Metagenome / Metatranscriptome Family F083305

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F083305
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	64 residues
Representative Sequence	EIWKLFSESAPPVIALVQRLDAEQAEEFHRAFVELYESYRAKDGGVRAPRRYLLVLGRRK
Number of Associated Samples	92
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	4.59 %
% of genes near scaffold ends (potentially truncated)	92.04 %
% of genes from short scaffolds (< 2000 bps)	89.38 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.55

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (82.301 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost (8.850 % of family members)
Environment Ontology (ENVO)	Unclassified (28.319 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (45.133 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 43.18% β-sheet: 2.27% Coil/Unstructured: 54.55%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.55
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.55
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF01546	Peptidase_M20	62.83
PF08241	Methyltransf_11	9.73
PF13649	Methyltransf_25	6.19
PF13847	Methyltransf_31	2.65
PF07136	DUF1385	1.77
PF07687	M20_dimer	1.77
PF12847	Methyltransf_18	0.88
PF00425	Chorismate_bind	0.88
PF00501	AMP-binding	0.88
PF00561	Abhydrolase_1	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG3872	Uncharacterized conserved protein YqhQ, DUF1385 family	Function unknown [S]	1.77

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	82.30 %
Unclassified	root	N/A	17.70 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	82.30 %
Unclassified	root	N/A	17.70 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	82.30 %
Unclassified	root	N/A	17.70 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	78.76 %
Unclassified	root	N/A	17.70 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	78.76 %
Unclassified	root	N/A	17.70 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	18.58 %
Unclassified	root	N/A	17.70 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	2.65 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.70 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	12.39 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	6.19 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2.65 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.70 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	12.39 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	6.19 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.70 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	12.39 %
Hoyosella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Hoyosella	6.19 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.70 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	12.39 %
Hoyosella subflava	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Hoyosella → Hoyosella subflava	6.19 %
unclassified Solirubrobacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.70 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	12.39 %
Hoyosella subflava	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Hoyosella → Hoyosella subflava	6.19 %
Solirubrobacter sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp.	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459006\|GBPF9FW01B1QBA	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	518	Open in IMG/M
2170459009\|GA8DASG02FXQ1N	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	536	Open in IMG/M
2170459009\|GA8DASG02JUI1M	Not Available	535	Open in IMG/M
3300001534\|A15PFW1_10653108	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1055	Open in IMG/M
3300001536\|A1565W1_10694291	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1734	Open in IMG/M
3300001538\|A10PFW1_10440240	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	985	Open in IMG/M
3300001538\|A10PFW1_11118746	Not Available	1245	Open in IMG/M
3300001538\|A10PFW1_11802912	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	582	Open in IMG/M
3300004153\|Ga0063455_100042264	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1486	Open in IMG/M
3300004153\|Ga0063455_100367756	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	829	Open in IMG/M
3300005179\|Ga0066684_10748822	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	650	Open in IMG/M
3300005179\|Ga0066684_11031099	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	530	Open in IMG/M
3300005329\|Ga0070683_102423367	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Hoyosella → Hoyosella subflava	503	Open in IMG/M
3300005337\|Ga0070682_101706471	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	547	Open in IMG/M
3300005339\|Ga0070660_100100068	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2295	Open in IMG/M
3300005344\|Ga0070661_101019868	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	687	Open in IMG/M
3300005355\|Ga0070671_101074321	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Hoyosella → Hoyosella subflava	706	Open in IMG/M
3300005435\|Ga0070714_102224823	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	534	Open in IMG/M
3300005437\|Ga0070710_10076283	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1945	Open in IMG/M
3300005437\|Ga0070710_10808493	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Hoyosella → Hoyosella subflava	670	Open in IMG/M
3300005458\|Ga0070681_10635825	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	982	Open in IMG/M
3300005529\|Ga0070741_10737184	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	866	Open in IMG/M
3300005529\|Ga0070741_10841829	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	798	Open in IMG/M
3300005530\|Ga0070679_101022404	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	771	Open in IMG/M
3300005530\|Ga0070679_101161030	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Hoyosella → Hoyosella subflava	717	Open in IMG/M
3300005539\|Ga0068853_101846720	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	586	Open in IMG/M
3300005546\|Ga0070696_100026687	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3930	Open in IMG/M
3300005547\|Ga0070693_101369897	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Hoyosella → Hoyosella subflava	549	Open in IMG/M
3300005552\|Ga0066701_10821168	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	553	Open in IMG/M
3300005607\|Ga0070740_10328872	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	606	Open in IMG/M
3300005949\|Ga0066791_10047924	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	843	Open in IMG/M
3300006163\|Ga0070715_10634222	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	630	Open in IMG/M
3300006804\|Ga0079221_10913543	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Hoyosella → Hoyosella subflava	646	Open in IMG/M
3300006804\|Ga0079221_11442490	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	550	Open in IMG/M
3300006954\|Ga0079219_12488442	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Hoyosella → Hoyosella subflava	503	Open in IMG/M
3300009088\|Ga0099830_11394469	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	583	Open in IMG/M
3300009661\|Ga0105858_1254903	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	535	Open in IMG/M
3300010362\|Ga0126377_13512419	Not Available	507	Open in IMG/M
3300010375\|Ga0105239_13368390	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	520	Open in IMG/M
3300010401\|Ga0134121_10742686	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	936	Open in IMG/M
3300010937\|Ga0137776_1284278	Not Available	2149	Open in IMG/M
3300011969\|Ga0120166_1007972	All Organisms → cellular organisms → Bacteria	1606	Open in IMG/M
3300012008\|Ga0120174_1061672	All Organisms → cellular organisms → Bacteria	1003	Open in IMG/M
3300012008\|Ga0120174_1090535	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp.	769	Open in IMG/M
3300012019\|Ga0120139_1135934	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	634	Open in IMG/M
3300012198\|Ga0137364_10693243	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	769	Open in IMG/M
3300012209\|Ga0137379_11346421	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	618	Open in IMG/M
3300012210\|Ga0137378_11082852	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	716	Open in IMG/M
3300012358\|Ga0137368_10054208	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3373	Open in IMG/M
3300012961\|Ga0164302_10354798	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	982	Open in IMG/M
3300012961\|Ga0164302_10404351	Not Available	933	Open in IMG/M
3300012961\|Ga0164302_10577791	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	810	Open in IMG/M
3300012986\|Ga0164304_10584153	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	831	Open in IMG/M
3300012987\|Ga0164307_10395071	Not Available	1017	Open in IMG/M
3300012988\|Ga0164306_11394080	Not Available	596	Open in IMG/M
3300013104\|Ga0157370_11169093	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	694	Open in IMG/M
3300013104\|Ga0157370_11286426	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	659	Open in IMG/M
3300013105\|Ga0157369_10881101	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	918	Open in IMG/M
3300013296\|Ga0157374_11978887	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	609	Open in IMG/M
3300013296\|Ga0157374_12161304	Not Available	583	Open in IMG/M
3300013296\|Ga0157374_12835265	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	512	Open in IMG/M
3300013307\|Ga0157372_11957159	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	674	Open in IMG/M
3300013307\|Ga0157372_12877320	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	551	Open in IMG/M
3300014157\|Ga0134078_10248156	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	746	Open in IMG/M
3300014325\|Ga0163163_10886446	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	956	Open in IMG/M
3300014497\|Ga0182008_10590356	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	622	Open in IMG/M
3300015356\|Ga0134073_10426337	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	505	Open in IMG/M
3300016319\|Ga0182033_12056016	Not Available	521	Open in IMG/M
3300017974\|Ga0187777_10017484	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	4544	Open in IMG/M
3300017974\|Ga0187777_11367325	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	522	Open in IMG/M
3300018433\|Ga0066667_11113055	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	684	Open in IMG/M
3300018468\|Ga0066662_12930119	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	507	Open in IMG/M
3300019890\|Ga0193728_1187131	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	880	Open in IMG/M
3300020070\|Ga0206356_10494898	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	676	Open in IMG/M
3300021560\|Ga0126371_13363817	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	540	Open in IMG/M
3300025911\|Ga0207654_10802725	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	680	Open in IMG/M
3300025912\|Ga0207707_10869347	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	747	Open in IMG/M
3300025914\|Ga0207671_10220672	Not Available	1485	Open in IMG/M
3300025921\|Ga0207652_10319345	Not Available	1402	Open in IMG/M
3300025921\|Ga0207652_10658558	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	936	Open in IMG/M
3300025924\|Ga0207694_10779654	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	807	Open in IMG/M
3300025927\|Ga0207687_10098602	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2145	Open in IMG/M
3300025928\|Ga0207700_10129268	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2060	Open in IMG/M
3300025928\|Ga0207700_11164298	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	689	Open in IMG/M
3300025931\|Ga0207644_11756973	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	519	Open in IMG/M
3300025932\|Ga0207690_10965474	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	708	Open in IMG/M
3300025939\|Ga0207665_10188639	Not Available	1497	Open in IMG/M
3300025981\|Ga0207640_10174936	Not Available	1603	Open in IMG/M
3300026041\|Ga0207639_11693321	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	593	Open in IMG/M
3300026216\|Ga0209903_1064569	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	525	Open in IMG/M
3300026330\|Ga0209473_1290325	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	548	Open in IMG/M
3300027469\|Ga0207628_101279	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300028577\|Ga0265318_10061676	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1397	Open in IMG/M
3300028577\|Ga0265318_10298267	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	588	Open in IMG/M
3300028784\|Ga0307282_10412298	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	655	Open in IMG/M
3300028880\|Ga0307300_10282191	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	558	Open in IMG/M
3300030943\|Ga0311366_10660853	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	909	Open in IMG/M
3300031595\|Ga0265313_10239660	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	743	Open in IMG/M
3300031713\|Ga0318496_10477808	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	689	Open in IMG/M
3300031722\|Ga0311351_10735875	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	752	Open in IMG/M
3300031740\|Ga0307468_102442356	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	511	Open in IMG/M
3300031769\|Ga0318526_10151767	Not Available	942	Open in IMG/M
3300031918\|Ga0311367_10205885	Not Available	2059	Open in IMG/M
3300031938\|Ga0308175_101750868	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	696	Open in IMG/M
3300031938\|Ga0308175_102632746	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	563	Open in IMG/M
3300031996\|Ga0308176_10325829	Not Available	1507	Open in IMG/M
3300032770\|Ga0335085_11576873	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	681	Open in IMG/M
3300032893\|Ga0335069_12767918	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300033004\|Ga0335084_12277276	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	524	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	76.99%
Host-Associated	Host-Associated	23.01%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	75.22%
Plants	Host-Associated → Plants	23.01%
Aquatic	Environmental → Aquatic	1.77%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	72.57%
Rhizosphere	Host-Associated → Plants → Rhizosphere	19.47%
Peat	Environmental → Terrestrial → Peat	2.65%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.65%
Freshwater	Environmental → Aquatic → Freshwater	0.89%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.89%
Roots	Host-Associated → Plants → Roots	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	47.79%
Loam	Environmental → Terrestrial → Soil → Loam	16.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.39%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.08%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.08%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.65%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.65%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.89%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.89%
Clay	Environmental → Terrestrial → Soil → Clay	0.89%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.24%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	15.04%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.39%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	8.85%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.08%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.42%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.54%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.54%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.65%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.65%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.65%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.77%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.89%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment	0.89%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	0.89%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.89%

Habitat	Taxonomy	Distribution
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	8.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.08%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	7.08%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.42%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	4.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.54%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.54%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.65%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	2.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.65%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.65%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	2.65%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.65%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	2.65%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.65%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.77%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.77%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.77%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.77%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.77%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	1.77%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.77%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.89%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment	0.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.89%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.89%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	0.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459006	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 0-10cm	Environmental	Open in IMG/M
2170459009	Grass soil microbial communities from Rothamsted Park, UK - July 2009 indirect DNA Tissue lysis 0-10cm	Environmental	Open in IMG/M
3300001534	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A15-PF-7A)- 1 week illumina	Environmental	Open in IMG/M
3300001536	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A15-65cm-8A)- 1 week illumina	Environmental	Open in IMG/M
3300001538	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A10-PF 4A)- 1 week illumina	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005607	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2	Environmental	Open in IMG/M
3300005949	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil leachate replicate DNA2013-051	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009661	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-062	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010937	Fumarole sediment microbial communities, Furnas, Sao Miguel, Azores. Combined Assembly of Gp0156138, Gp0156139	Environmental	Open in IMG/M
3300011969	Permafrost microbial communities from Nunavut, Canada - A23_80cm_12M	Environmental	Open in IMG/M
3300012008	Permafrost microbial communities from Nunavut, Canada - A39_80cm_12M	Environmental	Open in IMG/M
3300012011	Permafrost microbial communities from Nunavut, Canada - A30_65cm_6M	Environmental	Open in IMG/M
3300012019	Permafrost microbial communities from Nunavut, Canada - A7_5cm_12M	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026216	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil leachate replicate DNA2013-051 (SPAdes)	Environmental	Open in IMG/M
3300026330	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)	Environmental	Open in IMG/M
3300027469	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-HINK07-E (SPAdes)	Environmental	Open in IMG/M
3300028577	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG	Host-Associated	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028880	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_181	Environmental	Open in IMG/M
3300030943	III_Fen_N2 coassembly	Environmental	Open in IMG/M
3300031595	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG	Host-Associated	Open in IMG/M
3300031672	Soil microbial communities from Risofladan, Vaasa, Finland - OX-2	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031722	II_Fen_N3 coassembly	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031918	III_Fen_N3 coassembly	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
L01_07818600	2170459006	Grass Soil	FDLDFEDGTLWLEAGSGEEIWSLFSQSAPPVIHLINQLDESKREEFHRAFVELYEGYRDDDGGIRAPRRYLLVLGRRT
F47_01804710	2170459009	Grass Soil	EIWKLFSESAPPVIALVQRLDAEQAEEFHRAFVELYESYRAKDGGVRAPRRYLLVLGRRK
F47_09056330	2170459009	Grass Soil	VVAIVARLPPEGVEEFHQAFVELYEGYRTDDGGVRAPRRYLLVLGRRK
A15PFW1_106531083	3300001534	Permafrost	ESGEEIWKLFSESAPPVIALVKQLDDTRREEFHRAFVELYESYATKDGGVRAPRRYLLVLGRRK*
A1565W1_106942914	3300001536	Permafrost	PVIALIERLDAETGEEFHRAFVELYESYRTKDGGVRAPRRYLLVVGRRK*
A10PFW1_104402401	3300001538	Permafrost	PVIALVQRLDAERVEEFHRAFVELYESYRTKDGEVRAPRRYLLVLGRRK*
A10PFW1_111187462	3300001538	Permafrost	AGSGEEIWKLFSESAPPVIALIERLDAETGEEFHRAFVELYESYRTKDGGVRAPRRYLLVVGRRK*
A10PFW1_118029122	3300001538	Permafrost	LFSESAPPVIALIKQLDDKGREEFHRAFVELYETYGTKDGIRAPRRYLLVLGRRK*
Ga0063455_1000422641	3300004153	Soil	AEHFELEFEDGTLWLEAGSGEEIWKLFSESAPPVIALLSQLDDEGKKEFHNAFVELYETYRTKDGVVRAPRRYLLVLGRRK*
Ga0063455_1003677562	3300004153	Soil	WLEADSAEEIWKLFSESAPPVIALLRQLDDAQREAFHQAFVELYEGYRTKDGGVRAPRRYLLVLGRRK*
Ga0066684_107488222	3300005179	Soil	LWFEADSPEEIWDLFSHSAPPVIALLKQLGEERGEEFHRAFVELYEGYRTKDGGVRAPRRYLLILGRRK*
Ga0066684_110310992	3300005179	Soil	IWKLFSESAPPVIALVKQLKDERREEFHRAFVELYESYRTKDGDVRAPRRYLLVLGRRK*
Ga0070683_1024233671	3300005329	Corn Rhizosphere	EADSGEEIWQLFSESAPPVVTLLGRLDDEQKEAFHKAFVDLQETYRTDEVVRVPRRYLLVLGRRK*
Ga0070682_1017064712	3300005337	Corn Rhizosphere	EYEDGTLWIEAESAEEVWKLFSESAPPVVALASKLSDERREEFHRAFVELYEGYRVEEGGIRAPRRYLIVLGRRK*
Ga0070660_1001000683	3300005339	Corn Rhizosphere	EEIWELFSESAPPVIALVKRLDEQGADQLHQAFVELYETYRTPEGGIRAPRRYLLVLGTRK*
Ga0070661_1010198682	3300005344	Corn Rhizosphere	EADSGEEIWELFSESAPPVIALVKRLDEQGAEQFHRAFVGLYEQYRSPEGGIRAPRRYLLVLGTRK*
Ga0070671_1010743211	3300005355	Switchgrass Rhizosphere	IWQLFSESAPPVVTLLGRLDDEQKEAFHQAFVELQETYRTDEVVRVPRRYLLVLGRKK*
Ga0070714_1022248232	3300005435	Agricultural Soil	GEEIWKLFSESAPPVIALLKRLDETRAEQFHRAFVELYEGYRTPEGGVRAPRRYLLVLGTRK*
Ga0070710_100762833	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	EDFELEFEDGTLWLEADSGEDIWKLFSESAPPVVALVKRLDDQRAAEFHEAFVELYESYRTPEGGVRAPRRYLLVLGSRK*
Ga0070710_108084932	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	FSESAPPVVTLLGRLDDEQKEAFHQAFVELQETYRTDEVVRVPRRYLLVLGRRK*
Ga0070681_106358252	3300005458	Corn Rhizosphere	ESAPPVIALVKRLDEQGAEQFHRAFVELYEQYRTPEGGIRAPRRYLLVLGARK*
Ga0070741_107371841	3300005529	Surface Soil	DGTLWLEATSGEEIWELFSESAPPVIALIKRLDAGRVAEFHQAFVDLYEGYRTPEGDIRAPRRYLLVIGTRR*
Ga0070741_108418291	3300005529	Surface Soil	EEIWKLFSESAPPVIALVKRLDGEQADEFHRAFVELYEGYRTPGGGIRAPRRYLLVLGRRK*
Ga0070679_1010224041	3300005530	Corn Rhizosphere	AEEIWELFSESAPPVIALVKRLDEQGAAQFHKAFVELYETYRTPEGGIRAPRRYLLVLGTRK*
Ga0070679_1011610302	3300005530	Corn Rhizosphere	FELEFEDGTLWLEAESGEEIWSLFSESAPPVVALVQRLDPERAEEFHRAFVELYESYRTPDGGIRAPRRYLLVLGRRK*
Ga0068853_1018467202	3300005539	Corn Rhizosphere	FELEYEDGTLWLEAESGEEIWKLFSESAPPVIALAKQLDDTRREEFHRAFVELYESYATKDGGIRAPRRYLLVLGRRK*
Ga0070696_1000266875	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	LFSESAPPVIALVKRLDEQGAEQFHRAFVELYEGYRSPEGDIRAPRRYLLVLGTRK*
Ga0070693_1013698972	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	EDFELEFEDGTLWIEADSGEEIWQLFSESAPPVVTLLGRLDDEQKEAFHKAFVDLQETYRTDEVVRVPRRYLLVLGRRK*
Ga0066701_108211681	3300005552	Soil	EAESGEEIWKLFSESAPPVIALVKQLDDKRRAEFHGAFVELYESYATKDGGIRAPRRYLLVLGRRK*
Ga0070740_103288722	3300005607	Surface Soil	LFSESAPPVIALVKRLDGEQADEFHRAFVELYEGYRTPGGGIRAPRRYLLVLGRRK*
Ga0066791_100479242	3300005949	Soil	LNEDFELEFEDGTLWLEASSGEEIWKLFSESAPPVISLVQRLDSEQTEKFHRAFVELYESYRTKDGGVRAPRRYLLVLGRRK*
Ga0070715_106342221	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	DGTLWLEAESAEEIWKLFSESAPPVVALVKQLDDEKRERFHRAFVELYESYGTKDGSIRAPRRYLLVLGRRK*
Ga0079221_109135433	3300006804	Agricultural Soil	ELEFDDGTLWLEADSGEEIWRLFSESSPPVVSLVRRLDTVRREEFHRAFVQLYDSYRTPDGRVRAPRRYLLVLGRRK*
Ga0079221_114424902	3300006804	Agricultural Soil	WLEADSAEEIWRLFSESAPPVVALLRQLDEAQGERFHQAFVELYEGYREKGGGIRAPRRYLLVLGRRK*
Ga0079219_124884422	3300006954	Agricultural Soil	TLWLEAESGEEIWQLFSESAPPVVSFVRHLDPSQREDFHREFVELYDSYRTKDGRVRAPRRYLLVLGRRKPWPSKP*
Ga0099830_113944691	3300009088	Vadose Zone Soil	DFEIEFEDGTLWLDAASGEEIWQLFSESAPPVVTLLRTFDAPKREAFHEAFVEFYEGYRTDEGEIRAPRRYLLVVGRRK*
Ga0105858_12549032	3300009661	Permafrost Soil	WEVFSQSAPPVVSLLGRLSEEDAQEFHRAFVELYESYRTPEGGIRAPRRYLLVLGRRK*
Ga0126377_135124191	3300010362	Tropical Forest Soil	DDFELEFQDGTLWLEAASGEEIWQLFSESAPPVVAIVSRLKPEGVEEFHRAFVELYEGYRTDDGGIRAPRRYLLVLGRRK*
Ga0134128_114615152	3300010373	Terrestrial Soil	ALVKRLDEQGAEQFHEAFVELYEQYRTSDAGIRAPRRYLLVLGTRK*
Ga0105239_133683901	3300010375	Corn Rhizosphere	LEFEDGTIWLEADSGEEIWELFSESAPPVIALVKRLDEQGAAQFHKAFVELYETYRTPEGGIRAPRRYLLVLGTRK*
Ga0134121_107426862	3300010401	Terrestrial Soil	SGEDIWKLFSESAPPVIALVKRLDGQRAAEFHQAFVELYESYRTPEGGVRAPRRYLLVLGSRK*
Ga0137776_12842784	3300010937	Sediment	GTLWLEADSAEEIWELFSQSAGPVIALLGQLGDDRSEEFHKAFVALYDTYREGDGIRAPRRYLLVTGTRR*
Ga0120166_10079724	3300011969	Permafrost	MLGQDFELEFEDGTLWLEASSGEEIWKLFSESAPPVISLVQRLDAEHAEEFHCAFVELYESYRAKDGGVRAPRRYLLVLGRRK*
Ga0120174_10616722	3300012008	Permafrost	VIALVKQLDDTRREEFHRAFVELYESYATKDGGVRAPRRYLLVLGRRK*
Ga0120174_10905353	3300012008	Permafrost	FELEFEDGTLWLEAGSGEEIWKLFSESAPPVIALIERLDAETGEEFHRAFVELYESYRTKDGGVRAPRRYLLVVGRRK*
Ga0120152_11231691	3300012011	Permafrost	ALVKQLHDKRREEFHRAFVEFYESYATKDDGIRAPRRYLLVLGRRK*
Ga0120139_11359341	3300012019	Permafrost	VEDMLGEEFELEFEDGTLWLEADSGGEIWKLFSESAPPVIALVKRLDEQGAEQFHRAFVELYEQYRAPEGGIRAPRRYLLVLGTRK*
Ga0137364_106932431	3300012198	Vadose Zone Soil	FELEFEDGTLWLEADSAEEIWNLFSESAPPVIALLRQLDAAQGEAFHRAFVELYEGYRKNDGGVRAPRRYLLVLGRRK*
Ga0137379_113464212	3300012209	Vadose Zone Soil	EDGTLWLEAESGEEIWELFSQSAPPVIALVRQLDAERAAAFHRAFVELYESYRVSDGEVRAPRRYLLVLGRRK*
Ga0137378_110828521	3300012210	Vadose Zone Soil	DGSVWFDAESGEELWELFSQSAPPVIALVRQLDAERAAAFHRAFVELYESYRVSDGEVRAPRRYLLVLGRRK*
Ga0137368_100542085	3300012358	Vadose Zone Soil	MLAMSLTPPGREELHDRFVAHYEGYRTDQGIRAPREYLLVLGRRR*
Ga0164302_103547982	3300012961	Soil	IALVKRLDEQGAEQFHEAFVELYEQYRAPEGGIRAPRRYLLVLGTRK*
Ga0164302_104043512	3300012961	Soil	EEVWKLFSEAAAPVDYLVAKLDEGRREEFHRAFVELYEGYRTDEGGIRAPRRYLIVLGRRK*
Ga0164302_105777912	3300012961	Soil	PVISLLKRLDAARAEEFHRAFVELYDSYRTADGDVRAPRRYLLVHGRRK*
Ga0164304_105841532	3300012986	Soil	SGEEIWQLFSESAPPVVTLLGRLDDEQKEAFHKAFVDLQETYRTDEVVRVPRRYLLVLGRRK*
Ga0164307_103950711	3300012987	Soil	EVWRLFSESAPPVVALIRQLDEAKREEFHGAFVELYDSYRAKDGRVRAPRRYLLVLGRRK
Ga0164306_113940801	3300012988	Soil	PVIALVKRLDGQRAAEFHQAFVELYESYRTPEGGVRAPRRYLLVLGSRK*
Ga0157370_111690931	3300013104	Corn Rhizosphere	REDHVEDMLSEEFELEFEDGTVWLEADSGEEIWELFSESAPPVIALVKRLDEQGADQLHQAFVELYETYRTPEGGIRAPRRYLLVLGTRK*
Ga0157370_112864262	3300013104	Corn Rhizosphere	FDLEYVDGTLWLEAESGEEIWELFSQSAPPVIELVKRLQPGQVDDFHGAFVDLYESYRLPEGGIRAPRRYLLVLGRRK*
Ga0157369_108811011	3300013105	Corn Rhizosphere	SAPPVIALVKRLDEQGAEQFHRAFVGLYEQYRSPEGGIRAPRRYLLVLGTRK*
Ga0157374_119788871	3300013296	Miscanthus Rhizosphere	EFEDGTVWLEANSGEEIWELFSESAPPVIALVKRLDEQGAEQFHRAFVGLYEQYRSPEGGIRAPRRYLLVLGTRK*
Ga0157374_121613041	3300013296	Miscanthus Rhizosphere	VWKLFSESAPPVVALASKLSDERREEFHRAFVELYEGYRVEEGGIRAPRRYLIVLGRRK*
Ga0157374_128352651	3300013296	Miscanthus Rhizosphere	LEADSGEDIWKLFSESAPPVIALVKRLDGQRAAEFHQAFVELYESYRTPEGGVRAPRRYLLVLGSRK*
Ga0157372_119571592	3300013307	Corn Rhizosphere	IWELFSESAPPVIALVKRLDEQGAEQFHQAFVELYETYRTPEGGVRAPRRYLLVLGTRK*
Ga0157372_128773202	3300013307	Corn Rhizosphere	DFELEFEDGTLWLEADTAEEIWKLFSESAPPVIALIQRLAPGEVEEFHRAFVELYEGYRTDDSRVRAPRRYLLVLGRRK*
Ga0134078_102481563	3300014157	Grasslands Soil	EATSGEEIWNLFSESAPPVVAMVRHLDEPRREDFHRAFVELYESYRTEDGGIRAPRRYLLVLGRRK*
Ga0163163_108864462	3300014325	Switchgrass Rhizosphere	LGEDFALEFEDGAVWLEADSGEEIWELFSESAPPVIALVKRLDEQGAEQFHDAFVELYEQYRTSDAGIRAPRRYLLVLGTRK*
Ga0182008_105903561	3300014497	Rhizosphere	VWLEAGSGEEIWELFSESAPPVIALVKRLDEQGAEQFHRAFVELYESYRTPEGSIRAPRRYLLVLGTRK*
Ga0134073_104263371	3300015356	Grasslands Soil	VIALLKQLDEAKREEFHRAFVELYESYRTKDGGVRAPRRYLLVLGRRK*
Ga0182033_120560161	3300016319	Soil	PPVQALLSQLDEPRAEEFHQAFVELYEGYRTPNDGVRAPRRYLLVLGTRR
Ga0187809_104243572	3300017937	Freshwater Sediment	VALLRRLGPAAREEFHQAFVEVYESYRTPEGGIRAPRRYLLVLGTRR
Ga0187777_100174846	3300017974	Tropical Peatland	SLLRRLRPDAAEEFHRAFVELYEGYRTPEGGIRAPRRYLLSLGTRR
Ga0187777_113673252	3300017974	Tropical Peatland	HVEDMLGEEFELEFEDGTVWLEAESGEEIWSLFSESAPPVMALVEHLSADEVEQFHEAFVELYESYRSEDGGIRAPRRYLLVLGTRK
Ga0066667_111130552	3300018433	Grasslands Soil	LFSESAPPVVSLLARLDEQRAEEFHRAFVEVYESYRAPDGGIRAPRRYLLVLGRRK
Ga0066662_129301191	3300018468	Grasslands Soil	APPVIALVKQLKDERREEFHRAFVELYESYRTKDGDVRAPRRYLLVLGRRK
Ga0193728_11871311	3300019890	Soil	EAGSGEEIWKLFSESAPPVIALVERLDAETGEKFHQAFVELYESYRTKDGGVRAPRRYLLVVGRRK
Ga0206356_104948982	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	SESAPPVIALAKQLDDTRREEFHRAFVELYESYATKDGGIRAPRRYLLVLGRRK
Ga0126371_133638172	3300021560	Tropical Forest Soil	WDLFSQSAGPVIALLRQLGEERSEEFHQAFVALYDGYREGDGIRAPRRYLLVTGTRR
Ga0207654_108027251	3300025911	Corn Rhizosphere	PVVALVKRLDEQGAEQFHRAFVELYEQYRVPEGGIRAPRRYLLVLGTRK
Ga0207707_108693471	3300025912	Corn Rhizosphere	SGEEIWELFSESAPPVIALVKRLDEQGAAQFHKAFVELYETYRTPEGGIRAPRRYLLVLGTRK
Ga0207671_102206722	3300025914	Corn Rhizosphere	ADSGEEIWELFSESAPPVIALVKRLDEQGAEQFHRAFVELYEQYRVPEGGIRAPRRYLLVLGTRK
Ga0207652_103193452	3300025921	Corn Rhizosphere	LGDEFELEYEDGTLWLEAESGEEIWKLFSESAPPVIALAKQLDDTRREEFHRAFVELYESYATKDGGIRAPRRYLLVLGRRK
Ga0207652_106585582	3300025921	Corn Rhizosphere	IWELFSESAPPVIALVKRLDEQGAAQFHKAFVELYETYRTPEGGIRAPRRYLLVLGTRK
Ga0207694_107796541	3300025924	Corn Rhizosphere	FSESAPPVIALVKRLDEQGAEQFHRAFVELYEGYRSPEGDIRAPRRYLLVLGTRK
Ga0207687_100986024	3300025927	Miscanthus Rhizosphere	DGTLWIEAESGEEIWQLFSESAPPVVTLLARLDDEQKEAFHQAFVDLQETYRTDEGGVRVPRRYLLVLGRRK
Ga0207700_101292683	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	EEIWKLFSESAPPVVAIVSRLKPEGVEEFHRAFVELYESYRADDGGIRAPRRYLLVLGRR
Ga0207700_111642982	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	LEAESGEEIWKLFSESAPPVIALVKQLDDARREEFHRAFVELYESYATKDGGIRAPRRYLLVLGRRK
Ga0207644_117569731	3300025931	Switchgrass Rhizosphere	GEEIWQLFSESAPPVVTLLGRLDDEQKEAFHQAFVELQETYRTDEVVRVPRRYLLVLGRK
Ga0207690_109654741	3300025932	Corn Rhizosphere	PPVIALVKRLDEQGAAQFHKAFVELYETYRTPEGGIRAPRRYLLVLGTRK
Ga0207665_101886392	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	KLFSESAPPVIALLRRLDEEQRREFHRAFVELYDGYRTKDGGVRAPRRYLLVLGRRK
Ga0207640_101749363	3300025981	Corn Rhizosphere	MLAEDFELEFEDGTIWLEADSGEEIWELFSESAPPVIALVKRLDEQGADQLHQAFVELYETYRTPEGGIRAPRRYLLVLGTRK
Ga0207639_116933211	3300026041	Corn Rhizosphere	WLEADSAEEIWKLFSESAPPVIALVKQLDAEQAEQFHQAFVELYESYRDDSGAIRAPRRYLLVLGRRKPWPSKP
Ga0209903_10645692	3300026216	Soil	MLNEDFELEFEDGTLWLEASSGEEIWKLFSESAPPVISLVQRLDSEQTEKFHRAFVELYESYRTKDGGVRAPRRYLLVLGRRK
Ga0209473_12903252	3300026330	Soil	IWKLFSESAPPVIALVKQLKDERREEFHRAFVELYESYRTKDGDVRAPRRYLLVLGRRK
Ga0207628_1012792	3300027469	Soil	VVAMVRHLDDAQREEFHRAFVELYEGYRTEDGGIRAPRRYLLVLGRRK
Ga0265318_100616762	3300028577	Rhizosphere	PPVISLLARLNEEDAQEFHRAFVELYESYRTPEGGIRAPRRYLLVLGRRK
Ga0265318_102982672	3300028577	Rhizosphere	QSAPPVISLLGRLSEDDGEEFHRAFVELYESYRTPEGGIRAPRRYLLVLGRRK
Ga0307282_104122981	3300028784	Soil	FSESAPPVIALAKQLDDATREEFHRAFVELYESYATKDGGIRAPRRYLLVLGRRK
Ga0307300_102821912	3300028880	Soil	ADSGEEIWQLFSESAPPVVTLLGRLDDEQKEAFHQAFVDLQETYRTDEVVRVPRRYLLVLGRRK
Ga0311366_106608532	3300030943	Fen	FELEFVDGTLWLEAESGEEIWSLFSESAPPVIALLQRLEPSQREEFHQAFVELYEGYRTEEGGIRAPRRYLLVLGRRK
Ga0265313_102396601	3300031595	Rhizosphere	QSAPPVVSLLARLNEEDSAEFHRAFVELYESYRTKEGGIRAPRRYLLVLGRRK
Ga0307373_106474352	3300031672	Soil	PVIALLRRLDAERAAQFHEAFVELYEGYRTESDGVRAPRRYLLVKGTRR
Ga0318496_104778082	3300031713	Soil	FSQSAPPVIAIVQKLDDEQAEEFHGAFVELYDEYREGNGVRVPRRYLLIKGRRK
Ga0311351_107358751	3300031722	Fen	TLWLEAESGEEIWSLFSESAPPVIALLQRLEPSQREEFHQAFVELYEGYRTEDGGIRAPRRYLLVLGRRK
Ga0307468_1024423562	3300031740	Hardwood Forest Soil	DGTLWLEADSAEEIWELFSQSAPPVIALLKQLGDDEGEEFHRAFVELYEGYGTNDGGVRAPRRYLLVLGRRK
Ga0318526_101517672	3300031769	Soil	FSTSAPPVVALLRRLDPVSAEEFHRAFVELYEGYRTPDGGVRAPRRYLLSLGTRR
Ga0311367_102058853	3300031918	Fen	IWSLFSESAPPVIALLQRLEPSQREEFHQAFVELYEGYRTEDGGIRAPRRYLLVLGRRK
Ga0308175_1017508681	3300031938	Soil	MLAEDFELEFEDGTIWLEADSGEEIWELFSESAPPVIALVKRLDEQGAAQFHKAFVELYETYRTPEGGIRAPRRYLLVLGTRK
Ga0308175_1026327462	3300031938	Soil	AESAEEIWKLFSESAPPVLALIARLEPRQVEEFHDAFVELYEGYRTDGGGIRAPRRYLLVLGRRK
Ga0308176_103258292	3300031996	Soil	EEIWRLFSESAPPVIALIERLDAERVAEFHRAFVELYESYRAKDGGIRAPRRYLLVLGRR
Ga0335085_115768731	3300032770	Soil	VSMVKRLDGQELEEFHRAFVELYESYRTPEGSVRAPRRYLLVLGTRK
Ga0335069_127679181	3300032893	Soil	FSRTGTPVAALLSRLDAGKAEEFHRAFVELYEEHRNGEGIRAPRRYVVVLGRRR
Ga0335084_122772762	3300033004	Soil	HVEAMLGEDIELEFEDGTLWLEAETGEEIWTLFSESAPPEISLIRRLEADAVEEFHRAFVELYESYRAEDGGIRAPRRYLLVLGTRR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F083305

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences