Metagenome / Metatranscriptome Family F083161

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F083161
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	59 residues
Representative Sequence	MKEVFTKSFWEGVKKTFDEALEGPPPANTALQTKAEGDLRASSTPETPPSPSVSSERN
Number of Associated Samples	90
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	84.82 %
% of genes near scaffold ends (potentially truncated)	24.78 %
% of genes from short scaffolds (< 2000 bps)	77.88 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (78.761 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (14.159 % of family members)
Environment Ontology (ENVO)	Unclassified (23.894 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (48.673 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 17.44% β-sheet: 0.00% Coil/Unstructured: 82.56%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.32
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.32
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF07995	GSDH	7.08
PF01557	FAA_hydrolase	5.31
PF00903	Glyoxalase	3.54
PF13924	Lipocalin_5	3.54
PF13360	PQQ_2	2.65
PF01266	DAO	2.65
PF13442	Cytochrome_CBB3	2.65
PF03404	Mo-co_dimer	1.77
PF12704	MacB_PCD	1.77
PF00034	Cytochrom_C	1.77
PF00773	RNB	1.77
PF00144	Beta-lactamase	0.88
PF00561	Abhydrolase_1	0.88
PF01258	zf-dskA_traR	0.88
PF03100	CcmE	0.88
PF13450	NAD_binding_8	0.88
PF00069	Pkinase	0.88
PF07883	Cupin_2	0.88
PF00881	Nitroreductase	0.88
PF08734	GYD	0.88
PF10056	DUF2293	0.88
PF02899	Phage_int_SAM_1	0.88
PF00657	Lipase_GDSL	0.88
PF01527	HTH_Tnp_1	0.88
PF06283	ThuA	0.88
PF14759	Reductase_C	0.88
PF13495	Phage_int_SAM_4	0.88
PF01740	STAS	0.88
PF08450	SGL	0.88
PF03237	Terminase_6N	0.88
PF02371	Transposase_20	0.88
PF03712	Cu2_monoox_C	0.88
PF13490	zf-HC2	0.88
PF03060	NMO	0.88
PF11138	DUF2911	0.88
PF01636	APH	0.88
PF00892	EamA	0.88
PF04542	Sigma70_r2	0.88
PF11578	DUF3237	0.88
PF08281	Sigma70_r4_2	0.88
PF13432	TPR_16	0.88
PF00106	adh_short	0.88
PF00072	Response_reg	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG2133	Glucose/arabinose dehydrogenase, beta-propeller fold	Carbohydrate transport and metabolism [G]	7.08
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.54
COG0557	Exoribonuclease R	Transcription [K]	1.77
COG4776	Exoribonuclease II	Transcription [K]	1.77
COG2332	Cytochrome c biogenesis protein CcmE	Posttranslational modification, protein turnover, chaperones [O]	0.88
COG4974	Site-specific recombinase XerD	Replication, recombination and repair [L]	0.88
COG4973	Site-specific recombinase XerC	Replication, recombination and repair [L]	0.88
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.88
COG4813	Trehalose utilization protein	Carbohydrate transport and metabolism [G]	0.88
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.88
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.88
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	0.88
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	0.88
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.88
COG2070	NAD(P)H-dependent flavin oxidoreductase YrpB, nitropropane dioxygenase family	General function prediction only [R]	0.88
COG1734	RNA polymerase-binding transcription factor DksA	Transcription [K]	0.88
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.88
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.88
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.88
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.88
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.88
COG0516	IMP dehydrogenase/GMP reductase	Nucleotide transport and metabolism [F]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	78.76 %
Unclassified	root	N/A	21.24 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	78.76 %
Unclassified	root	N/A	21.24 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	78.76 %
Unclassified	root	N/A	21.24 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	42.48 %
Unclassified	root	N/A	21.24 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	7.08 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.24 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	20.35 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	6.19 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.88 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.24 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	19.47 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	4.42 %
Acidobacteria bacterium 13_1_40CM_4_57_6	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_57_6	0.88 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.88 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.88 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.24 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	19.47 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4.42 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	0.88 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.88 %
Acidobacteria bacterium 13_1_40CM_4_57_6	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_57_6	0.88 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.24 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	19.47 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	0.88 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	0.88 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	0.88 %
Acidobacteria bacterium 13_1_40CM_4_57_6	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_57_6	0.88 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.24 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	19.47 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	0.88 %
unclassified Acidobacterium	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium	0.88 %
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	0.88 %
Acidobacteria bacterium 13_1_40CM_4_57_6	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_57_6	0.88 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.24 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	19.47 %
Acidobacterium sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	0.88 %
Actinomadura atramentaria	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura atramentaria	0.88 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	0.88 %
Acidobacteria bacterium 13_1_40CM_4_57_6	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_57_6	0.88 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908028\|beta3_all_NODE_14989_len_1419_cov_7_145173	All Organisms → cellular organisms → Bacteria	1469	Open in IMG/M
3300001546\|JGI12659J15293_10119736	Not Available	572	Open in IMG/M
3300001593\|JGI12635J15846_10417844	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	806	Open in IMG/M
3300004092\|Ga0062389_104227672	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura atramentaria	540	Open in IMG/M
3300005434\|Ga0070709_10101345	Not Available	1919	Open in IMG/M
3300005436\|Ga0070713_101003598	Not Available	805	Open in IMG/M
3300005439\|Ga0070711_102055444	Not Available	503	Open in IMG/M
3300005445\|Ga0070708_100114262	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2484	Open in IMG/M
3300005468\|Ga0070707_100766734	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	928	Open in IMG/M
3300005542\|Ga0070732_10931315	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300005836\|Ga0074470_10861112	All Organisms → cellular organisms → Bacteria	5651	Open in IMG/M
3300006050\|Ga0075028_100051220	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1986	Open in IMG/M
3300006059\|Ga0075017_101361102	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	558	Open in IMG/M
3300006102\|Ga0075015_100200182	All Organisms → cellular organisms → Bacteria	1063	Open in IMG/M
3300006162\|Ga0075030_101247376	All Organisms → cellular organisms → Bacteria → Acidobacteria	583	Open in IMG/M
3300006173\|Ga0070716_100334163	Not Available	1066	Open in IMG/M
3300006176\|Ga0070765_100432010	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1232	Open in IMG/M
3300006638\|Ga0075522_10007745	All Organisms → cellular organisms → Bacteria	7376	Open in IMG/M
3300006893\|Ga0073928_10004986	All Organisms → cellular organisms → Bacteria	18990	Open in IMG/M
3300009038\|Ga0099829_11152455	Not Available	642	Open in IMG/M
3300009089\|Ga0099828_11344136	All Organisms → cellular organisms → Bacteria	632	Open in IMG/M
3300009089\|Ga0099828_11782646	Not Available	541	Open in IMG/M
3300009090\|Ga0099827_10644888	All Organisms → cellular organisms → Bacteria	914	Open in IMG/M
3300009176\|Ga0105242_10090145	All Organisms → cellular organisms → Bacteria	2579	Open in IMG/M
3300009522\|Ga0116218_1347923	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	662	Open in IMG/M
3300009553\|Ga0105249_13187160	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300009824\|Ga0116219_10698636	Not Available	555	Open in IMG/M
3300010379\|Ga0136449_100020272	All Organisms → cellular organisms → Bacteria	17027	Open in IMG/M
3300010379\|Ga0136449_100137086	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4852	Open in IMG/M
3300010379\|Ga0136449_100442404	All Organisms → cellular organisms → Bacteria	2284	Open in IMG/M
3300010379\|Ga0136449_100719989	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	1669	Open in IMG/M
3300011120\|Ga0150983_12890906	Not Available	566	Open in IMG/M
3300012189\|Ga0137388_10934991	Not Available	801	Open in IMG/M
3300012210\|Ga0137378_10856454	All Organisms → cellular organisms → Bacteria	822	Open in IMG/M
3300012361\|Ga0137360_10199126	All Organisms → cellular organisms → Bacteria → Acidobacteria	1620	Open in IMG/M
3300012362\|Ga0137361_10570615	All Organisms → cellular organisms → Bacteria	1037	Open in IMG/M
3300012917\|Ga0137395_10730738	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	716	Open in IMG/M
3300012958\|Ga0164299_10594005	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	755	Open in IMG/M
3300013306\|Ga0163162_11742920	All Organisms → cellular organisms → Bacteria → Acidobacteria	712	Open in IMG/M
3300014489\|Ga0182018_10012496	All Organisms → cellular organisms → Bacteria → Proteobacteria	5971	Open in IMG/M
3300014489\|Ga0182018_10105244	All Organisms → cellular organisms → Bacteria	1650	Open in IMG/M
3300014501\|Ga0182024_10010316	All Organisms → cellular organisms → Bacteria	19049	Open in IMG/M
3300014654\|Ga0181525_10191187	All Organisms → cellular organisms → Bacteria	1118	Open in IMG/M
3300014657\|Ga0181522_10105200	All Organisms → cellular organisms → Bacteria → Acidobacteria	1632	Open in IMG/M
3300015079\|Ga0167657_1019062	All Organisms → cellular organisms → Bacteria	900	Open in IMG/M
3300016750\|Ga0181505_10135485	All Organisms → cellular organisms → Bacteria → Acidobacteria	824	Open in IMG/M
3300017823\|Ga0187818_10116048	All Organisms → cellular organisms → Bacteria → Acidobacteria	1160	Open in IMG/M
3300017934\|Ga0187803_10131953	All Organisms → cellular organisms → Bacteria → Acidobacteria	981	Open in IMG/M
3300017943\|Ga0187819_10058980	Not Available	2279	Open in IMG/M
3300017988\|Ga0181520_10172839	All Organisms → cellular organisms → Bacteria → Proteobacteria	1728	Open in IMG/M
3300020579\|Ga0210407_10092055	All Organisms → cellular organisms → Bacteria	2296	Open in IMG/M
3300020579\|Ga0210407_10325583	All Organisms → cellular organisms → Bacteria → Proteobacteria	1201	Open in IMG/M
3300020580\|Ga0210403_10004541	All Organisms → cellular organisms → Bacteria	11945	Open in IMG/M
3300020580\|Ga0210403_10375328	All Organisms → cellular organisms → Bacteria → Acidobacteria	1163	Open in IMG/M
3300020581\|Ga0210399_10441901	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1084	Open in IMG/M
3300020581\|Ga0210399_10978002	Not Available	683	Open in IMG/M
3300020581\|Ga0210399_11606526	Not Available	501	Open in IMG/M
3300020583\|Ga0210401_10122970	All Organisms → cellular organisms → Bacteria	2434	Open in IMG/M
3300020583\|Ga0210401_10248270	All Organisms → cellular organisms → Bacteria	1639	Open in IMG/M
3300021180\|Ga0210396_11296346	Not Available	606	Open in IMG/M
3300021181\|Ga0210388_10274826	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1479	Open in IMG/M
3300021181\|Ga0210388_10466626	All Organisms → cellular organisms → Bacteria	1109	Open in IMG/M
3300021407\|Ga0210383_10061242	All Organisms → cellular organisms → Bacteria	3141	Open in IMG/M
3300021420\|Ga0210394_10233140	Not Available	1609	Open in IMG/M
3300021432\|Ga0210384_10896164	All Organisms → cellular organisms → Bacteria	787	Open in IMG/M
3300021477\|Ga0210398_10815178	Not Available	751	Open in IMG/M
3300022557\|Ga0212123_10001426	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	66352	Open in IMG/M
3300025862\|Ga0209483_1030562	All Organisms → cellular organisms → Bacteria → Acidobacteria	2668	Open in IMG/M
3300025906\|Ga0207699_10049909	All Organisms → cellular organisms → Bacteria → Proteobacteria	2465	Open in IMG/M
3300027591\|Ga0209733_1037322	All Organisms → cellular organisms → Bacteria → Acidobacteria	1301	Open in IMG/M
3300027629\|Ga0209422_1057749	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	925	Open in IMG/M
3300027684\|Ga0209626_1106946	Not Available	727	Open in IMG/M
3300027854\|Ga0209517_10366523	All Organisms → cellular organisms → Bacteria → Acidobacteria	820	Open in IMG/M
3300027869\|Ga0209579_10060975	Not Available	1998	Open in IMG/M
3300027882\|Ga0209590_11018977	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	516	Open in IMG/M
3300027894\|Ga0209068_10043679	All Organisms → cellular organisms → Bacteria → Acidobacteria	2259	Open in IMG/M
3300027895\|Ga0209624_10024329	All Organisms → cellular organisms → Bacteria → Acidobacteria	3837	Open in IMG/M
3300027895\|Ga0209624_10039148	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3021	Open in IMG/M
3300027895\|Ga0209624_10377633	All Organisms → cellular organisms → Bacteria	945	Open in IMG/M
3300027898\|Ga0209067_10604963	All Organisms → cellular organisms → Bacteria → Acidobacteria	630	Open in IMG/M
3300027905\|Ga0209415_10351993	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1225	Open in IMG/M
3300027915\|Ga0209069_10145308	All Organisms → cellular organisms → Bacteria → Acidobacteria	1176	Open in IMG/M
3300028379\|Ga0268266_10658274	All Organisms → cellular organisms → Bacteria	1008	Open in IMG/M
3300028747\|Ga0302219_10326297	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	598	Open in IMG/M
3300028906\|Ga0308309_10478408	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1075	Open in IMG/M
3300029943\|Ga0311340_11148922	All Organisms → cellular organisms → Bacteria	628	Open in IMG/M
3300029951\|Ga0311371_12000734	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	615	Open in IMG/M
3300030007\|Ga0311338_10803825	Not Available	937	Open in IMG/M
3300030057\|Ga0302176_10034122	All Organisms → cellular organisms → Bacteria → Acidobacteria	1936	Open in IMG/M
3300030399\|Ga0311353_10687611	All Organisms → cellular organisms → Bacteria	885	Open in IMG/M
3300031057\|Ga0170834_109338174	All Organisms → cellular organisms → Bacteria → Acidobacteria	532	Open in IMG/M
3300031057\|Ga0170834_113811876	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	533	Open in IMG/M
3300031128\|Ga0170823_15015175	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	980	Open in IMG/M
3300031231\|Ga0170824_100547440	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1718	Open in IMG/M
3300031231\|Ga0170824_111187927	All Organisms → cellular organisms → Bacteria → Proteobacteria	947	Open in IMG/M
3300031234\|Ga0302325_12215037	All Organisms → cellular organisms → Bacteria	668	Open in IMG/M
3300031708\|Ga0310686_102003365	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_57_6	979	Open in IMG/M
3300031708\|Ga0310686_113037600	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1077	Open in IMG/M
3300031708\|Ga0310686_115846127	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300031720\|Ga0307469_11941815	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	571	Open in IMG/M
3300031754\|Ga0307475_10612525	Not Available	871	Open in IMG/M
3300031754\|Ga0307475_10720132	All Organisms → cellular organisms → Bacteria → Proteobacteria	795	Open in IMG/M
3300031962\|Ga0307479_10227424	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1840	Open in IMG/M
3300031962\|Ga0307479_10788820	Not Available	926	Open in IMG/M
3300032160\|Ga0311301_10047244	All Organisms → cellular organisms → Bacteria	10026	Open in IMG/M
3300032160\|Ga0311301_10194435	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	3499	Open in IMG/M
3300032160\|Ga0311301_10349317	Not Available	2315	Open in IMG/M
3300032160\|Ga0311301_10877127	All Organisms → cellular organisms → Bacteria → Acidobacteria	1214	Open in IMG/M
3300032173\|Ga0315268_11717127	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	641	Open in IMG/M
3300032180\|Ga0307471_100939391	Not Available	1032	Open in IMG/M
3300032180\|Ga0307471_103509714	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	555	Open in IMG/M
3300032205\|Ga0307472_100451830	All Organisms → cellular organisms → Bacteria → Proteobacteria	1092	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.46%
Host-Associated	Host-Associated	3.54%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	79.65%
Aquatic	Environmental → Aquatic	16.81%
Plants	Host-Associated → Plants	3.54%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	72.57%
Freshwater	Environmental → Aquatic → Freshwater	7.96%
Sediment	Environmental → Aquatic → Sediment	7.08%
Peat	Environmental → Terrestrial → Peat	7.08%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.65%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.77%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	53.98%
Loam	Environmental → Terrestrial → Soil → Loam	15.93%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	7.08%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.08%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	7.08%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.65%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.77%
Lake	Environmental → Aquatic → Freshwater → Lake	0.89%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.89%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.66%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	25.66%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.73%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.08%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	7.08%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.19%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	4.42%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.65%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	2.65%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.65%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.77%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.16%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	10.62%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	7.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	7.08%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	7.08%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	6.19%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.19%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	4.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.54%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	2.65%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.65%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.77%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.77%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	1.77%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	1.77%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.77%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.89%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.89%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.89%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.89%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	0.89%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908028	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog Site B3	Environmental	Open in IMG/M
3300001546	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005836	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006638	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300015079	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-6b, vegetation/snow interface)	Environmental	Open in IMG/M
3300016750	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017934	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017988	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300025862	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300027591	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes)	Environmental	Open in IMG/M
3300027629	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M3 (SPAdes)	Environmental	Open in IMG/M
3300027684	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028747	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_2	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029910	III_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030057	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_1	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032173	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_top	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
beta3_all_00621930	2124908028	Soil	MTEVFTKSFWEGVKRTFHEALEGPPPADNVLETPAEVDLSASPTSETPSSPSVASERD
JGI12659J15293_101197362	3300001546	Forest Soil	MKEVFTKSFWQGVKKTFDQALEDPPPVDNTLPTPADGDQNASLTSATPSAPSPPSGTSGTPL*
JGI12635J15846_104178441	3300001593	Forest Soil	MKEVFSKTFWVAVKKTFDEAREGPPPANTASQTPAEGDLLGPSTSETPPSPSVLSEQHTPGNLDANGR*
Ga0062389_1042276721	3300004092	Bog Forest Soil	MKEVFTKIFWQGVKKTFDEAREDPPAAHAPLQTTPEGDPSASSTSATPSAPSGTSGTTQ*
Ga0070709_101013452	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MKEVFTKSFWEGVKKTFDEALKGPPPENTTLQTPVEGDQRASSAAETSPSPSDSSEQS*
Ga0070713_1010035981	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MKEVFTKSFWEGVKKTFDEALKGPPPENTPLQTPVEGDQRASSAAETSPSPSDSSEQS*
Ga0070711_1020554442	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MKEVFTKSFWEGVKKTFDEALKGPPPENTPLQTPVEGDQRASSAAETSPSPSDS
Ga0070708_1001142624	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MKEVFTKSFWEGVKKTFHEALEGPTPVDNALQAPAEGDLSASSTSETPLSPSVSSERPPDC*
Ga0070707_1007667342	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MKEVFTKSFWEGVKKTFHEALEGPTPVDNVLQAPAEGDLSASSTSETPLS
Ga0070732_109313152	3300005542	Surface Soil	MKEVFTKSFWEGVKKTFDEAREGPPPANTALQTKAEGDPRASSTPETPPPTSVSSEQK*
Ga0074470_108611122	3300005836	Sediment (Intertidal)	MKEVFTKSFWEGVKKTFDEARQDPPPADKPATLAEGDVSASSTAETSSPPPDSSDP*
Ga0075028_1000512202	3300006050	Watersheds	MKEVLTKSFWEGVKRTFDEAREGPTTKDNASQTPAEGDMSASSAPETPPEPSVSG*
Ga0075017_1013611021	3300006059	Watersheds	TIRGARGNDMKEVLTKSFWEGVKRTFDEAREGPTTKDNASQTPAEGDMSASSAPETPPEPSVSG*
Ga0075015_1002001822	3300006102	Watersheds	MKEVLTKSFWEGVKKTFHEALEGPPPADTALQTPAEDDLSASSTSEKLTSPDSIRPPS*
Ga0075030_1012473761	3300006162	Watersheds	MKEVFTKSFWEGVRKTFDEAREGPPPEDTLQTKAKGDLRASSTPETP
Ga0070716_1003341632	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MKEVFTKSFWEGVKKTFDDALKGPPPENTPLQTPVEGDQRASSAAETSPSPSDS
Ga0070765_1004320102	3300006176	Soil	MEEIPSGRNDMKEVFTKSFWEGVKKTFHEAQQDTPPADNVSKTLAEGNQSAASTSEPAKPPSVSSDPRC*
Ga0075522_100077459	3300006638	Arctic Peat Soil	MKEVFTKSFWEGVKKTFHEGLEGQPPSDAALQTPVEKEQSASSTSEKPSSSSVSTERN*
Ga0073928_1000498624	3300006893	Iron-Sulfur Acid Spring	MKEVFTKTFWVAVKKTFDEAREGPLPANTASQTPAEGDLLAPSTVETPPSPAVSSERHPPGNLDANEH*
Ga0099829_111524552	3300009038	Vadose Zone Soil	MKVFTKSFWEGVKDSFHEALEGPTPVDNALQTPAEGDLSASSASETPLSPSVSSERH*
Ga0099828_113441362	3300009089	Vadose Zone Soil	MKEVFTKNFWEGVKKTFHEALEGPPSADSALQTPAECDPSPSSTSETPAPPSVSSERH*
Ga0099828_117826461	3300009089	Vadose Zone Soil	MKEVFTKRFWEGVKKTFDEARKGPPPANTALQTKAEGDLRASSTPETPPSPSVSSERN*
Ga0099827_106448881	3300009090	Vadose Zone Soil	MKEVFTKSFWEGVKKTFDEAPEGPPPANTTLQTPAEGDSSTSEEPPSPSGPSERS*
Ga0105242_100901452	3300009176	Miscanthus Rhizosphere	MREVFTRSFWEGVKKTFDQALEGPPLGDKAVQIKTEDDPSPSSTSETPSPPSVSSERR*
Ga0116218_13479232	3300009522	Peatlands Soil	MKEVLTKSFWQGVKKTFHEALKHPPPADNALQTPAEGDPNASLTSATPSPSAPSSPTVPTGTSGTNL*
Ga0105249_131871602	3300009553	Switchgrass Rhizosphere	MKEVLTKSFWKDVKKTFDEALEGPPPVDKAVRIKTEDDPSPSSTSETPSPPSVSSERR*
Ga0116219_106986361	3300009824	Peatlands Soil	RDELRTRYHDGHARNDMKEVFTKSFWEGVKKTFDEALEGRPTTDNALQTKAEGDLRTSTTAETPPSPSVSSERH*
Ga0136449_10002027220	3300010379	Peatlands Soil	MKEVFTKSFWQDVKKTFHEALEDAPPTDRAFETPAEGELSPSSTSETAASSSVESERR*
Ga0136449_1001370864	3300010379	Peatlands Soil	MKEVFTKSFWEGVKKTFDEALEGRPTTDNALQTKAEGDLRTSTTAETPPSPSVSSERH*
Ga0136449_1004424041	3300010379	Peatlands Soil	MKEVFTKSFWEGVRRTFDEAREGPPPEDNPLQTEAEGDLRVPSMPEAPSPQ
Ga0136449_1007199892	3300010379	Peatlands Soil	MKEVLTKSFWEGVKKTFHEALEGPPPAGTDLQAPTESDLSASSKSETPSSPSVSSDR*
Ga0150983_128909062	3300011120	Forest Soil	DMKEVFTKRFWEGVKKTFDEARKGPPPANTSLQTKVEGDLRASSTPETPPSPSVSSERN*
Ga0137388_109349912	3300012189	Vadose Zone Soil	MKEVFTKSFWEGVKDSFHEALEGPTPVDNALQTPAEGDLSASSASETPLSPSVSSERH*
Ga0137378_108564542	3300012210	Vadose Zone Soil	MKEVFTKSFWESVKKTFHEALEGPPPADNALQTPGEGDLSASSSTSETPSSPSVSSEQR*
Ga0137360_101991263	3300012361	Vadose Zone Soil	MKEVSTKSFWEGVKKTFHEALEGPPPADAALQTPAEDDLSASSTSEKPSSPSVSSE
Ga0137361_105706151	3300012362	Vadose Zone Soil	NEMKEVFTKSFWEGVKKTFHESLEGPPSADSALQTPAECDPSPSSTSETPSPPSVSSERH
Ga0137395_107307381	3300012917	Vadose Zone Soil	MKEVLTKRFWEGVKRTFDEAREGPTTKDNASQTPAEGDMSASSTPETPPEPSVSG*
Ga0164299_105940052	3300012958	Soil	MKEVFTKSFWEGVKKTFDDALKGPPPENTPLQTPVEGDQRASSAAETSPSPSDSSEQS*
Ga0163162_117429201	3300013306	Switchgrass Rhizosphere	MKEVFTKRFWEGVKKTFDEAREGPPPANTALQTKAEGDLSASSTPETPPSPSLSSEPRSPGNPSRAK*
Ga0182018_100124966	3300014489	Palsa	MKEVFTKSFWEGVKKTFDEALEGPPPAENASQTPAEGHQSDASTSETPPSPPSVSGERR*
Ga0182018_101052442	3300014489	Palsa	MKEVLTKSFWEGVKKTFHEALEGPPPANNAIQTPAEGDLSASSTSETPSPSVASERH*
Ga0182024_100103168	3300014501	Permafrost	MKEVFTKSFWEGVKKTFDEAREGPPPADSVSQTPAEGDLPSSSSSETPSSPSVSNDQH*
Ga0181525_101911872	3300014654	Bog	VKEVFTKSFWQGVKKTFDEAREDPPPADNAAQTSPEGDLSASKKSETPSPPSVSSDP*
Ga0181522_101052003	3300014657	Bog	MKEVFTKSFWQGVKKTFHEALEDSAQADNALETPTEAEPSASSTSAPPTSPSGTSGTTP*
Ga0167657_10190622	3300015079	Glacier Forefield Soil	MKEVFTKSFWEGVKKTFDEAREGPPPANTVLPTKAEGDLSASKPETLPSLSVSSERN*
Ga0181505_101354851	3300016750	Peatland	HEMKEVFAKSFWQGVKKTFDEAREGPPLAKTASQTLAEGDQRASSTPETPSSPPVSSEPHSPGDTSRTE
Ga0187818_101160482	3300017823	Freshwater Sediment	MKEVFTKSFWEGVRKTFDEAREGPPPGDNTLQTKAKDDLRASSMPETPPPSVSSERN
Ga0187803_101319532	3300017934	Freshwater Sediment	MKEVFTKSFWEGVRKTFDEASEGPPPGDNTLQTKAKDDLRASSMPETPPPSVSSERN
Ga0187819_100589803	3300017943	Freshwater Sediment	MKEVFTKIFWQSVKKTFHEALEDPPPADNASRTPTEGDLSASSTSETPSSQLRAPSANGTGS
Ga0181520_101728391	3300017988	Bog	MKEVFTKSFWEGVKKTFHEALEGPLLADNALQTLVEGDLSASSTSETPSSPSVSSQQH
Ga0210407_100920553	3300020579	Soil	MKEVFTKRFWEGVKRTFDEAREDPPPANTASEIQAESEPSASPTSETPSPPSVSSERPL
Ga0210407_103255832	3300020579	Soil	MKEVFTKRFWEGVKKTFDEAREDPPPANPALQTPAEGDLQTSSTPEHDEVKSSESY
Ga0210403_100045413	3300020580	Soil	MKEVFTKRFWEGVKKTFDEAREDPPPANTASEIQAESEPSASPTSETPSPPSVSSERPL
Ga0210403_103753282	3300020580	Soil	MKEVFTKSFWQGVKRTFDEAQEDPPPADNGVQTPPDGAPSASSTLATPSSPSVSSEPNQR
Ga0210399_104419011	3300020581	Soil	WTREEQNMKELFTKSFWEGVKKTFHEALEGPPPADKALQIPAEGNLSASSKSETPSPPNA
Ga0210399_109780022	3300020581	Soil	MKEVFTKRFWEGVKKTFDEAREDPPPVNNASQIPTEGDLQTSSTPEHDEVKTNGSY
Ga0210399_116065261	3300020581	Soil	MKEVFTKRFWEGVKKTFDEAREDPPPANTASEIQAESEPSASPTSETPSPPSVSS
Ga0210401_101229702	3300020583	Soil	MEISWTREEPMKELFTKSFWESVKKTFDQAQEDPPPATKALQTPAEGELNSSSTPETPRPVNSSSSPSQ
Ga0210401_102482703	3300020583	Soil	MKELFTKGFWEGVKRTFQEALEGPPPRDNALRTLAEGDPRASSTSETPSSPSVSSERSRPRTRKA
Ga0210396_112963462	3300021180	Soil	MKELFTKSFWESVKKTFDQAQEDPPPATKALQTPAEGELNSSSTPETPRPVNS
Ga0210388_102748262	3300021181	Soil	MEEIPSGRNDMKEVFTKSFWEGVKKTFHEAQQDTPPADKVSKTLAEGNQSAASTSEPAKPPSVSSEPRC
Ga0210388_104666263	3300021181	Soil	MKEVFTKSFWQGVNKTFHEALEDPPPADNALQTPPAEEPSASSTSATPSSPSVPSERT
Ga0210383_100612422	3300021407	Soil	MKELFTKSFWESVKKTFDQAQEDPPPATKALQTPAEGELNSSSTPETPRPVNSSSSPSQ
Ga0210394_102331402	3300021420	Soil	MDAEGAGMKEVFTKSFWQGVKRTFDEAQKDAPPADNGVQTPADGDSSASTTLATPSSPSVSSERNQRN
Ga0210384_108961641	3300021432	Soil	MKELFTKSFWEGVKKTFHEALEGPPPADKALQIPAEGNLSASSKSETPSPPNAK
Ga0210398_108151781	3300021477	Soil	MKEIFTKSFWQGVKKTFDEAREGPPLANTASQTLAEGEERASATPEAPSSPPISSEPHSPSDTSRTE
Ga0212123_1000142654	3300022557	Iron-Sulfur Acid Spring	MKEVFTKTFWVAVKKTFDEAREGPLPANTASQTPAEGDLLAPSTVETPPSPAVSSERHPPGNLDANEH
Ga0209483_10305624	3300025862	Arctic Peat Soil	MKEVFTKSFWEGVKKTFHEGLEGQPPSDAALQTPVEKEQSASSTSEKPSSSSVSTERN
Ga0207699_100499093	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MKEVFTKSFWEGVKKTFDEALKGPPPENTTLQTPVEGDQRASSAAETSPSPSDSSEQS
Ga0209733_10373222	3300027591	Forest Soil	MKEVFTKSFWEGVKKTFHEALEGPPPVDNALQTPAEGDLSASSTSETPSSPSVSS
Ga0209422_10577492	3300027629	Forest Soil	MKEVFSKTFWVAVKKTFDEAREGPPPANTASQTPAEGDLLGPSTSETPPSPSVLSEQHTPGNLDANGR
Ga0209626_11069462	3300027684	Forest Soil	MKEVFTKRFWEGVKKTFDEAREGPPQANTVLQTPAEGDLHASSTPEQEDEVKTSGPY
Ga0209517_103665232	3300027854	Peatlands Soil	MKEVFTKSFWQDVKKTFHEALEDAPPTDRAFETPAEGELSPSSTSETAASSSVESERR
Ga0209579_100609751	3300027869	Surface Soil	MKEVLTKSFWEGVKKTFHEALEGPPPADSALQTPAEDDLSASSTPEKLASPDSIRPPS
Ga0209590_110189771	3300027882	Vadose Zone Soil	MKEVFTKSFWEGVKKTFDEALEGPPPANTALQTKAEGDLRASSTPETPPSPSVSSERN
Ga0209068_100436794	3300027894	Watersheds	MKEVLTKSFWEGVKRTFDEAREGPTTKDNASQTPAEGDMSASSAPETPPEPSVSG
Ga0209624_100243293	3300027895	Forest Soil	MKEVFTKSFWQGVKKTFDQALEDPPPVDNTLPTPADGDQNASLTSATPSAPSPPSGTSGTPL
Ga0209624_100391482	3300027895	Forest Soil	MKEVFTKSFWQGVKKTFHEALEDPPPPANKALQPPAEGDPSASSTTATPRPVNSSSSSNQ
Ga0209624_103776333	3300027895	Forest Soil	MKEVFTKSFWQGVNKTFHEALEDPPPADNALQTPPAEEPSASST
Ga0209067_106049631	3300027898	Watersheds	MKEVFTKRFWEGVKKTFDEAREGPPPEDNTLQTKAKDDPRASSMPETPLPSVSSERN
Ga0209415_103519932	3300027905	Peatlands Soil	MKEVFTRSFWEGVKKTFEEAREGPRPADKAFEAPPESHLDASTSEDPSSPHPNGQGNGVQ
Ga0209069_101453081	3300027915	Watersheds	MKEVLTKRFWEGVKRTFDEAREGPTTKDNASQTPAEGDMSASSAPETPPEPSVSG
Ga0268266_106582741	3300028379	Switchgrass Rhizosphere	MREVFTRSFWEGVKKTFDQALEGPPLGDKAVQIKTEDDPSPSSTSETPSPPSV
Ga0302219_103262971	3300028747	Palsa	MDTQGAVLKEVFTKSFWRGVKKTFDEALEDQPPPDQALQTPAEGDSIPSSNSETPPSSSVPNERS
Ga0308309_104784083	3300028906	Soil	MEEIPSGRNDMKEVFTKSFWEGVKKTFHEAQQDTPPADNVSKTLAEGNQSAASTSEPAKPPSVSSDPRC
Ga0311369_100274805	3300029910	Palsa	MKEVFTKDFWKGVKKTFEQALEDPSPADTVSQAPTEADRSEASSTSEKSSSPPIPSEPPH
Ga0311340_111489222	3300029943	Palsa	VKEVFTKSFWQGVKKTFDEAREDPPPADNAAQTSPEGDLSASKKSETPSPPSVSSDP
Ga0311371_120007341	3300029951	Palsa	RLFSGSTMDTQGAVLKEVFTKSFWRGVKKTFDEALEDQPPPDQALQTPAEGDSIPSSNSETPPSSSVPNERS
Ga0311338_108038251	3300030007	Palsa	MKEVFTKSFWQGVKKTFDTALEDPPPPAEKALQIPAEGDPSASSTSATSSVLG
Ga0302176_100341222	3300030057	Palsa	MDTQGAVLKEVFTKSFWRGVKKTFDEALEDQPPPDQALQTPAEGDSITSSNCETPPSSSVPNERS
Ga0311353_106876112	3300030399	Palsa	MKEVFTKSFWQGVKKTFDEAREDPPPADNAAQTSPEGDLSASKKSETPSPPSVSSDP
Ga0170834_1093381741	3300031057	Forest Soil	EGVKKTFDEAREGATPEDNALQTKAEGDLRASSTPETPASPSVSSERN
Ga0170834_1138118762	3300031057	Forest Soil	FWEGVKKTFDEARKGPPPANTASQTKTEGDPRASSTPETPPSPSVSSERN
Ga0170823_150151751	3300031128	Forest Soil	KRFWEGVKKTFDEARKGPPPANTASQTKTEGDPRASSTPETPPSPSVSSERN
Ga0170824_1005474401	3300031231	Forest Soil	MKEVFNKSFWEGVKKTFDEARKGPPPANTASQTKTEGDPRASSTPETPPSPSVSSERN
Ga0170824_1111879272	3300031231	Forest Soil	MKEIFTKSFWVAVKKTFDEAREGPPLVNTASQTPAEGDLIASATVETPPAPSVLGERHSTGNPDAIER
Ga0302325_122150371	3300031234	Palsa	VNNMKEVFTKSFWEGVKKTFDEAQQDTPPADGAMPSPAQGDLNASSTSETPSAPPVSGEG
Ga0310686_1020033651	3300031708	Soil	MKEVFTKRFWETVKKTFDDALEDPPPADNALPAPAKGDLSASSTA
Ga0310686_1130376002	3300031708	Soil	MKEVFTKSFWEGVKKTFDEAQQETPAADNASKTQAEANQSAASTSEPAKPPSVSSEPRC
Ga0310686_1158461272	3300031708	Soil	MKEVFTKSFWQGVKKTFDEALEDPPPADNALQTPPAEEPSASSTSATPSSPSVPSERS
Ga0307469_119418152	3300031720	Hardwood Forest Soil	MKEVFTKSFWEGVKKTFDEARKGPPPANTAFQTKAEGDLRASSTPETPPSPSVSSERN
Ga0307475_106125252	3300031754	Hardwood Forest Soil	MKELFTKSFWEAVKKTFHEALEGPPPADNAMQIPAEGDLSASSKSEEPSRPNAK
Ga0307475_107201322	3300031754	Hardwood Forest Soil	MKEVFTKSFWEGVKKTFDEAREDPPPANTPSQTPTEGDQQTSSTPEHDELKSSGSY
Ga0307479_102274243	3300031962	Hardwood Forest Soil	MKEVFTKRFWEGVKKTFDEARKGPPPANTALQTKAEDDPRASSTPETPPSPSVSSERN
Ga0307479_107888202	3300031962	Hardwood Forest Soil	MKEVFTKTFWVAVKKTFDEAREGPLPAHTASQTPAEGALLASSTLETPPSPAVSSERHSPGNPDANER
Ga0311301_1004724415	3300032160	Peatlands Soil	MKKVFTKSFWQGVKKTFHEALKHPPPADNALQTPAEGDPNASLTSATPSPSAPSSPTVPTGTSGTNL
Ga0311301_101944356	3300032160	Peatlands Soil	MKEVFTKSFWEGVKKTFDEALEGRPTTDNALQTKAEGDLRTSTTAETPPSPSVSSERH
Ga0311301_103493171	3300032160	Peatlands Soil	MKEVFTKSFWEGVKKTFDEAHEGPPPVNTTSHTLTEGDLCASLTSETPSAPSASSAPR
Ga0311301_108771272	3300032160	Peatlands Soil	MKEVLTKSFWEGVKKTFHEALEGPPPAGTDLQAPTESDLSASSKSETPSSPSVSSDR
Ga0315268_117171271	3300032173	Sediment	MKEVFTKSFWEGVKKTFHEALEGPPPADNVVQTPTEGDLSASSTAETPSSPSVSSERH
Ga0307471_1009393911	3300032180	Hardwood Forest Soil	KRFWEGVKKTFDEAREDPPPVNNASQIPTEGDLQTSSTPEHDEVKTNGSY
Ga0307471_1035097141	3300032180	Hardwood Forest Soil	MKEVFTKSFWEGVKKTFHEALGGPTPVDNALQTPAEGDLSASSTSETPLSPSVSSERPPD
Ga0307472_1004518302	3300032205	Hardwood Forest Soil	MKEVFTKSFWEGVRKTFYEAREGPPPEDNTLQTKAKEDLRASSMPETLPPSVSSERN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F083161

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences