Metagenome Family F083298

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F083298
Family Type	Metagenome
Number of Sequences	113
Average Sequence Length	43 residues
Representative Sequence	LRIHVLRILAFLLVCVAAVPCRAQDKVTILYDAFGESKELTKDWGFS
Number of Associated Samples	96
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	94.69 %
% of genes near scaffold ends (potentially truncated)	99.12 %
% of genes from short scaffolds (< 2000 bps)	92.04 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (60.177 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland (15.044 % of family members)
Environment Ontology (ENVO)	Unclassified (32.743 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (61.947 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 56.00% β-sheet: 0.00% Coil/Unstructured: 44.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF00069	Pkinase	3.54
PF08281	Sigma70_r4_2	2.65
PF05598	DUF772	2.65
PF02633	Creatininase	2.65
PF06439	3keto-disac_hyd	1.77
PF13365	Trypsin_2	1.77
PF01862	PvlArgDC	1.77
PF02784	Orn_Arg_deC_N	1.77
PF13682	CZB	1.77
PF08448	PAS_4	0.88
PF14014	DUF4230	0.88
PF00296	Bac_luciferase	0.88
PF07676	PD40	0.88
PF14329	DUF4386	0.88
PF01872	RibD_C	0.88
PF01548	DEDD_Tnp_IS110	0.88
PF00881	Nitroreductase	0.88
PF11185	DUF2971	0.88
PF01527	HTH_Tnp_1	0.88
PF00312	Ribosomal_S15	0.88
PF01425	Amidase	0.88
PF13411	MerR_1	0.88
PF08897	DUF1841	0.88
PF00278	Orn_DAP_Arg_deC	0.88
PF05988	DUF899	0.88
PF01408	GFO_IDH_MocA	0.88
PF11453	DUF2950	0.88
PF00144	Beta-lactamase	0.88
PF12706	Lactamase_B_2	0.88
PF08327	AHSA1	0.88
PF05163	DinB	0.88
PF01740	STAS	0.88
PF02371	Transposase_20	0.88
PF04542	Sigma70_r2	0.88
PF00850	Hist_deacetyl	0.88
PF13376	OmdA	0.88
PF14257	DUF4349	0.88
PF03551	PadR	0.88
PF13426	PAS_9	0.88
PF13519	VWA_2	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	14.16
COG0019	Diaminopimelate decarboxylase	Amino acid transport and metabolism [E]	2.65
COG1166	Arginine decarboxylase (spermidine biosynthesis)	Amino acid transport and metabolism [E]	2.65
COG1402	Creatinine amidohydrolase/Fe(II)-dependent FAPy formamide hydrolase (riboflavin and F420 biosynthesis)	Coenzyme transport and metabolism [H]	2.65
COG0123	Acetoin utilization deacetylase AcuC or a related deacetylase	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.77
COG3547	Transposase	Mobilome: prophages, transposons [X]	1.77
COG1945	Pyruvoyl-dependent arginine decarboxylase	Amino acid transport and metabolism [E]	1.77
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.88
COG4312	Predicted dithiol-disulfide oxidoreductase, DUF899 family	General function prediction only [R]	0.88
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.88
COG2318	Bacillithiol/mycothiol S-transferase BstA/DinB, DinB/YfiT family (unrelated to E. coli DinB)	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.88
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.88
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.88
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.88
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.88
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.88
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.88
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.88
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.88
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.88
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.88
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.88
COG0184	Ribosomal protein S15P/S13E	Translation, ribosomal structure and biogenesis [J]	0.88
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	60.18 %
Unclassified	root	N/A	39.82 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	60.18 %
Unclassified	root	N/A	39.82 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	60.18 %
Unclassified	root	N/A	39.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.82 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	20.35 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.65 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	0.88 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.82 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	9.73 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	4.42 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.65 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.88 %
uncultured bacterium F42-01	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium F42-01	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.73 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	4.42 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.65 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.88 %
uncultured bacterium F42-01	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium F42-01	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.73 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3.54 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.65 %
unclassified Terriglobales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales	0.88 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.88 %
uncultured bacterium F42-01	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium F42-01	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.73 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.65 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	0.88 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	0.88 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	0.88 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.88 %
uncultured bacterium F42-01	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium F42-01	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.73 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.65 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	0.88 %
unclassified Granulicella	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella	0.88 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	0.88 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.88 %
uncultured bacterium F42-01	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium F42-01	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.73 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.65 %
Granulicella sp. L60	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. L60	0.88 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	0.88 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	0.88 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.88 %
uncultured bacterium F42-01	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium F42-01	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001087\|JGI12677J13195_1008828	Not Available	721	Open in IMG/M
3300001166\|JGI12694J13545_1025226	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300001167\|JGI12673J13574_1005036	All Organisms → cellular organisms → Bacteria	771	Open in IMG/M
3300001593\|JGI12635J15846_10106735	All Organisms → cellular organisms → Bacteria	1999	Open in IMG/M
3300002245\|JGIcombinedJ26739_100255777	Not Available	1638	Open in IMG/M
3300002245\|JGIcombinedJ26739_100792269	All Organisms → cellular organisms → Bacteria → Proteobacteria	828	Open in IMG/M
3300002245\|JGIcombinedJ26739_101630415	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300003351\|JGI26346J50198_1022305	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300004080\|Ga0062385_10409806	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	813	Open in IMG/M
3300004082\|Ga0062384_100489035	All Organisms → cellular organisms → Bacteria → Acidobacteria	813	Open in IMG/M
3300004091\|Ga0062387_100067660	All Organisms → cellular organisms → Bacteria	1793	Open in IMG/M
3300004091\|Ga0062387_100176444	All Organisms → cellular organisms → Bacteria	1263	Open in IMG/M
3300004092\|Ga0062389_104662680	Not Available	516	Open in IMG/M
3300005436\|Ga0070713_100221955	All Organisms → cellular organisms → Bacteria	1715	Open in IMG/M
3300005591\|Ga0070761_10750605	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300005602\|Ga0070762_11177993	Not Available	530	Open in IMG/M
3300005921\|Ga0070766_10530120	Not Available	785	Open in IMG/M
3300005921\|Ga0070766_11215637	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300006050\|Ga0075028_100841130	Not Available	562	Open in IMG/M
3300006059\|Ga0075017_100097351	Not Available	2045	Open in IMG/M
3300006059\|Ga0075017_101312919	Not Available	568	Open in IMG/M
3300006086\|Ga0075019_10161604	Not Available	1313	Open in IMG/M
3300006163\|Ga0070715_10786235	All Organisms → cellular organisms → Bacteria → Proteobacteria	576	Open in IMG/M
3300006175\|Ga0070712_100577971	All Organisms → cellular organisms → Bacteria	949	Open in IMG/M
3300006176\|Ga0070765_100301883	Not Available	1480	Open in IMG/M
3300006176\|Ga0070765_101673233	All Organisms → cellular organisms → Bacteria → Proteobacteria	598	Open in IMG/M
3300009524\|Ga0116225_1302516	Not Available	714	Open in IMG/M
3300009623\|Ga0116133_1123630	All Organisms → cellular organisms → Bacteria	667	Open in IMG/M
3300009764\|Ga0116134_1041519	Not Available	1785	Open in IMG/M
3300009792\|Ga0126374_10267138	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1127	Open in IMG/M
3300009839\|Ga0116223_10806407	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	537	Open in IMG/M
3300010361\|Ga0126378_10533459	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	1289	Open in IMG/M
3300010376\|Ga0126381_100091846	All Organisms → cellular organisms → Bacteria	3852	Open in IMG/M
3300010376\|Ga0126381_100666105	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1486	Open in IMG/M
3300010379\|Ga0136449_100991213	All Organisms → cellular organisms → Bacteria	1354	Open in IMG/M
3300011269\|Ga0137392_11426135	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300012096\|Ga0137389_11208717	Not Available	647	Open in IMG/M
3300014156\|Ga0181518_10100198	Not Available	1619	Open in IMG/M
3300014201\|Ga0181537_11041961	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300014654\|Ga0181525_10240046	Not Available	989	Open in IMG/M
3300014657\|Ga0181522_10160463	All Organisms → cellular organisms → Bacteria	1317	Open in IMG/M
3300017939\|Ga0187775_10027186	All Organisms → cellular organisms → Bacteria	1616	Open in IMG/M
3300017943\|Ga0187819_10621741	All Organisms → cellular organisms → Bacteria	611	Open in IMG/M
3300017946\|Ga0187879_10840455	Not Available	513	Open in IMG/M
3300017970\|Ga0187783_10346938	Not Available	1081	Open in IMG/M
3300017972\|Ga0187781_10775609	Not Available	695	Open in IMG/M
3300017972\|Ga0187781_11122424	Not Available	577	Open in IMG/M
3300017973\|Ga0187780_10017899	All Organisms → cellular organisms → Bacteria → Acidobacteria	5125	Open in IMG/M
3300017973\|Ga0187780_10221344	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1322	Open in IMG/M
3300017975\|Ga0187782_10708196	Not Available	776	Open in IMG/M
3300017975\|Ga0187782_10886104	All Organisms → cellular organisms → Bacteria → Acidobacteria	692	Open in IMG/M
3300018003\|Ga0187876_1157562	Not Available	789	Open in IMG/M
3300018034\|Ga0187863_10231250	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1028	Open in IMG/M
3300018035\|Ga0187875_10088693	All Organisms → cellular organisms → Bacteria	1768	Open in IMG/M
3300018040\|Ga0187862_10379207	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	873	Open in IMG/M
3300018042\|Ga0187871_10218335	All Organisms → cellular organisms → Bacteria	1062	Open in IMG/M
3300018043\|Ga0187887_10212700	All Organisms → cellular organisms → Bacteria	1149	Open in IMG/M
3300018047\|Ga0187859_10093437	All Organisms → cellular organisms → Bacteria	1582	Open in IMG/M
3300018047\|Ga0187859_10218450	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1019	Open in IMG/M
3300018057\|Ga0187858_10713705	Not Available	598	Open in IMG/M
3300018062\|Ga0187784_10169529	All Organisms → cellular organisms → Bacteria	1784	Open in IMG/M
3300018062\|Ga0187784_10268250	All Organisms → cellular organisms → Bacteria	1388	Open in IMG/M
3300018062\|Ga0187784_10794225	All Organisms → cellular organisms → Bacteria	755	Open in IMG/M
3300018062\|Ga0187784_11465313	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	541	Open in IMG/M
3300018064\|Ga0187773_10052219	All Organisms → cellular organisms → Bacteria → Acidobacteria	1885	Open in IMG/M
3300018085\|Ga0187772_10134087	All Organisms → cellular organisms → Bacteria → Acidobacteria	1626	Open in IMG/M
3300018086\|Ga0187769_10200848	All Organisms → cellular organisms → Bacteria	1475	Open in IMG/M
3300018086\|Ga0187769_11357505	Not Available	538	Open in IMG/M
3300018090\|Ga0187770_10080413	All Organisms → cellular organisms → Bacteria	2403	Open in IMG/M
3300019999\|Ga0193718_1068507	Not Available	760	Open in IMG/M
3300020580\|Ga0210403_10354856	Not Available	1200	Open in IMG/M
3300021181\|Ga0210388_10011530	All Organisms → cellular organisms → Bacteria	7049	Open in IMG/M
3300021401\|Ga0210393_10454282	Not Available	1046	Open in IMG/M
3300021403\|Ga0210397_11242636	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300021420\|Ga0210394_10198882	All Organisms → cellular organisms → Bacteria → Acidobacteria	1748	Open in IMG/M
3300021559\|Ga0210409_11607792	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	526	Open in IMG/M
3300021560\|Ga0126371_11942117	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	707	Open in IMG/M
3300026281\|Ga0209863_10059125	All Organisms → cellular organisms → Bacteria	1136	Open in IMG/M
3300026291\|Ga0209890_10066784	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1296	Open in IMG/M
3300027432\|Ga0209421_1062142	Not Available	749	Open in IMG/M
3300027590\|Ga0209116_1040872	All Organisms → cellular organisms → Bacteria	992	Open in IMG/M
3300027591\|Ga0209733_1089423	Not Available	784	Open in IMG/M
3300027609\|Ga0209221_1028793	Not Available	1479	Open in IMG/M
3300027609\|Ga0209221_1127388	All Organisms → cellular organisms → Bacteria → Acidobacteria	643	Open in IMG/M
3300027629\|Ga0209422_1088233	All Organisms → cellular organisms → Bacteria	722	Open in IMG/M
3300027635\|Ga0209625_1034119	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1133	Open in IMG/M
3300027824\|Ga0209040_10154621	All Organisms → cellular organisms → Bacteria	1234	Open in IMG/M
3300027855\|Ga0209693_10282771	Not Available	811	Open in IMG/M
3300027879\|Ga0209169_10108855	All Organisms → cellular organisms → Bacteria	1435	Open in IMG/M
3300027895\|Ga0209624_10046210	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2783	Open in IMG/M
3300027911\|Ga0209698_10451104	Not Available	1000	Open in IMG/M
3300027911\|Ga0209698_11368119	Not Available	516	Open in IMG/M
3300028047\|Ga0209526_10743253	Not Available	613	Open in IMG/M
3300028808\|Ga0302228_10060829	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1806	Open in IMG/M
3300028879\|Ga0302229_10068802	Not Available	1719	Open in IMG/M
3300029817\|Ga0247275_1137709	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300029944\|Ga0311352_11189017	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. L60	579	Open in IMG/M
3300029951\|Ga0311371_11047970	Not Available	963	Open in IMG/M
3300030054\|Ga0302182_10411563	Not Available	566	Open in IMG/M
3300030056\|Ga0302181_10022200	All Organisms → cellular organisms → Bacteria	3607	Open in IMG/M
3300031233\|Ga0302307_10385272	Not Available	713	Open in IMG/M
3300031715\|Ga0307476_11096733	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium F42-01	585	Open in IMG/M
3300031719\|Ga0306917_10086420	All Organisms → cellular organisms → Bacteria	2216	Open in IMG/M
3300031754\|Ga0307475_11154192	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M
3300031833\|Ga0310917_10942930	Not Available	580	Open in IMG/M
3300031837\|Ga0302315_10285416	Not Available	953	Open in IMG/M
3300031945\|Ga0310913_10176584	Not Available	1486	Open in IMG/M
3300031947\|Ga0310909_11461656	Not Available	545	Open in IMG/M
3300032160\|Ga0311301_12919423	Not Available	517	Open in IMG/M
3300032205\|Ga0307472_102477244	Not Available	527	Open in IMG/M
3300033158\|Ga0335077_10146060	All Organisms → cellular organisms → Bacteria	2720	Open in IMG/M
3300033289\|Ga0310914_10761935	Not Available	865	Open in IMG/M
3300034282\|Ga0370492_0283234	Not Available	673	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	73.45%
Aquatic	Environmental → Aquatic	26.55%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	66.37%
Freshwater	Environmental → Aquatic → Freshwater	21.24%
Peat	Environmental → Terrestrial → Peat	7.08%
Sediment	Environmental → Aquatic → Sediment	5.31%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	23.89%
Loam	Environmental → Terrestrial → Soil → Loam	23.89%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	21.24%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	18.58%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	7.08%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.31%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	21.24%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	18.58%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	16.81%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.39%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	11.50%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	7.08%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.31%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.65%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.77%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.77%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.89%

Habitat	Taxonomy	Distribution
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	15.04%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	14.16%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	8.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.85%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	7.08%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	7.08%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	6.19%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	5.31%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.42%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	3.54%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.54%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.65%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.65%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.77%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.77%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.89%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.89%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001087	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O3	Environmental	Open in IMG/M
3300001166	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2	Environmental	Open in IMG/M
3300001167	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003351	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009524	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG	Environmental	Open in IMG/M
3300009623	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10	Environmental	Open in IMG/M
3300009764	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_40	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300017939	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MG	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018003	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_40	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018035	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300019999	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a1	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300026281	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046 (SPAdes)	Environmental	Open in IMG/M
3300026291	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049 (SPAdes)	Environmental	Open in IMG/M
3300027432	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O2 (SPAdes)	Environmental	Open in IMG/M
3300027590	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O1 (SPAdes)	Environmental	Open in IMG/M
3300027591	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes)	Environmental	Open in IMG/M
3300027609	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027629	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M3 (SPAdes)	Environmental	Open in IMG/M
3300027635	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028808	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_2	Environmental	Open in IMG/M
3300028879	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_3	Environmental	Open in IMG/M
3300029817	Soil microbial communities from Marcell Experimental Forest, Minnesota, USA - Bog25	Environmental	Open in IMG/M
3300029944	II_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030054	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_1	Environmental	Open in IMG/M
3300030056	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_3	Environmental	Open in IMG/M
3300031233	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_2	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031837	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_1	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300034282	Peat soil microbial communities from wetlands in Alaska, United States - Eight_mile_03D_16	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12677J13195_10088281	3300001087	Forest Soil	MHGLKIVAFVVALVVACAAARVCRAQDRVTILYDAFGE
JGI12694J13545_10252262	3300001166	Forest Soil	VRIHVLKIVAFLLMCGAAVPCRAQDRVTILYDAFGESKELTKDWGFSA
JGI12673J13574_10050361	3300001167	Forest Soil	LRSYVLRILALVVVYGAAVPCRAQDKVTILYDAFGESKTLTKD
JGI12635J15846_101067352	3300001593	Forest Soil	LRSHVWRILILAFVLVCVTGVPSRAQDKVTILYDAFGESKTLTKDWGFS
JGIcombinedJ26739_1002557771	3300002245	Forest Soil	LRIHVLRILAFVLLWAAATPCRAQDKVTILYDAFGESAGL
JGIcombinedJ26739_1007922691	3300002245	Forest Soil	LRSYVLRILALVVVYGAAVPCRAQDKVTILYDAFGESKTLTKDWGFSAL
JGIcombinedJ26739_1016304152	3300002245	Forest Soil	VRIHVLKIVAFLLMCGAAVPCRAQDRVTILYDAFGESKELTKDWGFSAF
JGI26346J50198_10223051	3300003351	Bog Forest Soil	LRIHVLRILVFLLVCVATVPCGAQDKVTTLYDAFGESKGLTKDWGYSA
Ga0062385_104098062	3300004080	Bog Forest Soil	LRIHAFRILTFLLVYVAAVPCRAQDKVTILYDAFGESKEL
Ga0062384_1004890352	3300004082	Bog Forest Soil	LRVHVLRILAFLLVYVAAVHCRAQDKVTILYDAFGESKEL
Ga0062387_1000676601	3300004091	Bog Forest Soil	LRIHALRILTFLLVYVAAVPCRAQDKVTILYDAFGESKELTKDWGFSA
Ga0062387_1001764442	3300004091	Bog Forest Soil	VRIHAMRVLTLLLLYVAALPCRAQDKVTILYDAFGESKEL
Ga0062389_1046626802	3300004092	Bog Forest Soil	LRIHILLILAFVLVCAAAIPCRAQDKVTILYDAFGESAQLTKDWGFSALV
Ga0070713_1002219551	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	LRVHVLRILVFLLVCVAVVRCRAQDKVTILYDAFGESKELTKDWGYSALV
Ga0070761_107506051	3300005591	Soil	MRIHPLRILTFLLLYVAAVPCRAQDKVTILYDAFGESKELTKDWGFSA
Ga0070762_111779931	3300005602	Soil	LRVHILRILAFLLACAAAVPCRAQDKVTILYDAFGESKEL
Ga0070766_105301203	3300005921	Soil	LRIRVLTILTFLLLYAAAVPCRAQDRVTILYDAFGESKEL
Ga0070766_112156372	3300005921	Soil	LRIHILRILAFALLCAAAVPCRAQDKVTILYDAFGESKEL
Ga0075028_1008411301	3300006050	Watersheds	LRVHALRILAFLLVYVAAVPCGAQDKVTILYDAFGES
Ga0075017_1000973511	3300006059	Watersheds	MFLLVYVAAVPCRAQDKVTILYDAFGESKELTKDWGF
Ga0075017_1013129192	3300006059	Watersheds	LRIHALRILTFLLVYVAAVPCLAQDKVTILYDAFGESKELTKDWGFSAFV
Ga0075019_101616041	3300006086	Watersheds	LRIHILRILAFLLVCASAVLCGAQDKVTILYDAFGESKEL
Ga0070715_107862351	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	LRIYVLRILAFTLLCMVAVPCRAQDKVTILYDAIGESKQLTKDWGFSAL
Ga0070712_1005779712	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	LRVHVLRILAFLMMCVAALPCRAQDKVTILYDAFG
Ga0070765_1003018831	3300006176	Soil	VRIHVLRIIAILLVLLCLAAGPCRAQDKVTILYDAFGESKQLT
Ga0070765_1016732332	3300006176	Soil	LRIHALRVLTFLLVCVAAVPCRAQDKVTILYDAFGESKELTKDWG
Ga0116225_13025162	3300009524	Peatlands Soil	LRVHFLRILACAWLCAAAVPCRAQDRVTILYDAFGEAKDLT
Ga0116133_11236302	3300009623	Peatland	LRIHALRILTFLLVCMAAVPCRAQDKVTILYDAFG
Ga0116134_10415192	3300009764	Peatland	LRIHGLRILAFLLVYVAAVPCRAQDRVTILYDAFGESKELTKDWGFSA
Ga0126374_102671381	3300009792	Tropical Forest Soil	MRIHALRILTFLLVGVAAVPCRAQDKVTILYDAFG
Ga0116223_108064071	3300009839	Peatlands Soil	LRIHVLRILAFLLVCVAAVPCRAQDKVTILYDAFGES
Ga0126378_105334591	3300010361	Tropical Forest Soil	LTFLLLGVAAGPCQAQDKVTILYDAFGESKELTKDWGFSAF
Ga0126381_1000918463	3300010376	Tropical Forest Soil	LTFLLVGVAAVPCRAQHKVTILYDAFGESKELTKDWGFSAFVEH
Ga0126381_1006661053	3300010376	Tropical Forest Soil	LTFLLVCVAALPCRAQDKVTILYDAFGESKELTKDWGFSAFVEH
Ga0136449_1009912133	3300010379	Peatlands Soil	LAFLLVYVAAVPCRAQDKVTILYDAFGESKELTKDWG
Ga0137392_114261351	3300011269	Vadose Zone Soil	MLLLVYVAAVPCRAQDKVTILYDAFGESKELTKDWGFSA
Ga0137389_112087171	3300012096	Vadose Zone Soil	LRILAFLLVCVAAVPCGAQDKVTILYDAFGESKELTKDWGYSAFVE
Ga0181518_101001982	3300014156	Bog	LTFLLVYVAAVPCRAQDKVTILYDAFGESKELTKDWGYSAL
Ga0181537_110419611	3300014201	Bog	LRIYIFRILAFLLLYAAAIPCRAQDKVTILYDAFGESKELTKDWGFSAL
Ga0181525_102400462	3300014654	Bog	LRILAFLLVYVAAVPCRAQDKVTILYDAFGESKELTKDWGFSAFVEHN
Ga0181522_101604633	3300014657	Bog	LRIHALRILTFLLVYVAAVPCRAQDKVTILYDAFGES
Ga0187775_100271861	3300017939	Tropical Peatland	MRKIDFLPILAFVLLCVAAFPCRAQDKVTILYDAFGESKE
Ga0187819_106217412	3300017943	Freshwater Sediment	MKQFSGVFLQILALALVCFAAVPCRAQDRVTILYDAFGDSKQLNK
Ga0187879_108404552	3300017946	Peatland	VRIHALRIIAILLVLLCLAAVPCRAQDKVTILYDAFGESKQLTRDWG
Ga0187783_103469381	3300017970	Tropical Peatland	LRIHALRILTFLLVSVAAGPCRAQDKVTILYDAFGESKELTKDWGFSTF
Ga0187781_107756091	3300017972	Tropical Peatland	LRIHALRILTFLLVCVAAVPCRAQDKVTILYDAFGESKELT
Ga0187781_111224242	3300017972	Tropical Peatland	LRIHALRMLTFLLVCVAAVPCRAQDKVTILYDAFGESKELTKDWGFS
Ga0187780_100178991	3300017973	Tropical Peatland	LRIHALRILTFLLVCVAAVPCRAQDKVTILYDAFGESKELTK
Ga0187780_102213441	3300017973	Tropical Peatland	LRILTFLLVCVAAVPCRAQDKVTILYDAFGESKELTK
Ga0187782_107081962	3300017975	Tropical Peatland	MRKVDVLLTLAFLLVCVAAVPCRAQDKVTILYDAFG
Ga0187782_108861042	3300017975	Tropical Peatland	LTFLLVCVAAVPCRAQDKVTILYDAFGESKELTKDWGFSALV
Ga0187876_11575622	3300018003	Peatland	LRIHVLRILVFLLACVAAVPCGAQDKVTILYDAFGESKELTKDWGY
Ga0187863_102312502	3300018034	Peatland	LRIHALRILTFLLVFVAAVPCRAQDKVTILYDAFGES
Ga0187875_100886932	3300018035	Peatland	LRIHALRILTFLLVFVAAVPCRAQDKVTILYDAFGESKELTKDWGFSAF
Ga0187862_103792071	3300018040	Peatland	LRIYALRILTFLLVCVAAVPCRAQDKVTILYDAFG
Ga0187871_102183351	3300018042	Peatland	LRIHALRILTFLLCMAAVPCRAQDKVTILYDAFGESKELTKDWG
Ga0187887_102127001	3300018043	Peatland	LRIHVLRILAFLLACVAAVPCRAQDKVTILYDAFGESKELTKDWGF
Ga0187859_100934371	3300018047	Peatland	LRIHALRILTFLLVYVAAVPCRAQDKLTILYDAFGESKVLTKD
Ga0187859_102184503	3300018047	Peatland	MFLLACVAAVPCGAQDKVTTLYDAFGESKELTKDW
Ga0187858_107137051	3300018057	Peatland	LRIHALRILTFLLVFVAAIPCRAQDKVTILYDAFGESTELTKDWGYSAL
Ga0187784_101695292	3300018062	Tropical Peatland	LRSHVLRVLTVLLVYVAAVPCRAQDKVTILYDAFGE
Ga0187784_102682503	3300018062	Tropical Peatland	MMKVDVLLTLAFLLVCVAAVPCRAQDKVTILYDAFGES
Ga0187784_107942251	3300018062	Tropical Peatland	LRIHALRILTFLLVCVAAVPCWAQDKVTILYDAFGESKKLTKDWGFSAFVEHN
Ga0187784_114653132	3300018062	Tropical Peatland	LRIRGLPFLAFVLLCAAAIPCPAQDKVTILYDAFGESAQLT
Ga0187773_100522191	3300018064	Tropical Peatland	MRKIDVLRILSFVLVCVAAVPCRAQDKVTILYDAFGESKELTKDWGFSALV
Ga0187772_101340871	3300018085	Tropical Peatland	MRLHVVLIFTLTLMSLAAIPSRAQDRVTILYDAFGESKELTKDWGF
Ga0187769_102008483	3300018086	Tropical Peatland	LRIHALRILTFLLVCVAAVPSWAQDNVAQDKVTILYDAFGESK
Ga0187769_113575052	3300018086	Tropical Peatland	MRIHVLRILALVLVCVAAGPCWAQDKVTILYDAFGESK
Ga0187770_100804134	3300018090	Tropical Peatland	LRIHALRILTFLLVCVAAVPSWAQDNVAQDKVTILYDAFGESKELTKDWGFS
Ga0193718_10685072	3300019999	Soil	LRIHVLRILAFLLVCVAAVPCGAQDKVTILYDAFGESKELTKDWGYSAL
Ga0210403_103548562	3300020580	Soil	LRIHVLRILAFLLLYVAAVPCRAQDKVTILYDAFGESKELTK
Ga0210388_1001153010	3300021181	Soil	PLRIHALRILTFLLVYVAALPCRAQDKVAILYDAFGESKGLTQPPKTVPPTM
Ga0210393_104542821	3300021401	Soil	LRIHVLRILVFLLACVAAVPCGAQDKVTILYDAFGESKELT
Ga0210397_112426361	3300021403	Soil	LRISVLRILALVLVCVAAIPCRGQDKVTILFDAFGESAGLT
Ga0210394_101988823	3300021420	Soil	VGSFALKIAAFVLVCLAALPCRAQDRVTILYDAFGQSKELTKDWGFSA
Ga0210409_116077921	3300021559	Soil	LRIHVLRVLAFLVVCVAAVPCRAQDKVTILYDAFGESKELTKDW
Ga0126371_119421171	3300021560	Tropical Forest Soil	MRIRALRILTFLLVCVAAVPCRAQDKVTILYDAFGESNELTKDWGFSAF
Ga0209863_100591252	3300026281	Prmafrost Soil	LRVHVLRILAFALVWVAAVPCRAQDKVTILYDAFGESKDLT
Ga0209890_100667841	3300026291	Soil	LRVHVLRILAFLLVCVVVVPCRAQDKVTILYDAFGESKEL
Ga0209421_10621421	3300027432	Forest Soil	VRIHVLRIISILLVLLCLAAVPCPAQDKVTILYDA
Ga0209116_10408721	3300027590	Forest Soil	LRIHVLRILAFVLVWAAATPCRAQDKVTILYDAFGESAELTKDWGS
Ga0209733_10894231	3300027591	Forest Soil	LRIHVLRVLAFLLVCAAAVPCGAQDKVTILYDAFGESKEL
Ga0209221_10287933	3300027609	Forest Soil	LRVQGLRILAFLLVCVAAIPCRAQDKVTVLYDAFGESKELT
Ga0209221_11273882	3300027609	Forest Soil	LRVHGLRILAFLLVCVAAVSCRAQDKVTILYDAFGESKE
Ga0209422_10882332	3300027629	Forest Soil	LRTHVLRMLAFVLVYVAAVPCRAQDKVTILYDAFGESKTLTKDWGFSALI
Ga0209625_10341193	3300027635	Forest Soil	LRIHVLRILSFVLVCLAAIPCRAQDKVTILYDAFGE
Ga0209040_101546211	3300027824	Bog Forest Soil	LRVHVLRILAFLLVWVAAVPCRAQDKVTILYDAFGESKELTKDWGFSAL
Ga0209693_102827712	3300027855	Soil	MRINIRRILIFLLIGAAAIPCPALDKVTILYDAFGESNQLTKDWGFSA
Ga0209169_101088551	3300027879	Soil	LRIHVLRVLAFLLVCVAAVPCRAQDKVTILYDAFGESKEL
Ga0209624_100462101	3300027895	Forest Soil	MRIHALRILTFLLVYVAAVPCLAQDKVTILYDAFGESKELTKDWGFSAL
Ga0209698_104511043	3300027911	Watersheds	LRVHALRILAFLLVYVAAVPCGAQDKVTILYDAFGESKELTK
Ga0209698_113681191	3300027911	Watersheds	LRIHALRILTFLLLYVAAVPCRAQDKVTILYDAFGESKELTK
Ga0209526_107432531	3300028047	Forest Soil	LRSYILRILAFALMYVVAVPCRAQDKVTILYDAFGDSKTLTKDW
Ga0302228_100608291	3300028808	Palsa	LRILAFWLVCVAAVPCRAQDRVTILYDAFGESKELTKDWGYSAL
Ga0302229_100688022	3300028879	Palsa	VRIHVLRIVAILLVLLCLAAVPCRAQDKVTILYDAFGESKQLTK
Ga0247275_11377091	3300029817	Soil	LRIHVLRILAFLLVCVAAVPCRAQDKVTILYDAFGESKE
Ga0311352_111890172	3300029944	Palsa	MHVLKIVAFVLACAVAGPCRAQDKVTILYDAFGESKELTKDW
Ga0311371_110479702	3300029951	Palsa	MHVLKIVAFVLACAVAGPCRAQDKVTILYDAFGDS
Ga0302182_104115632	3300030054	Palsa	LRIHALKILAFLLVYVAAVPCGAQDKVTILYDAFGESKELTKDW
Ga0302181_100222001	3300030056	Palsa	VRIHVLRIIGILLVLLCLAAVPCRAQDKVTILYDA
Ga0302307_103852722	3300031233	Palsa	VRIHVLRIISILLVLLCLAAVPCPAQDKVTILYDAFGESKELTKDW
Ga0307476_110967331	3300031715	Hardwood Forest Soil	LRFHVVLRILAFALLCVAAVPCRAQDKVTILYDAFGESKELTKDWG
Ga0306917_100864201	3300031719	Soil	LRIHVLRVLAFVLACVAAAPCRAQDKVTILYDAFGESKELTKDWGF
Ga0307475_111541921	3300031754	Hardwood Forest Soil	LRIYVLRILAFTLLCMVAVPCRAQDKVTILYDAIGESKQLTKDWGFSALVEHD
Ga0310917_109429302	3300031833	Soil	LRIQVLLILAFVLVCAAAIPCQAQDKVTILYDAFGESKELTK
Ga0302315_102854162	3300031837	Palsa	MHVLKIVAFVLACAVAGPCRAQDKVTILYDAFGESKELTKDWG
Ga0310913_101765841	3300031945	Soil	LRNHVLRILALLCVAVVPCRAHDKVTVLYDAFGESKELTED
Ga0310909_114616561	3300031947	Soil	LRIHVLWILKFVLLGMVTVPCRAQDKVTILYDAFGESKELTKDWGFSAL
Ga0311301_129194231	3300032160	Peatlands Soil	LRIHVLRILAFLLVCVAAVPCRAQDKVTILYDAFGESKELTKDWGFS
Ga0307472_1024772441	3300032205	Hardwood Forest Soil	MKQFSDVFLGILAFALMCVAAVPCGAQDKVTIIYDAFGESKELTKDWG
Ga0335077_101460604	3300033158	Soil	VRTPLLRIVAVFFFCAAALPCLAQDRITILYDAFGDSKDLT
Ga0310914_107619351	3300033289	Soil	LRIQVLRTLAFVLVCAAAIPCQAQDKVTILYDAFGESAQLTKDWGFSAL
Ga0370492_0283234_524_673	3300034282	Untreated Peat Soil	MRAHGLQVLAFLLVCVAAVPCRAQDKVTVLYDAFGESKELTKDWGFSALV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F083298

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences