Metagenome / Metatranscriptome Family F083322

Overview

Basic Information

• Family ID: F083322
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 113
• Average Sequence Length: 40 residues
• Representative Sequence: PDDRHFVVPRRGHGEAVRTYIGRIDEATARLRRHPRQPD
• Number of Associated Samples: 93
• Number of Associated Scaffolds: 113

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 0.00 %
• % of genes near scaffold ends (potentially truncated): 12.39 %
• % of genes from short scaffolds (< 2000 bps): 9.73 %
• Associated GOLD sequencing projects: 85
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (87.611 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (28.319 % of family members)
• Environment Ontology (ENVO): Unclassified (45.133 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (49.558 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 25.37%
  β-sheet: 0.00%
  Coil/Unstructured: 74.63%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF07681	DoxX	18.58
PF02148	zf-UBP	7.96
PF00210	Ferritin	6.19
PF07676	PD40	5.31
PF13462	Thioredoxin_4	4.42
PF07992	Pyr_redox_2	2.65
PF00144	Beta-lactamase	2.65
PF03740	PdxJ	1.77
PF13669	Glyoxalase_4	1.77
PF16542	PNKP_ligase	1.77
PF14094	DUF4272	1.77
PF06983	3-dmu-9_3-mt	1.77
PF00072	Response_reg	1.77
PF12867	DinB_2	0.88
PF08447	PAS_3	0.88
PF03699	UPF0182	0.88
PF07690	MFS_1	0.88
PF12840	HTH_20	0.88
PF02518	HATPase_c	0.88
PF10017	Methyltransf_33	0.88
PF00480	ROK	0.88
PF16536	PNKP-ligase_C	0.88
PF09365	DUF2461	0.88
PF13414	TPR_11	0.88
PF14522	Cytochrome_C7	0.88
PF01850	PIN	0.88
PF00005	ABC_tran	0.88
PF00027	cNMP_binding	0.88
PF15887	Peptidase_Mx	0.88
PF00903	Glyoxalase	0.88
PF03703	bPH_2	0.88
PF02065	Melibiase	0.88

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	18.58
COG4270	Uncharacterized membrane protein	Function unknown [S]	18.58
COG5207	Uncharacterized Zn-finger protein, UBP-type	General function prediction only [R]	7.96
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	2.65
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	2.65
COG2367	Beta-lactamase class A	Defense mechanisms [V]	2.65
COG0854	Pyridoxine 5'-phosphate synthase PdxJ	Coenzyme transport and metabolism [H]	1.77
COG1940	Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain	Transcription [K]	1.77
COG2764	Zn-dependent glyoxalase, PhnB family	Energy production and conversion [C]	1.77
COG3865	Glyoxalase superfamily enzyme, possible 3-demethylubiquinone-9 3-methyltransferase	General function prediction only [R]	1.77
COG1615	Uncharacterized membrane protein, UPF0182 family	Function unknown [S]	0.88
COG3345	Alpha-galactosidase	Carbohydrate transport and metabolism [G]	0.88
COG3402	Uncharacterized membrane protein YdbS, contains bPH2 (bacterial pleckstrin homology) domain	Function unknown [S]	0.88
COG3428	Uncharacterized membrane protein YdbT, contains bPH2 (bacterial pleckstrin homology) domain	Function unknown [S]	0.88

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.61 %
All Organisms	root	All Organisms	12.39 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.61 %
cellular organisms	root	All Organisms → cellular organisms	12.39 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.61 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	12.39 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.61 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	3.54 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.65 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.61 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	3.54 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.88 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.88 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.61 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	1.77 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.88 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.61 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	1.77 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.88 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Level 8

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.61 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	1.77 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.88 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Level 9

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.61 %
Gemmatirosa	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa	0.88 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.88 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Level 10

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.61 %
Gemmatirosa kalamazoonesis	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	0.88 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.88 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300005451|Ga0066681_10007240	All Organisms → cellular organisms → Bacteria	5242
3300009012|Ga0066710_100107573	All Organisms → cellular organisms → Bacteria	3755
3300010329|Ga0134111_10085144	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1196
3300010335|Ga0134063_10446683	All Organisms → cellular organisms → Bacteria → Acidobacteria	640
3300012200|Ga0137382_10258220	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1208
3300012208|Ga0137376_10365213	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1253
3300012349|Ga0137387_10321800	All Organisms → cellular organisms → Bacteria	1119
3300012350|Ga0137372_10392078	All Organisms → cellular organisms → Bacteria	1053
3300012930|Ga0137407_10410923	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	1254
3300018084|Ga0184629_10172540	All Organisms → cellular organisms → Bacteria	1107
3300026328|Ga0209802_1251429	All Organisms → cellular organisms → Bacteria	606
3300026524|Ga0209690_1304036	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	506
3300026551|Ga0209648_10049992	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	3585
3300031720|Ga0307469_10166560	All Organisms → cellular organisms → Bacteria	1674

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.15%
Host-Associated	Host-Associated	8.85%

Class

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.38%
Plants	Host-Associated → Plants	8.85%
Aquatic	Environmental → Aquatic	1.77%

Category

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	89.38%
Rhizosphere	Host-Associated → Plants → Rhizosphere	8.85%
Sediment	Environmental → Aquatic → Sediment	1.77%

Type

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	82.30%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.96%
Loam	Environmental → Terrestrial → Soil → Loam	6.19%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.77%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.89%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.89%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	43.36%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	33.63%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.19%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.31%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.77%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.89%

Habitat

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	28.32%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	17.70%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	15.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	11.50%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.19%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.31%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.54%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.65%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.65%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.89%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300002557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm	Environmental
3300002560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm	Environmental
3300002562	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental
3300002912	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm	Environmental
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental
3300012372	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_0_2 metaT (Metagenome Metatranscriptome)	Environmental
3300012380	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_0_2 metaT (Metagenome Metatranscriptome)	Environmental
3300012406	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_4_1 metaT (Metagenome Metatranscriptome)	Environmental
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental
3300015052	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)	Environmental
3300017654	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG	Environmental
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental
3300026296	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)	Environmental
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental
3300026300	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm (SPAdes)	Environmental
3300026307	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123 (SPAdes)	Environmental
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental
3300026327	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)	Environmental
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental
3300026524	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)	Environmental
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25381J37097_10131581	3300002557	Grasslands Soil	SRPDDRHFVVPRRAQGEALRAYIRRIDEATAKLGRHPRQPDP*
JGI25383J37093_101606261	3300002560	Grasslands Soil	LKSSRPDDRHFVVPRRAHGEAVRTYIGRIDEATAQLRRHPRQPD*
JGI25382J37095_100743293	3300002562	Grasslands Soil	PDDRHFVVPRRAHGEAVRKYIGRIDEATTQLRRHPRQRD*
JGI25382J43887_102158093	3300002908	Grasslands Soil	PDDRHFVVPRRGHGEAVRTYIGRIDEATARLRRHPRQPD*
JGI25386J43895_100717482	3300002912	Grasslands Soil	PDDAHFVVPRRDHGEAVRAYIGRIDDATARLRRHPRHTD*
Ga0066674_100408851	3300005166	Soil	TQPDDRHFVLPRREHGESIRTYVSRIDAAASALRKHPRRPD*
Ga0066674_101008614	3300005166	Soil	KSAQPDDRHFVVPRRGHGEAVRAYIGRIDEATARLRRHPRQPD*
Ga0070683_1018852791	3300005329	Corn Rhizosphere	DLQSSRPDDQHFVLPRRQAGEAIRAYIVRVEEATVRLRDHPRRAD*
Ga0066682_109518932	3300005450	Soil	PDDRHFVVPRRARGEALRTYIGRIDEATARLRAHPRQPD*
Ga0066681_100072409	3300005451	Soil	LKSAQPDDRHFVLPRRESGEAVRAYIVRIDTATIALRKHKRGTD*
Ga0070681_100327058	3300005458	Corn Rhizosphere	SRPDDQHFVLPRRQAGEAIRAYIVRVEEATVRLRDHPRRAD*
Ga0066697_101742151	3300005540	Soil	HFVVPRRARGEAVHSYIVRIVDAAARLGDHPRHPD*
Ga0070704_1006071971	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	DDRHFVLPRRDHAELIRAYIGRIRAATSGLRKHPRHLDS*
Ga0066692_106681191	3300005555	Soil	DDRHFVVPRRGPGEAVRADIGRIDEATARLRRHPRQPD*
Ga0066670_108443361	3300005560	Soil	PDDRHFVVPRRAQGEAVRAYIRRIDEATAKLGRHPRQPEP*
Ga0066694_103406521	3300005574	Soil	SHFVVPRRGHGETVRAYVVRIDEAAARLRGHPRKPD*
Ga0066702_108411951	3300005575	Soil	KSAQPDDRHFVVPRRAHAEPVRTYIRRIDEATAQLHRHPRQPDR*
Ga0066654_101058641	3300005587	Soil	RPDDSHFVVPRRAPGEGVRAYIGRIDAATAGLRRHPRQRD*
Ga0070715_102134053	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	FVLPRRVPGESVRAYINRIDAAAAALRKHPRRPD*
Ga0066658_101466481	3300006794	Soil	DRHFVVPRRARGETVRAYLVRIDEAAAELRRHPRQPD*
Ga0066665_106596561	3300006796	Soil	LKSAEPDDRHFVVPRRAHGEAVRKYIGRIDEATAQLRRHPRQRD*
Ga0066665_111559381	3300006796	Soil	DRHFVLPRREHGESVPTYVKRIDAATAGLRRHPRRPD*
Ga0066659_116082422	3300006797	Soil	PDDRHFVLPRRESGEAVRDYIARIDAATGALRKHKRGTD*
Ga0075434_1010655851	3300006871	Populus Rhizosphere	DDPHFVVPRRHPGESLRSYIQRIDTATRDLQRHPVRE*
Ga0075426_100853511	3300006903	Populus Rhizosphere	EPDDRHFVVPRREPGESIRAYVGRIDDATVQLRRHPRPPD*
Ga0075424_1000557981	3300006904	Populus Rhizosphere	FVVPRRGHGETVRAYVVRIDEAAGRLRRHPRQTD*
Ga0075435_1006650251	3300007076	Populus Rhizosphere	PDDRHFVLPRRAHAEPIRAYIGRISAATSGLKKHPRHTDS*
Ga0099793_101228461	3300007258	Vadose Zone Soil	AHYVVPRREHGEVIRAYIGRIDEATASLRRHPRRPD*
Ga0066710_1001075736	3300009012	Grasslands Soil	DLKSVQPDDRHFVVPRRAHAEAVRVYITRIDAATARLRTHPRRTD
Ga0066710_1044804411	3300009012	Grasslands Soil	SSRPDDRHFVVPRRARGEAVRKYIGRIDEATAQLRRHPPQRD
Ga0099829_102237181	3300009038	Vadose Zone Soil	HFVLPRRTRGEAIRAYIGRIDEATVRLRRHPRQRD*
Ga0099827_101169891	3300009090	Vadose Zone Soil	KSSQPDDRHFVVPRRARGEAVRAYIVRIDAAAGELRRHPRQPD*
Ga0111539_110747543	3300009094	Populus Rhizosphere	RPDDRHFVLPRRGKDESARAYMVRIDEAAMALRRHPRHPG*
Ga0075423_104370752	3300009162	Populus Rhizosphere	PDDRHFVLPRRAHAETIRAYVVRIDDATAGLRRHPRKPD*
Ga0075423_118480281	3300009162	Populus Rhizosphere	HFVLPRRAPGEAVRAYISRIDAATSALRKHPRKPD*
Ga0134084_102952491	3300010322	Grasslands Soil	FVVPRRAHGEAMRTYIARIDEAAARLRRHPRRPV*
Ga0134086_103825811	3300010323	Grasslands Soil	HFVLPRRAHAEAVRAYIGRIDEATARLRRHPRQPD*
Ga0134086_104304992	3300010323	Grasslands Soil	FVVPRRGAREPVRAYIGRIDEAAALLRRHPPQPD*
Ga0134065_105149772	3300010326	Grasslands Soil	LKSAQPDDRHFVLPRRESGEAVRDYIARIDAATGALRKHKRGTD*
Ga0134111_100851443	3300010329	Grasslands Soil	DDLKSAQPDDRHFVLPRRESGEAVRDYIARIDAATGALRKHKRGTD*
Ga0134080_105681211	3300010333	Grasslands Soil	SSRPDDRHFVVPRRAHGEVVRAYITRIDEATAQLRRHPRQPD*
Ga0134063_104466833	3300010335	Grasslands Soil	DLKSAQPDDRHFVVPRRGHGEAVRTYIGRIDEATARLHRHPRQPD*
Ga0134125_130136761	3300010371	Terrestrial Soil	QPDDSHFVVPRRGHGETVRAYVIRIDEAAARLRGHPRKPD*
Ga0134128_127503271	3300010373	Terrestrial Soil	SSRPDDQHFVLPRRQAGEAIRAYIVRVEEATVRLRDHPRRAD*
Ga0134123_119110731	3300010403	Terrestrial Soil	RHFVLPRRAHAETIRAYIVRIDEATAGLRRHPRKPD*
Ga0137392_102884091	3300011269	Vadose Zone Soil	SSQPDDQHFVVPRRGPGETVRAYVVRIDEAAGRLRRHPRQPD*
Ga0137389_108529861	3300012096	Vadose Zone Soil	DDPHFVLPRRARGEAIRAYIGRIDEATGNLRRHPRQRD*
Ga0137388_100285728	3300012189	Vadose Zone Soil	HFVLPRREHGESIRTYIIRIDEAAAGLRRHPRRPD*
Ga0137364_113952472	3300012198	Vadose Zone Soil	PDDRHFVLPRRAHAEAVRAYIGRIDEATARLRRHPRQPD*
Ga0137382_100504421	3300012200	Vadose Zone Soil	HFVVPRRGARETVRAYIGRIDEAAALLRRHPPQPD*
Ga0137382_102582203	3300012200	Vadose Zone Soil	VDDLKSEQPDDRHFVLPRRERGEATRAYIIRIDNAADALRRHPRLPD*
Ga0137365_104749712	3300012201	Vadose Zone Soil	DDSHFVVPRRGHGETVRAYVVRIDEAAARLRGHPRKPD*
Ga0137365_109024441	3300012201	Vadose Zone Soil	SSQPDDSHFVVPRRGHGETVRAYVVRIDEAAARLRGHPPKPD*
Ga0137380_116354222	3300012206	Vadose Zone Soil	HFVVPRRGHGETVRAYVVRIDEAAARLRGHPRKPD*
Ga0137376_103652131	3300012208	Vadose Zone Soil	DSHFVVPRRGHGETVRAYVVRIDEAAARLRGHPRKPD*
Ga0137376_105322194	3300012208	Vadose Zone Soil	HFVVPRRARGEALRTYIGRIDEATARLRAHPRQPD*
Ga0137379_112730352	3300012209	Vadose Zone Soil	LKSAQPDDRHFVVPRRAHGEAVRIYINRIDAATAGLRTHPRRTD*
Ga0137377_108293873	3300012211	Vadose Zone Soil	KSSQPDDSHFVVPRRGHGETVRAYVVRIDEAAARLRGHPRKPD*
Ga0137387_103218001	3300012349	Vadose Zone Soil	DLKSAQPDDRHFVVPRRGHGESVRAYIGRIDEATARLRRHPRQPD*
Ga0137387_105301471	3300012349	Vadose Zone Soil	SSQPDDSHFVVPRRGHGETVRAYVVRIDEAAARLRGHPPKPY*
Ga0137387_106942491	3300012349	Vadose Zone Soil	PDDQHFVVPRRAHGEAMRTYIARIDEATARLRRHPRRPD*
Ga0137387_111864371	3300012349	Vadose Zone Soil	SRPDDQHFVVPRRTHAEPVRTYIGRIDEATARLRSHPRHTD*
Ga0137372_103920783	3300012350	Vadose Zone Soil	DDLKSAQPDDRHFVLPRRAHAEAVRAYIGRIDEATARLRRHPRQPD*
Ga0137369_104916431	3300012355	Vadose Zone Soil	SRPDDRHFVLPRRAQAESARAYMVRIDAATEALQRHPRHPG*
Ga0137385_114398581	3300012359	Vadose Zone Soil	PDDHHFVVPRRTHAEPVRTYIGRIDEATARLRTHPRHTA*
Ga0134037_10260551	3300012372	Grasslands Soil	HYVVPRRALGEGTRAYIARIDAATAGLRRHPRRPD*
Ga0134047_10424651	3300012380	Grasslands Soil	RSSRPDDPHYVVPRRQHGEVIRAYIGRIDEATASLRRHPRRPD*
Ga0134053_11410872	3300012406	Grasslands Soil	YVVPRRAHGEGIRAYIGRIDEATAGLRRHPPRPD*
Ga0137398_108327211	3300012683	Vadose Zone Soil	KSAQPDDRHFVLPRREHGESIRTYVSRIDAAASALRKHPRRPD*
Ga0137397_105715091	3300012685	Vadose Zone Soil	LKSSQPDDSHFVVPRRGHGETVRAYVARIDEAAARLRGHPRKPD*
Ga0137396_107420803	3300012918	Vadose Zone Soil	RHFVVPRRAHAEAVRTYIGRIDEATARLRRHPRQPDR*
Ga0137394_111584332	3300012922	Vadose Zone Soil	HFVVPRRGHGETVRAYVARIDEAAARLRGHPRKPD*
Ga0137404_102976831	3300012929	Vadose Zone Soil	HFVVPRRGNGETVRAYVARIDEAAARLRGHPRKPD*
Ga0137407_104109233	3300012930	Vadose Zone Soil	DDLKSVQPDDAHFVLPRRSTGEAVRAYIGRIVAAMAKLRDHPRKPD*
Ga0137410_119717982	3300012944	Vadose Zone Soil	FVLPRRAQAESARAYMVRIDAATEALRQHPRHPG*
Ga0157370_109649102	3300013104	Corn Rhizosphere	QHFVLPRRQAGEAIRAYIVRVEEATVRLRDHPRRAD*
Ga0134079_104203991	3300014166	Grasslands Soil	LKSSRPDDRHFVLPRRGNAESARAYMVRIDGATEALRRHPRHPG*
Ga0137411_12481231	3300015052	Vadose Zone Soil	VPRRGHGETVRAYDGETVRAYVARIDEAAARLRGHPRKPD*
Ga0134069_10222911	3300017654	Grasslands Soil	SSRPDDRHFVVPRRGPAEAVRKYIVRIDAAAAELRRHPRQPD
Ga0134069_10360943	3300017654	Grasslands Soil	PDDRHFVLPRREHGESIRTYVSRIDAAASALRKHPRRPD
Ga0187778_105094721	3300017961	Tropical Peatland	KSAAPDDPHFVLPRRKHDEAIRAYIARIDAATTHLRRHQRRAD
Ga0184608_104129262	3300018028	Groundwater Sediment	VQPDDRHFVLPRRNHGEAIRPYIIRIDAATSGLRKHPRRPD
Ga0184629_101725402	3300018084	Groundwater Sediment	DLKSAQPDDPHFVVPRRAHAEAIRTYIVRIDEATAGLRRHPRHTD
Ga0066667_118355482	3300018433	Grasslands Soil	RPDDRHFVVPRRAHGEAVRTYIVRIDEATTQLRRHPPQPD
Ga0215015_103693991	3300021046	Soil	PDDPHFVLPRRTRGETVRAYIARIDEATARLRKHPRRPD
Ga0207653_103254772	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	VDDLKSSRPDDRHFVLPRRGKDESARAYLVRIDEAAMALRRHPRHPG
Ga0207685_102351161	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	QPDDRHFVLPRRVPGESVRAYINRIDAAAAALRKHPRRPD
Ga0207707_100311661	3300025912	Corn Rhizosphere	PDDQHFVLPRRQAGEAIRAYIVRVEEATVRLRDHPRRAD
Ga0207695_100449779	3300025913	Corn Rhizosphere	QSSRPDDQHFVLPRRQAGEAIRAYIVRVEEATVRLRDHPRRAD
Ga0207657_113168522	3300025919	Corn Rhizosphere	DLQSSRPDDQHFVLPRRQAGEAIRAYIVRVEEATVRLRDHPRRAD
Ga0209438_10092948	3300026285	Grasslands Soil	DDRHFVLPRRGKAESARAYIVRIDAATEALRQHPRHPG
Ga0209235_10561711	3300026296	Grasslands Soil	SRPDDRHFVVPRRARGEAVRAYIGRIDEATAQLRRHPRQPD
Ga0209235_11299031	3300026296	Grasslands Soil	RHFVVPRRARGEAVRAYMVRIDEAAAELRRHPRQPD
Ga0209235_12203541	3300026296	Grasslands Soil	DDRHFVVPRRAHGEAVRTYIGRIDEATAQLRRHPRQPD
Ga0209237_10918433	3300026297	Grasslands Soil	RHFVVPRRAHGEAVRTYIGRIDEATAQLRRHPRQPD
Ga0209237_11812471	3300026297	Grasslands Soil	KSSQPDDSHFVVPRRGHGETVRAYVVRIDEAAARLRGHPRKPD
Ga0209027_11636591	3300026300	Grasslands Soil	RHFVVPRRAQGEAVRAYIRRIDEATAKLGRHPRQPEP
Ga0209469_11155691	3300026307	Soil	RHFVVPRRGPAEAVRKYIVRIDAAAAELRRHPRQPD
Ga0209801_12840861	3300026326	Soil	PHFVLPRRAQGERIRAYTARIDAATAGLGRHPRQPD
Ga0209266_11129354	3300026327	Soil	LKSAEPDDRHFVVPRRGHGEAVRTYIGRIDEATARLRRHPRQPD
Ga0209802_12514291	3300026328	Soil	LKSSRPDDRHFVVPRRAPGEAVGAYIGRIDAATAGLRRHPRRPD
Ga0209690_13040362	3300026524	Soil	DLKSAKPDDRHFVVPRRAHGEAVRKYIGRIDEATAQLRRHPRQRD
Ga0209161_100373841	3300026548	Soil	QHFVVPRRAHGEAMRTYIARIDEATARLRRHPRRPD
Ga0209648_100499926	3300026551	Grasslands Soil	RHFVVPRRTAGEAIRAYIGRIDEATARLRRHAPRPD
Ga0209648_105147913	3300026551	Grasslands Soil	SQPDDPHFVLPRRARGDTVRAYIGRIDEATARLRKHPRQRD
Ga0209648_105162642	3300026551	Grasslands Soil	RHFVVPQRARGEAVRAYIVRIDEAAAGLHRHPRRPD
Ga0209180_104047972	3300027846	Vadose Zone Soil	DQHFVVPRRGPGETVRAYVVRIDEAAGRLQRHPRQPD
Ga0307469_101665601	3300031720	Hardwood Forest Soil	DDLKSSQPDDRHFVLPRRAPGEAVRAYISRIDAATSALRKHPRKPD
Ga0307469_101939993	3300031720	Hardwood Forest Soil	PDDRHFVLPRRVPGESVRAYINRIDAAAAALRKHPRRPD
Ga0307469_111434151	3300031720	Hardwood Forest Soil	PDDRHFVVPRRGHGETVRAYVVRIDEAAARLRGHPRKPD
Ga0307469_122467201	3300031720	Hardwood Forest Soil	LQSSRPDDRHFVMPRRAHGEAVRAYIGRIDEATAQLRRHPRQPD
Ga0307468_1017024992	3300031740	Hardwood Forest Soil	RHFVVPRRGHGETVRAYVVRIDEAAARLRGHPRKPD
Ga0307473_111110922	3300031820	Hardwood Forest Soil	SAQPDDRHFVVPRRAPAEAVRTYIGRIDEATARLRRHPRQPDR