Metagenome / Metatranscriptome Family F083356

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F083356
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	70 residues
Representative Sequence	MKNNLRMLGLGLCMLPMYLHAGTGQDLKQEYQPAQEQNTRSAEPIPAGTILPVSLNTALRSDKSGSGT
Number of Associated Samples	86
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	94.69 %
% of genes from short scaffolds (< 2000 bps)	78.76 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.21

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (72.566 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa (20.354 % of family members)
Environment Ontology (ENVO)	Unclassified (30.973 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (46.903 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 32.29% β-sheet: 0.00% Coil/Unstructured: 67.71%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.21
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.21
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF04542	Sigma70_r2	25.66
PF08281	Sigma70_r4_2	18.58
PF13490	zf-HC2	8.85
PF00486	Trans_reg_C	5.31
PF03466	LysR_substrate	1.77
PF14522	Cytochrome_C7	0.88
PF00072	Response_reg	0.88
PF00912	Transgly	0.88
PF09990	DUF2231	0.88
PF13751	DDE_Tnp_1_6	0.88
PF07681	DoxX	0.88
PF01590	GAF	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	25.66
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	25.66
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	25.66
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	25.66
COG0744	Penicillin-binding protein 1B/1F, peptidoglycan transglycosylase/transpeptidase	Cell wall/membrane/envelope biogenesis [M]	0.88
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	0.88
COG4270	Uncharacterized membrane protein	Function unknown [S]	0.88
COG4953	Membrane carboxypeptidase/penicillin-binding protein PbpC	Cell wall/membrane/envelope biogenesis [M]	0.88
COG5009	Membrane carboxypeptidase/penicillin-binding protein	Cell wall/membrane/envelope biogenesis [M]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	72.57 %
Unclassified	root	N/A	27.43 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	72.57 %
Unclassified	root	N/A	27.43 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	72.57 %
Unclassified	root	N/A	27.43 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	67.26 %
Unclassified	root	N/A	27.43 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.43 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	16.81 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	4.42 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.43 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	16.81 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.42 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.43 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	16.81 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.42 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.43 %
Silvibacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium	9.73 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.42 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.43 %
Silvibacterium bohemicum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	8.85 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.42 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001175\|JGI12649J13570_1003761	Not Available	2128	Open in IMG/M
3300001593\|JGI12635J15846_10016443	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6133	Open in IMG/M
3300001593\|JGI12635J15846_10268599	All Organisms → cellular organisms → Bacteria	1084	Open in IMG/M
3300001593\|JGI12635J15846_10413326	Not Available	811	Open in IMG/M
3300002245\|JGIcombinedJ26739_100111651	All Organisms → cellular organisms → Bacteria	2568	Open in IMG/M
3300002245\|JGIcombinedJ26739_100132917	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2349	Open in IMG/M
3300002245\|JGIcombinedJ26739_100216435	All Organisms → cellular organisms → Bacteria	1809	Open in IMG/M
3300002245\|JGIcombinedJ26739_101774146	Not Available	517	Open in IMG/M
3300004082\|Ga0062384_100503532	All Organisms → cellular organisms → Bacteria → Acidobacteria	803	Open in IMG/M
3300005602\|Ga0070762_10021918	All Organisms → cellular organisms → Bacteria	3341	Open in IMG/M
3300005602\|Ga0070762_10144479	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1419	Open in IMG/M
3300005921\|Ga0070766_10061773	All Organisms → cellular organisms → Bacteria → Acidobacteria	2134	Open in IMG/M
3300009547\|Ga0116136_1160294	All Organisms → cellular organisms → Bacteria → Acidobacteria	568	Open in IMG/M
3300009552\|Ga0116138_1086588	All Organisms → cellular organisms → Bacteria → Acidobacteria	873	Open in IMG/M
3300009640\|Ga0116126_1020821	All Organisms → cellular organisms → Bacteria → Acidobacteria	2889	Open in IMG/M
3300009641\|Ga0116120_1294677	Not Available	503	Open in IMG/M
3300009644\|Ga0116121_1257868	Not Available	558	Open in IMG/M
3300009665\|Ga0116135_1265117	All Organisms → cellular organisms → Bacteria → Acidobacteria	671	Open in IMG/M
3300009759\|Ga0116101_1015093	All Organisms → cellular organisms → Bacteria → Acidobacteria	1462	Open in IMG/M
3300009764\|Ga0116134_1050851	All Organisms → cellular organisms → Bacteria → Acidobacteria	1584	Open in IMG/M
3300010343\|Ga0074044_10387913	All Organisms → cellular organisms → Bacteria → Acidobacteria	915	Open in IMG/M
3300014155\|Ga0181524_10346021	All Organisms → cellular organisms → Bacteria → Acidobacteria	663	Open in IMG/M
3300014158\|Ga0181521_10234703	All Organisms → cellular organisms → Bacteria → Acidobacteria	978	Open in IMG/M
3300014159\|Ga0181530_10139379	All Organisms → cellular organisms → Bacteria → Acidobacteria	1396	Open in IMG/M
3300014162\|Ga0181538_10288014	All Organisms → cellular organisms → Bacteria → Acidobacteria	896	Open in IMG/M
3300014201\|Ga0181537_10287725	Not Available	1129	Open in IMG/M
3300014495\|Ga0182015_10292607	All Organisms → cellular organisms → Bacteria	1067	Open in IMG/M
3300014501\|Ga0182024_10582606	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium	1404	Open in IMG/M
3300014501\|Ga0182024_10939570	All Organisms → cellular organisms → Bacteria → Acidobacteria	1038	Open in IMG/M
3300014654\|Ga0181525_10041767	All Organisms → cellular organisms → Bacteria → Acidobacteria	2659	Open in IMG/M
3300014654\|Ga0181525_10820457	Not Available	525	Open in IMG/M
3300014657\|Ga0181522_10157644	All Organisms → cellular organisms → Bacteria → Acidobacteria	1328	Open in IMG/M
3300014657\|Ga0181522_10394876	All Organisms → cellular organisms → Bacteria → Acidobacteria	827	Open in IMG/M
3300017935\|Ga0187848_10383387	All Organisms → cellular organisms → Bacteria → Acidobacteria	580	Open in IMG/M
3300017940\|Ga0187853_10145873	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1136	Open in IMG/M
3300017988\|Ga0181520_10166302	All Organisms → cellular organisms → Bacteria → Acidobacteria	1773	Open in IMG/M
3300018009\|Ga0187884_10047939	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2012	Open in IMG/M
3300018017\|Ga0187872_10034670	All Organisms → cellular organisms → Bacteria	2794	Open in IMG/M
3300018019\|Ga0187874_10146682	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1000	Open in IMG/M
3300018021\|Ga0187882_1136421	Not Available	1009	Open in IMG/M
3300018022\|Ga0187864_10427326	All Organisms → cellular organisms → Bacteria → Acidobacteria	566	Open in IMG/M
3300018034\|Ga0187863_10409292	Not Available	756	Open in IMG/M
3300018034\|Ga0187863_10506041	Not Available	676	Open in IMG/M
3300018038\|Ga0187855_10074452	All Organisms → cellular organisms → Bacteria → Acidobacteria	2074	Open in IMG/M
3300018038\|Ga0187855_10092822	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	1829	Open in IMG/M
3300018043\|Ga0187887_10630656	Not Available	633	Open in IMG/M
3300018047\|Ga0187859_10900140	Not Available	510	Open in IMG/M
3300020580\|Ga0210403_10114130	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2195	Open in IMG/M
3300020580\|Ga0210403_10964417	All Organisms → cellular organisms → Bacteria → Acidobacteria	669	Open in IMG/M
3300020582\|Ga0210395_10396574	All Organisms → cellular organisms → Bacteria → Acidobacteria	1038	Open in IMG/M
3300020582\|Ga0210395_11050943	All Organisms → cellular organisms → Bacteria → Acidobacteria	602	Open in IMG/M
3300020582\|Ga0210395_11096385	All Organisms → cellular organisms → Bacteria → Acidobacteria	588	Open in IMG/M
3300021170\|Ga0210400_10450887	All Organisms → cellular organisms → Bacteria → Acidobacteria	1061	Open in IMG/M
3300021171\|Ga0210405_10335022	All Organisms → cellular organisms → Bacteria → Acidobacteria	1194	Open in IMG/M
3300021403\|Ga0210397_11191712	All Organisms → cellular organisms → Bacteria → Acidobacteria	592	Open in IMG/M
3300021404\|Ga0210389_10664941	All Organisms → cellular organisms → Bacteria → Acidobacteria	817	Open in IMG/M
3300021405\|Ga0210387_11617602	Not Available	551	Open in IMG/M
3300021433\|Ga0210391_10124733	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2027	Open in IMG/M
3300021433\|Ga0210391_10544423	Not Available	911	Open in IMG/M
3300021474\|Ga0210390_10274167	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1429	Open in IMG/M
3300021474\|Ga0210390_10311371	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	1334	Open in IMG/M
3300021477\|Ga0210398_11035163	Not Available	654	Open in IMG/M
3300022881\|Ga0224545_1029982	All Organisms → cellular organisms → Bacteria → Acidobacteria	776	Open in IMG/M
3300025406\|Ga0208035_1074352	Not Available	514	Open in IMG/M
3300025414\|Ga0208935_1018520	All Organisms → cellular organisms → Bacteria → Acidobacteria	928	Open in IMG/M
3300027117\|Ga0209732_1026464	All Organisms → cellular organisms → Bacteria → Acidobacteria	991	Open in IMG/M
3300027575\|Ga0209525_1009845	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2280	Open in IMG/M
3300027783\|Ga0209448_10188756	All Organisms → cellular organisms → Bacteria → Acidobacteria	685	Open in IMG/M
3300027855\|Ga0209693_10338019	All Organisms → cellular organisms → Bacteria → Acidobacteria	731	Open in IMG/M
3300027879\|Ga0209169_10523406	All Organisms → cellular organisms → Bacteria → Acidobacteria	622	Open in IMG/M
3300027884\|Ga0209275_10088492	All Organisms → cellular organisms → Bacteria → Acidobacteria	1564	Open in IMG/M
3300027884\|Ga0209275_10285331	Not Available	913	Open in IMG/M
3300027895\|Ga0209624_10779443	All Organisms → cellular organisms → Bacteria → Acidobacteria	628	Open in IMG/M
3300028560\|Ga0302144_10192449	All Organisms → cellular organisms → Bacteria → Acidobacteria	660	Open in IMG/M
3300028746\|Ga0302233_10069417	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	1419	Open in IMG/M
3300028759\|Ga0302224_10110547	Not Available	1061	Open in IMG/M
3300028795\|Ga0302227_10090143	All Organisms → cellular organisms → Bacteria → Acidobacteria	1290	Open in IMG/M
3300028863\|Ga0302218_10248450	All Organisms → cellular organisms → Bacteria → Acidobacteria	572	Open in IMG/M
3300028906\|Ga0308309_11131263	Not Available	676	Open in IMG/M
3300028906\|Ga0308309_11153242	All Organisms → cellular organisms → Bacteria → Acidobacteria	669	Open in IMG/M
3300029920\|Ga0302142_1261405	All Organisms → cellular organisms → Bacteria → Acidobacteria	522	Open in IMG/M
3300029999\|Ga0311339_10318823	All Organisms → cellular organisms → Bacteria → Acidobacteria	1662	Open in IMG/M
3300029999\|Ga0311339_10816137	Not Available	896	Open in IMG/M
3300030007\|Ga0311338_10027169	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	8098	Open in IMG/M
3300030007\|Ga0311338_10266439	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	1915	Open in IMG/M
3300030007\|Ga0311338_10969216	Not Available	829	Open in IMG/M
3300030043\|Ga0302306_10012876	Not Available	3577	Open in IMG/M
3300030043\|Ga0302306_10026655	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2363	Open in IMG/M
3300030053\|Ga0302177_10140119	All Organisms → cellular organisms → Bacteria → Acidobacteria	1370	Open in IMG/M
3300030058\|Ga0302179_10014505	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	3960	Open in IMG/M
3300030503\|Ga0311370_11558065	Not Available	687	Open in IMG/M
3300030509\|Ga0302183_10276987	All Organisms → cellular organisms → Bacteria → Acidobacteria	650	Open in IMG/M
3300030520\|Ga0311372_13074971	Not Available	502	Open in IMG/M
3300030760\|Ga0265762_1004821	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2415	Open in IMG/M
3300030878\|Ga0265770_1079286	All Organisms → cellular organisms → Bacteria → Acidobacteria	640	Open in IMG/M
3300030878\|Ga0265770_1116519	Not Available	558	Open in IMG/M
3300031028\|Ga0302180_10523828	All Organisms → cellular organisms → Bacteria → Acidobacteria	578	Open in IMG/M
3300031090\|Ga0265760_10003345	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	4686	Open in IMG/M
3300031233\|Ga0302307_10113383	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	1415	Open in IMG/M
3300031234\|Ga0302325_13297487	Not Available	512	Open in IMG/M
3300031236\|Ga0302324_101905351	Not Available	750	Open in IMG/M
3300031236\|Ga0302324_102604320	All Organisms → cellular organisms → Bacteria → Acidobacteria	614	Open in IMG/M
3300031236\|Ga0302324_102855763	All Organisms → cellular organisms → Bacteria → Acidobacteria	579	Open in IMG/M
3300031525\|Ga0302326_11297467	All Organisms → cellular organisms → Bacteria → Acidobacteria	992	Open in IMG/M
3300031708\|Ga0310686_102751128	All Organisms → cellular organisms → Bacteria → Acidobacteria	624	Open in IMG/M
3300031708\|Ga0310686_112210141	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	1348	Open in IMG/M
3300031708\|Ga0310686_115136529	Not Available	1367	Open in IMG/M
3300031718\|Ga0307474_10287622	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1264	Open in IMG/M
3300033545\|Ga0316214_1052842	All Organisms → cellular organisms → Bacteria → Acidobacteria	590	Open in IMG/M
3300033829\|Ga0334854_003939	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	3620	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.11%
Host-Associated	Host-Associated	0.89%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	68.14%
Aquatic	Environmental → Aquatic	30.97%
Plants	Host-Associated → Plants	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	44.25%
Freshwater	Environmental → Aquatic → Freshwater	30.97%
Peat	Environmental → Terrestrial → Peat	23.89%
Roots	Host-Associated → Plants → Roots	0.89%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	30.97%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	23.89%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	21.24%
Loam	Environmental → Terrestrial → Soil → Loam	19.47%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.54%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	23.89%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	22.12%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	19.47%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	15.04%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	8.85%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	6.19%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.65%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	20.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.16%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	11.50%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	11.50%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	8.85%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	8.85%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	7.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.19%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.77%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	1.77%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	1.77%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	1.77%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.89%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.89%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.89%
Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Roots	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001175	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3	Environmental	Open in IMG/M
3300001546	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300009547	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_40	Environmental	Open in IMG/M
3300009552	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_150	Environmental	Open in IMG/M
3300009640	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_40	Environmental	Open in IMG/M
3300009641	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_150	Environmental	Open in IMG/M
3300009644	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_10	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300009759	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_10	Environmental	Open in IMG/M
3300009764	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_40	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300014155	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_60_metaG	Environmental	Open in IMG/M
3300014158	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaG	Environmental	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014162	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300017935	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40	Environmental	Open in IMG/M
3300017940	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100	Environmental	Open in IMG/M
3300017988	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG	Environmental	Open in IMG/M
3300018009	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40	Environmental	Open in IMG/M
3300018017	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40	Environmental	Open in IMG/M
3300018019	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150	Environmental	Open in IMG/M
3300018021	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_150	Environmental	Open in IMG/M
3300018022	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300022881	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P1 20-24	Environmental	Open in IMG/M
3300025406	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10 (SPAdes)	Environmental	Open in IMG/M
3300025414	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10 (SPAdes)	Environmental	Open in IMG/M
3300027117	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027575	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028560	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E2_2	Environmental	Open in IMG/M
3300028746	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_1	Environmental	Open in IMG/M
3300028759	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_1	Environmental	Open in IMG/M
3300028795	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_1	Environmental	Open in IMG/M
3300028863	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_1	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029920	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_3	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030043	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_1	Environmental	Open in IMG/M
3300030053	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2	Environmental	Open in IMG/M
3300030058	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_1	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030509	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_2	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030760	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030878	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031028	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_2	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031233	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_2	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300033545	Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE4	Host-Associated	Open in IMG/M
3300033829	Peat soil microbial communities from Stordalen Mire, Sweden - 715 P2 1-5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12649J13570_10037611	3300001175	Forest Soil	MRNNLRMLGLALCVLPMYLHARTGQDLAQDHQPSQEQNTRSAESIPAGTIIPVILNSTLRSDKSRSGDAIEATVMQDVVVGSGETLR
JGI12659J15293_101476251	3300001546	Forest Soil	MKNNLTMLGFALCMLPISLVAETGQDVKLNYSQEQSARSEGRIPAGT
JGI12635J15846_1001644310	3300001593	Forest Soil	MKNTIRMLSLALCVLPMYLHAGTGLGLKQADQPAQEQNARSAEAIPAGTIIPVSLNSTLRSDKS
JGI12635J15846_102685993	3300001593	Forest Soil	MKNNLRMLGLVLCMLPMLLHAGTGQDLKQASQPTQEKNAGSGATIPAGTILPVSLNST
JGI12635J15846_104133261	3300001593	Forest Soil	MKNNLKMLGLALCMLPMYLHAGTGQDLKLAYQSAQAQNTQSAAPIPAGTILPITLNSALRSDKSGNGATITATVMQDVPLSTGKTLRKGS
JGIcombinedJ26739_1001116514	3300002245	Forest Soil	MKNNLRMLGLALCMLPMCLYAGTGQDLKPPYQPVQGQNTRSAEPIPAGTMIPVRLNSALRSDKTGSGAAVTATVMQDVPLGRGETLR
JGIcombinedJ26739_1001329171	3300002245	Forest Soil	MRNNLRILGLALCMLPMSLSAETGHDVKQDYQQGQNARSGERIPAGTIIPVILNSTLRSDKSGSGTTITATVMQDVPVGAGAILPRGSK
JGIcombinedJ26739_1002164354	3300002245	Forest Soil	MKNSLKMLGLALCTLPMYLHAGTGQDLKQEYQPAQQQSTQSAERIPAGTILPVSLNSDLRSDKNESGTAIIATIMQDVPLGRGESLRKGSML
JGIcombinedJ26739_1017741462	3300002245	Forest Soil	MKNNLRMLGLALCMLATSXVXXTGQDXKQDHQQEQNARSAERIPAGTIIPVSLDTTLRSDKTGRGATITATVMQDVP
Ga0062384_1005035321	3300004082	Bog Forest Soil	MKSNLKMLGLALCMLPMYLHAGTGQDPKPTYQPAHEQNTRSTEPIPAGTILPVSLNSTLRSDKSGS
Ga0070762_100219186	3300005602	Soil	MKNSLKMLGLALCTLPMYLHAGAAQEPKQEYQPAQQQSTQSAERIPAGTILPVSLNSDL
Ga0070762_101444791	3300005602	Soil	MKNNLKMLGLALCVLPMYLQAATGQDLKPAYQPAQGRNARSGGPIPADTILPVSLNTALRSDKSGSGT
Ga0070766_100617731	3300005921	Soil	MKNSLKMLGLALCTLPMYLHAGTGQDLKQEYQPAQQQSTQSAERIPAGTILPVSLNSDL
Ga0116136_11602942	3300009547	Peatland	MLGLALCVLPMYLQAATGQDLKSAYQPARGQNTRSAEPIPAGTILPVSLNTALRSDK
Ga0116138_10865882	3300009552	Peatland	MLGLALCVLPMYMQAATGQDLKPVYQSAQRQSTRSAEPIPEGTILPVSLNTALRSDKSG
Ga0116126_10208211	3300009640	Peatland	MKNNLRILGLALCLLPMYLHAGTEQDLKQDDQPAQEQNARSAEPIPEGTIIPVSLNSTLRSDKT
Ga0116120_12946771	3300009641	Peatland	MLGLALCVLPMYMQAATGQDLKPVYQSAQGQNTRSAEPIPAGTILPVSLNTALRSDKSGSGTTIIATVMQDVPLGKGETLRKG
Ga0116121_12578681	3300009644	Peatland	MKNNLMVLGLALCILPMSLAAETGQDVKRDYLQEQNARSTERIPAGTIIPVKLNSTLR
Ga0116135_12651172	3300009665	Peatland	MKNNLRMLSLALCMLPMYVHAATGQDLKPADQPAQEQNAQSESIPAGTIIPVSLNSTLRSDKSGSGDAVTATVMQDVIVGSGETLRKG
Ga0116101_10150933	3300009759	Peatland	MLGLALCVLPMYMQAATGQDLKPVYQSAQGQNTRSAEPIPAGTILPVSLNTALRSDKSGSGTTIIATVMQDVPLGKG
Ga0116134_10508511	3300009764	Peatland	MLGLALCVLPMYMQAATGQDLKPVYQSAQGQNTRSAEPIPAGTILPVSLNTALRSDKSGSGTTIIATV
Ga0074044_103879131	3300010343	Bog Forest Soil	MKNNLRMLGLALCMPPMYLHASTGQDLKQADQPAQEQNAQSESIPAGTIIPVSLNSALRSDKSGSGDAITATVMQDV
Ga0181524_103460211	3300014155	Bog	MKNNLRMLSLALCMLPIYLHAGTGQDLKQDDRPAQEQNARSAEAIPAGTIIPVSLN
Ga0181521_102347031	3300014158	Bog	MKNNLRILGLALCMLPMYLHAGTGQDLKQDDQPAPEQNARSAESIPAGTIIPVS
Ga0181530_101393791	3300014159	Bog	MKNNLRILGLALCMLPMYLHAGTGQDLKQDDQPAPEQNARSAESIPAGTIIPVSLNSTLRSDKSGSGGAITATVMQDVP
Ga0181538_102880142	3300014162	Bog	MKNNLRMLSLALCMLPIYLHAGTGQDLKQDDRPAQEQNARSAEAIPAGTIIPVSLNSTLRSDKSGSGGAITATVMQDVPLGM
Ga0181537_102877251	3300014201	Bog	MKNNLMVLGLALCILPMSLAAETGQDVKRDYLQEQNARSTERIPAGTIIPVKLNSTL
Ga0182015_102926071	3300014495	Palsa	MKDNLRMLALCMLPMCLHAGTGQGLKPTYQPAQRQNTRSAEPIPAGTIIPVSLNS
Ga0182024_105826063	3300014501	Permafrost	MKNNLRMLGLALCLLPMCLHAGTGRDLKPTYQPAQRQNTRSAEPIPAGTIIPVSLNSALRSDKTGSGAAVT
Ga0182024_109395701	3300014501	Permafrost	MKNNLKMLGLALCMLPIYLHAGTGQDLKQAYQPAQAQNTQTAEPIPAGTILPVS
Ga0181525_100417671	3300014654	Bog	MKNNLRMLSLALCVLPMYLHARTGQGLTQDHQPSQEQNTRSAESIPAGTIIPIILNS
Ga0181525_108204571	3300014654	Bog	MLGLALCVLPMYMQAATGQDLKPVYQSAQGQNTRSADPIPAGTILPVSLNTALRSDKSGSGTTIIATVMQDVPLGKGETLRK
Ga0181522_101576443	3300014657	Bog	MLSLALCVLPMSLHAGTGQDLKQASQPTQQQNAGYGVAIPAGTILPISLNSTLRSDKSGSGAAIT
Ga0181522_103948761	3300014657	Bog	MRNNLKMLGLALCVLPMYLHAGTGQDLKPTYQPAQGQNTRSAEPIPAGTILPVSLNSAL
Ga0187848_103833872	3300017935	Peatland	MKSNLKMLGLGLCMLPMYLHAGTGQNLSQDYQPSQEQNTRSAESIPAGTIIPVSLNSTLR
Ga0187853_101458731	3300017940	Peatland	MKNNLRVLGLALCMLPMCLHAGTGQDLKPAYQPAQGQNPRSGEPIPAGTIIPVSL
Ga0181520_101663021	3300017988	Bog	MKNNLMVLGLALCILPMSLAAETGQDVKRDYLQEQNARSTERIPAGTIIPVKLNSTLRSDKSGSGDAIT
Ga0187884_100479393	3300018009	Peatland	MKNNLRVLGLALCMLPMCLHAGTGQDLKPAYQPAQGQNTRSAEPIPAGTIIPVSLNSALRSDKTGSGTAVTATVMQDVPLGRGETLRRG
Ga0187872_100346702	3300018017	Peatland	MKNNLRMLGLALCMLPMYLQAGTEQDLKQDDQPAQEQNARSAEPIPEGTIIPVSLNSTLRSDKTASGDAITATVMQDVPLGTGKPCVPAPG
Ga0187874_101466821	3300018019	Peatland	MKNNLRVLGLALCMLPMCLHAGTGQDLKPAYQPAQGQNPRSGEPIPAGTIIPVSLNSSLRSDETRSGAAVTATVMQDV
Ga0187882_11364212	3300018021	Peatland	MKNNLRILGLALCLLPMYLHAGTEQDLKQDDQPAPEQNARSAESIPAGTIIPVSLNSTLRSDKSGSGGAITATVMQDVPL
Ga0187864_104273262	3300018022	Peatland	MRNNLRMLGLALCVLPMYMQAATGQDLKPVYQSAQGQNTRSAEPIPAGTILPVSLNTALRSDKSGSGTTIIATVMQDVPLGKG
Ga0187863_104092922	3300018034	Peatland	MKNNLRILGMALCMLPMWLRAETVQGLQPAYQSAPGQNPQPAELIPTGTIIPVSLNSALQSDK
Ga0187863_105060411	3300018034	Peatland	VKNNVGILRLALCLLPMYLHAGTGQDVKQAYRPGKVQSARPAELIPAGTIVPVRLDSTLRSD
Ga0187855_100744521	3300018038	Peatland	MKSTMRMLSLALCVLPMYLHAETQKSLERAYPPAQEQNTRSAESIPAGTIIPVSLNSTLRSDKSGSGD
Ga0187855_100928221	3300018038	Peatland	MKNNLRMLGLVLCMLPAHLHAGTGQGLKPAYQPAQGQSTRSAEAIPAGTIIPVSLNSAVRSDKTGGGAAVTATVM
Ga0187887_106306562	3300018043	Peatland	MKNNLRMLGLALCMLPMCLHASSGQNLKPSHQPAQEQAQSAAPIPAGTIVPV
Ga0187859_109001402	3300018047	Peatland	MKNNLMVLGLALCILPMSLAAETGQDVKRDYLQEQNARSTERIPAGTIIPVKLNSTLRSDKSGSGDAITATVMQDVPLGGGEML
Ga0210403_101141304	3300020580	Soil	MKSNLIISCLALCGLPMYLHAGTGQDPKTYQPAVQGQNAPTADRIPAGTILPVSLNSDLR
Ga0210403_109644172	3300020580	Soil	MKNRLKMLGLALCALPMYLHAGTGQDLKQGYQPAKEQNAQSAERIPAGTILPVTLNSDLRSDKNGSGTSIIATI
Ga0210395_103965741	3300020582	Soil	MKNNLKMLALALSVLPMYLQAGAGQDMKPVYQPAQGQNTRSAEPIPAGTILPVSLQTALRSDKSRS
Ga0210395_110509432	3300020582	Soil	MKSNLIISCLALCGLPMYLHAGTGQDPKTYQPAVQGQNAPTADRIPAGTILPVSLNSDLRSDKSP
Ga0210395_110963851	3300020582	Soil	MKNNLRMLGLALCMLPMYLHAGTGQNTRSAEHIPAGTILPVSLNSALRSDKGGSGATIIATVMQDVPLG
Ga0210400_104508873	3300021170	Soil	MKNNLRMLGLALCMLPMYLHAGTGQNTRSAEPIPAGTILPVSLNSALRSDKGGSGATIIATVMQ
Ga0210405_103350222	3300021171	Soil	MKNSLKMLGLALCTLPMYLHAGTGQDLKQEYQPAQQQSTQSAERIPAGTILPVSLNSDLRSDKNESGTAI
Ga0210397_111917121	3300021403	Soil	MKNNLTMLGFALCMLPMSLHARTGQDLKQDNHQEQNARSEGRIPAGTII
Ga0210389_106649412	3300021404	Soil	MKNNLTMLGFALCMLPMSLHARTGQDLKQDNHQEQNARSEGRIPAGTIIPVILKSDLRSDKSGNGATITARVMQDVPLG
Ga0210387_116176021	3300021405	Soil	MKNNLRMLGFALWMLPMCLHAGTGQNLNPTYQPAQGQNTRSADPLPASTIIPVRLNSTLRSDKTRSGAAVTATVMQDVPLGRG
Ga0210384_106758592	3300021432	Soil	MKNNLRMLGLALCMLPMWLHAGTGEDLKQTDQGAEPIPAGTILPVTLNSALRSDKSASGATMT
Ga0210391_101247331	3300021433	Soil	MRNNLRMLGLALCVLLMYMQAATGQDLKPVYQSSQGQNTRSAEPIPAGTILPLSLNTALRSDKSGSGTTIIA
Ga0210391_105444231	3300021433	Soil	MRNNLRMLGLALCLTPMYLQAATGQDLKPVYQTARGQNTRSAEPIPVGTILPVSLNTALRSDKSGAEQP
Ga0210390_102741673	3300021474	Soil	MKNNLTMLGLALFMLPMYLHARTGQDLKQGDQPSQEQNARSAETIPAGTIIPVSLNSTLRSDKSGSGDVI
Ga0210390_103113711	3300021474	Soil	MSNNLRMLGLALCVLPMYLQAATGQDLKPVYQSAQGQNTRPIPSGTILPVLLNTALRSDKSGSGTTIIATVIQDVPLGRGETLHKGSTLTGHVV
Ga0210398_110351631	3300021477	Soil	MKNNLRMLGLALCMLPMCLHAGTGQDLKTTYQPAQQQNSRSAEPIPAGTIIPVSLNSAL
Ga0224545_10299822	3300022881	Soil	MKNNLRMLSLALCMLPMYLHAGTEQDTKPAYQPAQEQNARSVEPIPAGTMIPVSLNSTLRSDKSASGAAITATVMQNVPLGAGKTLRAGSKVTGHV
Ga0208035_10743521	3300025406	Peatland	MKNNLRILGMALCMLPMWLRAETVQGLQPAYQSAPGQNTQPAELIPTGTIIPVSLNSALQSDKTGSGAAVTATVMQDVPLSGGETLRR
Ga0208935_10185201	3300025414	Peatland	MKSNLKMLGLGLCMLPMYLHAGTGQDVKQKYQPAQEQNTRSAEPIPAGTILPVSLNTALR
Ga0209732_10264641	3300027117	Forest Soil	MKNNLRMLGFALCMLPMCLHARTGQDMKPAYQAAERRNPRSAEPIPAGTIIPVSLNSVLR
Ga0209525_10098454	3300027575	Forest Soil	MRNNLRILGLALCMLPMSLSAETGHDVKQDYQQGQNARSGERIPAGTIIPVILNSTLRSDKS
Ga0209448_101887562	3300027783	Bog Forest Soil	MKNNLRMLGLALCMPPMYLHASTGQDLKQADQPAQEQNAQSESIPAGTIIPV
Ga0209693_103380191	3300027855	Soil	MKSNLMISCLALCALPMYLHAGTGQDPKTYQPAAQAPNTRTANAIPAGTILPVRLN
Ga0209169_105234061	3300027879	Soil	MRNNLRMLGLALCVLPMYLQAATGQDLKPAYQPAQGRNARSGGPIPADTILPVSLNTALRSDKSGSGTTIVATVIQDVP
Ga0209275_100884923	3300027884	Soil	MKNSLKMLGLALCTLPMYLHAGTGQDLKQEYQPAQQQSTQSAERIPAGTILPVSLNSDLRSDKNES
Ga0209275_102853312	3300027884	Soil	MKNNLRMLGLALCMLPMCLHAGTGQDLKTTYQPAQQQNSRSAEPIPAGTIIPVSLNSALRSDKTGSGAAVTATVMQDVPLG
Ga0209624_107794431	3300027895	Forest Soil	MRNNLRMLGLALCLTPMYLQAATGQDLKPAYQTAQGQNTRSAEPIPVGTILPVSLNTALRSDKSGSGTTIIATVMQDVPLGRG
Ga0209006_109553632	3300027908	Forest Soil	MRNNLRILGLALCMLPMSLSAETGHDVKQDYQQGQNARSGERIPHSVLVD
Ga0302144_101924491	3300028560	Bog	MRNNLRMLGLALCVLPMYMQAATGQDLKPVYQSAQGQNTRSADPIPAGTILPVSLNTALRSDKSGSGTTIIATVM
Ga0302233_100694173	3300028746	Palsa	MKNNLKMLGLALCVLPMYLQAATGQDLKPVYQPAQGQNTRSAEPIPAGTILPISLNSSLRSDKSG
Ga0302224_101105471	3300028759	Palsa	MKNNLRMLGLVLCMVPMYLHGGTGQDMKQTYQAVQDQSARSAEPIAAGTILPVTLNSTLR
Ga0302227_100901431	3300028795	Palsa	MKNNLRMLGLGLCMLPMYLHAGTGEDLKQEYRPAQQQNTSSAEPIPVGTIVPVSLNSAV
Ga0302218_102484502	3300028863	Palsa	MRNNLRMLGLALCMLPMYLQAATGQDLKPAYQPAQGQTTRSAEPIPAGTILPVSLNTALRSDKSGSGTTIIATVMQDVPLGKGETLRKGSK
Ga0308309_111312631	3300028906	Soil	MKNNLRMLGLALCMLPMCLHAGTGQDLKTTYQPAQQQNSRSAEPIPAGTIIPVSLNS
Ga0308309_111532422	3300028906	Soil	MRNNLRMLGLALCVLPMYMQAATGQDLKPVYQSAQGQNTRSAEPIPAGTILPVSLNTA
Ga0302142_12614052	3300029920	Bog	MKNNLKMLGLALCVLPMYLHAGTGQDLKQASQPTQEQNAGSGATIPAGTILPISLNSTLR
Ga0311339_103188234	3300029999	Palsa	MKNSLRMLGLALCMMPIYVDAGAGQDLKPAYQPAEKQNIGSLEPIPAGTILPVSLNSALRSDKS
Ga0311339_108161371	3300029999	Palsa	MKNNLRMLGLGLCMLPMYLHAGTGQDLKQEYQPAQEQNTRSAEPIPAGTILPVSLNTALRSDKSGSGT
Ga0311338_100271691	3300030007	Palsa	MKNNLKMLGLALCVLPMYLHAGTGQDLKPVYQTAQEQNTRSAEPIPAGTIIPVSLNSSLRSDK
Ga0311338_102664391	3300030007	Palsa	MKNNLKILSLALCMLPMYLHARAGQDLTEHHQGSQEQNTRSREPIPAGTMIPVRLNSSLRSDKSGSGDAIEATVMQDVV
Ga0311338_109692161	3300030007	Palsa	MKNNLRMLGLGLCMLPMYLHAGTGQDLKQEYQPAQEQNTRSAEPIPAGTILPVSLNTALRSDKSGSGATIIA
Ga0302306_100128765	3300030043	Palsa	MKNNLRMLGLVLCMVPMYLHGGTGQDMKQTYQAVQDQSARSAEPIAAGTILPVTLNSTLRSDKSGSGSTITATIMQDVPLGAGKILRRGS
Ga0302306_100266551	3300030043	Palsa	MKNNLRMLSLALCVLPMYLHARTGQGLTQDHQPSQEQNTRSAESIPAGTIIPIILNSTLRSDKS
Ga0302177_101401192	3300030053	Palsa	MKNNLRMLGLGLCMLPMYLHAGTGEDLKQEYRPAQQQNTSSAEPIPVGTIVPVSLNSAVRSDKSGSGATIIA
Ga0302179_100145051	3300030058	Palsa	MKNNLKMLGLALCVLPMYLHAGTGQDLKPVYQTAQEQNTRSAEPIPAGTIIPVSLNSSLRSDESGSGTTIIATVMQDVPLGQGGMLRKGSMLT
Ga0311370_115580651	3300030503	Palsa	MKNNLRMLGLGLCMLPMYLHAGTGQDVKQEYQPAQEQNTRSAEPIPAGTILSVSLNTALRSDKSGSGTTIIATVMQDVPLGKGETLR
Ga0302183_102769872	3300030509	Palsa	MKNNLKMLGLALCVLPMYLQAATGQDLKPVYQPAQGQNTRSAEPIPAGTILPISLNSSLRSDKSGSGTTIIATVMQDVPLGKGETIRKGS
Ga0311372_130749711	3300030520	Palsa	MKNNLKILSLALCMLPMYLHARAGQDLTEHHQGSQEQNTRSREPIPAGTMIPVRLNSSLRSDKSGSGDAIEA
Ga0265762_10048214	3300030760	Soil	MKSNLIISCLALCGLPMYLRAGTGQDPKTYQPAVQGQNAPTADRIPAGTILPVSLNSDLRSDKSPNGA
Ga0265770_10792861	3300030878	Soil	MKNILRILGLALCVLPMNLHAETGQDLKPAYPRAQEQNTRSGEPILAGTILPVTLNSTL
Ga0265770_11165191	3300030878	Soil	MKNSLKMLGLALCTLPMYLHAGAAQEPKQEYQPAQQQSTQSAERIPAGTILPVSLNSDLRSDKNESGTAIIATIMQDVPLGRGESL
Ga0302180_105238281	3300031028	Palsa	MKNNLKMLGLALCVLPMYLQAATGQDLKPVYQPAQGQNTRSAEPIPAGTILPISLNSSLRSDKSGSGTTIIATVMQDVPLGKGE
Ga0265760_100033451	3300031090	Soil	MKNSLKMLGLALCTLPMYLHAGAAQEPKQEYQPAQQQSTQSAERIPAGTILPVSLNSDLRSDKNESGTAII
Ga0302307_101133833	3300031233	Palsa	MRNNLRMLGLALCVLPMYMQAATGQDLKPVYQSAQGQNTRSAEPIPAGTILPVSLNTALRSDKSGSGTTIIATVMQDVP
Ga0302325_132974871	3300031234	Palsa	MRNNLRMLGLALCMLPMYLQAATGQDLKPAYQPAQGQTTRSAEPIPAGTILPVSLNTALRSDKSGSGTTIIATVMQDVPLGKGETLRKG
Ga0302324_1019053512	3300031236	Palsa	MKNTMRMLSLALCVLPMYLHAETQKGLERAYQPAQEHNAQSAEPIPAGTIIPVRLNSALR
Ga0302324_1026043201	3300031236	Palsa	MRNNLRMLGLALCMLPMYLQAATGQDLKPAYQPAQGQTTRSAEPIPAGTILPVSLNTALRSDKSGSGTTIIATVMQDVPLGKG
Ga0302324_1028557632	3300031236	Palsa	MKNNLRMLSLALCMLPMSLHAGTGQDLKQNDQSAREQSAESESIPAGTIIPV
Ga0302326_112974672	3300031525	Palsa	MKNNLKMLGLALCVLPMYLHAGTGQDLKPVYQTAQEQNTRSAEPIPAGTIIPVSLNSSLRSDKSGSG
Ga0310686_1027511282	3300031708	Soil	MKNHLRVLSLALLTLPVCLNTATAQDMKQAYQPAQEQNERSAELIPAGTIVPVTLNSNLRSDKSESGAAITATIMQDVPLGAGNT
Ga0310686_1122101413	3300031708	Soil	MRNNLRMLGLALCMLPISLHAGTGQDLKQASQPTQEQNAGSEATILEGTILPVILNSSLRSDTSGSGATIIATV
Ga0310686_1151365292	3300031708	Soil	MKNNLKMLGLMLCMLPMYLHARTGEDLKPAYQPAQEQSTRSAEPIPEGTILPVSLNSALRSDKSGS
Ga0307474_102876222	3300031718	Hardwood Forest Soil	MKNTLRMFGLLLCMLPMYLHAGSGQDLKQAYQPAQEQNTRSAAPIPAGTIIPVSLDSTLRSDKSGGGA
Ga0316214_10528422	3300033545	Roots	MKNNLRMLSLALCMLPMCLHAGTGQDLKYADQPAQEQNAQSASFPAGTIIPVSLNSTLRSDKSRSGDS
Ga0334854_003939_1_324	3300033829	Soil	MMVRKNHTLCSNSFRRNKMKNNLKMFGLALCVLPMYLHAGTGQDLKQASQPTQQQNAGYGVAIPAGTILPISLNSTLRSDKSGSGAAITATVMQDVPLGSGETLRKGS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F083356

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences