Metagenome / Metatranscriptome Family F083209

Basic Information
Family ID	F083209
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	52 residues
Representative Sequence	MARLRATFWIYVTAWVVVVHLVLLPALYFGMGYVIRESHEDLFVEHARTF
Number of Associated Samples	97
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	95
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.53

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (100.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa (19.469 % of family members)
Environment Ontology (ENVO)	Unclassified (23.894 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (52.212 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76 1JGI20205J14842_10267071 2JGI12712J15308_102004152 3JGI12635J15846_101267853 4JGIcombinedJ26739_1006284042 5JGIcombinedJ26739_1011616341 6Ga0062384_1012548721 7Ga0062387_1010639711 8Ga0062386_1002347943 9Ga0066789_100589131 10Ga0075028_1009649582 11Ga0075030_1005395051 12Ga0075018_100142264 13Ga0099795_100619461 14Ga0099795_101760713 15Ga0099828_116238301 16Ga0099792_103923023 17Ga0137393_100067361 18Ga0137399_114890631 19Ga0137385_112651362 20Ga0137390_109094221 21Ga0137397_104278753 22Ga0137413_102579931 23Ga0137416_121993631 24Ga0163162_125099722 25Ga0182030_114399212 26Ga0182030_117444901 27Ga0137420_12581321 28Ga0137418_105194391 29Ga0137412_1000464914 30Ga0137403_111274191 31Ga0187859_106680062 32Ga0181514_11916881 33Ga0193729_11769603 34Ga0193731_10842483 35Ga0193726_10422024 36Ga0193724_10174043 37Ga0210407_108472672 38Ga0210407_113102782 39Ga0210403_100525001 40Ga0210404_109015082 41Ga0210408_109925762 42Ga0210393_103232741 43Ga0210389_103679211 44Ga0210387_111566491 45Ga0210386_108880272 46Ga0210386_110045062 47Ga0210386_113841642 48Ga0210383_113433982 49Ga0210383_115178402 50Ga0210383_115954581 51Ga0210394_103287093 52Ga0210392_101058793 53Ga0210402_103189481 54Ga0210402_105453473 55Ga0210409_111610773 56Ga0210409_116932051 57Ga0224561_10250932 58Ga0224565_10075142 59Ga0179589_102110013 60Ga0207695_100623946 61Ga0209647_10544501 62Ga0209010_10568392 63Ga0209524_10514403 64Ga0209735_10738942 65Ga0209219_11197672 66Ga0209116_11086792 67Ga0209733_10754091 68Ga0209221_11100052 69Ga0208988_11042263 70Ga0209736_11019482 71Ga0209530_11028752 72Ga0209167_103101751 73Ga0209579_105494751 74Ga0209275_106079951 75Ga0209068_102951103 76Ga0209624_106744432 77Ga0209526_103032221 78Ga0209526_105360481 79Ga0302301_11190262 80Ga0302219_102937402 81Ga0302230_102684782 82Ga0308309_104298691 83Ga0311368_102187003 84Ga0311369_106788472 85Ga0311369_109085441 86Ga0311371_108880622 87Ga0311371_120701212 88Ga0311339_115483191 89Ga0302177_100837431 90Ga0302176_104395431 91Ga0311370_103962201 92Ga0311357_107889141 93Ga0210280_11609711 94Ga0302317_102396661 95Ga0302317_102666652 96Ga0302310_101377231 97Ga0302314_100701589 98Ga0302314_103689363 99Ga0302308_108137401 100Ga0302180_103214021 101Ga0265760_101339281 102Ga0170824_1285799323 103Ga0302324_1028402622 104Ga0302326_111289571 105Ga0310686_1057838462 106Ga0307476_105116551 107Ga0307476_108251771 108Ga0307474_106477593 109Ga0302321_1036378901 110Ga0307477_108582911 111Ga0307475_104164163 112Ga0334854_104252_3_170 113Ga0370514_113831_1_138
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76 1JGI20205J14842_10267071 2JGI12712J15308_102004152 3JGI12635J15846_101267853 4JGIcombinedJ26739_1011616341 5Ga0062387_1010639711 6Ga0062386_1002347943 7Ga0066789_100589131 8Ga0075028_1009649582 9Ga0075030_1005395051 10Ga0075018_100142264 11Ga0137393_100067361 12Ga0137416_121993631 13Ga0182030_117444901 14Ga0137420_12581321 15Ga0193729_11769603 16Ga0193731_10842483 17Ga0193726_10422024 18Ga0193724_10174043 19Ga0210383_115954581 20Ga0209733_10754091 21Ga0208988_11042263 22Ga0302219_102937402 23Ga0311370_103962201 24Ga0302310_101377231 25Ga0302321_1036378901
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50 1Ga0311357_107889141 2JGI20205J14842_10267071 3JGI12712J15308_102004152 4Ga0062386_1002347943 5Ga0066789_100589131 6Ga0075028_1009649582 7Ga0075030_1005395051 8Ga0099795_100619461 9Ga0137393_100067361 10Ga0137399_114890631 11Ga0137390_109094221 12Ga0163162_125099722 13Ga0182030_114399212 14Ga0137420_12581321 15Ga0181514_11916881 16Ga0193731_10842483 17Ga0193724_10174043 18Ga0210404_109015082 19Ga0210386_113841642 20Ga0210394_103287093 21Ga0207695_100623946 22Ga0209524_10514403 23Ga0209733_10754091 24Ga0209167_103101751 25Ga0209068_102951103 26Ga0209624_106744432 27Ga0302219_102937402 28Ga0302317_102396661 29Ga0302308_108137401 30Ga0307476_108251771 31Ga0307474_106477593 32Ga0302321_1036378901 33Ga0307475_104164163 34Ga0370514_113831_1_138
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 61.54% β-sheet: 0.00% Coil/Unstructured: 38.46%
Feature Viewer
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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.53
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.53
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Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF00072	Response_reg	22.12
PF00196	GerE	9.73
PF13738	Pyr_redox_3	0.88
PF00574	CLP_protease	0.88
PF02630	SCO1-SenC	0.88
PF03918	CcmH	0.88
PF00668	Condensation	0.88
PF00702	Hydrolase	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG0616	Periplasmic serine protease, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	1.77
COG0740	ATP-dependent protease ClpP, protease subunit	Posttranslational modification, protein turnover, chaperones [O]	1.77
COG1020	EntF, seryl-AMP synthase component of non-ribosomal peptide synthetase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.88
COG1030	Membrane-bound serine protease NfeD, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	0.88
COG1225	Peroxiredoxin	Posttranslational modification, protein turnover, chaperones [O]	0.88
COG1999	Cytochrome oxidase Cu insertion factor, SCO1/SenC/PrrC family	Posttranslational modification, protein turnover, chaperones [O]	0.88
COG3088	Cytochrome c-type biogenesis protein CcmH/NrfF	Posttranslational modification, protein turnover, chaperones [O]	0.88

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Scaffold	Taxonomy	Length	IMG/M Link
No data available in table

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.23%
Host-Associated	Host-Associated	1.77%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	7.96%
Plants	Host-Associated → Plants	1.77%
Terrestrial	Environmental → Terrestrial	90.27%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	4.42%
Peat	Environmental → Terrestrial → Peat	21.24%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.89%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.89%
Sediment	Environmental → Aquatic → Sediment	3.54%
Soil	Environmental → Terrestrial → Soil	68.14%

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.89%
Loam	Environmental → Terrestrial → Soil → Loam	16.81%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	47.79%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	21.24%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.54%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.89%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.42%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.54%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	4.42%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	23.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	16.81%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.89%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.65%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.89%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.12%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	21.24%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.54%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.89%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.89%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	1.77%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.65%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.89%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	15.04%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.89%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.42%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	19.47%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.77%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.58%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.19%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.77%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.89%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.89%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.89%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.89%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	14.16%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.54%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001403	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-2 shallow-092012	Environmental	Open in IMG/M
3300001471	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005994	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M

Showing 1 to 10 of 97 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI20205J14842_10267071	3300001403	Arctic Peat Soil	MVRLRTSFANYVTVWVVGLHLVLLPALFFGMGYVIRKSHEDLFVEHARTFARVLAEE
JGI12712J15308_102004152	3300001471	Forest Soil	MARLTSTFANLVTGCVLAVHLILLPALYFGVGYVIRTSHEEMFVQHARTFAR
JGI12635J15846_101267853	3300001593	Forest Soil	MARLRATFWIYVTAYVVVVHLVLLPALYFGMGYVVRESHEDLFIE
JGIcombinedJ26739_1006284042	3300002245	Forest Soil	MARLRATFWIYVTAWVVVVHLVLLPALYFGMGYVIRESHEDLFVEHARTFSR
JGIcombinedJ26739_1011616341	3300002245	Forest Soil	MVRLRTSFATYVTVCVVAVHIVLLPALFFGMGYVIRKSHEDLFVE
Ga0062384_1012548721	3300004082	Bog Forest Soil	MARLRAISWIYVTACVVVVHLVLLPALYFGLGYVIRESHEDLFVEHARTF
Ga0062387_1010639711	3300004091	Bog Forest Soil	MAQLRATFWIYITAWVVVVHLLLLPALYFGMGYVIRESHEDLFIEHARTFSRVLAD
Ga0062386_1002347943	3300004152	Bog Forest Soil	MAGLRASFANLVVVTVVALHLLLLPALFFGLEFVIRTSQADLFIEHARTFARV
Ga0066789_100589131	3300005994	Soil	MARLSSTFTSFVTACVLAVHLALLPALYFGVGYITRKSHEDLFVQHARTFARVLADQFE
Ga0075028_1009649582	3300006050	Watersheds	MMRLRTPISNLVAGWVVAVHLILLPALYFGLGHIVRTSHADLFIEHARTFARIIADEFEVGAALETPARIAD
Ga0075030_1005395051	3300006162	Watersheds	MVRLRTSFTALVTEVVIAVHLLLLPALYFGMGFVIRTSHETLFVQNSRAFARVLAEEFELSAAIDSSRRT
Ga0075018_100142264	3300006172	Watersheds	MARLRASFANFVTIWVVALHLVLLPALYFGVGYVIRKSHE
Ga0099795_100619461	3300007788	Vadose Zone Soil	MARLSASFARFVTLWVLAVHLVLLPALYFGVGYVIRKSHEDLFVQHARTFARVLADEF
Ga0099795_101760713	3300007788	Vadose Zone Soil	MVRLRPSFASYVTLCVVAVHIVLLPALFFGMGYVIRKSHEDLFVEHARTFARVLAEEFE
Ga0099828_116238301	3300009089	Vadose Zone Soil	MVRLRTSFASYVTLCVVAVHIVLLPALFFGMGYVIRKSHEDLFVEHARTFARVLAEEFEVGV
Ga0099792_103923023	3300009143	Vadose Zone Soil	MARLNATFTNFVTVCVLAIHLVLLPALYFGVGYVIRKSHEDLFVQHARTFARVLADEFEVGAAFDS
Ga0137393_100067361	3300011271	Vadose Zone Soil	MARLKKSFANVVAACVVALHLVLLPALYYGLGYVVRKSHENLFIEHARIFARVLA
Ga0137399_114890631	3300012203	Vadose Zone Soil	MARLRKSFANVVAAFVVALHLILLPALYFGLGYVVRKSHENLFVEHARTFARVLADEFEL
Ga0137385_112651362	3300012359	Vadose Zone Soil	MVRLRPSFASYVTLCVVAVHIVLLPALFFGMGYVIRKSHEDLFVEHARTFARVLAEEFEVGVALD
Ga0137390_109094221	3300012363	Vadose Zone Soil	MARLNATFTNFVTVCVLAIHLVLLPALYFGVGYVIRKSHEDLFVQHARTFARVLADEFEV
Ga0137397_104278753	3300012685	Vadose Zone Soil	MARLSASFARFVTLWVLAVHLVLLPALYFGVGYVIR
Ga0137413_102579931	3300012924	Vadose Zone Soil	MVRLRTSFANYVTVWVVVLHLVLLPALFFGMGYVIRKSHEDLFIEHTRTFARVLAEEFE
Ga0137416_121993631	3300012927	Vadose Zone Soil	MVRLRPSFASYVTLCVVAVHIVLLPALFFGMGYVIRKSHEDLFVEHARTFARVLAEEFEVGVALGSRQR
Ga0163162_125099722	3300013306	Switchgrass Rhizosphere	MARLKASFANYVAACVVALHLVLLPALYYGLGYVIRKSHEDLFIEHARTFARVL
Ga0182030_114399212	3300014838	Bog	MVRLRSSFATYVTACVVVLHLILLPAIFFGMAYVVRKSHENLFIEHARTFARVLAEEFE
Ga0182030_117444901	3300014838	Bog	MARLRATFWIYVTACVVLVHLVLLPALFFALGYVIRESH
Ga0137420_12581321	3300015054	Vadose Zone Soil	MSATFTKFVTASVVAVHLVLLPALYFGVGYIIRKSHEDLFIQHARTFALE*
Ga0137418_105194391	3300015241	Vadose Zone Soil	VTLCVVAVHIVLLPALFFGMGYVIRKSHEDLFVEHARTFARVLAEEFEVGVALDSRRRTEDL
Ga0137412_1000464914	3300015242	Vadose Zone Soil	MVRLRTSFATYVTLCVVAVHIVLLPALFFGMGYVIRKSHED
Ga0137403_111274191	3300015264	Vadose Zone Soil	MARLRKSFANVVAACVVALHLILLPALYYGLGYVVRKSHENLFIEHARIFARVLAD
Ga0187859_106680062	3300018047	Peatland	MARLRATFWIYVTAWVVVVHLVLLPALFFGMGYVIRES
Ga0181514_11916881	3300019268	Peatland	MLRLRATFWVYISACVVVVHLVLLPALYFALGYVIRESHEDLFVEHARTFSRVLADEFE
Ga0193729_11769603	3300019887	Soil	MARLNTTFTNFVTVCVVAIHLVLLPALYFGVGYVIRKSHEDLFVQHAR
Ga0193731_10842483	3300020001	Soil	MNATFARFVTTGVIAVHLVLLPALYFGVGYVIRTSHEDLFVQ
Ga0193726_10422024	3300020021	Soil	MTDKLHMKTSFVNYVTAFVVLVHLFLLPALFLGMGYVIRK
Ga0193724_10174043	3300020062	Soil	MARLNASFARLVTLSVVAVHLVLLPALYFGVGYVIRKSHQDLFVQHARTFARVLADEFEVGAALDSQAKT
Ga0210407_108472672	3300020579	Soil	MARLSASFTKFVTASVVAVHLLLLPALYFGVGHVIRKSHEDLFVQHARTFA
Ga0210407_113102782	3300020579	Soil	MAQLRATFWIYVTVWVVAVHLVLLPALYFGMGYVIRESHEDLFIEHARTFTRVLADEFEVGVALDS
Ga0210403_100525001	3300020580	Soil	MARLRSKFANLVTGCVIAVHLILLPALYFGVGYVIRKSHEDLFVQHARTFARI
Ga0210404_109015082	3300021088	Soil	MARLRSKFANLVTGCVVAVHLILLPALYFGVGYVIRKSHEDLFIQHARTFARILADEF
Ga0210408_109925762	3300021178	Soil	MARLRTSFANFVAVCVVALHLVLLPALYYGLGYVVRKSHEDLFIEHARTFARVLA
Ga0210393_103232741	3300021401	Soil	MARLRSKFANLVTGCVIAVHLILLPALYFGVGYVIRKSHEDLFIQHARTFARILADEFEVGAALD
Ga0210389_103679211	3300021404	Soil	MARLRATFWIYVTAYVVVVHLVLLPALYFGMGYVIRESH
Ga0210387_111566491	3300021405	Soil	MARLRSRFANLVTGCVVAVHLILLPALYFGVGYVIRKSHEDLFVQHARTF
Ga0210386_108880272	3300021406	Soil	MARLRATFWIYVTAYVVVVHLVLLPALYFGMGYVVRESHEDLFIDHARTFSRVLADEFE
Ga0210386_110045062	3300021406	Soil	MAGLRATLSIYVTACVVVVHLVLLPALFFGMGYVIRKSHEDVFVEHASTFSRVLAD
Ga0210386_113841642	3300021406	Soil	MARLKISFANTVAVCVVALHLLFLPALYYALGYVVRKSHEDMFIEHARTFARVLA
Ga0210383_113433982	3300021407	Soil	MARLSASFAKFVTLWVVGVHLVLLPALYFGVGYVIRKSHEDL
Ga0210383_115178402	3300021407	Soil	MVRLRTSFANYVTVWVVLLHFVLLPALFFAMGYVIRKSHE
Ga0210383_115954581	3300021407	Soil	MARLRATFWIYVTAYVVVVHLVLLPALYFGMGYVVRESHEDLFIDHARTFSRVLADEFEVGVALDSQT
Ga0210394_103287093	3300021420	Soil	MVRLRTSFATYVTVCVVAVHIVLLPALFFGMGYVIRKSHEDLFVEHARTFARVLAEEF
Ga0210392_101058793	3300021475	Soil	MARLRKSFANVVAAFVVALHLILLPALYYGLGYVVRKSHENLFIE
Ga0210402_103189481	3300021478	Soil	MARLSASFAKFVTLWVVAVHLVLLPALYFGVGYVIRKSHEDLFVQHART
Ga0210402_105453473	3300021478	Soil	MARLRKSFANVVAAFVVALHLILLPALYYGLGYVVRKSHENLFIEHARTFARVLAD
Ga0210409_111610773	3300021559	Soil	MARLRSRFANLVTGCVVAVHLILLPALYFGVGYVIRK
Ga0210409_116932051	3300021559	Soil	MARLSASFAKFVTLWVVGVHLVLLPALYFGVGYVIRKSHEDLFV
Ga0224561_10250932	3300023030	Soil	MARLRATFWIYVTACVMLVHLVLLPALYFGMGYVIRESHEDLFVEHARTFSRVLADEFEVGAAMDSQKRI
Ga0224565_10075142	3300024176	Plant Litter	MARLRATFWIYVTAWVVVVHLVLLPALYFGMGYVIRESHEDLFVEHARTFSRVL
Ga0179589_102110013	3300024288	Vadose Zone Soil	MVRLRPSFASYVTLCVVAVHIVLLPAQFFGMGYVIRKSHEDLFVEHARTFARVL
Ga0207695_100623946	3300025913	Corn Rhizosphere	MVRLRTSFASYVTLCVVAVHIVLLPALYFGLGFVIRKSHEDLFVE
Ga0209647_10544501	3300026319	Grasslands Soil	MVRLRPSFASYVTLCVVAVHIVLLPALFFGMGYVIRKSHEDLFVEHARTFARV
Ga0209010_10568392	3300027370	Forest Soil	MSRLRATFWVYVTACVVVVHLVLLPALFFGMGYVI
Ga0209524_10514403	3300027521	Forest Soil	MVRLRPSFASYVTLCVVAVHVVLLPALFFGMGYVIRKSH
Ga0209735_10738942	3300027562	Forest Soil	MERLRPSFASYVTLCVVAVHIVLLPALFFGMGYVIRKSHEDLFVEHARTFARVLAEEFEVGVALDSR
Ga0209219_11197672	3300027565	Forest Soil	MVRLRTSFATYVTVCVVLLHLVLLPALYFGMGYVIRKSHEDLFVEHARTFSRVLAEEFEVGVA
Ga0209116_11086792	3300027590	Forest Soil	MARLRATFWIYVTACVVLVHLVLLPALYFGMGYVIRE
Ga0209733_10754091	3300027591	Forest Soil	MARLSASFARFVTLWVVGVHLILLLALYFGVGYVIRTSHEDLFVQHARTF
Ga0209221_11100052	3300027609	Forest Soil	MARLRATFWIYVTACVVVVHLVLLPALYFGMGYVIRE
Ga0208988_11042263	3300027633	Forest Soil	MARLRASFANYVAACVVALHLILLPALYYGLGYVIRMSHEDLFIEHAR
Ga0209736_11019482	3300027660	Forest Soil	MARLSATFTKFVTASVVAVHLVLLPALYFGVGYIIRKS
Ga0209530_11028752	3300027692	Forest Soil	MARLRATFWIYVTVWVVVVHLVLLPALYFGMGYVIRESHEDLFIEHARTFSRVLADEFEVGV
Ga0209167_103101751	3300027867	Surface Soil	MARLRWSFANLVVASVVALHLMLLPALYFGLGYVIRKSHAELFIEHARTFARVL
Ga0209579_105494751	3300027869	Surface Soil	MVRLRTSFATYVTVCVVVVHIVLLPALFFGMGYVIRKSHEDLFVEHA
Ga0209275_106079951	3300027884	Soil	MARLRATFWIYVTAWVVVVHLVLLPALYFGMGYVIRESHEDLFVEHART
Ga0209068_102951103	3300027894	Watersheds	MARLRASFANFVTIWVVALHLVLLPALYFGVGYVIRKSHEDLFVQHAR
Ga0209624_106744432	3300027895	Forest Soil	MARIRATFWIYVTACVVLVHVVLLPALFFGMGYVIRESHEDLFID
Ga0209526_103032221	3300028047	Forest Soil	MARLNATFTNFVTVCVIAIHLVLLPALYFGVGYVIRKSHED
Ga0209526_105360481	3300028047	Forest Soil	MVRLRTSFASYVTLCVVAVHIVLLPALFFGMGYVIRKSHEDLFV
Ga0302301_11190262	3300028731	Palsa	MARLRATFWIYVTACVVVVHLVLLPALFFGMGYVIRESHEDLFIEHARTFSRVLADEFEVGRALDSQT
Ga0302219_102937402	3300028747	Palsa	MAELRATLSIYVTACVVVVHLVLLPALFFGMGYVIRKSHEDVFVEHTSTFSRVLADEFEV
Ga0302230_102684782	3300028871	Palsa	MARLRATFWIYVTAWVVVVHLVLLPALYFGMGYVIRESHEDLFVEH
Ga0308309_104298691	3300028906	Soil	MVRLRTSFATYVTVCVVAVHIVLLPALFFGMGYVIRKSHED
Ga0311368_102187003	3300029882	Palsa	MAELRATLSIYVTACVVVVHLVLLPALFFGMGYVIRKSHEDVFVEHTSTFSRVLADEFEVGAALDSQK
Ga0311369_106788472	3300029910	Palsa	MARLRATFWIYVTAWVVVVHLVLLPALYFGMGYVIRESHEDLFVEHA
Ga0311369_109085441	3300029910	Palsa	MARIRATFWIYVTACVVLVHLVLLPALYFGMGYVIRE
Ga0311371_108880622	3300029951	Palsa	MARLRATFWIYVTAWVVVVHLVLLPALYFGMGYVIRESHEDLFVEHARTFSRVLA
Ga0311371_120701212	3300029951	Palsa	MARLRATFWIYVTAWVVVVHLVLLPALYFGMGYVIRESHEDLFVEHARTFS
Ga0311339_115483191	3300029999	Palsa	MARIRATFWIYVTAWVVVVHLVLLPALFFGMGYVIRESHEDLFIEHA
Ga0302177_100837431	3300030053	Palsa	MARLRATFWIYVTACVVVVHLVLLPALFFGMGYVIRESHEDLFIEHARTFSRVLADEFEVGRALDSQ
Ga0302176_104395431	3300030057	Palsa	VYVTACVVVVHLVLLPALYFGLGYVIRESHEDLFIDHARTFSRVLADEFEVGLALDSQT
Ga0311370_103962201	3300030503	Palsa	MAGLRATLSIYVTACVVVVHLVLLPALFFGLGYVIRKSHEEVFVEH
Ga0311357_107889141	3300030524	Palsa	MARLRATFWIYVTAWVVVVHLVLLPALYFGMGYVIRESHEDLFVEHARTF
Ga0210280_11609711	3300030594	Soil	MARLRATFWIYVTACVVLVHLVLLPALYFGMGYVIRESHEDE
Ga0302317_102396661	3300030677	Palsa	MARIRATFWVYVTACVVVAHLVLLPALFFGMGYVIRESHEDLFIEHARTFSRVLADEFEV
Ga0302317_102666652	3300030677	Palsa	MARLRATFWIYVTAWVVVVHLVLLPALYFGMGYVIRESHEDLFV
Ga0302310_101377231	3300030737	Palsa	VYVTACVVVVHLVLLPALYFGLGYVIRESHEDLFIDHARTFSRVLADEFEVGL
Ga0302314_100701589	3300030906	Palsa	MARLRATFWIYVTAWVVVVHLVLLPALYFGMGYVIR
Ga0302314_103689363	3300030906	Palsa	MAQLRATFWIYITAWVVVVHLVLLPALYFGMGYVIRESHQDLFIEHARTFSRVLADEFEVGVA
Ga0302308_108137401	3300031027	Palsa	MARLKASIANYVTVCVVLAHLVLLPALYFGMGYVIRKSHEDLFVEHARTFSRVLADEFEVGV
Ga0302180_103214021	3300031028	Palsa	MARIRATFWVYVTACVVVAHLVLLPALFFGMGYVIRESHEDLFIEHARTFSRVLADEFEVGVALD
Ga0265760_101339281	3300031090	Soil	MARLRATFWIYVTVWVVVVHLVLLPALYFGMGYVIRESHEDLFIEHARTFSRVLADEFEVGAAMDSQKR
Ga0170824_1285799323	3300031231	Forest Soil	MARLKASFANYVAACVVALHLVLLPALYYGLGYVIRKS
Ga0302324_1028402622	3300031236	Palsa	MARLRATFWIYVTAWVVVVHLVLLPALYFGMGYVIRESHEDLFVEHARTFSRVLADEFEVGAAM
Ga0302326_111289571	3300031525	Palsa	MAQLRATFWIYITAWVVVVHLVLLPALYFGMGYVIRESHEDLFIEHARTFSRVLADEFE
Ga0310686_1057838462	3300031708	Soil	MARLRATFWIYVTAWVVVVHLVLLPALYFGMGYVIRESHEDLFVEHAR
Ga0307476_105116551	3300031715	Hardwood Forest Soil	MARLNATFARFVTLWVVAVHLVLLPALYFGVGFVIRKSH
Ga0307476_108251771	3300031715	Hardwood Forest Soil	MARLRTSFANVVAACVVALHLVLLPALYYGLGYVVRKSHEDMFIEHARTLAR
Ga0307474_106477593	3300031718	Hardwood Forest Soil	MARLNATFARFVTLWVVAVHLVLLPALYFGVGFVIRKSHEELFV
Ga0302321_1036378901	3300031726	Fen	MGRLRTPISNLVAGWVVALHLVLLPALYFGLGYIVRTSHEDLF
Ga0307477_108582911	3300031753	Hardwood Forest Soil	MARLRTSFANVVAACVVALHLVLLPALYYGLGYVVRKSHEDMF
Ga0307475_104164163	3300031754	Hardwood Forest Soil	MARLNASFAKVVTASVVAVHLLLLPALYFGVGFVIRKSHEDLFVQHARTFARV
Ga0334854_104252_3_170	3300033829	Soil	MARLRATFWIYVTACVVVVHLVLLPALFFGMGYVIRESHEDLFIEHARTFSRVLAD
Ga0370514_113831_1_138	3300034199	Untreated Peat Soil	MARLRLTFWAYVTVCVVLVHLVLLPALFFALGYVIRESHEDLFVEH

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F083209

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences