Metagenome / Metatranscriptome Family F083312

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F083312
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	58 residues
Representative Sequence	MASVVVNGIVSEGPGAESVPDTKPQPELVIGLLAAPGPASELTESLVGEIADRLAGQLP
Number of Associated Samples	93
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	12.39 %
% of genes near scaffold ends (potentially truncated)	99.12 %
% of genes from short scaffolds (< 2000 bps)	86.73 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (61.062 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (13.274 % of family members)
Environment Ontology (ENVO)	Unclassified (25.664 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (55.752 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 30.51% β-sheet: 8.47% Coil/Unstructured: 61.02%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF07724	AAA_2	9.73
PF04972	BON	7.96
PF00011	HSP20	5.31
PF01654	Cyt_bd_oxida_I	5.31
PF00248	Aldo_ket_red	2.65
PF01569	PAP2	1.77
PF13466	STAS_2	1.77
PF01740	STAS	1.77
PF01726	LexA_DNA_bind	1.77
PF03861	ANTAR	0.88
PF01230	HIT	0.88
PF01381	HTH_3	0.88
PF00406	ADK	0.88
PF01053	Cys_Met_Meta_PP	0.88
PF11535	Calci_bind_CcbP	0.88
PF00781	DAGK_cat	0.88
PF12697	Abhydrolase_6	0.88
PF14525	AraC_binding_2	0.88
PF11387	DUF2795	0.88
PF00085	Thioredoxin	0.88
PF06897	DUF1269	0.88
PF00067	p450	0.88
PF00005	ABC_tran	0.88
PF08327	AHSA1	0.88
PF00012	HSP70	0.88
PF02371	Transposase_20	0.88
PF03681	Obsolete Pfam Family	0.88
PF14572	Pribosyl_synth	0.88
PF00196	GerE	0.88
PF00294	PfkB	0.88
PF03976	PPK2	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	5.31
COG1271	Cytochrome bd-type quinol oxidase, subunit 1	Energy production and conversion [C]	5.31
COG1597	Phosphatidylglycerol kinase, diacylglycerol kinase family	Lipid transport and metabolism [I]	1.77
COG4803	Uncharacterized membrane protein	Function unknown [S]	0.88
COG4100	Cystathionine beta-lyase family protein involved in aluminum resistance	Inorganic ion transport and metabolism [P]	0.88
COG3707	Two-component response regulator, AmiR/NasT family, consists of REC and RNA-binding antiterminator (ANTAR) domains	Transcription [K]	0.88
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.88
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	0.88
COG2326	Polyphosphate kinase 2, PPK2 family	Energy production and conversion [C]	0.88
COG2124	Cytochrome P450	Defense mechanisms [V]	0.88
COG2008	Threonine aldolase	Amino acid transport and metabolism [E]	0.88
COG1982	Arginine/lysine/ornithine decarboxylase	Amino acid transport and metabolism [E]	0.88
COG1921	Seryl-tRNA(Sec) selenium transferase	Translation, ribosomal structure and biogenesis [J]	0.88
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	0.88
COG0563	Adenylate kinase or related kinase	Nucleotide transport and metabolism [F]	0.88
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	0.88
COG0443	Molecular chaperone DnaK (HSP70)	Posttranslational modification, protein turnover, chaperones [O]	0.88
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	0.88
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	0.88
COG0156	7-keto-8-aminopelargonate synthetase or related enzyme	Coenzyme transport and metabolism [H]	0.88
COG0075	Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucG	Amino acid transport and metabolism [E]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	61.06 %
Unclassified	root	N/A	38.94 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	61.06 %
Unclassified	root	N/A	38.94 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	61.06 %
Unclassified	root	N/A	38.94 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	51.33 %
Unclassified	root	N/A	38.94 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	51.33 %
Unclassified	root	N/A	38.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.94 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	32.74 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	1.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.94 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	6.19 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	2.65 %
Acidimicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	1.77 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.88 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	0.88 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.94 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	6.19 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	2.65 %
Acidimicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae	1.77 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	0.88 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.88 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.94 %
Geodermatophilus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus	5.31 %
Aciditerrimonas	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Aciditerrimonas	1.77 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.88 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.88 %
Actinoplanes	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes	0.88 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.94 %
Geodermatophilus ruber	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus ruber	5.31 %
Aciditerrimonas ferrireducens	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Aciditerrimonas → Aciditerrimonas ferrireducens	1.77 %
Frankia discariae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → Frankia discariae	0.88 %
Actinoplanes awajinensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes awajinensis	0.88 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.88 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459002\|FZY7DQ102GYS0Z	Not Available	523	Open in IMG/M
3300001991\|JGI24743J22301_10086414	Not Available	665	Open in IMG/M
3300002914\|JGI25617J43924_10305901	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	548	Open in IMG/M
3300003505\|JGIcombinedJ51221_10470589	Not Available	507	Open in IMG/M
3300004091\|Ga0062387_101342021	Not Available	567	Open in IMG/M
3300004092\|Ga0062389_104388288	Not Available	531	Open in IMG/M
3300005333\|Ga0070677_10657718	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	586	Open in IMG/M
3300005434\|Ga0070709_10055073	All Organisms → cellular organisms → Bacteria	2510	Open in IMG/M
3300005434\|Ga0070709_10620276	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	834	Open in IMG/M
3300005434\|Ga0070709_10712769	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	781	Open in IMG/M
3300005435\|Ga0070714_100226595	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1720	Open in IMG/M
3300005435\|Ga0070714_101465932	All Organisms → cellular organisms → Bacteria	666	Open in IMG/M
3300005435\|Ga0070714_101548672	Not Available	647	Open in IMG/M
3300005471\|Ga0070698_100974627	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	795	Open in IMG/M
3300005537\|Ga0070730_10780688	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300005602\|Ga0070762_10157671	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → Frankia discariae	1362	Open in IMG/M
3300005610\|Ga0070763_10129946	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1298	Open in IMG/M
3300006028\|Ga0070717_10371488	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1281	Open in IMG/M
3300006028\|Ga0070717_11570443	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	596	Open in IMG/M
3300006163\|Ga0070715_10420553	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	747	Open in IMG/M
3300006163\|Ga0070715_10451727	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	726	Open in IMG/M
3300006175\|Ga0070712_101296863	Not Available	634	Open in IMG/M
3300006755\|Ga0079222_10249182	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1115	Open in IMG/M
3300006804\|Ga0079221_10731735	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	695	Open in IMG/M
3300006806\|Ga0079220_11775222	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	542	Open in IMG/M
3300006847\|Ga0075431_101927359	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus ruber	546	Open in IMG/M
3300006852\|Ga0075433_11720796	Not Available	540	Open in IMG/M
3300006914\|Ga0075436_100905673	All Organisms → cellular organisms → Bacteria	660	Open in IMG/M
3300007076\|Ga0075435_100238673	All Organisms → cellular organisms → Bacteria	1545	Open in IMG/M
3300009093\|Ga0105240_10403357	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1539	Open in IMG/M
3300009098\|Ga0105245_10190187	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1966	Open in IMG/M
3300009520\|Ga0116214_1012437	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3011	Open in IMG/M
3300009522\|Ga0116218_1003063	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	8846	Open in IMG/M
3300009523\|Ga0116221_1433780	Not Available	573	Open in IMG/M
3300009683\|Ga0116224_10003733	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	8428	Open in IMG/M
3300009698\|Ga0116216_10126512	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes awajinensis	1572	Open in IMG/M
3300009698\|Ga0116216_10462785	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	768	Open in IMG/M
3300009824\|Ga0116219_10019356	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4218	Open in IMG/M
3300010373\|Ga0134128_10330955	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1703	Open in IMG/M
3300010373\|Ga0134128_11522970	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	736	Open in IMG/M
3300010379\|Ga0136449_101205046	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1192	Open in IMG/M
3300010379\|Ga0136449_102167562	Not Available	812	Open in IMG/M
3300010379\|Ga0136449_104631464	Not Available	504	Open in IMG/M
3300010396\|Ga0134126_11108571	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Aciditerrimonas → Aciditerrimonas ferrireducens	883	Open in IMG/M
3300010865\|Ga0126346_1263769	Not Available	532	Open in IMG/M
3300010937\|Ga0137776_1260596	Not Available	742	Open in IMG/M
3300012203\|Ga0137399_10454310	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1072	Open in IMG/M
3300014969\|Ga0157376_10166355	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2004	Open in IMG/M
3300017821\|Ga0187812_1102960	Not Available	932	Open in IMG/M
3300017924\|Ga0187820_1268359	Not Available	553	Open in IMG/M
3300017926\|Ga0187807_1017153	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2231	Open in IMG/M
3300017995\|Ga0187816_10529500	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	531	Open in IMG/M
3300020000\|Ga0193692_1081696	Not Available	704	Open in IMG/M
3300020579\|Ga0210407_11053764	Not Available	618	Open in IMG/M
3300021170\|Ga0210400_11480593	Not Available	539	Open in IMG/M
3300021178\|Ga0210408_11415292	Not Available	523	Open in IMG/M
3300021181\|Ga0210388_11394749	Not Available	588	Open in IMG/M
3300021403\|Ga0210397_10677568	Not Available	791	Open in IMG/M
3300021403\|Ga0210397_10813227	Not Available	722	Open in IMG/M
3300021403\|Ga0210397_11273217	Not Available	571	Open in IMG/M
3300021405\|Ga0210387_11592257	Not Available	556	Open in IMG/M
3300021406\|Ga0210386_10589204	Not Available	960	Open in IMG/M
3300021433\|Ga0210391_10141449	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1894	Open in IMG/M
3300021475\|Ga0210392_10043382	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2727	Open in IMG/M
3300021478\|Ga0210402_11207422	Not Available	683	Open in IMG/M
3300024288\|Ga0179589_10307299	Not Available	714	Open in IMG/M
3300025898\|Ga0207692_10695055	All Organisms → cellular organisms → Bacteria	660	Open in IMG/M
3300025905\|Ga0207685_10107547	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1204	Open in IMG/M
3300025905\|Ga0207685_10369834	Not Available	728	Open in IMG/M
3300025906\|Ga0207699_10827159	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus ruber	681	Open in IMG/M
3300025910\|Ga0207684_11142846	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	647	Open in IMG/M
3300025915\|Ga0207693_10795778	Not Available	729	Open in IMG/M
3300025961\|Ga0207712_11581306	Not Available	588	Open in IMG/M
3300026317\|Ga0209154_1294018	Not Available	537	Open in IMG/M
3300026490\|Ga0257153_1030056	Not Available	1119	Open in IMG/M
3300026999\|Ga0207949_1007661	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	973	Open in IMG/M
3300027096\|Ga0208099_1060271	Not Available	537	Open in IMG/M
3300027110\|Ga0208488_1026591	Not Available	1088	Open in IMG/M
3300027161\|Ga0208368_110235	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus ruber	535	Open in IMG/M
3300027297\|Ga0208241_1050560	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	658	Open in IMG/M
3300027497\|Ga0208199_1007146	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2736	Open in IMG/M
3300027570\|Ga0208043_1158253	Not Available	588	Open in IMG/M
3300027590\|Ga0209116_1056270	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	852	Open in IMG/M
3300027696\|Ga0208696_1001341	All Organisms → cellular organisms → Bacteria	14722	Open in IMG/M
3300027765\|Ga0209073_10349933	Not Available	596	Open in IMG/M
3300027855\|Ga0209693_10008651	All Organisms → cellular organisms → Bacteria	4726	Open in IMG/M
3300027855\|Ga0209693_10043611	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	2205	Open in IMG/M
3300027855\|Ga0209693_10185378	All Organisms → cellular organisms → Bacteria	1025	Open in IMG/M
3300027884\|Ga0209275_10237481	Not Available	996	Open in IMG/M
3300027884\|Ga0209275_10398396	Not Available	776	Open in IMG/M
3300027889\|Ga0209380_10020993	Not Available	3694	Open in IMG/M
3300027889\|Ga0209380_10127347	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1483	Open in IMG/M
3300027889\|Ga0209380_10216165	Not Available	1126	Open in IMG/M
3300027908\|Ga0209006_10609013	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus ruber	902	Open in IMG/M
3300027908\|Ga0209006_11137301	All Organisms → cellular organisms → Bacteria	614	Open in IMG/M
3300028781\|Ga0302223_10222756	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	622	Open in IMG/M
3300028877\|Ga0302235_10141145	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus ruber	1078	Open in IMG/M
3300030494\|Ga0310037_10011237	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4363	Open in IMG/M
3300030707\|Ga0310038_10021594	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4003	Open in IMG/M
3300031236\|Ga0302324_101121109	All Organisms → cellular organisms → Bacteria	1056	Open in IMG/M
3300031720\|Ga0307469_10214682	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1515	Open in IMG/M
3300031753\|Ga0307477_10571705	Not Available	764	Open in IMG/M
3300031820\|Ga0307473_11225325	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	559	Open in IMG/M
3300031858\|Ga0310892_10898388	Not Available	620	Open in IMG/M
3300031962\|Ga0307479_11788287	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus ruber	567	Open in IMG/M
3300032770\|Ga0335085_12106595	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	569	Open in IMG/M
3300032805\|Ga0335078_10538856	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1489	Open in IMG/M
3300032805\|Ga0335078_11254838	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	850	Open in IMG/M
3300032893\|Ga0335069_11996769	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Aciditerrimonas → Aciditerrimonas ferrireducens	611	Open in IMG/M
3300032896\|Ga0335075_10474463	Not Available	1292	Open in IMG/M
3300032898\|Ga0335072_11349737	Not Available	620	Open in IMG/M
3300033158\|Ga0335077_10641618	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1102	Open in IMG/M
3300033412\|Ga0310810_11081305	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	671	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.15%
Host-Associated	Host-Associated	8.85%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	84.96%
Plants	Host-Associated → Plants	8.85%
Aquatic	Environmental → Aquatic	6.19%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	82.30%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.96%
Freshwater	Environmental → Aquatic → Freshwater	5.31%
Peat	Environmental → Terrestrial → Peat	2.65%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.89%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	43.36%
Loam	Environmental → Terrestrial → Soil → Loam	32.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.08%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.19%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	5.31%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.65%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.89%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.89%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.24%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	16.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	15.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	15.04%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.08%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.19%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.54%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.54%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.65%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.65%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.77%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment	0.89%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	13.27%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	13.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.50%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	8.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	7.96%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	6.19%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.54%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.54%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.54%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.54%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	2.65%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	2.65%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.77%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.77%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment	0.89%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.89%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.89%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459002	Grass soil microbial communities from Rothamsted Park, UK - March 2009 direct MP BIO 1O1 lysis 0-21 cm	Environmental	Open in IMG/M
3300001991	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2	Host-Associated	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010865	Boreal forest soil eukaryotic communities from Alaska, USA - C3-3 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010937	Fumarole sediment microbial communities, Furnas, Sao Miguel, Azores. Combined Assembly of Gp0156138, Gp0156139	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300017821	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2	Environmental	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300017926	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300020000	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3a1	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026317	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)	Environmental	Open in IMG/M
3300026490	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-A	Environmental	Open in IMG/M
3300026999	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF044 (SPAdes)	Environmental	Open in IMG/M
3300027096	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF043 (SPAdes)	Environmental	Open in IMG/M
3300027110	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF001 (SPAdes)	Environmental	Open in IMG/M
3300027161	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF032 (SPAdes)	Environmental	Open in IMG/M
3300027297	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF047 (SPAdes)	Environmental	Open in IMG/M
3300027497	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG (SPAdes)	Environmental	Open in IMG/M
3300027570	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG (SPAdes)	Environmental	Open in IMG/M
3300027590	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O1 (SPAdes)	Environmental	Open in IMG/M
3300027696	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028781	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_3	Environmental	Open in IMG/M
3300028877	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_3	Environmental	Open in IMG/M
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental	Open in IMG/M
3300030707	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
E1_01974820	2170459002	Grass Soil	MASVVVNGIVAEGPGAESVPDTKPRPELVIGLLAAPGPASELTESLVGEIAD
JGI24743J22301_100864143	3300001991	Corn, Switchgrass And Miscanthus Rhizosphere	MASVVVNGIVAESPGAESVPDTKPRLELVIGLLAAPGPASELTESLVGEIADRL
JGI25617J43924_103059012	3300002914	Grasslands Soil	MASVVVNGIVTEGPGAESAPDTKPQPELVIGLLAAPGPASELTESLVGEIADRLAGQL
JGIcombinedJ51221_104705891	3300003505	Forest Soil	MASVVVNGIMSEGPGAESVPDTKPQPELVIGLLAAPGPASELTESLVGEIADRLA
Ga0062387_1013420211	3300004091	Bog Forest Soil	MASVVVNGIMSEGPGAESVSDTKPRPELVIGLLAAPGPASELTESLVGEIAGRLAGQ
Ga0062389_1043882881	3300004092	Bog Forest Soil	MASVVVNGIVTQGPGAESVPDTKPDPELVIGLLAAPGPASELTES
Ga0070677_106577181	3300005333	Miscanthus Rhizosphere	MASVVVNGIVAESPGAESVPDTKPRLELVIGLLAAPGPASELTESLVGEIADRLAGQLAGVRWRVEFVSDRLVQPP
Ga0070709_100550731	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MTSVVVNGIVAEGPGAQSGAEISRQPELVIGLLASPGPASELTESLVGEIADRLAGQLPGVRW
Ga0070709_106202761	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MTSVVVNGIVTEGPGSQSGAETSRQPELVLGLLASPGPASELTESLAGEIAGRLAGQLP
Ga0070709_107127691	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MTSVVVNGIVTEGPGSQSGTETSRQPELVLGLLASPGPASELTESLAGEIAGRLAGQLP
Ga0070714_1002265955	3300005435	Agricultural Soil	MASVVVNGIVAESRGAESVPDTKPRLELVIGLLAAPGPASELTESLVGEIADR
Ga0070714_1014659321	3300005435	Agricultural Soil	MASVVVNGIVAESPDAESVPDTKPRPELVVGLLAAPGPASELTESLVGEIADRLAGQLPGVRWRVEFVS
Ga0070714_1015486722	3300005435	Agricultural Soil	MTSVVLNGIVAEGPGSQSGAETSRQPELVIGLLASPGPASELTGSLA
Ga0070698_1009746272	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MASVVVNGIVSEGSGAESVPDTKPRPELVIGLLAAPGPASELTESLVGEIADRLAGQLPGVRW
Ga0070730_107806881	3300005537	Surface Soil	MASVAVNGIMTEGPGAESIPDTQPQPELVIGLLAAPGAASELTESLVGEIADRLAGQLPGVRW
Ga0070762_101576711	3300005602	Soil	MASVVVNGIMSEGTGAESVPDTKPQPELVIGLLAAPGPASELTESL
Ga0070763_101299464	3300005610	Soil	MASVVVNGIMSEGPGAESVPDTKPQPELVISLLAAPGPASELTESLVGEIADRLAGQLPGVRW
Ga0070717_103714883	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MTSVVVNGIVTEGPGSQSGAETSRRPELVLGLLASPGPASELTESLAGEIAGRLAGQLPEAR
Ga0070717_115704431	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MASVVVHGIVAESPGAESVPDTKLRPELVIGLLAAPGPASELTESLVGEIADRLAGQLP
Ga0070715_104205531	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MASVVVNGIVAESPGAESVPDTKPRLELVIGLLAAPGPASELTESLVGEIADRLAGQLPG
Ga0070715_104517273	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MWAACPLANMASVVVNGIMSEGPGAESVPDTKPQPELVISLLAAPGPASELTESLVGEIADRLAGQLPGVRWRV
Ga0070712_1012968632	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MASVVVNGIVAEGPGAESVPDTKPRPELVIGLLAAPGPASELTESL
Ga0079222_102491821	3300006755	Agricultural Soil	MASVAINGIVAEGPGSQSGAEISRQPELVIGLLASPGPVSELTESLTGEIADRLAGQ
Ga0079221_107317351	3300006804	Agricultural Soil	MTSVVVNGIVTESPGSQSGAETSRQPELVIGLLASPGPASELTESLAGEIADRLAGQLP
Ga0079220_117752221	3300006806	Agricultural Soil	MTSVVVNGIVTESPGSQSGAETSRQPELVIGLLASPGPASELTESLAGEIADRLAGQLPEARWR
Ga0075431_1019273591	3300006847	Populus Rhizosphere	LANMASVVVNGIVSEGLGVESVPDTKPQPELVIGLLAAPGPASELTESLVGEIADRLAGQLPGIRWRVE
Ga0075433_117207961	3300006852	Populus Rhizosphere	VAFVVVNGIVAESPGAESAPDTKPRLELVIGLLAAPGPASELTESLVGEVADRLAG
Ga0075436_1009056731	3300006914	Populus Rhizosphere	MTFVVVNGIVTEGPGSQSGAETTRQPELVIGLLASPGPASELTGSLAGEVIDRLAG
Ga0075435_1002386733	3300007076	Populus Rhizosphere	VAFVVVNGIVAESPGAESAPDTKPRLELVIGLLAAPGPASELTESLVGEIADRLAGQL
Ga0105240_104033573	3300009093	Corn Rhizosphere	MASVVVNGIVAESPGAESVPDTKPRPELVIGLLAAPGPASELTESLVGEIADRLAGQLPGIRWRV
Ga0105245_101901871	3300009098	Miscanthus Rhizosphere	MASVVVNGIVAESPGAESVPDTKPRLELVIGLLAAPGPASELTESLVGEIADRLAGQL
Ga0116214_10124375	3300009520	Peatlands Soil	MASVVVNGIVSEGPGAESVPDTKPQPELVIGLLAAPGPASELTESLVGEIADRLARQLPG
Ga0116218_10030631	3300009522	Peatlands Soil	MASVVVNGTVSEGLGAESIPDTKPQPELVIGLLAAPGPASELTESLVGEIADRLAGQLP
Ga0116221_14337802	3300009523	Peatlands Soil	MASVVVNGTVSEGLGPESIPDTKPQPELVIGLLAAPGPASELTESLVGEIAD
Ga0116224_1000373310	3300009683	Peatlands Soil	VSEGLGAESIPDTKPQPELVIGLLAAPGPASELTESLVGEIADRLAGQLP
Ga0116216_101265121	3300009698	Peatlands Soil	MASVVVNGIVAEGPGAQSVPDTKPQPELVIGLLAAPGPASELTESLVGEIADRLA
Ga0116216_104627851	3300009698	Peatlands Soil	MASVVVNGIVAEGPGAESVPDTEAQPELVIGLLAAPGPASELTESLVGEIADRLAGQLPGVRWRVEFVSD
Ga0116219_100193561	3300009824	Peatlands Soil	MASVVVNGIVSEGPGAESVPDTKPQPELVIGLLAAPGPASELTESLVGEIADRLAGQLP
Ga0134128_103309555	3300010373	Terrestrial Soil	MASVVVNGIVAESPGAESVPDTKPRLELVIGLLAAPGPASELTESLVG
Ga0134128_115229703	3300010373	Terrestrial Soil	MASVVVNEIVAESPGAESVPDTKPRLELVIGLLAAPGPASELTESLVG
Ga0136449_1012050462	3300010379	Peatlands Soil	MASVVVNGIVAEGPGAKSVPDTEVQPELVIGLLAAPGPASELTESLVGEIADRLAGQLPG
Ga0136449_1021675622	3300010379	Peatlands Soil	MASVAVNGIVSEGPGAESVPDTKPQPELVIGLLAAPGPASELTESLVGEI
Ga0136449_1046314641	3300010379	Peatlands Soil	MASVVVNGIVAEGPGAESVPDIKPQPGLVIGLLAAPGPASELTESLVGEIADR
Ga0134126_111085712	3300010396	Terrestrial Soil	MTSVVVNGIVTEGPGSQSGAETSRRPELVLGLLASPGPASELTESLAGEIAGRLAGQLPEARWRVEIVSHRLV
Ga0126346_12637691	3300010865	Boreal Forest Soil	LANIASVAVNGIVAESPDSQSAAETSRQPELVIGLLASPGPASELTESLVG
Ga0137776_12605961	3300010937	Sediment	MTSVVLNGIVAEDPGSQSAAEISRQPELVIGLLASPGPASELTESLVGEIADR
Ga0137399_104543101	3300012203	Vadose Zone Soil	MASVVVNGIVSEGPGAESVPDTEPQPELVIGLLAAPGPASELTESL
Ga0157376_101663551	3300014969	Miscanthus Rhizosphere	MASVVVNGIVAEGPGAESVPDTKPRPELDIGLLAAPGPASELTESLVGEVADRLAGQLAGVRWRVEF
Ga0187812_11029601	3300017821	Freshwater Sediment	MASVVVNGIVAEGPGAESVPDTEARPELVIGLLAAPGPASELTESLVGEIADRLAGQLPGVRW
Ga0187820_12683591	3300017924	Freshwater Sediment	MASVVVNGIVSESPGAESIPDTKPQPELVIGLLAAPGPASELTESLVGEIADRLAGQLPGVRWR
Ga0187807_10171534	3300017926	Freshwater Sediment	MASVVVNGIVAEGPGAQSVPDTKPQPELVIGLLAAPGPASELTESLVGEIADRLAGQ
Ga0187816_105295001	3300017995	Freshwater Sediment	MASVAVNGIVSAGPGPESVPDTKPQPELVIGLLAAPGPTSELTESLVGEIADRLAGQLPGVRWR
Ga0193692_10816962	3300020000	Soil	MASVVVNGIVAESPGAESVPDTKPRPELVIGLLAAPGPASELTESLVGE
Ga0210407_110537642	3300020579	Soil	MASVVVNGIVSEGPGAEGVPDTKLRPELVIGLLAAPGPAPELTESLVGEITDRLSSLVTS
Ga0210400_114805931	3300021170	Soil	MAFVVVNGIVSEGPGAESIPDTKPQPELVIGLLAAPGPASELTESL
Ga0210408_114152921	3300021178	Soil	VNMASVVVNGIMSEGPGAESVPDTKPQPELVISLLAAPGPASELTESLVGEIADRLAGQLPGVRWRVEFVSDR
Ga0210388_113947491	3300021181	Soil	MWAACPLANMASVVVNGIMSEGPGAESVPDTKPQPELVISLLAAPGPASELTESLVGEIADRLAGQLPGVRWRVEFVSDRL
Ga0210397_106775682	3300021403	Soil	MASVVVNGIVAEGPGVESVPDTKPRPELVIGLLAAPGPASELTESLVGEIADRLAGQLPGIRWRVEFVS
Ga0210397_108132272	3300021403	Soil	MASVVVNGIVSEGPGAEGVPDTKLRPELVIGLLAAPGPAPELTESLVGEITDRLSSLV
Ga0210397_112732171	3300021403	Soil	LANMASVVVNGIVSEGLGAENVPDTRPQPELVIGLLAAPGPATELTESLVGEIAD
Ga0210387_115922571	3300021405	Soil	MWAACPLANMASVVVNGIMSEGPGAESVPDTKPQPELVISLLAAPGPASELTESLVGEIADRLAGQLPGV
Ga0210386_105892042	3300021406	Soil	MWAACPLANMASVVVNGIMSEGPGAESVPDTKPQPELVVSLLAAPGPASELTE
Ga0210391_101414494	3300021433	Soil	MAFVVVNGIVSEGPGAESIPDTKPQPELVIGLLAAPGPASELTESLVGEIADRLAGQLPGVRWRVEFV
Ga0210392_100433821	3300021475	Soil	MTSVMVNGIVAEGPGAQSGAETSRRPELVIGLLASPGPASELTESLVGEIADRLAGQLPG
Ga0210402_112074221	3300021478	Soil	MASVVVNGIVAEGPGVESVPDTKPRPELVIGLLAAPGPASELTESLVG
Ga0179589_103072991	3300024288	Vadose Zone Soil	MASVAVNRIMAESPGSQSAAETSRQPELVIGLLASPGPASELTESL
Ga0207692_106950551	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MASVVVNGIVAESPDAESVPDTKPRPELVVGLLAAPGPASELTESLVGEIADRLAGQLPGVRWRVEF
Ga0207685_101075473	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MASVVVNGIVAESPGAESVPDTKPRLELVIGLLAAPGPASELTESLVGEIADRLAGQLPGVRWRVEFVSDRL
Ga0207685_103698341	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	LANMASVVVNGIVSEGLGAESVPDTKPHPELVIGLLAAPGPATELT
Ga0207699_108271591	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MASVVVNGIVAEGPGAESVPDTKPRPELDIGLLAAPGPASELTESLVGEIADRLARQLPGVRWRV
Ga0207684_111428462	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MASVVVNGIVAESPGAESVPDTKPRLELVIGLLAAPGPASELTESLVGEVADRLAGQLAGVRWRVEFV
Ga0207693_107957782	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MASVVVNGIVAEGPGAESVPDTKPRPELDIGLLAAPGPASELTESLVGEIADRLAGQLPG
Ga0207712_115813061	3300025961	Switchgrass Rhizosphere	MASVVVNGIVAESPGAESVPDTKPRPELVIGLLAAPGPASELTESLIGEIADRLAGQ
Ga0209154_12940182	3300026317	Soil	MASVVVNGIVSEGPGAESVPDTEPQPELVIGLLAAPGPASELTGSLVG
Ga0257153_10300562	3300026490	Soil	MASVVVNGIVSEGPGAESVPDTEPQPELVIGLLAAPGPASELTESLVGEIA
Ga0207949_10076612	3300026999	Forest Soil	MASVVVNGIMSEGPGAESVPDTKPQPELVIGLLAAPGPASELTESLVGEIADRLAGQLPGVRWRV
Ga0208099_10602711	3300027096	Forest Soil	MAFVVVNGIVSEGPGAESIPDTKPQPELVIGLLAAPGPASELTESLAGEIAGRLAGQLPGVR
Ga0208488_10265912	3300027110	Forest Soil	VSEYPGAESVPDAKPQPELVIGLLAAPGPASELTESLVGEIAGRLAG
Ga0208368_1102351	3300027161	Forest Soil	MASVVVNGIVAESPGAESVPDTKPRLELVIGLLAAPGPASELTESLVGEIADRLAGQLAGVRW
Ga0208241_10505601	3300027297	Forest Soil	MASVVVNGIVAEGPGAESIPDTKPRPELVIGLLAAPGPASELTESLVGEIADRLAGQLPGVPWRVEFVSDRLVQPPTDLSELIAAGRRMLLER
Ga0208199_10071461	3300027497	Peatlands Soil	MASVVVNGIVSEGPGAESVPDTKPQPELVIGLLAAPGPASELTESLVGEIAD
Ga0208043_11582532	3300027570	Peatlands Soil	MASVVVNGIVSEGPGAESVPDTKPQPELVIGLLAAPGPASELTESLVGEIADRLAGQLPG
Ga0209116_10562702	3300027590	Forest Soil	MWAACHLANMASVVVNGIMSEGPGAESVPDTRPQPELVIGLLAAPGLASELTESLTGEVADRLAGQLPGVRWRVE
Ga0208696_100134119	3300027696	Peatlands Soil	MASVVVNGIVSEGPGAESVPDTKPQPELVIGLLAAPGPASELTESLVGEIADRLAG
Ga0209073_103499331	3300027765	Agricultural Soil	MTSVVVNGIVTEGPGSQSGAETSRQPELVLGLLASPGPASELTES
Ga0209693_100086515	3300027855	Soil	MASVVVNGIMSEGTGAESVPDTKPQPELVIGLLAAPGPASELTES
Ga0209693_100436111	3300027855	Soil	VSEYPGAESVPDAKPQPELVIGLLAAPGPASELTESLVGEIADRL
Ga0209693_101853781	3300027855	Soil	MASVVVNGIMSEGPGAESVPDTKPQPELVIGLLAAPGPASELTESLVGEIADRL
Ga0209275_102374813	3300027884	Soil	LAKMASVVVNGIVSEGPGAESVPDAKPQPELVIGLLAAPGPASELTESLTEEIA
Ga0209275_103983964	3300027884	Soil	MAFVVVNGIVSEGPGAESIPDTKPQPELVIGLLAAPGPASELTESLVGEIAD
Ga0209380_100209937	3300027889	Soil	VNMAFVVVNGIVSEGPGAESIPDTKPQPELVIGLLAAPGPASELTESLVGEIA
Ga0209380_101273471	3300027889	Soil	MASVVVNGIVAEGPGAESVPDTKPRPKLVIGLLAAPGPASELTESLVGEIADRLAGQLPGVRW
Ga0209380_102161651	3300027889	Soil	MASVVVNGIMSEGPGAESVPDTKPQPELVIGLLAAPGPASELTESLVGEIA
Ga0209006_106090131	3300027908	Forest Soil	MRAASQPASMAAVAVNGIMSEDPGAESIPDTKPQPELVIGLLAAPGPASELTESLAAEIADRLAGQLPGVRWRVEFVS
Ga0209006_111373011	3300027908	Forest Soil	MASVAVNGIMSEGPGAESVPDPKPQPEVVIGLLAAPGLASELTESLAGEIADRL
Ga0302223_102227561	3300028781	Palsa	MASVVVNGIMSEGPGAESVPDTEPQPELVIGLLAAPGPASELTESLVGEIADRLAGQLPGVRWRVEFVSD
Ga0302235_101411453	3300028877	Palsa	MASVVVNGIVAEGPGAESVPDTKPRPELVIGLLAAPGPASELTESLVGEIADRLAGQLPGVRW
Ga0310037_100112371	3300030494	Peatlands Soil	MASVVVNGTVSEGLGAESIPDTKPQPELVIGLLAAPGPASELTESLVGEIADRLAGQLPG
Ga0310038_100215941	3300030707	Peatlands Soil	MASVVVNGIVSEGPGAESVPDTKPQPELVIGLLAAPGPASELTESLVGEIADRLARQ
Ga0302324_1011211093	3300031236	Palsa	MASVVVNGIVAEGPGAESVPDTKPRPELVIGLLAAPGPASELTESLVGEIADRLAGQ
Ga0307469_102146821	3300031720	Hardwood Forest Soil	MASVVVNGIVAEGPGAESVPDTKPRPELVIGLLAAPGPASELTESLVGEIADRLAGQLPGVRWRVEV
Ga0307477_105717053	3300031753	Hardwood Forest Soil	MVSVVVNGIMSEGPGAESIPDTKPQPELVIGLLAAPGPASELTESLVG
Ga0307473_112253251	3300031820	Hardwood Forest Soil	MASVVVNGIVAESPGAESVPDTKPRPELVIGLLAAPGPASELTESLVGEIADRLAGQLPGVRWR
Ga0310892_108983882	3300031858	Soil	MASVVVNEIVAESPGAESVPDTKPRPELVIGLLAAPGPASELTESLIGEIADR
Ga0307479_117882871	3300031962	Hardwood Forest Soil	LANMASVVVNGIVSEGLGAESVPDTKPRPELVIGLLAAPGPASELTESLVGEIAGRLAGQLPAVRWRVEF
Ga0335085_121065952	3300032770	Soil	MASVVVNGIVAEGPGVESVPDTKPRPELVIGLLAAPGPASELTE
Ga0335078_105388563	3300032805	Soil	MASVVVNGIVSEGPGAESVPETKPQPELAIGLVAAPGPASELTESLVGEIADRLAGQLPGVRW
Ga0335078_112548382	3300032805	Soil	MASVVVNGIVAEGPGVESVPDTKPRPELVIGLLAAPGPASELTESLVGEIADRLAGQLPGIRWRVE
Ga0335069_119967692	3300032893	Soil	MTSVVVNGIVTEGPGSQSGAETSWQPELVIGLLASPGPASELTESLAG
Ga0335075_104744631	3300032896	Soil	MASVVVNGIASEGPDAESVPDTKPQPELVIGLLAAPGPASELTESLVGEIADRLAGQLPGVRWRV
Ga0335072_113497372	3300032898	Soil	VAFVVVDEIVSQGPGAEGVPDTEPQPELVIGLLAAPGAASELTGSLAGEIA
Ga0335077_106416181	3300033158	Soil	MASVVVNGIVAEGPGAESVPDTKPRPELVIGLLAAPGPASELTESLVGEIAGRLAGQLPGVRWRVEFVS
Ga0310810_110813051	3300033412	Soil	VANTTSVVVNGIVADGPGSQSGAETTRQPELVIGLLASPGPASELTGSLAGE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F083312

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences