NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F083292

Metagenome / Metatranscriptome Family F083292

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F083292
Family Type Metagenome / Metatranscriptome
Number of Sequences 113
Average Sequence Length 43 residues
Representative Sequence EYELTRWLRLRTNVLQGSSTQQQLFQRMQGSGVDLLFFFSY
Number of Associated Samples 101
Number of Associated Scaffolds 113

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 100.00 %
% of genes from short scaffolds (< 2000 bps) 94.69 %
Associated GOLD sequencing projects 94
AlphaFold2 3D model prediction Yes
3D model pTM-score0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (96.460 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere
(8.850 % of family members)
Environment Ontology (ENVO) Unclassified
(40.708 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(58.407 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 56.52%    β-sheet: 0.00%    Coil/Unstructured: 43.48%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.32
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 113 Family Scaffolds
PF01568Molydop_binding 70.80
PF00929RNase_T 3.54
PF01161PBP 2.65
PF00465Fe-ADH 0.88
PF07681DoxX 0.88
PF01850PIN 0.88
PF01019G_glu_transpept 0.88
PF12146Hydrolase_4 0.88
PF02537CRCB 0.88
PF06039Mqo 0.88
PF03551PadR 0.88
PF04972BON 0.88
PF00499Oxidored_q3 0.88
PF00573Ribosomal_L4 0.88
PF04357TamB 0.88
PF07992Pyr_redox_2 0.88
PF00936BMC 0.88
PF135322OG-FeII_Oxy_2 0.88

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 113 Family Scaffolds
COG1881Uncharacterized conserved protein, phosphatidylethanolamine-binding protein (PEBP) familyGeneral function prediction only [R] 2.65
COG0088Ribosomal protein L4Translation, ribosomal structure and biogenesis [J] 0.88
COG0239Fluoride ion exporter CrcB/FEX, affects chromosome condensationCell cycle control, cell division, chromosome partitioning [D] 0.88
COG03373-dehydroquinate synthetaseAmino acid transport and metabolism [E] 0.88
COG0371Glycerol dehydrogenase or related enzyme, iron-containing ADH familyEnergy production and conversion [C] 0.88
COG0405Gamma-glutamyltranspeptidaseAmino acid transport and metabolism [E] 0.88
COG0579L-2-hydroxyglutarate oxidase LhgOCarbohydrate transport and metabolism [G] 0.88
COG0839NADH:ubiquinone oxidoreductase subunit 6 (chain J)Energy production and conversion [C] 0.88
COG1454Alcohol dehydrogenase, class IVEnergy production and conversion [C] 0.88
COG1695DNA-binding transcriptional regulator, PadR familyTranscription [K] 0.88
COG1733DNA-binding transcriptional regulator, HxlR familyTranscription [K] 0.88
COG1846DNA-binding transcriptional regulator, MarR familyTranscription [K] 0.88
COG1979Alcohol dehydrogenase YqhD, Fe-dependent ADH familyEnergy production and conversion [C] 0.88
COG2259Uncharacterized membrane protein YphA, DoxX/SURF4 familyFunction unknown [S] 0.88
COG2911Phospholipid transport to the outer membrane protein TamBCell wall/membrane/envelope biogenesis [M] 0.88
COG4270Uncharacterized membrane proteinFunction unknown [S] 0.88


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms96.46 %
UnclassifiedrootN/A3.54 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300004156|Ga0062589_101632408All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium640Open in IMG/M
3300004157|Ga0062590_102398826All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium557Open in IMG/M
3300004463|Ga0063356_103559128All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium671Open in IMG/M
3300004479|Ga0062595_101399711Not Available637Open in IMG/M
3300005172|Ga0066683_10180566All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1301Open in IMG/M
3300005187|Ga0066675_10592086All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium833Open in IMG/M
3300005334|Ga0068869_100653985All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium892Open in IMG/M
3300005335|Ga0070666_10018039All Organisms → cellular organisms → Bacteria4531Open in IMG/M
3300005335|Ga0070666_11134925All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium581Open in IMG/M
3300005353|Ga0070669_101444344All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium597Open in IMG/M
3300005355|Ga0070671_100902738All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium772Open in IMG/M
3300005456|Ga0070678_102198288All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium523Open in IMG/M
3300005457|Ga0070662_100246423All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1435Open in IMG/M
3300005529|Ga0070741_11638332All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium526Open in IMG/M
3300005540|Ga0066697_10806999All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium510Open in IMG/M
3300005548|Ga0070665_102521390All Organisms → cellular organisms → Bacteria → Acidobacteria516Open in IMG/M
3300005552|Ga0066701_10098400All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1705Open in IMG/M
3300005576|Ga0066708_10064482All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2089Open in IMG/M
3300005615|Ga0070702_100633687All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium806Open in IMG/M
3300005617|Ga0068859_102803425All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium535Open in IMG/M
3300005719|Ga0068861_102118492All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium562Open in IMG/M
3300005764|Ga0066903_103979063All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium792Open in IMG/M
3300005834|Ga0068851_10837933All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium573Open in IMG/M
3300005843|Ga0068860_100506336All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1206Open in IMG/M
3300006046|Ga0066652_100589369All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1047Open in IMG/M
3300006163|Ga0070715_10910995All Organisms → cellular organisms → Bacteria542Open in IMG/M
3300006163|Ga0070715_10915101All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium541Open in IMG/M
3300006581|Ga0074048_13290189All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1643Open in IMG/M
3300006852|Ga0075433_10793582All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium827Open in IMG/M
3300006852|Ga0075433_11950204All Organisms → cellular organisms → Bacteria → Acidobacteria503Open in IMG/M
3300006854|Ga0075425_101313848All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium820Open in IMG/M
3300006871|Ga0075434_101193279All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium773Open in IMG/M
3300006871|Ga0075434_102263964All Organisms → cellular organisms → Bacteria547Open in IMG/M
3300006871|Ga0075434_102388302All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium531Open in IMG/M
3300006904|Ga0075424_101988976Not Available613Open in IMG/M
3300006954|Ga0079219_10420636All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium896Open in IMG/M
3300009012|Ga0066710_100947336All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1327Open in IMG/M
3300009137|Ga0066709_103297034All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium587Open in IMG/M
3300009156|Ga0111538_13753565All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium526Open in IMG/M
3300009162|Ga0075423_13130874All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium507Open in IMG/M
3300009176|Ga0105242_11769375All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium656Open in IMG/M
3300009176|Ga0105242_12276647All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium588Open in IMG/M
3300009177|Ga0105248_11126066All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium887Open in IMG/M
3300009551|Ga0105238_10933434All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium887Open in IMG/M
3300009553|Ga0105249_12455772All Organisms → cellular organisms → Bacteria → Acidobacteria594Open in IMG/M
3300010362|Ga0126377_10372932All Organisms → cellular organisms → Bacteria → Acidobacteria1430Open in IMG/M
3300010366|Ga0126379_11038789Not Available925Open in IMG/M
3300010371|Ga0134125_12480319All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium564Open in IMG/M
3300010398|Ga0126383_11405418All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium788Open in IMG/M
3300010401|Ga0134121_10298672All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1425Open in IMG/M
3300011119|Ga0105246_12222564All Organisms → cellular organisms → Bacteria → Acidobacteria534Open in IMG/M
3300012208|Ga0137376_11418563All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium585Open in IMG/M
3300012212|Ga0150985_106471443All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium647Open in IMG/M
3300012212|Ga0150985_111457755All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium565Open in IMG/M
3300012212|Ga0150985_112794371All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium992Open in IMG/M
3300012212|Ga0150985_121531749All Organisms → cellular organisms → Bacteria1222Open in IMG/M
3300012356|Ga0137371_10301694All Organisms → cellular organisms → Bacteria1247Open in IMG/M
3300012469|Ga0150984_106091098All Organisms → cellular organisms → Bacteria762Open in IMG/M
3300012906|Ga0157295_10140688All Organisms → cellular organisms → Bacteria712Open in IMG/M
3300012924|Ga0137413_11260294All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium592Open in IMG/M
3300012948|Ga0126375_11029246All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium673Open in IMG/M
3300012961|Ga0164302_10860636All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium691Open in IMG/M
3300013297|Ga0157378_12083131All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium618Open in IMG/M
3300013306|Ga0163162_13001615All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium542Open in IMG/M
3300013307|Ga0157372_13471255All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium501Open in IMG/M
3300013308|Ga0157375_10673047All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1190Open in IMG/M
3300013308|Ga0157375_13562610All Organisms → cellular organisms → Bacteria518Open in IMG/M
3300014157|Ga0134078_10173972All Organisms → cellular organisms → Bacteria → Acidobacteria862Open in IMG/M
3300015372|Ga0132256_101017160All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium944Open in IMG/M
3300018060|Ga0187765_10210148All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1129Open in IMG/M
3300018067|Ga0184611_1270894All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium596Open in IMG/M
3300018073|Ga0184624_10510426All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium522Open in IMG/M
3300018422|Ga0190265_10726163All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1115Open in IMG/M
3300018476|Ga0190274_12206406All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes648Open in IMG/M
3300019362|Ga0173479_10266932Not Available762Open in IMG/M
3300022713|Ga0242677_1068406All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium553Open in IMG/M
3300023073|Ga0247744_1070712All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium595Open in IMG/M
3300025893|Ga0207682_10348808All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium697Open in IMG/M
3300025899|Ga0207642_10065565All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1707Open in IMG/M
3300025905|Ga0207685_10097299All Organisms → cellular organisms → Bacteria1252Open in IMG/M
3300025923|Ga0207681_11289439All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium613Open in IMG/M
3300025924|Ga0207694_10962766All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium722Open in IMG/M
3300025925|Ga0207650_11462514All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium581Open in IMG/M
3300025930|Ga0207701_11642067All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium516Open in IMG/M
3300025932|Ga0207690_10529826All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium956Open in IMG/M
3300025936|Ga0207670_10200026All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1517Open in IMG/M
3300025942|Ga0207689_10505825All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1012Open in IMG/M
3300025960|Ga0207651_11177605All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium688Open in IMG/M
3300025972|Ga0207668_11083704All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium718Open in IMG/M
3300025986|Ga0207658_11596960All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium596Open in IMG/M
3300026035|Ga0207703_10508849All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1131Open in IMG/M
3300026118|Ga0207675_101979584All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium600Open in IMG/M
3300026301|Ga0209238_1146620All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium729Open in IMG/M
3300026523|Ga0209808_1043236All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2098Open in IMG/M
3300027910|Ga0209583_10393392All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium658Open in IMG/M
3300028380|Ga0268265_11585453All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium659Open in IMG/M
3300028381|Ga0268264_10137845All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2172Open in IMG/M
3300028381|Ga0268264_10678933All Organisms → cellular organisms → Bacteria → Acidobacteria1021Open in IMG/M
3300028381|Ga0268264_11762145All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium629Open in IMG/M
3300028803|Ga0307281_10224435All Organisms → cellular organisms → Bacteria683Open in IMG/M
3300031226|Ga0307497_10265560All Organisms → cellular organisms → Bacteria773Open in IMG/M
3300031366|Ga0307506_10410065All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium557Open in IMG/M
3300031716|Ga0310813_11843076All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium569Open in IMG/M
3300031740|Ga0307468_102436964All Organisms → cellular organisms → Bacteria → Acidobacteria511Open in IMG/M
3300031751|Ga0318494_10424226All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium773Open in IMG/M
3300031764|Ga0318535_10114180All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1190Open in IMG/M
3300031846|Ga0318512_10586320All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium568Open in IMG/M
3300031847|Ga0310907_10024426All Organisms → cellular organisms → Bacteria → Acidobacteria2098Open in IMG/M
3300031858|Ga0310892_10964481All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium599Open in IMG/M
3300032059|Ga0318533_10387055All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1020Open in IMG/M
3300032076|Ga0306924_10270431All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1952Open in IMG/M
3300032180|Ga0307471_100065254All Organisms → cellular organisms → Bacteria3103Open in IMG/M
3300034149|Ga0364929_0322870All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium531Open in IMG/M



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere8.85%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil7.96%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere7.96%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere7.96%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil6.19%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil4.42%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil3.54%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere3.54%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere3.54%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil2.65%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil2.65%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil2.65%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere2.65%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere2.65%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere2.65%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment1.77%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.77%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.77%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil1.77%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.77%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.77%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere1.77%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.89%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.89%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil0.89%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil0.89%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.89%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.89%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere0.89%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.89%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland0.89%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.89%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.89%
SedimentEnvironmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment0.89%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.89%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere0.89%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.89%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere0.89%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.89%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.89%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.89%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere0.89%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300004156Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1EnvironmentalOpen in IMG/M
3300004157Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2EnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300005172Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132EnvironmentalOpen in IMG/M
3300005187Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124EnvironmentalOpen in IMG/M
3300005334Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2Host-AssociatedOpen in IMG/M
3300005335Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaGHost-AssociatedOpen in IMG/M
3300005353Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaGHost-AssociatedOpen in IMG/M
3300005355Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaGHost-AssociatedOpen in IMG/M
3300005456Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaGHost-AssociatedOpen in IMG/M
3300005457Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaGHost-AssociatedOpen in IMG/M
3300005529Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1EnvironmentalOpen in IMG/M
3300005540Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146EnvironmentalOpen in IMG/M
3300005548Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaGHost-AssociatedOpen in IMG/M
3300005552Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150EnvironmentalOpen in IMG/M
3300005576Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157EnvironmentalOpen in IMG/M
3300005615Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaGEnvironmentalOpen in IMG/M
3300005617Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2Host-AssociatedOpen in IMG/M
3300005719Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2Host-AssociatedOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005834Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2Host-AssociatedOpen in IMG/M
3300005843Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2Host-AssociatedOpen in IMG/M
3300006046Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101EnvironmentalOpen in IMG/M
3300006163Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaGEnvironmentalOpen in IMG/M
3300006581Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006852Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2Host-AssociatedOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300006904Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3Host-AssociatedOpen in IMG/M
3300006954Agricultural soil microbial communities from Georgia to study Nitrogen management - GA ControlEnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009156Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300009176Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaGHost-AssociatedOpen in IMG/M
3300009177Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaGHost-AssociatedOpen in IMG/M
3300009551Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaGHost-AssociatedOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010371Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300010401Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1EnvironmentalOpen in IMG/M
3300011119Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaGHost-AssociatedOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012212Combined assembly of Hopland grassland soilHost-AssociatedOpen in IMG/M
3300012356Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012469Combined assembly of Soil carbon rhizosphereHost-AssociatedOpen in IMG/M
3300012906Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1EnvironmentalOpen in IMG/M
3300012924Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012948Tropical forest soil microbial communities from Panama - MetaG Plot_14EnvironmentalOpen in IMG/M
3300012961Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MGEnvironmentalOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300013306Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaGHost-AssociatedOpen in IMG/M
3300013307Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaGHost-AssociatedOpen in IMG/M
3300013308Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaGHost-AssociatedOpen in IMG/M
3300014157Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300018060Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MGEnvironmentalOpen in IMG/M
3300018067Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coexEnvironmentalOpen in IMG/M
3300018073Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1EnvironmentalOpen in IMG/M
3300018422Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 TEnvironmentalOpen in IMG/M
3300018476Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 TEnvironmentalOpen in IMG/M
3300019362Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)EnvironmentalOpen in IMG/M
3300022713Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300023073Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S154-409C-5EnvironmentalOpen in IMG/M
3300025893Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025899Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025905Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025923Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025924Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025925Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025930Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)EnvironmentalOpen in IMG/M
3300025932Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025936Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025942Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025960Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025972Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025986Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026035Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026118Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026301Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026523Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes)EnvironmentalOpen in IMG/M
3300027910Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)EnvironmentalOpen in IMG/M
3300028380Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028381Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028803Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120EnvironmentalOpen in IMG/M
3300031226Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_SEnvironmentalOpen in IMG/M
3300031366Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 25_SEnvironmentalOpen in IMG/M
3300031716Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3EnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031751Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24EnvironmentalOpen in IMG/M
3300031764Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27EnvironmentalOpen in IMG/M
3300031846Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19EnvironmentalOpen in IMG/M
3300031847Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4EnvironmentalOpen in IMG/M
3300031858Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2EnvironmentalOpen in IMG/M
3300032059Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27EnvironmentalOpen in IMG/M
3300032076Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300034149Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0062589_10163240813300004156SoilELTRWLRFRTKIVQGSFTQPQMFQKIETSGVDLLFFFSY*
Ga0062590_10239882623300004157SoilGQTNLILEYELTNWLRLRTNMIQGNATQQSLFQRNQGSGVDLLFFFSY*
Ga0063356_10355912823300004463Arabidopsis Thaliana RhizosphereQTNLILEYELTRWLRLRTNVLQGSPSQASMFQRAQGSGADLLFFFSY*
Ga0062595_10139971113300004479SoilYELTKWLRFRTNVMQGSSTQTQLFQRQPGSGADLLFFFGY*
Ga0066683_1018056613300005172SoilILEYELTKWLRFQTNLLQGSSTQQSIFQRAQGSGFNLLFFFSY*
Ga0066675_1059208613300005187SoilNFILEYELTKWLRLRTNVLQGSSTQASLFQRQQGSGADLLFFFSY*
Ga0068869_10065398513300005334Miscanthus RhizosphereNFIVEYELTRWLRFRTKIVQGSFTQPQMFQKIETSGVDLLFFFSY*
Ga0070666_1001803913300005335Switchgrass RhizosphereETNFILEYELTRWLRLRTNMLQGSGTQQQLFQRAQGSGADLLFFFSY*
Ga0070666_1113492523300005335Switchgrass RhizosphereTNFILEYELTNWLRFRTNVLQGSSAQAQMFRRMQGSGADLLFFFSY*
Ga0070669_10144434423300005353Switchgrass RhizosphereLEYELAKWLRLRTNWLQGSTTQPMIFQRTQDSGLDLLFFFTR*
Ga0070671_10090273813300005355Switchgrass RhizosphereEYELTKWLRLRTNVLQGSTTQANLFQRQQGSGADLLFFFSY*
Ga0070678_10219828813300005456Miscanthus RhizosphereNETNFILEYELTRWLRLRTNMLQGSGTQQQLFQRAQGSGADLLFFFSY*
Ga0070662_10024642323300005457Corn RhizosphereLEYELTRWLRLRTNVLQGTPNQSSVFQRLQGSGADLLFFFSY*
Ga0070741_1163833213300005529Surface SoilTKWLRLRTNVLQGSSTQAQLFQRMQGSGVDLLFFFSY*
Ga0066697_1080699923300005540SoilTKWLRLRTNVLQGSSTQMNLFQRQQGSGADLLFFFSY*
Ga0070665_10252139013300005548Switchgrass RhizosphereEYELTRWLRLRTNVLQGTANQRSVFQRAQGSGVDLLFFFTY*
Ga0066701_1009840013300005552SoilLTKWLRLRTNVLQGSSTQQQLFQRLQGSGADLLFFFNY*
Ga0066708_1006448213300005576SoilLEYELTKWLRLRTNVLQGSSTQASLFQRQQGSGADLLFFFSY*
Ga0070702_10063368723300005615Corn, Switchgrass And Miscanthus RhizosphereELATWLRLQTNVMQSSSTQQQLFQRMQGSGVDLLFFFSY*
Ga0068859_10280342513300005617Switchgrass RhizosphereYELTNWLRLQTNVLQGSNTQQMLFQRAHGTGIDLLFFFSY*
Ga0068861_10211849223300005719Switchgrass RhizosphereLILEYELTNWLRLRTNVIQGNATQQSLFQRAQGSGLDLLFFFSY*
Ga0066903_10397906313300005764Tropical Forest SoilLRFRTNVLQGSPSQTQLFQRSQSTGLDLLFFFSY*
Ga0068851_1083793323300005834Corn RhizosphereVNQTNLILEYELTKWLRLRTNVLQGSTTQANLFQRQQGSGADLLFFFSY*
Ga0068860_10050633613300005843Switchgrass RhizosphereSQTNFILEYELTRWLRLRSNVLQGSSNQQLLFQRAQGSGADLLFFFSY*
Ga0066652_10058936913300006046SoilSQTNFIVEYELARWVRLQTNVVQGSSTQQQLFQRAQGSGVDLLFFFSY*
Ga0070715_1091099523300006163Corn, Switchgrass And Miscanthus RhizosphereAKWLRLRTNWLQGSNAQPLLFQKTQDSGVDLLFTFTH*
Ga0070715_1091510123300006163Corn, Switchgrass And Miscanthus RhizosphereQTNFILEYELAKWLRLRTNVLQGSSTQASLFQRQQGSGADLLFFFSY*
Ga0074048_1329018923300006581SoilFEYELTRWLRLRTNVLQGSATQQVQFQRVQGSGADLLFFFSY*
Ga0075433_1079358213300006852Populus RhizosphereKWLRLQTNVLQGASTQQNVFQRMQASGADLLFFFSY*
Ga0075433_1195020413300006852Populus RhizosphereNFIMEYELSKWLRFRTNVLQGSSTQTQLFQRQAGSGADLLFFFGF*
Ga0075425_10131384813300006854Populus RhizosphereLQKWLRLRTNVIQGSSTQQQLFQRVQGSGVDLLFFFSY*
Ga0075434_10119327923300006871Populus RhizosphereILEYELTKWLRFRTNVLEGSTTQQQLFQRMQGSGADVLFFFSY*
Ga0075434_10226396413300006871Populus RhizosphereLNKWLRLQTNLVQGSTTQQQLFQRMQGSGVDLLFFFSY*
Ga0075434_10238830223300006871Populus RhizosphereYLNIEQGIGDQSQTNVVLEYELQRWLRLQTNFTQGTQQHQLFQRVKGSGVDLLFFFSY*
Ga0075424_10198897613300006904Populus RhizosphereYELTRWLRFRTNVLQGSSTQAQLFQRMQGSGFDLLFFFSY*
Ga0079219_1042063613300006954Agricultural SoilTNWLRFRTNVLQGSATQQNLFQRAQGSGADLLFFFSY*
Ga0066710_10094733613300009012Grasslands SoilKWLRLRTNVLQGASTQAQLFQRMQGSGADLLFFFSY
Ga0066709_10329703423300009137Grasslands SoilYELTKWLRLQTNLLQGSSTQQSLFQRAQGSGFDLLFLFSY*
Ga0111538_1375356513300009156Populus RhizosphereQRWLRLRTNVLQGSPVQQQLFQRMQGSGVDLLFFFSY*
Ga0075423_1313087423300009162Populus RhizosphereLEYELAKWLRLQTNMLQGSSTQLHPFQRIQGSGADLLFFFSY*
Ga0105242_1176937523300009176Miscanthus RhizosphereEQIIGQQAQTNFIVEYELTRWLRFRTKIVQGSFTQPQMFQKVETSGVDLLFFFSY*
Ga0105242_1227664713300009176Miscanthus RhizosphereYELTRWLRLRTNVLQGSATQQVQFQRVQGSSADLLFFFSY*
Ga0105248_1112606613300009177Switchgrass RhizosphereTRWLRLRTNVLQGANSQPLFQRVQDSGVDLLFFFSY*
Ga0105238_1093343413300009551Corn RhizosphereNFILEYELTRWLRLRTNVLQGANSQPLFQRVQDSGVDLLFFFSY*
Ga0105249_1245577233300009553Switchgrass RhizosphereVLEYELQRWLRLQTNFVQGTQQHQLFQRVKGSGVDLLFFFSY*
Ga0126377_1037293233300010362Tropical Forest SoilWLRLRTNVLQGASTQQNVFQRLQGSGADLLFFFSY*
Ga0126379_1103878923300010366Tropical Forest SoilLEYELTKWLRFRTNMLQGASTQSQLFQRQQGSGADLLFFFGF*
Ga0134125_1248031913300010371Terrestrial SoilILEYELTKWLRLQTNVLQGSSTQQLFQRMQGSGVDLLFFFSF*
Ga0126383_1140541813300010398Tropical Forest SoilELTTWLRFRTNVLQGSSTQANLFQRAQGSGADVLFFFSY*
Ga0134121_1029867213300010401Terrestrial SoilEIGQTNFILEYELAKWLRLRTNVLQGSSTQANLFQRQQGSGADLLFFFSY*
Ga0105246_1222256413300011119Miscanthus RhizosphereTNIILEYELAEWLRLRTNWLQGSNAQPLMFQRAQDSGVDLLFFFTR*
Ga0137376_1141856313300012208Vadose Zone SoilKWLRLQTNVLQGSNTQQQLFQRMQGSGIDLLFFFSY*
Ga0150985_10647144323300012212Avena Fatua RhizosphereRLRLRTNVLQGSSTTQQQMFQRAQDSGADLVFFFSY*
Ga0150985_11145775523300012212Avena Fatua RhizosphereWLRLRTNVLQGSSTTQQLFQRAQGSGVDLLFFFSY*
Ga0150985_11279437113300012212Avena Fatua RhizosphereLEYELAKWLRLRTNVLQGSSTQQQLFQRAQGSGADLLFFFSY*
Ga0150985_12153174913300012212Avena Fatua RhizosphereKWLRLRTNWLQGSNAQPLLFQRTQDSGLDLLFTFSR*
Ga0137371_1030169423300012356Vadose Zone SoilLRFRTNVLQGSSTQQQLFQRMQGSGADLLFFFSY*
Ga0150984_10609109823300012469Avena Fatua RhizosphereAKWLRLRTNVLQGSSTQQQLFQRAQGSGADLLFFFSY*
Ga0157295_1014068833300012906SoilLILEYELTNWLRLRTNVIQGNATQQSLFQRAQGSGADLLFFFSY*
Ga0137413_1126029423300012924Vadose Zone SoilEQAVGGSSQTNFILEYELTRWLRLRTNVLQGANSQPLFQRVQDTGVDLLFFFSY*
Ga0126375_1102924613300012948Tropical Forest SoilTQTNFIVEYELTKWLRLRTNFTQGSFTQQQLFQKVQSSGVDLLFFFSY*
Ga0164302_1086063613300012961SoilTNWLRFRTNVLQGSSAQAQMFRRMQGSGADLLFFFSY*
Ga0157378_1208313123300013297Miscanthus RhizosphereEQGIGELNSTSFILEYELTNWMRLRTNIVQGTTTQTLFRRAQDSGGDIIFFFSY*
Ga0163162_1300161513300013306Switchgrass RhizosphereYELTKWLRLQTNVLQGSNTQQQLFQRMQGSGADLLFFFSY*
Ga0157372_1347125523300013307Corn RhizosphereYELTKWLRMRTNVLQGSTTQAQLFQRMQGSGVDLLFFFSY*
Ga0157375_1067304713300013308Miscanthus RhizosphereQMLGQQSQTNFIVEYELTRWLRFRTKIVQGSFTQPQMFQKVETSGVDLLFFFSY*
Ga0157375_1356261013300013308Miscanthus RhizosphereTTNFILEYEFAKWLRLRTNWLQGSNAQPLLFQKTQDSGVDLLFTFTH*
Ga0134078_1017397223300014157Grasslands SoilTNFILEYELTKWLRFQANLIQGATTQLSIFQRLQSSGADLIFLFSY*
Ga0132256_10101716013300015372Arabidopsis RhizosphereVLEYELLKWLRIRTNVLQGASTQAQLFQRMQGSGADLLFFFSY*
Ga0187765_1021014823300018060Tropical PeatlandFVLEYELAEWLRLQTNVLQGSATQQQLFQRMQGSGADLLFYFTF
Ga0184611_127089413300018067Groundwater SedimentTNFIVEYELTRWLRFRTKIVQGSFTQPQMFQKVETSGVDLLFFFSY
Ga0184624_1051042623300018073Groundwater SedimentQMIGQQSQTNFIVEYELTRWLRFRTKIVQGSFTQPQMFQKVETSGVDLLFFFSY
Ga0190265_1072616313300018422SoilTNFILEYELADWLRLQTNVVEGSSTNPSIFRRAQGTGADLIFFFSY
Ga0190274_1220640623300018476SoilQGTTNLILEYELTNWLRMQTNVVQGSSNNPSLFRRAQSTGGDLLFFFSY
Ga0173479_1026693223300019362SoilYELSKWLRFRTNVLQGSSTQTQLFQRQAGSGADLLFFFGF
Ga0242677_106840613300022713SoilNFILEYELARWLRLRTNVLEGSSAQQQLFQRAQGSGADLIFFFSY
Ga0247744_107071223300023073SoilVEQGVGDQAQTNVVLEYELQRWLRLQTNFKQGAQQQQLFQRVQGSGIDLLFFFSY
Ga0207682_1034880813300025893Miscanthus RhizosphereDQNQTNLILEYELTRWLRLRTNVLQGTPNQSSVFQRLQGSGADLLFFFSY
Ga0207642_1006556523300025899Miscanthus RhizosphereTNFILEYELTRWLRLRTNVLQGANSQPLFQRVQDSGVDLLFFFSY
Ga0207685_1009729943300025905Corn, Switchgrass And Miscanthus RhizosphereIAKWLRLRTNWLQGSNAQPLLFQRTQDSGLDLLFTFSR
Ga0207681_1128943913300025923Switchgrass RhizosphereYELTNWLRLRTNVIQGNATQQSLFQRAQGSGADLLFFFSY
Ga0207694_1096276623300025924Corn RhizosphereQAVGGNSQTNFILEYELTRWLRLRTNVLQGANSQPLFQRVQDSGVDLLFFFSY
Ga0207650_1146251423300025925Switchgrass RhizosphereLTRWLRLRTNVIQGVPTQQSMFQRAQGSGADLLFFFSY
Ga0207701_1164206723300025930Corn, Switchgrass And Miscanthus RhizosphereLQRWLRLQTNFTQGTQQHQLFQRVKGSGVDLLFFFSY
Ga0207690_1052982623300025932Corn RhizosphereELTKWLRLRTNVLQGSTTQANLFQRQQGSGADLLFFFSY
Ga0207670_1020002623300025936Switchgrass RhizosphereIVEYELTRWLRFRTKIVQGSFTQPQMFQKIETSGVDLLFFFSY
Ga0207689_1050582513300025942Miscanthus RhizosphereQSQTNFILEDELTNWLRLQTNVLQGSNTQQSLFQRAQGSGADLLFFFSY
Ga0207651_1117760513300025960Switchgrass RhizosphereILEYELTNWLRLQTNVLQGSNTQQMLFQRAHGTGIDLLFFFSY
Ga0207668_1108370423300025972Switchgrass RhizosphereELNKWLRLQTNMLQGSSNQQQLFQKMQGSGVDLFFFFSY
Ga0207658_1159696023300025986Switchgrass RhizosphereTRWLRLRTNVLQGSSTQQQLFQRAQGSGVDLLFFFSY
Ga0207703_1050884913300026035Switchgrass RhizosphereKWLRLRSNIVQGSSTQQQLFQRVQGTGADLLFFFSY
Ga0207675_10197958423300026118Switchgrass RhizosphereEYELTRWLRFRTKIVQGSFTQPQMFQKVETSGVDLLFFFSY
Ga0209238_114662023300026301Grasslands SoilFVLEYELLKWLRLRTNVLQGSSTQAQLFQRMQGSGADLLFFFNY
Ga0209808_104323613300026523SoilLEYELTKWLRLRTNVLQGSSTQASLFQRQQGSGADLLFFFSY
Ga0209583_1039339213300027910WatershedsLMLEYELTKWLRFRTNVQQGSSTQQQLFQRSQGSGVDLLFIFSY
Ga0268265_1158545323300028380Switchgrass RhizosphereYELTRWLRFRTKIVQGSFTQPQMFQKIETSGVDLLFFFSY
Ga0268264_1013784523300028381Switchgrass RhizosphereELAKWLRLRTNWLQGSTTQPMIFQRTQDSGLDLLFFFTR
Ga0268264_1067893313300028381Switchgrass RhizosphereILEYELSKWLRFRTNVLQGSSTQTQLFQRQSGSGADLLFFFGF
Ga0268264_1176214523300028381Switchgrass RhizosphereEYELTRWLRLRTNVLQGSSTQQQLFQRMQGSGVDLLFFFSY
Ga0307281_1022443523300028803SoilEFAKWLRLRTNWLQGANAQPLLFQKTQDSGVDLLFTFTH
Ga0307497_1026556013300031226SoilEFAKWLRLRTNWLQGSNAQPLLFQKTQDSGVDLLFTFTH
Ga0307506_1041006513300031366SoilWLRLRTNFLQGTSTQPSLFQRAQGSGADLLFFFSY
Ga0310813_1184307613300031716SoilGQSGTNFILEYELTRWLRLRTNVLQGSSTQQQLFQRAQGSGADLLFFFSY
Ga0307468_10243696413300031740Hardwood Forest SoilFVLEYELTKWLRLQTNLLQGSSTQQSLFQRAQGSGFDLLFLFSY
Ga0318494_1042422613300031751SoilEYELTRWLRFRTNYLQGSSAQTQLFQRTQSSGVDVLFFFSY
Ga0318535_1011418023300031764SoilSQTNLVLEYELTRWLRFRTNYLQGSSAQTQLFQRTQSSGVDVLFFFSY
Ga0318512_1058632013300031846SoilYELTRWLRLRTNMLQGSSTQQQQFQRAQGSGADLLFFFSY
Ga0310907_1002442613300031847SoilFILEYELTKWLRLRTNVLQGSSTQTQLFQRQAGSGADLLFFFGF
Ga0310892_1096448123300031858SoilGDQSSTNFILEYELTQWMRLQTNVLQNSNVQQQMFRPIHGTGVDLLFFLSY
Ga0318533_1038705523300032059SoilGQTNLVLEYELTRWLRFRTNYLQGSSAQTQLFQRTQSSGVDVLFFFSY
Ga0306924_1027043113300032076SoilNIILEYELTGWLRFRTNMLQGSSTQQSLFQRAQSSGADLLFLFNY
Ga0307471_10006525413300032180Hardwood Forest SoilAKWLRLRTNVLQGSSTQASLFQRQQGSGADLLFFFSY
Ga0364929_0322870_410_5293300034149SedimentELTRWLRFRTKIVQGSFTQPQMFQKVETSGVDLLFFFSY


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.