NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F083200

Metagenome Family F083200

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F083200
Family Type Metagenome
Number of Sequences 113
Average Sequence Length 55 residues
Representative Sequence VNEHHRLEVAIYEVEEDLLLKDMRRFVREETALSPPSLISKIKEFVRSAGDRLGVF
Number of Associated Samples 81
Number of Associated Scaffolds 113

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 16.19 %
% of genes near scaffold ends (potentially truncated) 75.22 %
% of genes from short scaffolds (< 2000 bps) 88.50 %
Associated GOLD sequencing projects 74
AlphaFold2 3D model prediction Yes
3D model pTM-score0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (83.186 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(27.434 % of family members)
Environment Ontology (ENVO) Unclassified
(50.442 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(50.442 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 58.33%    β-sheet: 0.00%    Coil/Unstructured: 41.67%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.41
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 113 Family Scaffolds
PF00583Acetyltransf_1 3.54
PF01656CbiA 1.77
PF04226Transgly_assoc 1.77
PF00589Phage_integrase 0.88
PF11159DUF2939 0.88
PF07681DoxX 0.88
PF04851ResIII 0.88
PF08042PqqA 0.88
PF00171Aldedh 0.88
PF04174CP_ATPgrasp_1 0.88
PF07045DUF1330 0.88
PF06411HdeA 0.88
PF12681Glyoxalase_2 0.88
PF01042Ribonuc_L-PSP 0.88
PF09361Phasin_2 0.88

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 113 Family Scaffolds
COG2261Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein familyGeneral function prediction only [R] 1.77
COG0014Gamma-glutamyl phosphate reductaseAmino acid transport and metabolism [E] 0.88
COG0251Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 familyDefense mechanisms [V] 0.88
COG1012Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenaseLipid transport and metabolism [I] 0.88
COG2259Uncharacterized membrane protein YphA, DoxX/SURF4 familyFunction unknown [S] 0.88
COG2308Circularly permuted ATP-grasp proteinGeneral function prediction only [R] 0.88
COG4230Delta 1-pyrroline-5-carboxylate dehydrogenaseAmino acid transport and metabolism [E] 0.88
COG4270Uncharacterized membrane proteinFunction unknown [S] 0.88
COG5470Uncharacterized conserved protein, DUF1330 familyFunction unknown [S] 0.88


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A83.19 %
All OrganismsrootAll Organisms16.81 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300005332|Ga0066388_101636036Not Available1135Open in IMG/M
3300005332|Ga0066388_104718264Not Available693Open in IMG/M
3300005439|Ga0070711_100264407All Organisms → cellular organisms → Bacteria1355Open in IMG/M
3300005561|Ga0066699_10989710All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AUGA SZCCT0182583Open in IMG/M
3300005764|Ga0066903_100210344All Organisms → cellular organisms → Bacteria2928Open in IMG/M
3300005764|Ga0066903_103108346Not Available898Open in IMG/M
3300005764|Ga0066903_107410955Not Available567Open in IMG/M
3300006028|Ga0070717_11105176Not Available722Open in IMG/M
3300006059|Ga0075017_100449521Not Available972Open in IMG/M
3300006059|Ga0075017_100902734Not Available686Open in IMG/M
3300006086|Ga0075019_10281708Not Available998Open in IMG/M
3300006102|Ga0075015_100773299Not Available575Open in IMG/M
3300006102|Ga0075015_100822900Not Available559Open in IMG/M
3300006172|Ga0075018_10192706Not Available963Open in IMG/M
3300006755|Ga0079222_12635702Not Available506Open in IMG/M
3300006806|Ga0079220_10765379Not Available723Open in IMG/M
3300010047|Ga0126382_10536084Not Available949Open in IMG/M
3300010048|Ga0126373_10060400All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria3396Open in IMG/M
3300010360|Ga0126372_11901900Not Available640Open in IMG/M
3300010360|Ga0126372_12436422Not Available574Open in IMG/M
3300010361|Ga0126378_10531601All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1291Open in IMG/M
3300012199|Ga0137383_10139248Not Available1774Open in IMG/M
3300012201|Ga0137365_10886059Not Available651Open in IMG/M
3300012207|Ga0137381_10244692Not Available1558Open in IMG/M
3300012211|Ga0137377_10331789All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1457Open in IMG/M
3300012948|Ga0126375_11604126Not Available560Open in IMG/M
3300012971|Ga0126369_10267827All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1691Open in IMG/M
3300012971|Ga0126369_10515948All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1255Open in IMG/M
3300016270|Ga0182036_10188679Not Available1501Open in IMG/M
3300016294|Ga0182041_10073530All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Afipia felis2414Open in IMG/M
3300016294|Ga0182041_10540506All Organisms → cellular organisms → Bacteria1016Open in IMG/M
3300016294|Ga0182041_11023330Not Available747Open in IMG/M
3300016294|Ga0182041_11211335Not Available689Open in IMG/M
3300016319|Ga0182033_10890959Not Available787Open in IMG/M
3300016319|Ga0182033_11227405Not Available672Open in IMG/M
3300016341|Ga0182035_11239688Not Available667Open in IMG/M
3300016357|Ga0182032_10755551Not Available819Open in IMG/M
3300016371|Ga0182034_10282902All Organisms → cellular organisms → Bacteria1322Open in IMG/M
3300016371|Ga0182034_10865627All Organisms → cellular organisms → Bacteria776Open in IMG/M
3300016387|Ga0182040_10209980Not Available1437Open in IMG/M
3300016387|Ga0182040_11569296Not Available560Open in IMG/M
3300016404|Ga0182037_10103602Not Available2054Open in IMG/M
3300016404|Ga0182037_11446387Not Available609Open in IMG/M
3300016404|Ga0182037_11554494Not Available588Open in IMG/M
3300016445|Ga0182038_11094125Not Available708Open in IMG/M
3300016445|Ga0182038_12134836Not Available508Open in IMG/M
3300017822|Ga0187802_10151526Not Available885Open in IMG/M
3300017937|Ga0187809_10103745Not Available955Open in IMG/M
3300017937|Ga0187809_10324241Not Available572Open in IMG/M
3300017955|Ga0187817_10284438Not Available1054Open in IMG/M
3300017955|Ga0187817_10803112Not Available601Open in IMG/M
3300017994|Ga0187822_10203755Not Available661Open in IMG/M
3300017995|Ga0187816_10334229Not Available668Open in IMG/M
3300018007|Ga0187805_10399182Not Available638Open in IMG/M
3300021168|Ga0210406_10715840Not Available770Open in IMG/M
3300026908|Ga0207787_1010474Not Available949Open in IMG/M
3300026981|Ga0207822_1016095Not Available824Open in IMG/M
3300027003|Ga0207722_1031531Not Available576Open in IMG/M
3300027042|Ga0207766_1031228Not Available598Open in IMG/M
3300027070|Ga0208365_1038331Not Available637Open in IMG/M
3300027090|Ga0208604_1019478Not Available644Open in IMG/M
3300027680|Ga0207826_1013155All Organisms → cellular organisms → Bacteria → Proteobacteria2247Open in IMG/M
3300027680|Ga0207826_1102989Not Available785Open in IMG/M
3300031122|Ga0170822_10144883Not Available517Open in IMG/M
3300031170|Ga0307498_10242354Not Available650Open in IMG/M
3300031446|Ga0170820_10622797Not Available949Open in IMG/M
3300031469|Ga0170819_14346113Not Available672Open in IMG/M
3300031573|Ga0310915_10140611Not Available1663Open in IMG/M
3300031573|Ga0310915_10719678Not Available704Open in IMG/M
3300031573|Ga0310915_11166792Not Available533Open in IMG/M
3300031668|Ga0318542_10452421Not Available666Open in IMG/M
3300031724|Ga0318500_10589314Not Available563Open in IMG/M
3300031753|Ga0307477_10179799All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1474Open in IMG/M
3300031753|Ga0307477_10233425Not Available1276Open in IMG/M
3300031763|Ga0318537_10311707Not Available582Open in IMG/M
3300031771|Ga0318546_10675193Not Available727Open in IMG/M
3300031781|Ga0318547_10888220Not Available556Open in IMG/M
3300031796|Ga0318576_10315862Not Available738Open in IMG/M
3300031819|Ga0318568_10521786Not Available741Open in IMG/M
3300031821|Ga0318567_10834361Not Available522Open in IMG/M
3300031890|Ga0306925_11873340Not Available571Open in IMG/M
3300031896|Ga0318551_10355842Not Available829Open in IMG/M
3300031897|Ga0318520_11007694Not Available526Open in IMG/M
3300031910|Ga0306923_12569850Not Available500Open in IMG/M
3300031946|Ga0310910_10446200Not Available1026Open in IMG/M
3300031946|Ga0310910_11034396Not Available641Open in IMG/M
3300031947|Ga0310909_10382724Not Available1181Open in IMG/M
3300031947|Ga0310909_11030106Not Available671Open in IMG/M
3300031954|Ga0306926_11027982Not Available979Open in IMG/M
3300031954|Ga0306926_12906388Not Available514Open in IMG/M
3300031981|Ga0318531_10127171Not Available1133Open in IMG/M
3300032001|Ga0306922_11141274All Organisms → cellular organisms → Bacteria796Open in IMG/M
3300032001|Ga0306922_12089004Not Available549Open in IMG/M
3300032051|Ga0318532_10348031Not Available526Open in IMG/M
3300032059|Ga0318533_10603698Not Available805Open in IMG/M
3300032060|Ga0318505_10039403Not Available1976Open in IMG/M
3300032066|Ga0318514_10714540Not Available533Open in IMG/M
3300032076|Ga0306924_10502710All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1380Open in IMG/M
3300032076|Ga0306924_12466888Not Available522Open in IMG/M
3300032180|Ga0307471_103109559Not Available588Open in IMG/M
3300032205|Ga0307472_100319905All Organisms → cellular organisms → Bacteria1258Open in IMG/M
3300032205|Ga0307472_100967185Not Available794Open in IMG/M
3300032261|Ga0306920_100558153All Organisms → cellular organisms → Bacteria1697Open in IMG/M
3300032261|Ga0306920_101276700Not Available1057Open in IMG/M
3300033289|Ga0310914_10450864All Organisms → cellular organisms → Bacteria1164Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil27.43%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil23.89%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil9.73%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil7.96%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment7.08%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds5.31%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil4.42%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil4.42%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil2.65%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil1.77%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil1.77%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere1.77%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.89%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil0.89%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005439Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaGEnvironmentalOpen in IMG/M
3300005561Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300006059Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012EnvironmentalOpen in IMG/M
3300006086Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013EnvironmentalOpen in IMG/M
3300006102Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013EnvironmentalOpen in IMG/M
3300006172Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014EnvironmentalOpen in IMG/M
3300006755Agricultural soil microbial communities from Georgia to study Nitrogen management - GA PlitterEnvironmentalOpen in IMG/M
3300006806Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100EnvironmentalOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300012199Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012201Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012207Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012948Tropical forest soil microbial communities from Panama - MetaG Plot_14EnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300016270Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080EnvironmentalOpen in IMG/M
3300016294Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178EnvironmentalOpen in IMG/M
3300016319Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00HEnvironmentalOpen in IMG/M
3300016341Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170EnvironmentalOpen in IMG/M
3300016357Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000EnvironmentalOpen in IMG/M
3300016371Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172EnvironmentalOpen in IMG/M
3300016387Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176EnvironmentalOpen in IMG/M
3300016404Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082EnvironmentalOpen in IMG/M
3300016422Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111EnvironmentalOpen in IMG/M
3300016445Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108EnvironmentalOpen in IMG/M
3300017822Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2EnvironmentalOpen in IMG/M
3300017937Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4EnvironmentalOpen in IMG/M
3300017955Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2EnvironmentalOpen in IMG/M
3300017994Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2EnvironmentalOpen in IMG/M
3300017995Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1EnvironmentalOpen in IMG/M
3300018007Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5EnvironmentalOpen in IMG/M
3300021168Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-MEnvironmentalOpen in IMG/M
3300026908Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 77 (SPAdes)EnvironmentalOpen in IMG/M
3300026981Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 67 (SPAdes)EnvironmentalOpen in IMG/M
3300027003Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 26 (SPAdes)EnvironmentalOpen in IMG/M
3300027042Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 68 (SPAdes)EnvironmentalOpen in IMG/M
3300027070Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF004 (SPAdes)EnvironmentalOpen in IMG/M
3300027090Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF016 (SPAdes)EnvironmentalOpen in IMG/M
3300027680Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 80 (SPAdes)EnvironmentalOpen in IMG/M
3300031122Oak Spring Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031170Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_SEnvironmentalOpen in IMG/M
3300031446Fir Summer Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031469Fir Spring Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031573Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111EnvironmentalOpen in IMG/M
3300031668Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23EnvironmentalOpen in IMG/M
3300031724Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20EnvironmentalOpen in IMG/M
3300031744Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)EnvironmentalOpen in IMG/M
3300031753Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515EnvironmentalOpen in IMG/M
3300031763Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29EnvironmentalOpen in IMG/M
3300031771Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19EnvironmentalOpen in IMG/M
3300031781Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20EnvironmentalOpen in IMG/M
3300031796Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24EnvironmentalOpen in IMG/M
3300031819Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21EnvironmentalOpen in IMG/M
3300031821Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20EnvironmentalOpen in IMG/M
3300031890Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)EnvironmentalOpen in IMG/M
3300031896Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19EnvironmentalOpen in IMG/M
3300031897Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16EnvironmentalOpen in IMG/M
3300031910Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)EnvironmentalOpen in IMG/M
3300031941Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080EnvironmentalOpen in IMG/M
3300031946Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172EnvironmentalOpen in IMG/M
3300031947Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000HEnvironmentalOpen in IMG/M
3300031954Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)EnvironmentalOpen in IMG/M
3300031981Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25EnvironmentalOpen in IMG/M
3300032001Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)EnvironmentalOpen in IMG/M
3300032042Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26EnvironmentalOpen in IMG/M
3300032051Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26EnvironmentalOpen in IMG/M
3300032059Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27EnvironmentalOpen in IMG/M
3300032060Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18EnvironmentalOpen in IMG/M
3300032066Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18EnvironmentalOpen in IMG/M
3300032076Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300033289Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0066388_10163603623300005332Tropical Forest SoilVNEHYRLEVAIYEVEEDLLLSGMRRFVREETAPSSPGLSFISGIKEFVRSVGDKFVRLGVF*
Ga0066388_10471826413300005332Tropical Forest SoilEDLLLREMRRFVREETALSPPSLISKIKEFVRSAGDRLGAF*
Ga0070711_10026440743300005439Corn, Switchgrass And Miscanthus RhizosphereEEDLLLNDMRRFVREGTLLSHPSLGFISKIKEFVRSARDRVVRLGVF*
Ga0066699_1098971013300005561SoilLVNEHYALEVAIYKVEEDLLLSDMRRFVRAETALFPSSLSFISKVKAFVRSAENKFVRLGLF*
Ga0066903_10021034463300005764Tropical Forest SoilNDPQISDAQLVNEHHRLEVAIYEVEEDLLLREMRRFVREETGFISKIKKFVRSALRH*
Ga0066903_10310834613300005764Tropical Forest SoilVNEHFRLEVAIYEVEEDLLLRDMRRFVREETALFPLGLSFISKIKEFARSAGGKFVRLGVF*
Ga0066903_10741095513300005764Tropical Forest SoilLEVAIYEVEEDLLLKEMRRFVREEMDFISKIKGFVRSAGDEIFRLSVF*
Ga0070717_1110517613300006028Corn, Switchgrass And Miscanthus RhizosphereYTVEEDLLLSDMRRFVRAETALSPSSLSFISKVKEFVRSAGDKFVRLGVRGSMRRL*
Ga0075017_10044952123300006059WatershedsEEDLLLSDMRRFVREETALSPSSLSFISKVKEFVRSAGDKFVRLGVRGSMRRF*
Ga0075017_10090273433300006059WatershedsYRLEVAIYGVEEDLLLSDMRRFVRAETALSPPSLIISKIKEFVRSVGDKFVRREAEEDWGR*
Ga0075019_1028170813300006086WatershedsRLEVAIYTVEEDLLLSDMRRFVRAETALSPSSLSFISKVKEFVRSAGNKFVRLGLF*
Ga0075015_10077329933300006102WatershedsVEEDLLLSDMRRFVREETALSPSSLSFISKVKEFVRSAGNKFVRLGLF*
Ga0075015_10082290013300006102WatershedsTQLVNEHHRLEVAIYEVEENLLLSEMRRFVREETALSPPSFIISKIKEFARSVGDKFVRLDLF*
Ga0075018_1019270613300006172WatershedsGNDPQISDAELVNEHYRLEVAIYGVEEGLLLSDMRRFVRKETALSSPSSSFISRVKKFVRSIRAS*
Ga0079222_1263570213300006755Agricultural SoilVAIYQVEEDLLLSAMRLFVKEETASPSSLSFVSKVKEFVHSVGDKFVRLSVF*
Ga0079220_1076537913300006806Agricultural SoilISDAELVNEHYKLEVAIYEVEEDLLLSEMRRFVREETALSPPSLIILKINEFVRSVGDKFVRREAEEDWGR*
Ga0126382_1053608413300010047Tropical Forest SoilLHKRLGDDPQISDAELVNEHHRLEVAIYEVEEDLLLREMRLFVREEMDFISKIKEFVRSALRH*
Ga0126373_1006040023300010048Tropical Forest SoilVNEHFRLEAAIYEVEEDLLLRDMRRFVREEMDFISKIKEVVRSALLGWAAAKRI*
Ga0126372_1190190013300010360Tropical Forest SoilVNEHHRLEVAIYEVEEDLLLREMRRFVRDETAFSPPSLISKIKEFVRSAGDRLGV
Ga0126372_1243642213300010360Tropical Forest SoilPQISDTELVNEHYRLEVAIYEVEDDLLLSAMRRFVTEETAFSPPSLIISKIKEFVRSSGAKFVRLGVF*
Ga0126378_1053160113300010361Tropical Forest SoilVNEHFRLEAAIYEVEEDLLLRDMRRFVREEMDFISKIKEVIRSALLGWAAAKRI*
Ga0126379_1159003213300010366Tropical Forest SoilRDMRRFVREETAPSPPSLISKIKEFVRSAGDRLGVF*
Ga0137383_1013924813300012199Vadose Zone SoilDAELVNEHYRLEVAIYGVEEGLLLSDMRRFVRKETALSSPSPSFISRVKKFVRSIRAS*
Ga0137365_1088605923300012201Vadose Zone SoilMNEHYRLEVAVYTVEEDLLLSDMRRFVRAETALSPPSLSFISKVKEFVRSAGNKFVRLGLF*
Ga0137381_1024469223300012207Vadose Zone SoilVNEHYRLEVAIYGVEEDLLLSDMRRFVRAETALSPSSLSFISKVKEFVRSAGDKFARLGVRRSMRRL*
Ga0137381_1042826123300012207Vadose Zone SoilRRFVREETALSPSSLSFISKIKEFVRSAGDKFVRLGVF*
Ga0137377_1033178923300012211Vadose Zone SoilVNEHYRLEVAIYKVEEDLLLSDMRRFVREETDLSPRSLSFISKIKEVVRSAGDKFVRLGVF*
Ga0126375_1160412613300012948Tropical Forest SoilMSITSKVAIYEVEEDFLLRDMRRFVREESALSPPSLMSKIKEFVCSAGDRLGVS*
Ga0126369_1026782753300012971Tropical Forest SoilVNEHHRLEVAIYEVEEDLLLKEMRRFVREGTALPPPSLISKIKQFVRSAGDRLGVF*
Ga0126369_1051594813300012971Tropical Forest SoilRLGNDPQISDADLVNEHFRLEAAIYEVEEDLLLRDMRRFVREEMDFISKIKEVVRSALLGWAAAKRI*
Ga0182036_1018867913300016270SoilEVEEDLLLREMRRFVREDTALFPPSLISKIKEFVRSAGDKFVRLGVF
Ga0182041_1007353033300016294SoilMAIYEVEEDLLQNDMRGFVRKETAPSGPGLSFISKMKEVARSAGDKIVRLGVF
Ga0182041_1054050643300016294SoilAIYEVEEDLLLKDMRRFVREETALSPPSLISKLKKFVRSAGDRLGVF
Ga0182041_1102333033300016294SoilLGNDPQISDAELVNEHHRLEVAIYEVEEDFLLRDMRRFVREESALSPPSLMSKIKEFVCSAGNRLGVS
Ga0182041_1121133513300016294SoilLVNEHFRLEAAIYEVEEDLLLRDMRRFVREEIDFISKIKEFVRSALRH
Ga0182033_1089095913300016319SoilNEHHRLEVAIYEVEEDLLLREMRRFVRGETAPSPPGLSFISKIKDFVRSAGDRLGVF
Ga0182033_1122740523300016319SoilEVAIYEVEEDLLLKDMRRFVREETALSPPSLISKLKEFVRSAGDRLGVF
Ga0182035_1123968813300016341SoilLLLRDMRRFVREETALSPPSLISKIKEFVRSAGDRLGVF
Ga0182032_1075555113300016357SoilLGNDPQISDTDLVNEHFRLEAAIYEVEEDLLLRDMRRFVREEMDFISKIKDFIRSA
Ga0182034_1028290233300016371SoilAIYEVEEDLLLRDMRRFVREGTAPSPPNLISKIKAFVRSAGDRLGVF
Ga0182034_1086562713300016371SoilKRLGNDPQISDAELVNEHHRLEVAIYEVEEDFLLRDMRRFVREESALSPPSLMSKIKEFVCSAGNRLGVS
Ga0182040_1020998013300016387SoilPQISDAELVNEHHKLEVAIYEVEEDLLLRDMRRFAREETALSPPSLISKIKEFVRSAGDRLGVF
Ga0182040_1156929623300016387SoilLSNDSQISHDELVNEHYRLEAAIYEVEDDLLLRDMRRFVSEETALSSRRLSLSLISRVKEFVRPAR
Ga0182037_1010360223300016404SoilVNEHHRLEVAIYEVEEDLLLREMRRFVRDETAFSPPSLMSKIKEFVRSAGDRLGVS
Ga0182037_1144638713300016404SoilVEEDLLLRDMRRFVREETALSPPSLISKIKEFVRSAGDRLGVF
Ga0182037_1155449423300016404SoilNDPQISDADLVNEHHRLEVAIYEVEEALLVKEMRRFVREETALFHLSFISKIKEFVRSAGDKFVRLSVF
Ga0182039_1148077613300016422SoilLKDMRRFVREETALSPPSLISKLKKFVRSAGDRLGVF
Ga0182038_1109412523300016445SoilDAELVNEHHRLEVAIYEVEEDLLLRDMRRFVREGTAPSPPNLISKIKAFVRSAGDRLGVF
Ga0182038_1213483613300016445SoilELVNEHHRLEVAIYEVEEDLLLREMLRFVKAEMALSPPSLISKIKEFVLRSAGDRLGVF
Ga0187802_1015152613300017822Freshwater SedimentLEVAIYEVEEDLLLRDMRRFVREETALSPPSLISKIKEFVRSAGDRLGVF
Ga0187809_1010374533300017937Freshwater SedimentNDPQISDAELVNEHYGLEVAIYTVEEDLLLSDMRRFVREETALSPPSLIISKIKEFVRSVGDKFVRLDVF
Ga0187809_1032424113300017937Freshwater SedimentVEEDLLLSDMRRFVREETALSPPSLIISKIKEFVRSVGDKFVRLGAF
Ga0187817_1028443813300017955Freshwater SedimentAAIYTVEEDLLLSDMRRFVREETALSPPSLIISKIKEFVRSVGDKFVRLGAF
Ga0187817_1080311223300017955Freshwater SedimentNEHYRLEAAIYEVEEDLLLSDMRRFVREDQSRGAPRLSFISRAKEFVRSVGDKFVRLGVF
Ga0187822_1020375513300017994Freshwater SedimentIYKVEEDLLLSVMRRFVREETALSPPSLIISKIKEFVRSVGDKFVRLDVF
Ga0187816_1033422913300017995Freshwater SedimentRLEAAIYKVEEDLLLSDMRRFVREETALSPPFISRVKKFVRSIRASKLNDRD
Ga0187805_1039918223300018007Freshwater SedimentEHYRLEGAIYEVEEGLLLSDMCRFVREETALSPPSLIISKVKEFVRSAGDKFVRLGVRGSMRRL
Ga0210406_1071584013300021168SoilQISDDELVNEHYMLEAAIYKVEEDLLLSVMRRFVREETALSPPSLIISKIKEFVRSVGDKFVRLGVF
Ga0207787_101047413300026908Tropical Forest SoilVNEHHRLEVAIYEVEEDLLLKDMRRFVREETALSPPSLISKIKEFVRSAGDRLGVF
Ga0207822_101609513300026981Tropical Forest SoilLCNDPQISDTDLVNEHFRLEAAIYEVEEDLLLRDMRRFVREEMDFISKIKDFIRSALRH
Ga0207722_103153113300027003Tropical Forest SoilHKLEVAIYEVEEDLLLSDMRRFVREETGFMSKIKEFVPSAWAKLRVLRH
Ga0207766_103122823300027042Tropical Forest SoilHRLEVAIYEVEEDLLLKDMRRFVREETALSPPSLISKLKEFVRSAGDRLGVF
Ga0208365_103833123300027070Forest SoilVNEHYRLEAAIYEVEEDLLLSDMRRFVREETALSPRSLSFISKIKEFVRSAGDKFVRLGV
Ga0208604_101947813300027090Forest SoilLEAAIYEVEEDLLLSDMRRFVREETALSPRSLSFISKIKEFVRSAGDKFVRLGVF
Ga0207826_101315513300027680Tropical Forest SoilLGNDPQISDTDLVNEHFRLEAAIYEVEEDLLLRDMRRFVREEMDFISKIKDFIRSALRH
Ga0207826_110298923300027680Tropical Forest SoilVNEHHRLEVAIYEVEEDLLLSDMRRFVREETGFISKIKEFVPSAWAKLRVLRH
Ga0170822_1014488313300031122Forest SoilQISDTQLVNEHHRLEVAIYEVEEGLLLSEMRRFVREGTALSPPSLIISKINEFVRSVGDKFVRLDLF
Ga0307498_1024235413300031170SoilISDAELVNEHYRLEAAIYGVEEDLLLSGMRRFVREETALSPPSLIISKIKEFVRSAGDKFIRLGVF
Ga0170820_1062279723300031446Forest SoilVNEHYRLEVAVYTVEEDLLLSDMRRFVRAETALSSSSLSFISKVKEFVRSAGDKFARLGVRRSMRRL
Ga0170819_1434611333300031469Forest SoilVEEDLLLSDMRRFVRAETALSPSRLSFISKVKELVRSAGNKFVRLGLF
Ga0310915_1014061133300031573SoilVNEHHRLEAAIYEVEEDLLLSDMRRFVREGTAPSSPGLSFISGVKQFARSVGDKFVRLGV
Ga0310915_1071967813300031573SoilIYEVEEDLLLKDMRRFVREETALSPPSLISKLKKFVRSAGDRLGVF
Ga0310915_1116679233300031573SoilDAELTNAHHRLEVAIYEVEEDLLLKDMRRFVREETALSPPSLISKIKEFVRSAGDRLGVF
Ga0318542_1045242113300031668SoilAIYEVEEDLLLREMRRFVRDETAFSPPSLMSKIKEFVRSAGDRLGVS
Ga0318500_1058931423300031724SoilEEDLLLGDMRRFVTSSPPSLISKLKDFVRSAGDRLGVF
Ga0306918_1022399513300031744SoilPSTKWFVREETALSLPSLISKIKEFVRSAGGRLGVS
Ga0306918_1027316813300031744SoilDMRRFVREGTAPSSPGLSFISGVKQFARSVGDKFVRLGVF
Ga0307477_1017979923300031753Hardwood Forest SoilVAIYEVEEDLLLNDIRRFVREGTLLSHPSLGFISKIKEFVRSVGDKFVRREAEEDWGR
Ga0307477_1023342523300031753Hardwood Forest SoilVNEHYRLEVAIYEVEEELLLSDMRWFVREETALFPPIIVSKIKKFVRSAGDKFIRRVF
Ga0318537_1031170713300031763SoilLLSAMRRFVTEETAFSPPSLIISKIKEFVRSSGAKFVRLGVF
Ga0318546_1067519313300031771SoilVNEHHRLEVAIYEVEEDLLLRDMRRFVREGTAPSPPNLISKIKAFVRSAGDRLGVF
Ga0318547_1088822013300031781SoilRLGNDPQISDAELTNEHHRLEVAIYEVEEDLLLKDMRRFVREETALSPPSLISKLKEFVRSAGDRLGVF
Ga0318576_1031586233300031796SoilSDAELTNEHHRLEVAIYEVEEDLLLKDMRRFVREETALSPPSLISKIKEFVRSAGDRLGV
Ga0318568_1052178633300031819SoilVEEDLLQNDMRGFVRKETAPSGPGLSFISKIKEVARSAGDKIVRLGVF
Ga0318567_1083436123300031821SoilLEAAIYEVEEDLLLSDMRRFVREGTAPSSPGLSFISGVKQFARSVGDKFVRLGVF
Ga0306925_1187334013300031890SoilAAIHEVEEDLLLSDMRPFVREGTAPSSPGLSFISGVKQFARSVGDKFVRLGVF
Ga0318551_1035584213300031896SoilEDDLLLSAMRRFVTEETAFSPPSLIISKIKEFVRSSGAKFVRLGVF
Ga0318520_1100769423300031897SoilAELVNEHHRLEVAIYEVEEDLLLREMRRFVRDETAFSPPSLMSKIKEFVRSAGDRLGVS
Ga0306923_1256985013300031910SoilEDLLLKDMRRFVREGTALSPPSLISKLKEFVRSAGDRLGVF
Ga0310912_1062595213300031941SoilMRRFVREGTTPSSPGLSFISGVKQFARSVGDKFVRLGVF
Ga0310910_1044620033300031946SoilDPQISDAELVNEHHRLEVAIYEVEEDLLLREMRRFVRDETAFSPPSLMSKIKEFVRSAGDRLGVS
Ga0310910_1103439613300031946SoilISDTDLVNEHFRLEAAIYEVEEDLLLRDMRRFVREEIDFISKIKEFVRSALRH
Ga0310909_1038272413300031947SoilDLLLSDMRRFVREGTAPSSPGLSFISGVKQFARSVGDKFVRLGVF
Ga0310909_1103010613300031947SoilTNEHHRLEVAIYEVEEDLLLKDMRRFVREETALSPPSLISKIKEFVRSAGDRLGVF
Ga0306926_1102798223300031954SoilRLEVAIYEVEEDLLLTEMRRFVREETALSPPSLISKIKEFVRSAGDRLGAF
Ga0306926_1290638823300031954SoilKRLGNDPQISDAELVNEHHRLEVAIYEVEEDLLLREMRRFVREETALSPPSLISKIKEFVRSTGDRLGAF
Ga0318531_1012717113300031981SoilDLLLSAMRRFVTEETAFSPPSLIISKIKEFVRSSGAKFVRLGVF
Ga0306922_1114127413300032001SoilYEVEEDFLLRDMRRFVREESALSPPSLMSKIKEFVCSAGNRLGVS
Ga0306922_1208900423300032001SoilHHRLEVAIYEVEEALLVKEMRRFVREETALFHLSFISKIKEFVRSAGDKFVRLSVF
Ga0318545_1033267113300032042SoilMRRFVREGTALSSPGLSFISGVKQFARSVGDKFVRLGVF
Ga0318532_1034803113300032051SoilQERLGNDLQISDAELVNEHYALEAAIYRVEDELLLSDMRRLVTERAALSSPRLSFISRVKEFVRAHAR
Ga0318533_1060369813300032059SoilDTELVNEHHRLEVAIYEVEEDLLLKDMRRFVREETALSPPSLISKLKEFVRSAGDRLGVF
Ga0318505_1003940353300032060SoilYEVEEDLLLSDMRRFVREGTAPSSPGLSFISGVKQFARSVGDKFVRLGVF
Ga0318514_1071454023300032066SoilLSNDSQISHDELVNEHYRLEAAIYEVEDDLLLRDMRRFVSEETALSSRRLSLISRVKEFVRPAR
Ga0306924_1050271033300032076SoilLGNDPQISDTELVNEHHRLEVAIYEVEEDLLLKDMRRFVREGTALSPPSLISKLKEFVRSAGDRLGVF
Ga0306924_1246688813300032076SoilVNEHHRLEVAIYEVEEDFLLRDMRRFVREESALSPPSLMSKIKEFVCSAGNRLGVS
Ga0307471_10310955923300032180Hardwood Forest SoilVAIYEVEEDLLLNDIRRFVREGTLLSHPSLGFISKIKEFV
Ga0307472_10031990513300032205Hardwood Forest SoilNDELVTEHHRLEAAIHRVEEDLLLSAMRRFVKEETASPSSLSFVSKVKEFVHSVGDKFVRLSVF
Ga0307472_10096718513300032205Hardwood Forest SoilAIYEVEEDLLLSEMRRFVREETALSPPSLIISKINEFVRSVGDKFVRREAEEDWGR
Ga0306920_10055815323300032261SoilVNEHHRLEVAIYEVEEDLLLRDMRRFVREETALSPPSLISKIKAFVRSAGDRLGVF
Ga0306920_10127670013300032261SoilRLGNDPQISDTELVNEHHRLEVAIYEVEEDLLLKDMRRFVREETALSPPSLISKLKEFVRSAGDRLGVF
Ga0310914_1045086413300033289SoilDKRLGNDPQISDAELVNEHHRLEVAIYEVEEDFLLRDMRRFVREESALSPPSLMSKIKEFVCSAGNRLGVS
Ga0310914_1145005913300033289SoilEMRRFVRDETAFSPPSLMSKIKEFVRSAGDRLGVS


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