Metagenome / Metatranscriptome Family F083354

Basic Information
Family ID	F083354
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	68 residues
Representative Sequence	MSHWLDNTLQHLQVGEALIAGGVEGLIHGWQAPAADVIGKLHAGAERWQAAIRQMQVTVNLVDILRARTFL
Number of Associated Samples	85
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	48.21 %
% of genes near scaffold ends (potentially truncated)	28.32 %
% of genes from short scaffolds (< 2000 bps)	68.14 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.28

Most Common Taxonomy
Group	Bacteria (69.027 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa (13.274 % of family members)
Environment Ontology (ENVO)	Unclassified (33.628 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (56.637 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 67.68% β-sheet: 0.00% Coil/Unstructured: 32.32%
Feature Viewer

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Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF01124	MAPEG	6.19
PF00196	GerE	4.42
PF07969	Amidohydro_3	4.42
PF00106	adh_short	2.65
PF08669	GCV_T_C	2.65
PF01074	Glyco_hydro_38N	2.65
PF12697	Abhydrolase_6	1.77
PF13796	Sensor	1.77
PF05229	SCPU	1.77
PF08386	Abhydrolase_4	1.77
PF07726	AAA_3	1.77
PF01053	Cys_Met_Meta_PP	1.77
PF04389	Peptidase_M28	1.77
PF08494	DEAD_assoc	1.77
PF03795	YCII	1.77
PF00561	Abhydrolase_1	0.88
PF13594	Obsolete Pfam Family	0.88
PF00392	GntR	0.88
PF12146	Hydrolase_4	0.88
PF00656	Peptidase_C14	0.88
PF00563	EAL	0.88
PF13522	GATase_6	0.88
PF00144	Beta-lactamase	0.88
PF01061	ABC2_membrane	0.88
PF01381	HTH_3	0.88
PF13450	NAD_binding_8	0.88
PF00437	T2SSE	0.88
PF06253	MTTB	0.88
PF07730	HisKA_3	0.88
PF03699	UPF0182	0.88
PF00326	Peptidase_S9	0.88
PF00486	Trans_reg_C	0.88
PF12418	AcylCoA_DH_N	0.88
PF02469	Fasciclin	0.88
PF01738	DLH	0.88
PF02654	CobS	0.88
PF00107	ADH_zinc_N	0.88
PF11005	DUF2844	0.88
PF00491	Arginase	0.88
PF08028	Acyl-CoA_dh_2	0.88
PF13847	Methyltransf_31	0.88
PF13519	VWA_2	0.88
PF13561	adh_short_C2	0.88
PF14321	DUF4382	0.88
PF01882	DUF58	0.88
PF00033	Cytochrome_B	0.88
PF00550	PP-binding	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG0383	Alpha-mannosidase	Carbohydrate transport and metabolism [G]	2.65
COG0075	Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucG	Amino acid transport and metabolism [E]	1.77
COG5430	Fimbrial subunit ScuA/B, ScuA/B/SCPU domain	Extracellular structures [W]	1.77
COG4100	Cystathionine beta-lyase family protein involved in aluminum resistance	Inorganic ion transport and metabolism [P]	1.77
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	1.77
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.77
COG2008	Threonine aldolase	Amino acid transport and metabolism [E]	1.77
COG1982	Arginine/lysine/ornithine decarboxylase	Amino acid transport and metabolism [E]	1.77
COG1921	Seryl-tRNA(Sec) selenium transferase	Translation, ribosomal structure and biogenesis [J]	1.77
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	1.77
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	1.77
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	1.77
COG0156	7-keto-8-aminopelargonate synthetase or related enzyme	Coenzyme transport and metabolism [H]	1.77
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	1.77
COG1201	Lhr-like helicase	Replication, recombination and repair [L]	1.77
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.88
COG5598	Trimethylamine:corrinoid methyltransferase	Coenzyme transport and metabolism [H]	0.88
COG0010	Arginase/agmatinase family enzyme	Amino acid transport and metabolism [E]	0.88
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	0.88
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	0.88
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	0.88
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.88
COG4249	Uncharacterized conserved protein, contains caspase domain	General function prediction only [R]	0.88
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	0.88
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	0.88
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	0.88
COG0368	Cobalamin synthase CobS (adenosylcobinamide-GDP ribazoletransferase)	Coenzyme transport and metabolism [H]	0.88
COG2335	Uncaracterized surface protein containing fasciclin (FAS1) repeats	General function prediction only [R]	0.88
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	0.88
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.88
COG1721	Uncharacterized conserved protein, DUF58 family, contains vWF domain	Function unknown [S]	0.88
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.88
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.88
COG1615	Uncharacterized membrane protein, UPF0182 family	Function unknown [S]	0.88
COG1290	Cytochrome b subunit of the bc complex	Energy production and conversion [C]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	69.91 %
Unclassified	root	N/A	30.09 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	69.91 %
Unclassified	root	N/A	30.09 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	69.03 %
Unclassified	root	N/A	30.09 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.88 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	48.67 %
Unclassified	root	N/A	30.09 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.88 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.09 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7.96 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	7.08 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	6.19 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.88 %
Streptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.09 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.54 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2.65 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.88 %
Streptophytina	subphylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina	0.88 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.09 %
Burkholderiales genera incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis	0.88 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	0.88 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.88 %
Steroidobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae	0.88 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	0.88 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.09 %
Methylibium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium	0.88 %
unclassified Steroidobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae	0.88 %
Tracheophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta	0.88 %
Rhodanobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rhodanobacter	0.88 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.88 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.09 %
Steroidobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	0.88 %
Euphyllophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta	0.88 %
Methylibium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium	0.88 %
Rhodanobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rhodanobacter	0.88 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.88 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.09 %
Spermatophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta	0.88 %
Steroidobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	0.88 %
Methylibium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium	0.88 %
Rhodanobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rhodanobacter	0.88 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.88 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.09 %
Magnoliopsida	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	0.88 %
Steroidobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	0.88 %
Methylibium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium	0.88 %
Rhodanobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rhodanobacter	0.88 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.88 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.09 %
Mesangiospermae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae	0.88 %
Steroidobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	0.88 %
Methylibium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium	0.88 %
Rhodanobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rhodanobacter	0.88 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.88 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.09 %
eudicotyledons	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons	0.88 %
Steroidobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	0.88 %
Methylibium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium	0.88 %
Rhodanobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rhodanobacter	0.88 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.88 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.09 %
Gunneridae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae	0.88 %
Steroidobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	0.88 %
Methylibium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium	0.88 %
Rhodanobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rhodanobacter	0.88 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.88 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.09 %
Pentapetalae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae	0.88 %
Steroidobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	0.88 %
Methylibium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium	0.88 %
Rhodanobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rhodanobacter	0.88 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.88 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.09 %
asterids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids	0.88 %
Steroidobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	0.88 %
Methylibium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium	0.88 %
Rhodanobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rhodanobacter	0.88 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.88 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.09 %
campanulids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → campanulids	0.88 %
Steroidobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	0.88 %
Methylibium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium	0.88 %
Rhodanobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rhodanobacter	0.88 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.88 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.09 %
Asterales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → campanulids → Asterales	0.88 %
Steroidobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	0.88 %
Methylibium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium	0.88 %
Rhodanobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rhodanobacter	0.88 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.88 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.09 %
Asteraceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → campanulids → Asterales → Asteraceae	0.88 %
Steroidobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	0.88 %
Methylibium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium	0.88 %
Rhodanobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rhodanobacter	0.88 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.88 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.09 %
Asteroideae	subfamily	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → campanulids → Asterales → Asteraceae → Asteroideae	0.88 %
Steroidobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	0.88 %
Methylibium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium	0.88 %
Rhodanobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rhodanobacter	0.88 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.88 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.09 %
Anthemideae	tribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → campanulids → Asterales → Asteraceae → Asteroideae → Anthemideae	0.88 %
Steroidobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	0.88 %
Methylibium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium	0.88 %
Rhodanobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rhodanobacter	0.88 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.88 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.09 %
Anthemidinae	subtribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → campanulids → Asterales → Asteraceae → Asteroideae → Anthemideae → Anthemidinae	0.88 %
Steroidobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	0.88 %
Methylibium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium	0.88 %
Rhodanobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rhodanobacter	0.88 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.88 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.09 %
Tanacetum	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → campanulids → Asterales → Asteraceae → Asteroideae → Anthemideae → Anthemidinae → Tanacetum	0.88 %
Steroidobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	0.88 %
Methylibium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium	0.88 %
Rhodanobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rhodanobacter	0.88 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.88 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.09 %
Tanacetum cinerariifolium	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → campanulids → Asterales → Asteraceae → Asteroideae → Anthemideae → Anthemidinae → Tanacetum → Tanacetum cinerariifolium	0.88 %
Steroidobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	0.88 %
Methylibium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium	0.88 %
Rhodanobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rhodanobacter	0.88 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.88 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001593\|JGI12635J15846_10190253	All Organisms → cellular organisms → Bacteria	1366	Open in IMG/M
3300001593\|JGI12635J15846_10342119	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	920	Open in IMG/M
3300004091\|Ga0062387_100157029	Not Available	1318	Open in IMG/M
3300004091\|Ga0062387_101503141	Not Available	540	Open in IMG/M
3300004092\|Ga0062389_101498682	All Organisms → cellular organisms → Bacteria	858	Open in IMG/M
3300004092\|Ga0062389_102792557	Not Available	652	Open in IMG/M
3300004152\|Ga0062386_100001152	All Organisms → cellular organisms → Bacteria → Proteobacteria	17194	Open in IMG/M
3300004152\|Ga0062386_100049826	All Organisms → cellular organisms → Bacteria → Proteobacteria	3149	Open in IMG/M
3300004152\|Ga0062386_100714872	All Organisms → cellular organisms → Bacteria	823	Open in IMG/M
3300005591\|Ga0070761_10015103	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	4299	Open in IMG/M
3300005921\|Ga0070766_10955502	Not Available	588	Open in IMG/M
3300006041\|Ga0075023_100119424	Not Available	935	Open in IMG/M
3300006052\|Ga0075029_100003297	All Organisms → cellular organisms → Bacteria → Proteobacteria	9089	Open in IMG/M
3300006057\|Ga0075026_100073326	Not Available	1655	Open in IMG/M
3300006059\|Ga0075017_100262825	All Organisms → cellular organisms → Bacteria → Proteobacteria	1265	Open in IMG/M
3300009029\|Ga0066793_10436860	Not Available	750	Open in IMG/M
3300009029\|Ga0066793_10622012	Not Available	615	Open in IMG/M
3300009500\|Ga0116229_10018415	All Organisms → cellular organisms → Bacteria → Proteobacteria	9092	Open in IMG/M
3300009500\|Ga0116229_10042358	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	4723	Open in IMG/M
3300009500\|Ga0116229_10077039	All Organisms → cellular organisms → Bacteria → Proteobacteria	3101	Open in IMG/M
3300009518\|Ga0116128_1196418	Not Available	567	Open in IMG/M
3300009665\|Ga0116135_1471374	Not Available	518	Open in IMG/M
3300009683\|Ga0116224_10513876	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	571	Open in IMG/M
3300009698\|Ga0116216_10079894	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2013	Open in IMG/M
3300009700\|Ga0116217_10076478	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2336	Open in IMG/M
3300009701\|Ga0116228_10125162	All Organisms → cellular organisms → Bacteria → Proteobacteria	1891	Open in IMG/M
3300009709\|Ga0116227_10152255	All Organisms → cellular organisms → Bacteria → Proteobacteria	1823	Open in IMG/M
3300009787\|Ga0116226_11612189	Not Available	599	Open in IMG/M
3300010341\|Ga0074045_10014647	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6348	Open in IMG/M
3300010341\|Ga0074045_10182630	Not Available	1412	Open in IMG/M
3300010379\|Ga0136449_100032105	All Organisms → cellular organisms → Bacteria → Proteobacteria	12636	Open in IMG/M
3300010379\|Ga0136449_100035113	All Organisms → cellular organisms → Bacteria → Proteobacteria	11912	Open in IMG/M
3300010379\|Ga0136449_100811079	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1544	Open in IMG/M
3300010379\|Ga0136449_102937699	Not Available	668	Open in IMG/M
3300014158\|Ga0181521_10000230	All Organisms → cellular organisms → Bacteria → Proteobacteria	66637	Open in IMG/M
3300014162\|Ga0181538_10012029	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6591	Open in IMG/M
3300014162\|Ga0181538_10091147	All Organisms → cellular organisms → Bacteria → Proteobacteria	1811	Open in IMG/M
3300014164\|Ga0181532_10135017	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → campanulids → Asterales → Asteraceae → Asteroideae → Anthemideae → Anthemidinae → Tanacetum → Tanacetum cinerariifolium	1500	Open in IMG/M
3300014165\|Ga0181523_10627579	Not Available	589	Open in IMG/M
3300014168\|Ga0181534_10000143	All Organisms → cellular organisms → Bacteria → Proteobacteria	50561	Open in IMG/M
3300014169\|Ga0181531_11041449	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rhodanobacter	514	Open in IMG/M
3300014200\|Ga0181526_10036539	All Organisms → cellular organisms → Bacteria → Proteobacteria	3162	Open in IMG/M
3300014499\|Ga0182012_10221528	All Organisms → cellular organisms → Bacteria → Proteobacteria	1314	Open in IMG/M
3300014501\|Ga0182024_10576906	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1413	Open in IMG/M
3300014638\|Ga0181536_10358682	Not Available	661	Open in IMG/M
3300014654\|Ga0181525_10501046	All Organisms → cellular organisms → Bacteria	672	Open in IMG/M
3300014838\|Ga0182030_10197420	All Organisms → cellular organisms → Bacteria → Proteobacteria	2417	Open in IMG/M
3300017946\|Ga0187879_10019719	All Organisms → cellular organisms → Bacteria	4170	Open in IMG/M
3300017955\|Ga0187817_10032362	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	3173	Open in IMG/M
3300017955\|Ga0187817_10138805	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1543	Open in IMG/M
3300018020\|Ga0187861_10300462	Not Available	688	Open in IMG/M
3300018034\|Ga0187863_10333882	All Organisms → cellular organisms → Bacteria	843	Open in IMG/M
3300018038\|Ga0187855_10267517	All Organisms → cellular organisms → Bacteria → Proteobacteria	1002	Open in IMG/M
3300018044\|Ga0187890_10413294	Not Available	757	Open in IMG/M
3300019284\|Ga0187797_1567926	Not Available	562	Open in IMG/M
3300021171\|Ga0210405_10589019	Not Available	867	Open in IMG/M
3300021178\|Ga0210408_11327212	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300021420\|Ga0210394_10705890	All Organisms → cellular organisms → Bacteria	884	Open in IMG/M
3300021474\|Ga0210390_10010777	All Organisms → cellular organisms → Bacteria → Proteobacteria	7462	Open in IMG/M
3300022515\|Ga0224546_1033489	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300022532\|Ga0242655_10294293	Not Available	527	Open in IMG/M
3300022724\|Ga0242665_10272395	Not Available	583	Open in IMG/M
3300022850\|Ga0224552_1000004	All Organisms → cellular organisms → Bacteria → Proteobacteria	86103	Open in IMG/M
3300027648\|Ga0209420_1026103	All Organisms → cellular organisms → Bacteria → Proteobacteria	1853	Open in IMG/M
3300027676\|Ga0209333_1148161	Not Available	632	Open in IMG/M
3300027807\|Ga0209208_10307828	Not Available	806	Open in IMG/M
3300027812\|Ga0209656_10329928	All Organisms → cellular organisms → Bacteria	698	Open in IMG/M
3300027812\|Ga0209656_10345471	All Organisms → cellular organisms → Bacteria	678	Open in IMG/M
3300027824\|Ga0209040_10037476	All Organisms → cellular organisms → Bacteria → Proteobacteria	3012	Open in IMG/M
3300027824\|Ga0209040_10141389	All Organisms → cellular organisms → Bacteria	1310	Open in IMG/M
3300027853\|Ga0209274_10034735	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2350	Open in IMG/M
3300027860\|Ga0209611_10058463	All Organisms → cellular organisms → Bacteria → Proteobacteria	2955	Open in IMG/M
3300027894\|Ga0209068_10013953	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3851	Open in IMG/M
3300027898\|Ga0209067_10207077	All Organisms → cellular organisms → Bacteria	1056	Open in IMG/M
3300028560\|Ga0302144_10026842	All Organisms → cellular organisms → Bacteria → Proteobacteria	1853	Open in IMG/M
3300028745\|Ga0302267_10473069	Not Available	509	Open in IMG/M
3300028745\|Ga0302267_10481650	All Organisms → cellular organisms → Bacteria → Proteobacteria	503	Open in IMG/M
3300028747\|Ga0302219_10329619	All Organisms → cellular organisms → Bacteria	595	Open in IMG/M
3300028808\|Ga0302228_10127810	All Organisms → cellular organisms → Bacteria	1179	Open in IMG/M
3300028808\|Ga0302228_10530682	Not Available	518	Open in IMG/M
3300028879\|Ga0302229_10239746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	823	Open in IMG/M
3300029883\|Ga0311327_10161699	All Organisms → cellular organisms → Bacteria → Proteobacteria	1573	Open in IMG/M
3300029951\|Ga0311371_10080000	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium	5312	Open in IMG/M
3300029955\|Ga0311342_11131623	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300029999\|Ga0311339_10654468	Not Available	1036	Open in IMG/M
3300030043\|Ga0302306_10285015	All Organisms → cellular organisms → Bacteria → Proteobacteria	634	Open in IMG/M
3300030399\|Ga0311353_10609326	All Organisms → cellular organisms → Bacteria → Proteobacteria	953	Open in IMG/M
3300030509\|Ga0302183_10074444	All Organisms → cellular organisms → Bacteria → Proteobacteria	1340	Open in IMG/M
3300030693\|Ga0302313_10281518	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300030740\|Ga0265460_12053542	Not Available	596	Open in IMG/M
3300030741\|Ga0265459_14113088	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	510	Open in IMG/M
3300030760\|Ga0265762_1015242	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1391	Open in IMG/M
3300031234\|Ga0302325_10126687	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4668	Open in IMG/M
3300031236\|Ga0302324_101741614	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	795	Open in IMG/M
3300031236\|Ga0302324_102738949	Not Available	595	Open in IMG/M
3300031261\|Ga0302140_10697977	All Organisms → cellular organisms → Bacteria → Proteobacteria	742	Open in IMG/M
3300031525\|Ga0302326_11344078	All Organisms → cellular organisms → Bacteria	970	Open in IMG/M
3300031708\|Ga0310686_101363836	Not Available	607	Open in IMG/M
3300031708\|Ga0310686_102585280	All Organisms → cellular organisms → Bacteria → Proteobacteria	19259	Open in IMG/M
3300031708\|Ga0310686_102764814	All Organisms → cellular organisms → Bacteria → Proteobacteria	2747	Open in IMG/M
3300031708\|Ga0310686_103467415	Not Available	716	Open in IMG/M
3300031708\|Ga0310686_106896963	All Organisms → cellular organisms → Bacteria	3758	Open in IMG/M
3300031708\|Ga0310686_110498259	Not Available	562	Open in IMG/M
3300031708\|Ga0310686_119260318	All Organisms → cellular organisms → Bacteria	2993	Open in IMG/M
3300031837\|Ga0302315_10563886	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M
3300032072\|Ga0326631_117380	Not Available	521	Open in IMG/M
3300032160\|Ga0311301_10002849	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	64884	Open in IMG/M
3300032160\|Ga0311301_10069079	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	7499	Open in IMG/M
3300032160\|Ga0311301_10202976	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3392	Open in IMG/M
3300032160\|Ga0311301_12531244	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	573	Open in IMG/M
3300032515\|Ga0348332_13538644	Not Available	508	Open in IMG/M
3300034163\|Ga0370515_0014614	All Organisms → cellular organisms → Bacteria	3666	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.92%
Host-Associated	Host-Associated	7.08%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	60.18%
Aquatic	Environmental → Aquatic	32.74%
Plants	Host-Associated → Plants	7.08%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	38.94%
Freshwater	Environmental → Aquatic → Freshwater	27.43%
Peat	Environmental → Terrestrial → Peat	20.35%
Peat Moss	Host-Associated → Plants → Peat Moss	7.08%
Sediment	Environmental → Aquatic → Sediment	5.31%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.89%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	27.43%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	24.78%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	20.35%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.96%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified	7.08%
Loam	Environmental → Terrestrial → Soil → Loam	6.19%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.31%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	23.89%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	20.35%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.70%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	7.08%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified	7.08%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.19%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.31%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	4.42%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.54%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.77%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.77%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	13.27%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	9.73%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	9.73%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	8.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.08%
Host-Associated	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated	7.08%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	5.31%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	5.31%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	5.31%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.54%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.65%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.77%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.77%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.77%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	1.77%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	1.77%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	1.77%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.89%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.89%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.89%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300009029	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189	Environmental	Open in IMG/M
3300009500	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG	Host-Associated	Open in IMG/M
3300009518	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300009701	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum fallax MG	Host-Associated	Open in IMG/M
3300009709	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fb - Sphagnum magellanicum MG	Host-Associated	Open in IMG/M
3300009787	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fa - Sphagnum fallax MG	Host-Associated	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300014158	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaG	Environmental	Open in IMG/M
3300014162	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014168	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014499	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2S metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014638	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG	Environmental	Open in IMG/M
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017938	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300018020	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_100	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300019284	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300022515	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P2 1-5	Environmental	Open in IMG/M
3300022532	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022850	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 1-5	Environmental	Open in IMG/M
3300027648	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027676	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)	Environmental	Open in IMG/M
3300027807	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum fallax MG (SPAdes)	Host-Associated	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027860	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG (SPAdes)	Host-Associated	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300028560	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E2_2	Environmental	Open in IMG/M
3300028745	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E1_3	Environmental	Open in IMG/M
3300028747	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_2	Environmental	Open in IMG/M
3300028808	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_2	Environmental	Open in IMG/M
3300028879	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_3	Environmental	Open in IMG/M
3300029883	I_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300029955	II_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030043	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_1	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030509	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_2	Environmental	Open in IMG/M
3300030693	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_2	Environmental	Open in IMG/M
3300030740	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ARE Co-assembly	Environmental	Open in IMG/M
3300030741	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ANR Co-assembly	Environmental	Open in IMG/M
3300030760	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031261	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_1	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031837	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_1	Environmental	Open in IMG/M
3300032072	Soil microbial communities from Bohemian Forest, Czech Republic ? CSI2 metaT (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300034163	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.28
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.28
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F083354

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12635J15846_101902531	3300001593	Forest Soil	LYNTLQHLQRGDALVASGVSALIHSWQASADVIGKLCTGDGERWQAAIRQIQAPANLAEILRARPSFWSGT*
JGI12635J15846_103421191	3300001593	Forest Soil	MSHWLDNTLQHLQLGEALIASGVDGLFHGWQASTDVLGKLCTGTDRWHALIRQMQTPVNFAEILRARALL*
Ga0062387_1001570291	3300004091	Bog Forest Soil	MNHGLDNSWRNLRLGEALITSGVEELVHGWQKASSGLIGKIRAGGAERWQAAIRQIQAAPVNLAEILRARALL*
Ga0062387_1015031411	3300004091	Bog Forest Soil	MNDVFYKTLQHLHRGDALITSGVNGLIHSWHASTEVIGNLCTGDAERWQATIRKIQAPVNLAEILRARTSCRSDI*
Ga0062389_1014986822	3300004092	Bog Forest Soil	MNHWLDHTLDRLQLGETLIASGVDGLFQGWRASTEVIGKLCTGGAERWQAAMRQIQAPVKINLADILRARTFT*
Ga0062389_1027925572	3300004092	Bog Forest Soil	MNDVFYKTVQHLHRSDALITNGVKRLIHSWQASTEVVGKLCTGHAERWQATIRKIQAPANLADILRARIACRAGS*
Ga0062386_1000011522	3300004152	Bog Forest Soil	MNHWLDSTVRQLQLGETLRAGGLDGLFRGWQQASTNVIGKLCTGAERWQAAIRQIQAPVNFADALRARAIR*
Ga0062386_1000498263	3300004152	Bog Forest Soil	VNHAFDSTLQHLHLGEALIASGVEGLYHTWQASTDIIGKLCAGGAERWQAAIRQFQAPVNLADILRARTFLRTPASP*
Ga0062386_1007148721	3300004152	Bog Forest Soil	RGDALITSGVNGLIHSWQASTEVIGKLCTGHAERWQATIRKIQAPVNFAEILRARTSCWSDT*
Ga0070761_100151032	3300005591	Soil	MSHWLDNTLQHLHVGEALIAGGVEGLIHGWQAPAADVIGKLHAGAERWQAAIRQMQLTVNATVNLVDILRARTFL*
Ga0070766_109555022	3300005921	Soil	MNHWLDSTLERLQLGETLIASGVDGLFHGWRASTDVIGKLCTGGAERWQAAVRQLQAPVKVNLAEILRARTFI*
Ga0075023_1001194242	3300006041	Watersheds	MNYWLNDTLQHLPLGEALIAGGVGGLVHGLKAQADAIGELCTGPERWQAAIRQIQAPFQATVNLAEILRART*
Ga0075029_1000032977	3300006052	Watersheds	MNDAFYQTLQHLHRGDALIATGVNGLVHGWQASTEVIGKLCTSHAERWQATIRKIQAPVNLAEILRARTSCWSDT*
Ga0075026_1000733264	3300006057	Watersheds	MNYWLNDTLQHLPLGEALIAGGVGGLVHGLKAQADAIGELCTGPERWQAAIRQIQAPFQA
Ga0075017_1002628251	3300006059	Watersheds	MNHWLNDTLQHLQLGEALIAGGVDGLVHGLRAQADVIGELCTGAERWQAAIRQIQAPIQATVNLADILRARAGL*
Ga0066793_104368602	3300009029	Prmafrost Soil	SLLADGVDGLCQGWQASTDVIGKLCTTGAERWQTVVRQMQTPVNFADILRARALL*
Ga0066793_106220122	3300009029	Prmafrost Soil	SLLADGVDGLCQGWQASTDVIGKLCTTGAERWQTVVRQMQTSANFADILRARALL*
Ga0116229_100184155	3300009500	Host-Associated	MSHWLENTLKHLQLGEALISGGVESLWHGWQGPAGVIGEICTGAERWQAAIRGMSTPVNLAEILRARKFA*
Ga0116229_100423583	3300009500	Host-Associated	MEHWLHDTWQHLQLGEALMAGGVESLLHGWQAPAADVIGKLCTGAERWQAAIREIHATVSLADILRARTPL*
Ga0116229_100770393	3300009500	Host-Associated	MEHWLHDTWQHLHLGEALVAGGVDSLLHGWQAPAANMIGKLCTGAERWQAAIREIHATVSLADILRARTLL*
Ga0116128_11964181	3300009518	Peatland	MNQPLDSTLQHLHLGEALITSGVEGLFHTWQASTEVIGKLCAGGAERWQAAIRQFQAPVNLADILRARTFFGR*
Ga0116135_14713741	3300009665	Peatland	MNQPLDSTLQHLHLGEALITSGVEGLFHTWQASTEVIGKLCAGGAERWQAAIRQFQAPVNLADILRART
Ga0116224_105138762	3300009683	Peatlands Soil	GEALISSGVDGLFRGWQASAEVVGMVRTGANRWQAVIRQMQSSVNFADILRARAPL*
Ga0116216_100798943	3300009698	Peatlands Soil	LIASGVDGLVHGWQASTEALGKLCTGAERWQAAIRQVQATTVNFADILRARNLL*
Ga0116217_100764782	3300009700	Peatlands Soil	MDHWLDNTWQHLQLGEALIASGVDGLVHGWQASTEALGKLCTGAERWQAAIRQVQATTVNFADILRARNLL*
Ga0116228_101251623	3300009701	Host-Associated	MEHWLHDTWQHLQLGEALMNGWQAPAADVIGKLCTGAERWHAALREIQATVSLADILRARTPL*
Ga0116227_101522552	3300009709	Host-Associated	MSHWLENTLQHLQLGEALISGGVESLWHGWQGPAGVIGEICTGAERWQAAIRGMSTPVNLAEILRARKFA*
Ga0116226_116121891	3300009787	Host-Associated	MNHWLTHTVQHLQLGEALVAGGVDGLLRGWRAPGNLVGKLCTGAERWQAAIRDMPVTANLAEILRARTFR*
Ga0074045_100146474	3300010341	Bog Forest Soil	MNHWLDNSWQHLQLGEALIASGVDGLVHGWQASTEALGKLCPGAERWQAAIRQVQATTVNFADILRARNLL*
Ga0074045_101826303	3300010341	Bog Forest Soil	MNHWLDNTWQHLQLGEALIASGVDGLVHGWQASTEALGKLYPGAERWQSAIRQVQATTVNFADILRARNLL*
Ga0136449_10003210515	3300010379	Peatlands Soil	MNHALDSTLQQLPLGEALIASGVEGLFHTWQASTEVIGKLCAGGAERWQAAIRQFQAPVNLADILRARTFLRTLSSP*
Ga0136449_1000351134	3300010379	Peatlands Soil	MNHCLDNTWQHLQLGEALIAGGVDGLVHGWQASTEALDKLCTGAERWQAAIRQMQATTVNFADILRARSFL*
Ga0136449_1008110793	3300010379	Peatlands Soil	MNHWLDDTLDRLQLGETLIASGVDGLFHGCRASTEAIGKLCTGGAERWQAAVRQLQAPVKVNLAEILRARTFI*
Ga0136449_1029376991	3300010379	Peatlands Soil	MNHWLDNTLRHLQLSDTLRAGGLEGLFHGWQQASTNVIGKLGTGAERWQAAIRQIQAPVNFADALRARTIP*
Ga0181521_100002309	3300014158	Bog	MSHWLDNTLQNMQLGEALMAGGVEGLFHGWQASTSDLIGKLCTGAERWHAVIRQIQTPVSFAEILRARASL*
Ga0181538_100120294	3300014162	Bog	MNHWLDNTWQHLQLGEALIASGVDGLVHGWQASTEALGKLYPGAERWQAAIRQVQATTVNFADILRARNLL*
Ga0181538_100911472	3300014162	Bog	MQLGEALMAGGVEGLFHGWQASTSDLIGKLCTGAERWHAVIRQIQTPVSFAEILRARASL
Ga0181532_101350172	3300014164	Bog	HWLDNTFERLQLGETLIASGVDQLFHGWHASTGVIGKLCTGGAERWQAAVRQMQAPVKVNLAEILRARTFI*
Ga0181523_106275791	3300014165	Bog	MNHWLDNTFERLQLGETLIASGVDQLFHGWHASTGVIGKLCTGGAERWQAAVRQMQAPVKVNLAEILRARTFI*
Ga0181534_1000014327	3300014168	Bog	MNHWLENPLDHLALGESLIASGVDGLVHGWQASTDALGKLCTTGAERWQAVIRQMQTPVNFADILRARNPF*
Ga0181531_110414492	3300014169	Bog	MNHALHNPLDELHLGETLLASGVEKLFQSWQASSEVIGKLCAGGAERWQAAIRQMQAPVDLADILRARTFLNPTR*
Ga0181526_100365392	3300014200	Bog	MNHWLDNTLQHLHLGEALVAGGVDGLIHHASQSSAEVIGKLCTGAERWQAAIRQMQVPVVNLAEILRARTFR*
Ga0182012_102215283	3300014499	Bog	MSHWLDNTLQHLQVGEALIQGWQAPAADVIGRLHAGAERW
Ga0182024_105769062	3300014501	Permafrost	MSHWIENTLQHLQVGEALVAGGVEGLFHGWQAPADVMGKICTGAERWQAAIRQMHATVNLVEILRARTFI*
Ga0181536_103586822	3300014638	Bog	GEALMAGGVEGLFHGWQASTSDLIGKLCTGAERWHAVIRQIQTSVSFAEILRARASL*
Ga0181525_105010462	3300014654	Bog	MNHALHNPLDELHLGETLLASGVEKLFQSWQASSEVIGKLCAGGAERWQAAIRQMQAPVDLADILRA
Ga0182030_101974202	3300014838	Bog	MSHWLDNTLQHLQVGEALIQGWQAPAADVIGRLHAGAERWQAAIRQMHATVNATVNLVDILRARTFL*
Ga0187854_104136211	3300017938	Peatland	ALITSGVEGLFHTWQASTEVIGKLCAGGAERWQAAIRQFQAPVNLADILRARTFFGR
Ga0187879_100197193	3300017946	Peatland	MNHWLDNTLQHLHLGEALVAGGVDGLIHHASQSSAEVIGKLCTGAERWQAAIRQMQVPVVNLAEILRARTFR
Ga0187817_100323625	3300017955	Freshwater Sediment	MNHWLEKTWQHLQVGEALIADGVEGLFRGWQASAEVIGKLCTGADRWQAVIRQMQSPVNLADILRARTLP
Ga0187817_101388051	3300017955	Freshwater Sediment	MNHWLDNTWQHLQLGEALIAGGVDGLVHGWQASTEALGKLCTGAERWQAAIRQVQATTVNFADILRARSFF
Ga0187861_103004622	3300018020	Peatland	TLQHLHLGEALITSGVEGLFHTWQASSDVIGKLCAGGAERWQAAIRQFQAPVNLADILRARTFFGR
Ga0187863_103338822	3300018034	Peatland	VSHWLDNTLQHLQIGEALMAGGVEGLFHGWQSPSDVIGKICTGAERWQAAIRQMPATVNLAEILRARTFR
Ga0187855_102675172	3300018038	Peatland	MNHWLDNTWQHLQLGEALIASGVDGLVHGWQASTEALGKLYPGAERWQSAIRQVQATTVNFADILRARNLL
Ga0187890_104132942	3300018044	Peatland	MNHWLDNTFERLQLGETLIASGVDQLFHGWHASTGVIGKLCTGGAERWQAAVRQMQAPVKVNLAEILRARTFI
Ga0187797_15679262	3300019284	Peatland	LSEALIEGGVEGLFHGWQASTADFIGKLCTGAERWQTVIRQIQTPVNFADILRARTLP
Ga0210405_105890192	3300021171	Soil	MNHWLDSTLERLQLGETLIASGVDGLFHGWRASTDVIGKLCTGGAERWQAAVRQLQAPVKVNLAEILRARTFI
Ga0210408_113272121	3300021178	Soil	MDHWLDNTLERLQLGENFIASGVDGLFHGWRASTDVIGKLCTGGAERWQAAVRQLQAPVKVNLAEILRARTFI
Ga0210394_107058902	3300021420	Soil	MNHWLDNTLERLQLGDTLIASGVDGLFHGWRASTDVIGKLCTGGAERWQAAVRQLQAPVKVNLAEILRARTFI
Ga0210390_100107778	3300021474	Soil	MNDMFYKTLRHLHRGDVLITSGVNGLIHSWQASTEVIGKLCTGHAERWQATIRKIQPPVNLAEILRTRTSCWSDT
Ga0224546_10334892	3300022515	Soil	NSLHHLQVGEALINGWQAPAAEVIGKLHAGAERWQAAIRQMQATVTATVNLVDILRARTF
Ga0242655_102942931	3300022532	Soil	MDHWLDNTLERLQLGETLIASGVDGLFHGWRASTDVIGKLCTGGAERWQAAVRQLQAPVKVNLAEILRARTFI
Ga0242665_102723951	3300022724	Soil	MSHWLDNTLERLQLGETLIASGVDGLFHGWHASTDVIGKLCTGGAERWQAAVRQLQAPVKVNLAEILRARTFI
Ga0224552_100000470	3300022850	Soil	MNHWLTHTVQHLQLGEALVAGGVDGLLRGWRAPGNLVGKLCTGAERWQAAIRDMPVTANLAEILRARTFR
Ga0209420_10261032	3300027648	Forest Soil	MSHWLDNTLQHLQLGEALIAGGVDGLFHGWQASADVLGKLCTGTDRWHALIRQMQTPVNFAEILRARALL
Ga0209333_11481612	3300027676	Forest Soil	MSHWFDNTLHHLQVGEALINGWHAPAAEVIGKLHAGAERWQAAIRQMQATVNATVNLVDILRARTFL
Ga0209208_103078281	3300027807	Host-Associated	MEHWLHDTWQHLQLGEALMAGGVESLLHGWQAPAADVIGKLCTGAERWQAAIREIHATVSLADILRARTPL
Ga0209656_103299281	3300027812	Bog Forest Soil	MNHALDNPLHQLQLGEALLASGVEKLFQSWQASSEVIGKLCAGGAERWQAAIRQMQAPLDLAEILRARTFL
Ga0209656_103454711	3300027812	Bog Forest Soil	RGDALITSGVNGLIHSWQASTEVIGKLCTGHAERWQATIRKIQAPVNFAEILRARTSCWSDT
Ga0209040_100374763	3300027824	Bog Forest Soil	VNHAFDSTLQHLHLGEALIASGVEGLYHTWQASTDIIGKLCAGGAERWQAAIRQFQAPVNLADILRARTFLRTPASP
Ga0209040_101413892	3300027824	Bog Forest Soil	MNHSLDNPFDQLQLGEALLASGVEKLFQSWQASSEVIGKLCAGGAERWQAAIRQMQAPVDLAEILRARTFLHPPR
Ga0209274_100347352	3300027853	Soil	MSHWLDNTLQHLHVGEALIAGGVEGLIHGWQAPAADVIGKLHAGAERWQAAIRQMQLTVNATVNLVDILRARTFL
Ga0209611_100584633	3300027860	Host-Associated	MEHWLHDTWQHLHLGEALVAGGVDSLLHGWQAPAANMIGKLCTGAERWQAAIREIHATVSLADILRARTLL
Ga0209068_100139533	3300027894	Watersheds	MNYWLNDTLQHLPLGEALIAGGVGGLVHGLKAQADAIGELCTGPERWQAAIRQIQAPFQATVNLAEILRART
Ga0209067_102070772	3300027898	Watersheds	MNDAFYQTLQHLHRGDALIATGVNGLVHGWQASTEVIGKLCTSHAERWQATIRKIQAPVNLAEILRARTSCWSDT
Ga0302144_100268422	3300028560	Bog	MGHWLDNTFQHLHLGEALIAGGVDGLLKGWHNPGDVIGKLCTGAERWQTAIRQIQVPVVNLAEILRARTLL
Ga0302267_104730692	3300028745	Bog	MSHWLDSTLNHLHLGEALVTGGVERLFEGWHSSAEVIGKLCTGAERWQAAIRAQMQAPVNVAEILRSRTFR
Ga0302267_104816501	3300028745	Bog	MSHWLDNTLQHLQVGEALIQGWQAPAADVIGRLHAGAERWQAAIRQMHATVNATVNLVDILRARTFL
Ga0302219_103296191	3300028747	Palsa	MSHWLDNTLQHLQVGEALIHGWHAPAADMIGKLHAGAERWQTAIRQMQATVTATANLVDILRARTLI
Ga0302228_101278102	3300028808	Palsa	MSHWLDNTLQHLQVGEALIAGGVEGLIHSWHAPAADMIGKLHAGAERWQTAIRQMQATVTATANLVDILRARTLI
Ga0302228_105306822	3300028808	Palsa	MSHWLDNTLQHLQLGEALIASGVDGLFHGWQASADVLGKLCTGTDRWHALIRQMQTPVNFAEILRARALL
Ga0302229_102397462	3300028879	Palsa	MSHWFDNTLHHLQVGEALINGWQAPAADVIGKLHAGAERWQAAIRQMQATVNATVNLVDILRARTFL
Ga0311327_101616992	3300029883	Bog	MSHWLESTLQHLQVGEALISGGVEGLWQGWHSPTSLIGEICTGAERWQAAIRSMSAPVNLAEILRARKFA
Ga0311371_100800007	3300029951	Palsa	MSHWLDNTLQHLQVGEALIHGWHAPAADMIGKLHAGAERWQTAIRQMQATVTATA
Ga0311342_111316231	3300029955	Bog	LQHLQVGEALIAGGVEGLVHSWHAPAAQVIDKLHAGADRWQAAIRQMQATVNATVNLVDILRSRTFL
Ga0311339_106544682	3300029999	Palsa	MSHWLDNTFQHLQLGEALIAGGVDGLFHGWQASADVLGKLCSGTDRWHALIRQMQTPVNFAD
Ga0302306_102850151	3300030043	Palsa	MSHWLDNTLQHLQVGEALIHGWHAPAADMIGKLHAGAERWQTAIRQMQATVTATANLVDILRA
Ga0311353_106093261	3300030399	Palsa	MSHWLDNTLQHLQVGEALIAGGVEGLIHSWHAPAADMIGKLHAGAERWQTAIRQMQA
Ga0302183_100744441	3300030509	Palsa	MSHWLDNTLQHLQVGEALIAGGVEGLIHSWHAPAADMIGKLHAGAERWQTAIRQMQATVTATANLVDILRA
Ga0302313_102815181	3300030693	Palsa	LGEALIAGGVDGLFHGWQASADVLGKLCTGTDRWHALIRQMQTPVNFAEILRARALL
Ga0265460_120535422	3300030740	Soil	MNRWIDNTLEHLRIGESLITGGVEELIHGWQQASSNVIGKLCTGAERWQAAIRQIQAPVNFADILRARTLL
Ga0265459_141130882	3300030741	Soil	LQAGEALIASGVEGLIHGWRTHVDVIDRIYTWAERWQAAIRQIQATATVNLVEILRARTF
Ga0265762_10152421	3300030760	Soil	MSHWLDNTLQHLQLGEALIASGVDGLFHGWQASTDVLGKLCTGTDRWHALIRQMQTPVNFAEILRARALL
Ga0302325_101266872	3300031234	Palsa	MSHWLDNTLQHLQLGEALIASGVDGLFHGWQASTDVLGKLCTGTDRWHALIRQMQTPVNFADILRARALL
Ga0302324_1017416142	3300031236	Palsa	TFQHLQLGEALIAGGVDGLFHGWQASADVLGKLCSGTDRWHALIRQMQTPVNFADILRARALL
Ga0302324_1027389492	3300031236	Palsa	MSHWLDNTLQHMHFGEVLIAGGVEGLFHGWQSPAADVIGKICTGAERWQAAIRQVQAPMNLAEILRARTLL
Ga0302140_106979772	3300031261	Bog	MSHWLDNTLQHLQVGEALIQGWQAPAADVIGRLHAGAERWQAAIRQMHATVNATVNLV
Ga0302326_113440782	3300031525	Palsa	MSHWLDNTLQHLQLGEALIAGGVDGLFHGWQASADVLGKLCSGTDRWHALIRQMQTPVNFADILRARALL
Ga0310686_1013638362	3300031708	Soil	MSHWIENTLQHLQVGEALIAGGVEGLFHGWQAPADVIGKICTGAERWQAVIRQMHSTVNLVEILRARTFV
Ga0310686_10258528017	3300031708	Soil	MNRSIDNTFGHLRIGEALIAGGVDGLIQGWQQASTNVIGMLCTGAERWQAAIRQIQAPVNFADILRARTLP
Ga0310686_1027648142	3300031708	Soil	MSHWLDNPLQHLQAGEALIASGVEGLIHGWRTHVDVIDRIYTGAERWQAAIRQIQATATVNLVEILRARTFV
Ga0310686_1034674152	3300031708	Soil	MSHWLDNTLQHLQVGEALIAGGVEGLIHGWQAPAADVIGKLHAGAERWQAAIRQMQVTVNLVDILRARTFL
Ga0310686_1068969633	3300031708	Soil	MSHWLDNTLQHLQVGEALIAGGVEGLFHGWQTPADVIGKIYTGAERWQAAIRQIQETATVNLVEILRARTFI
Ga0310686_1104982591	3300031708	Soil	MSHWLDNPLQRLQAGEALIASGVEDLIQGWRTHVDVIDRIYTGAERWQAAIRQIQATATVNLV
Ga0310686_1192603182	3300031708	Soil	MSHWLDNTLQHLQVGEALITGGVENLFRGWHASSTDVIGKLHAAGAERWQAAIRQMQATVNLVEVNLVEILRARTLG
Ga0302315_105638862	3300031837	Palsa	LQLGEALIAGGVDGLFHGWQASADVLGKLCTGTDRWHALIRQMQTPVNFAEILRARALL
Ga0326631_1173801	3300032072	Soil	MNSSIDNTFGHLRIGEALIAGGVDGLIQGWQQASTNVIGMLCTGAERWQAAIRQIQAPVNFADILRARTLP
Ga0311301_1000284954	3300032160	Peatlands Soil	MDHWLDNTWQHLQLGEALIASGVDGLVHGWQASTEALGKLCTGAERWQAAIRQVQATTVNFADILRARNLL
Ga0311301_100690796	3300032160	Peatlands Soil	MNHCLDNTWQHLQLGEALIAGGVDGLVHGWQASTEALDKLCTGAERWQAAIRQMQATTVNFADILRARSFL
Ga0311301_102029762	3300032160	Peatlands Soil	MNHALDSTLQQLPLGEALIASGVEGLFHTWQASTEVIGKLCAGGAERWQAAIRQFQAPVNLADILRARTFLRTLSSP
Ga0311301_125312441	3300032160	Peatlands Soil	GEALISSGVDGLFRGWQASAEVVGMVRTGANRWQAVIRQMQSSVNFADILRARAPL
Ga0348332_135386441	3300032515	Plant Litter	LDNTLQHLQLGEALIAGGVDGLFHGWQASADVLGKLCTGTDRWHALIRQMQAPVNFAEILRARALL
Ga0370515_0014614_2213_2386	3300034163	Untreated Peat Soil	MSHWLDNTLQHLQVGEALIHGWQAPAAERWQVAIRQMQATVNATVNLVDILRARTFL

Hidden Markov Model


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