Rhizosphere	MHEVDGDLLIGGARLKHVHIELEEELPQPGSSDWILAGHLHLSPELTDQLQTDRPYRLQLDDGRAGQVVVSRIAADGQPDEKLVDFHPPERQ*
Ga0066709_1015335482	3300009137	Grasslands Soil	MPAFEGDLLVGGARIRRIHVELEAEQPQPDSREWVLAGHLHLTREQSQLLETDRPYRLHLADGRCGQVIVSRIAADGKPDELLADFQPRR*
Ga0111538_113674082	3300009156	Populus Rhizosphere	MHESHGDLLIGGQRIKHVHCELEQEQPLSDSKEWILAGHLHVTSEQSQLLETDRPYRLQLEDGRAGQVVISRIACDGKPDESVVIFQPKKAAQPK*
Ga0111538_119798071	3300009156	Populus Rhizosphere	MHEFQGDLLIGGERLKHVHGELEEEVPQQGCKEWILAGHLHLSPEQSHLLETDRPYRLQLDDGRAGQVIVSRIAADGKPDALLVD
Ga0105340_10804773	3300009610	Soil	MHEFQGDLLIGGERLKHVHGELEEEVPQPDCKEWHLAGHLHLSPDQSQLLETDRPYRLQLDDGRAGQVIVSRIAPDGKPNELLVDFLPKR*
Ga0105340_13849041	3300009610	Soil	PEAENLRRGGVMHEVDGDLLVGGERLRHVHVELEAEIPQPGSKDWILAGQLHLTPQQRELLETDRPYRLQLDDGRAGQVVFCRIAADGKPDDLLADFRAPERQ*
Ga0126307_108111322	3300009789	Serpentine Soil	MHESHGDLLIGGQRIKHIHCELEEEQPLTDSKEWILAGHLHLTIEQTQCLETDRPYRLQLEDGRAGQVIVSRIAADGKPDESVVDFYPKRSTK*
Ga0126377_116003241	3300010362	Tropical Forest Soil	MSELNGELLIGGDRIRHIHVELEAEQPQPGSAEWVLSGHLHLTQEQSQLLETDRPYRLQLADGRCGQVVVSRIAADGKPNELLADFLPKQIKERSAAGVS
Ga0137326_11698331	3300011417	Soil	AMHAFEGDLLVGGARIRQIHGELEDEQPQSGSSEWVLAGHLHLTPEQSQQVETDRPYRLQLADGRCGQVIVSRIAADGDRNHLLADFLPKRCTDKLP*
Ga0137432_10135142	3300011439	Soil	MHAAEGELLVGGARIRHVHVDLEEEQPQAGSAEWALSGHLHLTPEQSHLVETDRPYRLQLADGRCGQVIVSRIAADGKPNELLADFLPRRRSNCES*
Ga0137430_10607961	3300012041	Soil	MHAAEGELLVGGARIRHVHVDLEEEQPQAGSAEWALSGHLHLTPEQSHLVETDRPYRLQLADGRCGQVIVSRIAADGKPNELLADFLPRRRSNCES
Ga0137344_10049402	3300012159	Soil	MHEFQGDLLIGGERLKHVHGELEEEVPQPDCKEWHLAGHLHLSPDQSQLLETDRPYRLQLDDGRAGQVIVSRI
Ga0137379_115040151	3300012209	Vadose Zone Soil	MHAFEGDLLVGGARIRQIQGELDDEQPQAGSAEWVLAGHLHLTTEQSRLVETDRPYRLQLADGRCGQVIVSRIAADGQPNQLLADFLPKRCAAKTP*
Ga0150985_1051924722	3300012212	Avena Fatua Rhizosphere	VAEAAMHEAEGDLLIGGERIKHLHIDLEDERRVADSTEWTLSGHLHVTAEQSQLLETDRPYRLQLADGRCGQVVVSRIAADGKPNELLADFLPKQRK*
Ga0150985_1055618612	3300012212	Avena Fatua Rhizosphere	LRIKRVNVDLEAEQQQDGSAEWTLAGHLHLTAEQSRLLETDRPYRLQLTDGRCGQVIVSRISAPGDRKELLADFLPKRAS*
Ga0150985_1060822452	3300012212	Avena Fatua Rhizosphere	MHASEGDLLIGGDRIRRVHIDLEEERRQDGSGEWVLTGHLHLTAEQCRHVETDRPYRLQLADGRAGQVIVSRIAADGKPDDLLADFRP
Ga0150985_1069549502	3300012212	Avena Fatua Rhizosphere	MHASEGDLLIGGDRIRRVHIDLEEERRQDGSGEWVLTGHLHLTAEQCRLVETDRPYRLQLADGRAGQVIVSRIAADGKPDDLLADFRPTPSN*
Ga0150985_1092696162	3300012212	Avena Fatua Rhizosphere	MHEAEGDLLIGGERIKHLHVDLEDERRLADSTEWTLAGHLHVTAEQSQLLETDRPYRLQLADGRCGQVIVSRIAPDGKPNELLADFLPKQAR*
Ga0150985_1137956241	3300012212	Avena Fatua Rhizosphere	LLKYSSVEAAMHEAEGDLLIGGDRIKRLHIDLEAEQKQDGSAEWTLTGHLHLTEEQSQLLETDRPYRLQLADGRCGQVVVSRIAANPDRRELLAVFLPKRKPYNRSNRR*
Ga0150985_1150423862	3300012212	Avena Fatua Rhizosphere	MHEAEGDLLIGGERIKHLHIDLEDERRVADSSEWTLAGHLHLTAEQSHLLETERPYRLQLADGRCGQVVVSRIAPDGKPNELLADFHPKQCR*
Ga0150985_1181709872	3300012212	Avena Fatua Rhizosphere	MHEAEGDLLIGGDRIKRLHIDLEAEQQQACSAEWTLAGHLHLTAEQSEQLETDRPYRLQLADGRCGQVIVSRIAADADHKELLADFLPKGER*
Ga0150985_1192523022	3300012212	Avena Fatua Rhizosphere	MHASEGDLLIGGDRIRRVHIDLEEERRQDGSGEWVLTGHLHLTAEQCRHVETDRPYRLQLADGRAGQVIVSRIAADGKPDDLLADFRPKPAN*
Ga0150985_1202010771	3300012212	Avena Fatua Rhizosphere	MHAAEGALLIGGHRIQRLHIDLEAEQQQAGSAEWTLAGHLHLTPEQSQLLETDRPYRLHLSDGRCGQVIVSRIAANTDRQELLADFLPKQSRNS*
Ga0150985_1212654662	3300012212	Avena Fatua Rhizosphere	MHEAEGDLLIGGDRIKRLQIDLEAEQKQDGSAEWTLTGHLHVTAEQSQLLETDRPYRLQLADGRCGQVVVSRIAADSDRREVLADFLPKDRH*
Ga0150985_1213823841	3300012212	Avena Fatua Rhizosphere	MHEAEGDLLIGGDRIKRLHIDLEAEQRQDGSAEWTLAGHLHLTPEQSQLLETDRPYRLQLADGRCGQVIVRRITADDDRKELLADFLPK*
Ga0150985_1220355052	3300012212	Avena Fatua Rhizosphere	MQALHGELLVGGARIRHIHVDLEAEQPQPGSREWVLTGHLHLTTEQSQLLETDRPYRLQLADGRCGQVIVSRIAADGKPDELLADFQPRPK*
Ga0150985_1228071362	3300012212	Avena Fatua Rhizosphere	MDHRGGGGVIHASEGDLLIGGDRIKHVRLDLEDEQPQADSREWVFAGHLHLTSEQSRLVETDRPYRLQLADGRAGQVILSRIAADGQPDDLLADFRPKPAMERSH*
Ga0150984_1032890062	3300012469	Avena Fatua Rhizosphere	VAVEAAMHEAEGDLLIGGDRIKRLHIDLEAEQKQDGSAEWTLTGHLHLTEEQSQLLETDRPYRLQLADGRCGQVVVSRIAANADRRELLAD
Ga0150984_1083307152	3300012469	Avena Fatua Rhizosphere	MEAAMQAFEGDLLVGGARIRRLHVELEAEQAQPGSAEWVLSGHLHLTEEQSQLLETDRPYRLQLADGRSGQVIVSRIAADGKPNELLADFLPKRE*
Ga0150984_1091394982	3300012469	Avena Fatua Rhizosphere	MHAFEGDLLVGGARIRHVHVELDDEQPQAGTAEWVLAGHLHLTAEQSQHLETDRPYRLQLADGRCGQVVVSRIAADGKPDELLADFQPKHK*
Ga0150984_1137543032	3300012469	Avena Fatua Rhizosphere	MHASKGELLIGGDRIKHVHIDLEHEQPQDGSREWGFAGHLHLTAEQSRLVETDRPYRLQLADGRAGQVIVSRIAADGKPDDLLADFRPKPVR*
Ga0150984_1142919021	3300012469	Avena Fatua Rhizosphere	MQALDGELLVGGARIRHIHVDLKAEQPQPGSREWVLTGHLHLTTEQSQLVETHRPYRLQLADGRCGQVIVSRIAADGKPDELLADFEPRRK*
Ga0150984_1143694331	3300012469	Avena Fatua Rhizosphere	EAEGDLLIGGDRIKRLHIDLEAEQQQAGSAEWTLAGHLHLTAEQSEQLETDRPYRLQLADGRCGQVIVSRIAADADHKELLADFLPKGER*
Ga0150984_1147782532	3300012469	Avena Fatua Rhizosphere	EAEGDLLIGGERIKHLHIDLEDERRVADSSEWTLAGHLHLTAEQSHLLETERPYRLQLADGRCGQVVVSRIAPDGKPNELLADFHPKQCR*
Ga0150984_1180105982	3300012469	Avena Fatua Rhizosphere	VEAAMHEAEGDLLIGGERIKHLHVDLEDERRLADSTEWTLAGHLHVTAEQSQLLETDRPYRLQLADGRCGQVIVSRIAPDGKPNELLADFLPKQAR*
Ga0163163_127984462	3300014325	Switchgrass Rhizosphere	LIGGQRIKHVHCELEEEQPLTDSKEWNLAGHLHLTSEQSKLLETDRPYRLQLEDGRAGQVVVSQIAEDDNPDDSVVAFLPKKAAK*
Ga0157379_114036372	3300014968	Switchgrass Rhizosphere	MTECDGDLLIGGDRIKHVHLDLEDERPQNGSGEWALAGHLHLSVEQSQLLETDRPYRLQLADGRCGQVIVSRIAADGQPNALLADFQPKPAVERSR*
Ga0173478_101926441	3300015201	Soil	EAEGDLLIGGDRLKHLHVDLEAEQQQAGTTEWTLAGHLHVTTEQSQLLETDRPYRLQLADGRCGQVIVSRIAADGKPDELLADFLPKQCR*
Ga0132258_100743147	3300015371	Arabidopsis Rhizosphere	MHEAEGDLLIGGDRIKHLHIDLESEQKLDGSAEWTLAGHLHVTAEQSLLLETDRPYRLQLADGRCGQVIVSRIAADGDRRELLADFMPKRRA*
Ga0132258_117539563	3300015371	Arabidopsis Rhizosphere	RIRRVHIDLEDERPQDGSGEWVLKGHLHLTAEQSRLVETDRPYRLQLTDGRAGQVIVSRISADGKPDDLLAAFQPK*
Ga0132258_118029992	3300015371	Arabidopsis Rhizosphere	MAEAAMQAFEGDLLVGGARIRHIHGELQDQQPQTGSAEWVLSGQLHLTIEQSQLLETDRQYRLQLADGRSGQVVVSRIAANSNRNELLAEFLPRRRGEASR*
Ga0132255_1016427471	3300015374	Arabidopsis Rhizosphere	TAMHEAEGDLLIGGDRIKHLHIDLESEQKLDGSAEWTLAGHLHVTAEQSLLLETDRPYRLQLADGRCGQVIVSRIAADGDRRELLADFMPKRRA*
Ga0132255_1060288092	3300015374	Arabidopsis Rhizosphere	MHAAEGELLVGGARIRHVHVDLEEEQPQAGSAEWALAGHLHLSADQSHLLETDRPYRLQLADGRCGQVIVSRIAANANPNELLADFLPKRR*
Ga0184626_102268002	3300018053	Groundwater Sediment	MHEVDGDLLIGGARIKHVHIELEEELPQPGSSDWILAGHLHLSHEQTDQLQTDRPYRLQLDDGRAGQVIVSRIAADGQPDEKLVDFHPPERQ
Ga0184623_100204172	3300018056	Groundwater Sediment	MHAVDGDLLIGGARIKHVHIELEEELPQPGSSDWILAGHLHLSPEQTDQLQTDRPYRLQLDDGRSGQVVVSRIAADGQPDEKLVDFHPPERQ
Ga0184637_101386851	3300018063	Groundwater Sediment	MHELDGDLLIGGARLKRVHIELEEELPQPGSSDWILAGHLHLSPEQSELIQTDRPYRLQLADGRAGQVVVCRTSPDGQPHELLADFHPPERQ
Ga0184632_100765252	3300018075	Groundwater Sediment	MHEVDGDLLIGGARIKHLHIELEEELPQPGSSDWILAGHLHLSPEQTEHIQTDRPYRLQLDDGRAGQVVVCRIAADGQPDETLVGFHPPERQ
Ga0184612_103017842	3300018078	Groundwater Sediment	MHEFQGDLLIGGERLKHVHGELEEEVPQPDCKEWRLAGHLHLSPDQSQLLETDRPYRLQLDDGRAGQVIVSRIAPDGKPNELLVDFLPKKDVEKQR
Ga0184625_1000051815	3300018081	Groundwater Sediment	MHESHGDLLIGGQRIKHVHCELEQEQPLSDSKEWILAGNLHVTNEQSQLLETDRPYRLQLEDGRAGQVVISRIACDGKPDESVVIFQPKKAATPK
Ga0190265_113561212	3300018422	Soil	MHAVDGDLLIGGDRLRHVHIDLEAEMPQPGSKDWILAGHIHLTPAQGELVQTDRPYRLQLDDGRAGQVVVCKIAVDGQPDDLLADFHAPDRQ
Ga0190265_125355151	3300018422	Soil	MQAEGDLLIGGDRIKHVHIDLEDEQPAAGSREWVLAGHLHLTPEQSKLVETDRPYRLQLADGRAGQVVVSRIAPDGQPNDVLADFEPRKCGDKPR
Ga0190265_135779991	3300018422	Soil	VQEFYGDLLIGGLRLAQVRGELEEEQPQPNSREWLLAGCLHLAPDQMELLEIDRPYRLQLDDGRAGQVVVSRIARPRDDELLVAFQPRRTSVAPPL
Ga0190275_117500082	3300018432	Soil	MHSVDGDLLIGGERLKRVHVELEEESPQPGSREWILAGHLHLSVAQSQQLEIDRAYRLLLDDGRAGQVVLYRISPDGKPEEVQADFQPKGSQP
Ga0190275_124367191	3300018432	Soil	MHEFQGDLLIGGERLKCVHGELDEEQPLSDSKEWILAGHLHLTAEQSQLLETDRPYRLQLEDGRAGQVIVSRIGPDGKPDEQLVDFQPRKAATKAK
Ga0066667_120648992	3300018433	Grasslands Soil	MHASEGDLLIGGDRIKRVRLDLEDEQPQAGPGEWVLTGHLHLTPEQSRLVETDRPYRLQLADGRAGQVIVSRIAADGKPDDLLADFRPKPAK
Ga0193738_11232722	3300020020	Soil	MHEVDGDLLIGGARIKHLHIELEEELPQPGSSDWILAGHLRLSPEQTEHIQTDRPYRLQLDDGRAGQVVVCRIAPDGQPHDLLVDFHPPERQ
Ga0180109_10638012	3300020067	Groundwater Sediment	MHEFQGDLLIGGERLKHVHGELEEEVPQPDCKEWRLAGHMHLSPDQSQLLETDRPYRLQLDDGRAGQVIVSRIAPDGKPNELLVDFLPKRDGKAP
Ga0163150_101120524	3300020195	Freshwater Microbial Mat	MHEAEGDLLIGGERLKHLHIDLEDEQRVADSSEWTLAGHLHLTAEQSQLLETDRPYRLQLNDGRCGQVVVSRIAADADRKELLADFLPKRGQ
Ga0163152_103938682	3300020213	Freshwater Microbial Mat	MHEVEGDLLIGGERLKHVHIELEEELPQPGSREWILAGHIHLTAEQSQHLETDRPYRLLLDDGRAGQVVLYRIGPDGTPEEVQADFQPKAARH
Ga0210380_100702392	3300021082	Groundwater Sediment	MHESHGDLLIGGQRIKHVHCELEQEQPLSDSKEWILAGNLHVTNEQSQLLETDRPYRLQLEDGRAGQVVISRIACDG
(restricted) Ga0224723_11997492	3300021517	Freshwater Sediment	MHEVDGDLLIGGERLRHVHIELEAEIPQPGSKDWILAGHLHLTPEQGQQVQTDRPYRLQLDDGRAGQVVVCKIAPDGQPDDLLADFHAPDRQ
Ga0247794_100950452	3300024055	Soil	MHEAEGDLLIGGDRIKRVHVDLEAEQQQVGSAEWTLAGHLHLTAEQSRLLETDRPYRLQLNDGRCGQVIVSRIAVDVDCKELLADFLPKRVS
Ga0209172_101172222	3300025310	Hot Spring Sediment	MRDFHGDLLIGGARLKHVHVQLEEGQPAADSREWALAGHLHLTEEQSRFVETDRPYRLQLEDGRAGQVIVCRIQADGKPDELLADFLPRQASRNR
Ga0207646_119266511	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	GGDRIKHVHLDLEDERPQNGSGEWALAGHLHLSVEQSQLLETDRPYRLQLADGRCGQVIVSRIAADGQPNALLADFQPKPAVERSR
Ga0207712_101786102	3300025961	Switchgrass Rhizosphere	MHEFEGDLLIGGERIKHIHGELDEELPQPGSREWVLAGHLHISVEQSQLLETDRPYRLQLADGRCGQVIVSRIAADGKPNELLADFLPRQCSK
Ga0207677_115610271	3300026023	Miscanthus Rhizosphere	MHEAEGDLLIGGDRIKRLHIDLEAEQKQDGSAEWTLTGHLHLTEEQSQLLETDRPYRLQLADGRCGQVVVSRIAANADRRELLADFLPKRKP
Ga0207675_1021513821	3300026118	Switchgrass Rhizosphere	RIRHIHVELEAEQPQPGSGEWVLSGHLHLTEEQSQLLETDRPYRLQLADGRCGQVIVSRIAADGKPNELLADFLPKRAKSS
Ga0208185_10782021	3300027533	Soil	MHEFQGDLLIGGERLKHVHGELEEEVPQPDCKEWHLAGHLHLSPDQSQLLETDRPYRLQLDDGRAGQVIVSRIAPDGKPNELLVDFLPKR
Ga0209382_121255921	3300027909	Populus Rhizosphere	MHEVDGDLLIGGARLKHVHIELEEELPQPGSSDWILAGHLHLSPELTDQLQTDRPYRLQLDDGRAGQVVVSRIAADGQPDEKLVDFHPPERQ
Ga0307505_102407252	3300031455	Soil	MHEIEGDLLIGGERLKHVHVELEEEAPQPDSREWILAGHIHLSVEQSQQLETDRPYRLLLDDGRAGQVVLYRISPDGKPEEVQADFQPKPAKL
Ga0311364_124395371	3300031521	Fen	MQEFHGDLLVGGARLKHVPCELEAETQEPHTHDWSLAGHLHLTPEEAEFLETDRPYRLQLDDGRAGQVVVSRIAPDGKPNDLLVDFGPPKPR
Ga0310813_106383011	3300031716	Soil	MHEAEGDLLIGGDRIKRVHVDLEAEQRQDGSAEWTLAGHLHLTAEQSRLVETDRQYRLQLTDGRCGQVIVSRIASDGEHKELLAAFLPK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters