Metagenome / Metatranscriptome Family F083149

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F083149
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	74 residues
Representative Sequence	SAFYKGESQEKKLPGDWKEQRFLPGSPAHVMLGGSWGFLFSQSHVVVVTTPSVSDATSSTVGKIANHGSI
Number of Associated Samples	95
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	8.85 %
% of genes near scaffold ends (potentially truncated)	80.53 %
% of genes from short scaffolds (< 2000 bps)	90.27 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.20

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (88.496 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (26.549 % of family members)
Environment Ontology (ENVO)	Unclassified (38.938 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (62.832 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 3.06% β-sheet: 0.00% Coil/Unstructured: 96.94%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.20
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.20
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF02371	Transposase_20	47.79
PF02746	MR_MLE_N	2.65
PF03972	MmgE_PrpD	0.88
PF00756	Esterase	0.88
PF13463	HTH_27	0.88
PF13442	Cytochrome_CBB3	0.88
PF01564	Spermine_synth	0.88
PF13378	MR_MLE_C	0.88
PF14534	DUF4440	0.88
PF03264	Cytochrom_NNT	0.88
PF01042	Ribonuc_L-PSP	0.88
PF00753	Lactamase_B	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG3547	Transposase	Mobilome: prophages, transposons [X]	47.79
COG4948	L-alanine-DL-glutamate epimerase or related enzyme of enolase superfamily	Cell wall/membrane/envelope biogenesis [M]	5.31
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	0.88
COG2079	2-methylcitrate dehydratase PrpD	Carbohydrate transport and metabolism [G]	0.88
COG3005	Tetraheme cytochrome c subunit NapC of nitrate or TMAO reductase	Energy production and conversion [C]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	88.50 %
Unclassified	root	N/A	11.50 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	88.50 %
Unclassified	root	N/A	11.50 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	88.50 %
Unclassified	root	N/A	11.50 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	58.41 %
Unclassified	root	N/A	11.50 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	11.50 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	5.31 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	4.42 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	11.50 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.42 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	3.54 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	1.77 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	11.50 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.42 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3.54 %
Bryobacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae	1.77 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	11.50 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.42 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	1.77 %
unclassified Bryobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae	1.77 %
Silvibacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium	0.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	11.50 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.42 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1.77 %
Bryobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	1.77 %
Silvibacterium bohemicum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	0.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001089\|JGI12683J13190_1009249	All Organisms → cellular organisms → Bacteria → Acidobacteria	953	Open in IMG/M
3300001169\|JGI12661J13543_103586	All Organisms → cellular organisms → Bacteria → Acidobacteria	580	Open in IMG/M
3300001593\|JGI12635J15846_10588660	All Organisms → cellular organisms → Bacteria → Acidobacteria	648	Open in IMG/M
3300002914\|JGI25617J43924_10049575	All Organisms → cellular organisms → Bacteria	1527	Open in IMG/M
3300003505\|JGIcombinedJ51221_10147720	All Organisms → cellular organisms → Bacteria → Acidobacteria	949	Open in IMG/M
3300003505\|JGIcombinedJ51221_10416810	All Organisms → cellular organisms → Bacteria → Acidobacteria	545	Open in IMG/M
3300005104\|Ga0066818_1009751	All Organisms → cellular organisms → Bacteria → Acidobacteria	696	Open in IMG/M
3300005148\|Ga0066819_1004762	All Organisms → cellular organisms → Bacteria → Acidobacteria	823	Open in IMG/M
3300005164\|Ga0066815_10017701	All Organisms → cellular organisms → Bacteria → Acidobacteria	964	Open in IMG/M
3300005165\|Ga0066869_10004579	All Organisms → cellular organisms → Bacteria	1687	Open in IMG/M
3300005168\|Ga0066809_10123211	All Organisms → cellular organisms → Bacteria → Acidobacteria	653	Open in IMG/M
3300005272\|Ga0065703_1024598	All Organisms → cellular organisms → Bacteria → Acidobacteria	587	Open in IMG/M
3300005436\|Ga0070713_100181501	All Organisms → cellular organisms → Bacteria	1891	Open in IMG/M
3300005444\|Ga0070694_100727936	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	809	Open in IMG/M
3300005459\|Ga0068867_101411270	All Organisms → cellular organisms → Bacteria → Acidobacteria	646	Open in IMG/M
3300005578\|Ga0068854_101036584	All Organisms → cellular organisms → Bacteria → Acidobacteria	728	Open in IMG/M
3300005591\|Ga0070761_10067688	All Organisms → cellular organisms → Bacteria → Proteobacteria	2023	Open in IMG/M
3300005712\|Ga0070764_10083362	All Organisms → cellular organisms → Bacteria → Acidobacteria	1685	Open in IMG/M
3300005712\|Ga0070764_10424937	All Organisms → cellular organisms → Bacteria → Acidobacteria	788	Open in IMG/M
3300005719\|Ga0068861_101206835	All Organisms → cellular organisms → Bacteria → Acidobacteria	732	Open in IMG/M
3300006047\|Ga0075024_100357277	All Organisms → cellular organisms → Bacteria → Acidobacteria	732	Open in IMG/M
3300006173\|Ga0070716_100552830	All Organisms → cellular organisms → Bacteria → Acidobacteria	858	Open in IMG/M
3300006173\|Ga0070716_101515173	Not Available	548	Open in IMG/M
3300006175\|Ga0070712_100224233	All Organisms → cellular organisms → Bacteria	1489	Open in IMG/M
3300006176\|Ga0070765_100233990	All Organisms → cellular organisms → Bacteria	1679	Open in IMG/M
3300006176\|Ga0070765_101264295	Not Available	696	Open in IMG/M
3300006176\|Ga0070765_101312404	All Organisms → cellular organisms → Bacteria → Acidobacteria	682	Open in IMG/M
3300006237\|Ga0097621_100557382	All Organisms → cellular organisms → Bacteria → Acidobacteria	1044	Open in IMG/M
3300006871\|Ga0075434_100298181	All Organisms → cellular organisms → Bacteria	1632	Open in IMG/M
3300006903\|Ga0075426_11557767	All Organisms → cellular organisms → Bacteria → Acidobacteria	503	Open in IMG/M
3300009101\|Ga0105247_10822570	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	710	Open in IMG/M
3300010373\|Ga0134128_10125533	All Organisms → cellular organisms → Bacteria	2908	Open in IMG/M
3300010373\|Ga0134128_11114695	All Organisms → cellular organisms → Bacteria → Acidobacteria	871	Open in IMG/M
3300010375\|Ga0105239_10642294	All Organisms → cellular organisms → Bacteria	1212	Open in IMG/M
3300010399\|Ga0134127_10989322	All Organisms → cellular organisms → Bacteria	901	Open in IMG/M
3300011269\|Ga0137392_10740973	All Organisms → cellular organisms → Bacteria → Acidobacteria	813	Open in IMG/M
3300012096\|Ga0137389_11469401	All Organisms → cellular organisms → Bacteria → Acidobacteria	577	Open in IMG/M
3300012361\|Ga0137360_10513399	Not Available	1021	Open in IMG/M
3300012362\|Ga0137361_10363724	All Organisms → cellular organisms → Bacteria	1328	Open in IMG/M
3300012923\|Ga0137359_10044097	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	3867	Open in IMG/M
3300012923\|Ga0137359_11177672	Not Available	654	Open in IMG/M
3300012927\|Ga0137416_10775401	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	846	Open in IMG/M
3300012929\|Ga0137404_10032227	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	3885	Open in IMG/M
3300012951\|Ga0164300_10091575	All Organisms → cellular organisms → Bacteria	1314	Open in IMG/M
3300012957\|Ga0164303_10126529	All Organisms → cellular organisms → Bacteria	1313	Open in IMG/M
3300012957\|Ga0164303_11395561	Not Available	523	Open in IMG/M
3300012958\|Ga0164299_10313765	All Organisms → cellular organisms → Bacteria → Acidobacteria	970	Open in IMG/M
3300012985\|Ga0164308_10167944	All Organisms → cellular organisms → Bacteria	1641	Open in IMG/M
3300012987\|Ga0164307_10127379	All Organisms → cellular organisms → Bacteria	1642	Open in IMG/M
3300012987\|Ga0164307_10669202	All Organisms → cellular organisms → Bacteria → Acidobacteria	809	Open in IMG/M
3300012988\|Ga0164306_10286786	All Organisms → cellular organisms → Bacteria → Acidobacteria	1195	Open in IMG/M
3300014501\|Ga0182024_10237891	All Organisms → cellular organisms → Bacteria	2453	Open in IMG/M
3300016422\|Ga0182039_10031359	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3421	Open in IMG/M
3300019872\|Ga0193754_1018011	All Organisms → cellular organisms → Bacteria → Acidobacteria	758	Open in IMG/M
3300020004\|Ga0193755_1180516	All Organisms → cellular organisms → Bacteria → Acidobacteria	618	Open in IMG/M
3300020021\|Ga0193726_1212021	Not Available	808	Open in IMG/M
3300020579\|Ga0210407_10184850	All Organisms → cellular organisms → Bacteria	1616	Open in IMG/M
3300020581\|Ga0210399_10026995	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4575	Open in IMG/M
3300020581\|Ga0210399_10233111	All Organisms → cellular organisms → Bacteria	1533	Open in IMG/M
3300020581\|Ga0210399_10754613	All Organisms → cellular organisms → Bacteria → Acidobacteria	797	Open in IMG/M
3300020583\|Ga0210401_10192917	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1894	Open in IMG/M
3300020583\|Ga0210401_10285497	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1510	Open in IMG/M
3300021168\|Ga0210406_10231770	All Organisms → cellular organisms → Bacteria	1521	Open in IMG/M
3300021178\|Ga0210408_11501966	All Organisms → cellular organisms → Bacteria → Acidobacteria	504	Open in IMG/M
3300021401\|Ga0210393_10165523	Not Available	1780	Open in IMG/M
3300021401\|Ga0210393_10206104	All Organisms → cellular organisms → Bacteria	1590	Open in IMG/M
3300021405\|Ga0210387_10422860	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1181	Open in IMG/M
3300021407\|Ga0210383_10167417	All Organisms → cellular organisms → Bacteria	1873	Open in IMG/M
3300021420\|Ga0210394_10609348	All Organisms → cellular organisms → Bacteria → Acidobacteria	959	Open in IMG/M
3300021433\|Ga0210391_10114168	All Organisms → cellular organisms → Bacteria	2127	Open in IMG/M
3300021433\|Ga0210391_10205839	Not Available	1547	Open in IMG/M
3300021474\|Ga0210390_10004185	All Organisms → cellular organisms → Bacteria	12237	Open in IMG/M
3300022512\|Ga0242676_1032610	All Organisms → cellular organisms → Bacteria → Acidobacteria	592	Open in IMG/M
3300022532\|Ga0242655_10330695	Not Available	504	Open in IMG/M
3300022726\|Ga0242654_10377190	Not Available	539	Open in IMG/M
3300022733\|Ga0224562_1003352	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1201	Open in IMG/M
3300024186\|Ga0247688_1019068	All Organisms → cellular organisms → Bacteria → Acidobacteria	1002	Open in IMG/M
3300024187\|Ga0247672_1050475	All Organisms → cellular organisms → Bacteria → Acidobacteria	690	Open in IMG/M
3300024254\|Ga0247661_1007225	All Organisms → cellular organisms → Bacteria	1802	Open in IMG/M
3300024254\|Ga0247661_1007914	All Organisms → cellular organisms → Bacteria	1736	Open in IMG/M
3300025885\|Ga0207653_10359928	All Organisms → cellular organisms → Bacteria → Acidobacteria	569	Open in IMG/M
3300025928\|Ga0207700_11559056	All Organisms → cellular organisms → Bacteria → Acidobacteria	585	Open in IMG/M
3300025939\|Ga0207665_10611418	All Organisms → cellular organisms → Bacteria → Acidobacteria	852	Open in IMG/M
3300025939\|Ga0207665_10657019	All Organisms → cellular organisms → Bacteria → Acidobacteria	822	Open in IMG/M
3300026319\|Ga0209647_1011341	All Organisms → cellular organisms → Bacteria	5956	Open in IMG/M
3300026467\|Ga0257154_1076007	All Organisms → cellular organisms → Bacteria → Acidobacteria	533	Open in IMG/M
3300026482\|Ga0257172_1054036	All Organisms → cellular organisms → Bacteria → Acidobacteria	735	Open in IMG/M
3300026508\|Ga0257161_1093905	All Organisms → cellular organisms → Bacteria → Acidobacteria	623	Open in IMG/M
3300026551\|Ga0209648_10832475	Not Available	505	Open in IMG/M
3300027064\|Ga0208724_1002764	All Organisms → cellular organisms → Bacteria	1551	Open in IMG/M
3300027548\|Ga0209523_1008219	All Organisms → cellular organisms → Bacteria	1867	Open in IMG/M
3300027576\|Ga0209003_1087832	All Organisms → cellular organisms → Bacteria → Acidobacteria	581	Open in IMG/M
3300027590\|Ga0209116_1043730	All Organisms → cellular organisms → Bacteria → Acidobacteria	962	Open in IMG/M
3300027605\|Ga0209329_1013991	All Organisms → cellular organisms → Bacteria	1564	Open in IMG/M
3300027645\|Ga0209117_1085012	All Organisms → cellular organisms → Bacteria → Acidobacteria	881	Open in IMG/M
3300027692\|Ga0209530_1032617	All Organisms → cellular organisms → Bacteria	1551	Open in IMG/M
3300027821\|Ga0209811_10081810	Not Available	1141	Open in IMG/M
3300027855\|Ga0209693_10352320	All Organisms → cellular organisms → Bacteria → Acidobacteria	714	Open in IMG/M
3300028138\|Ga0247684_1007745	All Organisms → cellular organisms → Bacteria	1676	Open in IMG/M
3300028906\|Ga0308309_11456820	All Organisms → cellular organisms → Bacteria → Acidobacteria	586	Open in IMG/M
3300029701\|Ga0222748_1094584	All Organisms → cellular organisms → Bacteria → Acidobacteria	574	Open in IMG/M
3300030759\|Ga0265745_1014041	All Organisms → cellular organisms → Bacteria → Acidobacteria	638	Open in IMG/M
3300030991\|Ga0073994_10062517	Not Available	605	Open in IMG/M
3300031040\|Ga0265754_1000597	All Organisms → cellular organisms → Bacteria	1489	Open in IMG/M
3300031057\|Ga0170834_100190753	All Organisms → cellular organisms → Bacteria → Acidobacteria	744	Open in IMG/M
3300031199\|Ga0307495_10167422	All Organisms → cellular organisms → Bacteria → Acidobacteria	581	Open in IMG/M
3300031474\|Ga0170818_112030843	All Organisms → cellular organisms → Bacteria → Acidobacteria	708	Open in IMG/M
3300031720\|Ga0307469_10645566	All Organisms → cellular organisms → Bacteria → Acidobacteria	952	Open in IMG/M
3300032035\|Ga0310911_10117171	All Organisms → cellular organisms → Bacteria	1475	Open in IMG/M
3300032174\|Ga0307470_10112783	All Organisms → cellular organisms → Bacteria	1586	Open in IMG/M
3300032180\|Ga0307471_100177610	All Organisms → cellular organisms → Bacteria → Acidobacteria	2095	Open in IMG/M
3300032180\|Ga0307471_101165372	All Organisms → cellular organisms → Bacteria → Acidobacteria	935	Open in IMG/M
3300032180\|Ga0307471_101439578	All Organisms → cellular organisms → Bacteria → Acidobacteria	848	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.04%
Host-Associated	Host-Associated	7.96%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	91.15%
Plants	Host-Associated → Plants	7.96%
Aquatic	Environmental → Aquatic	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	91.15%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.54%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.54%
Sediment	Environmental → Aquatic → Sediment	0.89%
Roots	Host-Associated → Plants → Roots	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	64.60%
Loam	Environmental → Terrestrial → Soil → Loam	25.66%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.54%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.65%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.89%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.89%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.89%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	33.63%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.32%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	17.70%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.54%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.65%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.89%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.89%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	26.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	13.27%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	10.62%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.96%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.08%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	7.08%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.42%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.42%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.65%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.65%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.77%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.77%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.89%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.89%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001089	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3	Environmental	Open in IMG/M
3300001169	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O2	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300005104	Soil and rhizosphere microbial communities from Laval, Canada - mgHAC	Environmental	Open in IMG/M
3300005148	Soil and rhizosphere microbial communities from Laval, Canada - mgLMA	Environmental	Open in IMG/M
3300005164	Soil and rhizosphere microbial communities from Laval, Canada - mgLAC	Environmental	Open in IMG/M
3300005165	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005272	Switchgrass rhizosphere microbial communities from Buena Vista Grasslands Wildlife Area, Michigan, USA - BV2.1	Host-Associated	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300019872	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a1	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300020021	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300022512	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022532	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022733	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU3	Environmental	Open in IMG/M
3300024186	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK29	Environmental	Open in IMG/M
3300024187	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK13	Environmental	Open in IMG/M
3300024254	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK02	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300026467	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-A	Environmental	Open in IMG/M
3300026482	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-B	Environmental	Open in IMG/M
3300026508	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-A	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027064	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF003 (SPAdes)	Environmental	Open in IMG/M
3300027548	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027576	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027590	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O1 (SPAdes)	Environmental	Open in IMG/M
3300027605	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027645	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)	Environmental	Open in IMG/M
3300027692	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300028138	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK25	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029701	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030759	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSU1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030991	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031040	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE6 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031199	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 7_S	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12683J13190_10092492	3300001089	Forest Soil	PNGRGTSPVSAFYKGESQEKKLPGDWKEQRFLPGSPAHVMLGGSWGFLFSQSHVVVVTTPSVSDATSSTVAKISNHGSI*
JGI12661J13543_1035861	3300001169	Forest Soil	DIENWAIGTCSVRAFYKGESQEKNLPGDWKEQRFLPVSPAHVMLGGSWGSLVSPIHVAVVTTPSVSDATSSAVAKNANHSSI*
JGI12635J15846_105886601	3300001593	Forest Soil	ISAFYKGESQEKNFTGDWKEQRFLPGSPAHVMLGGSWGSLFSQIHVAVVTTSSVSDATSSAVAIKMPTIVLSEARGL*
JGI25617J43924_100495751	3300002914	Grasslands Soil	GESQEKKLPGDRKEQRFLPGSPAHVMLGGSWGSLFSQSHVVVVTTPSVSDATSSTVAKIANHGSI*
JGIcombinedJ51221_101477201	3300003505	Forest Soil	PVRAFYKGESQEKNLPGDWKEQRFLPVSPAHVMLGGSWGSLVSPIHVAVVTTPSVSDATSSAVAKNANHSSI*
JGIcombinedJ51221_104168102	3300003505	Forest Soil	VTAFYKGESQEKNLPGDWKEQRFLPVSPAHVMLGGSWGSLFSPIHVAVVTTPSVSDATSSAVAKMPTIVLSEARGL*
Ga0066818_10097512	3300005104	Soil	TPDKSGNLRSQFKWTVTAFYKGESQGKNFPGDWKEQRFLPGSPAHVVLGGSWGSLFSQIHVAIVTTSSVSDATSSAVAKSANHGSI*
Ga0066819_10047622	3300005148	Soil	RGADLLCNHLKSTCTIWAFYKGESQEKNFSGDWKEQRFLPGSSAHVVLGGSWGSLFSQIHVAVVTTSSVSDATSSAVGKIANHGSI*
Ga0066815_100177012	3300005164	Soil	PVRAFYKGESQEKNFPGDWKEQRFLPGSPAHVVLGGSWGSLFSQIHVAIVTTSSVSDATSSAVAKSANHGSI*
Ga0066869_100045791	3300005165	Soil	RLRADSTWTVTAFYKGESQGKNFPGDWKEQRFLPGSPAHVMLGGSWGALFPQIHVAVVTTASVSDATSSTVAIKMPTMVLSEARGL*
Ga0066809_101232111	3300005168	Soil	TAFYKGESQEKNFPGDWKEQRFLPGSPAHVMLGGSWGALFPQIHVAVVTTASVSDATSSTVAIKMPTMVLSEARGL*
Ga0065703_10245982	3300005272	Switchgrass Rhizosphere	SLVPTSPVSAFYKGESQGKKLPGDWKEQRFLPDSPAHEMLGGSWGFLFSQSHVVVVTTPSVSDATSSAVGKIANHGSI*
Ga0070713_1001815011	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MWFCPIFTSPITAFYKGESQEKKLPGDWKEQRFLPGSPAHVMLGGSWGFLFSQSHVVVVTTPSVSDATSRTVAKIANHGSI*
Ga0070694_1007279362	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	YKGESQEKKLPGDWKEQRFVPGSPAHVMLGGSWGSLFSQSHVVVVTTPSVSGATSSTVAKIANHGSI*
Ga0068867_1014112702	3300005459	Miscanthus Rhizosphere	RVLYKGESQEKKLPGDWKEQRFLPGSPAHVMLGGSWVFLFSQSHVVVVTTPSVSDATSSAVGKIANHSSI*
Ga0068854_1010365841	3300005578	Corn Rhizosphere	PGDWKEQRFVPGSPAHVMLGGSWGSLFSQSHVVVVTTPSVSGATSSTVAKIANHGSI*
Ga0070761_100676882	3300005591	Soil	MPVVAQAELRALSGTAFYKGESQEKKRPRDWKEQRFLLGSPAQVMLGGSWGSLFSQSHVAVVTTPSVSDATSSAVAKIANHSSI*
Ga0070764_100833622	3300005712	Soil	MLDLMDDTAFYKGESQEKKRPRDWKEQRFLLGSPAQVMLGGSWGSLFSQMHVSVVTTPSVSGATSSAVAKIANHSSI*
Ga0070764_104249372	3300005712	Soil	FYKGESQEKRLPGDWKEQRFLPGSPAQVMLGGSWGFLFSPSHVVVVTTPSVSDATSRTVAKIANHGSI*
Ga0068861_1012068351	3300005719	Switchgrass Rhizosphere	AFYKGESQEKKLPGDWKEQRFLPGSPAHVMLRGSWGSLFSRSHVVVVTTPSVSDATSSTVARIANHGSI*
Ga0075024_1003572772	3300006047	Watersheds	MITSAFYKGESQEKKLPGDWKEQRFLPGSPAHVMLGGSWGSLFSQSHVVIVTTPSVSDATSSTVAKIANHGSI*
Ga0070716_1005528301	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	DWKEQRFLLGSPAHVMLGGSWRFLFSQSHVVVVTTPSVSDATSSAVAEIGNHGSI*
Ga0070716_1015151731	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MRTLADFKFPVTAFYKGESQEKKFPGDWKEQRFLPGSPAHVMLGGSWFFLFSQSHVVVVTTPSVSDATSSTVAKIANHGSI*
Ga0070712_1002242332	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	TAFYKGESQEKNFPGDWKEQRFLPGSPARVMLGGSWGSLFSQSHVVVVTTPSVSDATSSTVAKIANHSSI*
Ga0070765_1002339901	3300006176	Soil	AFYKGESQEKNVPDDWKERFLSGSPAYVMLGGSWGSLLSPIHVAVVTTPSVSDATSSAVAKMPTIVLSEARGL*
Ga0070765_1012642952	3300006176	Soil	MPTSAVTAFYKGESQEKNFPGDWKEHRFVPGSPAHVMLGGSWGSLFSQIHVVVVTTPAVSDATSSAVAKCQP*
Ga0070765_1013124041	3300006176	Soil	CPVTAFYKGESQEKKLPGDWKEQRFLPGSPAQVMLGGSWGFLFSQSHVVVVTTPSVSDATSRTVAKIANHGSI*
Ga0097621_1005573822	3300006237	Miscanthus Rhizosphere	AFYKGESQGKKLPGDWKEQRFLPDSPAHEMLGGSWGFLCSQSHVVVVTTPSVSDATSSAVGKIANHGSI*
Ga0075434_1002981811	3300006871	Populus Rhizosphere	MLGMSPNGTQPNSRSHLPVTAFYKGESQGKKLPVDWKEHRFLPGSPAHVMLGGSWGSLFSQSHVVVVTTSSVSDATSSAVGKIANHGSI*
Ga0075426_115577671	3300006903	Populus Rhizosphere	QGKKLPGDWKEQRFLPGSPAHVMLGGSWVFLFSQSHVVVVTTTPSVSDATSSAVGKIANHGSI*
Ga0105247_108225702	3300009101	Switchgrass Rhizosphere	DSSGYRVLYKGESQEKKLPGDWKEQRFVPGSPAHVMLGGSWGSLFSQSHVVVVTTPSVSGATSSTVAKIANHGSI*
Ga0134128_101255335	3300010373	Terrestrial Soil	AFYKGESQEKKLPGDWKEQRFVPGSPAHVMLGGSWGSLFSQSHVVVMTTPSVSGATSSTVAKIANHGSI*
Ga0134128_111146952	3300010373	Terrestrial Soil	QDSTLPVTAFYKGESQEKKLPGDWKEQRFLPGSPAHVMLRGSWGSLFSRSHVVVVTTPSVSDATSSTVARIANHGSI*
Ga0105239_106422942	3300010375	Corn Rhizosphere	DWKEQRFLPGSPAHVMLGGSWVFLFSQSHVVVVTTTPSVSDATSSAVGKIANHGSI*
Ga0134127_109893221	3300010399	Terrestrial Soil	GDLWDISTSPVTAFYKGESQEKNSPGDWKEQRFLPGSPARVMLGGSWGSLFSQSHVVVVTTPSVSDATSSTVAIIANHGSI*
Ga0137392_107409732	3300011269	Vadose Zone Soil	MTSEVGDCRTVCLQALASDVTSPVSAFYKGESQEKKLPGDWKEQRFLPGSPAHVMLGGSWGFLFSQSHVVVVTTPSVSDATSSTVAKIANHGSI*
Ga0137389_114694011	3300012096	Vadose Zone Soil	EKKLPGDRKEQRFLPGSPAHVMLGGSWGFLFSQSHVVVVTTPSVSDATSSTVAKIANHSSI*
Ga0137360_105133991	3300012361	Vadose Zone Soil	MTSEVGDCRTVCLQALASDVTSPVSAFYKGESQEKKLPGDWKEQRFLPGSPAHVMLGGSWGFLFSQSHVVVVTTPSVSDATSSTVGKIANHGSI*
Ga0137361_103637242	3300012362	Vadose Zone Soil	MYGRDAPGSRGRPAFFAARGTCLVSAFYKGGSQEKNFPGDWKEQRFLPGSPAHVMLGGSWGFLFSQSHVVVVTTPSVSDATSSTVAKIAN
Ga0137359_100440973	3300012923	Vadose Zone Soil	YKGEKKLPGEWKEQRFLPGSSTHVLLGGSGGSLFSQSHVVVVTTPSVSDATSSTVAKIANHSSI*
Ga0137359_111776721	3300012923	Vadose Zone Soil	YKGEKKLPGEWKEQRFLPGSSTHVLLGGSGGSLFSQSHVVVVTTPSVSDATSSTVATKMPTIVLGLVAHSFFGLSEGPYS*
Ga0137416_107754013	3300012927	Vadose Zone Soil	SAFYKGESQEKKLPGDWKEQRFLPGSPAHVMLGGSWGFLFSQSHVVVVTTPSVSDATSSTVGKIANHGSI*
Ga0137404_100322277	3300012929	Vadose Zone Soil	EKKLPGDWKEQRFLPGSPAHVMLGGSWGFLFSQSHVVVVTTPSVSDATSSTVAKIANHGSI*
Ga0164300_100915751	3300012951	Soil	QLLISWEVGKARPGTYMVTAFYKGESQEKNFPGDWKEQRFLPGSPARVMLGGSWGSLSSQSHVVVVTTPSVSDATSSTVAKIANHSSI*
Ga0164303_101265291	3300012957	Soil	TWAIWAFYKGESQEKNFPGDWKEQRFLPGSPARVMLGGSWGSLFSQSHVVVVTTPSVSDATSSTVAKIANHSSI*
Ga0164303_113955611	3300012957	Soil	MQSMRFKLPISAFYKGESKEKKLPGDWKEQRFLPDSPAHEMLGGSWGFLFSQSHVVVVTTPSVSDATSSAVGKIANHGSI*
Ga0164299_103137651	3300012958	Soil	NGKPLTSWYSAFVAVWRLPYAPFYKGESQGKKLPGDWKEQRFLPGSPAHEMLGGSWGFLFSQSHVVVVTTPSVSDATSSAVGKIANHGSI*
Ga0164308_101679442	3300012985	Soil	EQRFLPDSPAHEMLGGSWGFLFSQSHVVVVTTPSVSDATSSAVGKIANHGSI*
Ga0164307_101273791	3300012987	Soil	AFYKGESQEKNFPGDWKEQRFLPGSPAHVVLGGSWGSLFSQIHVAVVTTSSVSDATSSAVAKNANHGSI*
Ga0164307_106692021	3300012987	Soil	MVTAFYKGESQEKNFPGDWKEQRFLPGSPARVMLGGSWGSLFSQSHVVVVTTPSVSDATSSTVAKIANHSSI*
Ga0164306_102867862	3300012988	Soil	MFYKGESQGKKLPGDWKEQRFLPDSPAHEMLGGSWGFLFSQSHVVVVTTPSVSDATSSAVGKIANHGSI*
Ga0182024_102378915	3300014501	Permafrost	MGPRIGNLKSGGTITAFYKGESQEENLLGDWKEQRILLVSPAYVMLGGSWGALFPPIHVAVVTTHSVSDATSSAAAKNANRGSI*
Ga0182039_100313593	3300016422	Soil	DWKEQRFLPGSPAQVMLGGSWGSLFLQIHVAAVTTPSVSDVTSSTVAKMANHGSI
Ga0193754_10180111	3300019872	Soil	SQEKKLPGDWKEQRFLPGSPAHVMLGGSWGFLFSQSHVAVVTTPSVSDATSSTVAKIANHGSI
Ga0193755_11805161	3300020004	Soil	PVAAFYKGESQEKNFPGDWKEQRFLSSSPAHVMLGGSWGSLFSQSHVAVVTTPAVSDATSSAVASANHSSI
Ga0193726_12120213	3300020021	Soil	MCFWPDFHFPITAFYKGESQEKKLPGDWKEQRFVPGSPAHVMLGGSWDFLFSQSHVAVVTTPSVSDATSSTVAKIANHGSI
Ga0210407_101848501	3300020579	Soil	SRSAFPLDSTSAISAFYKGESQGKKLPGDWKEQRFLPGSPAHVMLGGSWGFLFSQSHVVVVTTPSVSDATSSAVGKIANHGSI
Ga0210399_100269957	3300020581	Soil	VTEGVALPVICAQGPTSPISAFYKGESQEKKLPGDWKEQIFLPGSPAHAMLGGSWGFLFSQSHVVVVTTPSVSDATSSTVAKIANHGSI
Ga0210399_102331111	3300020581	Soil	HFTSPVTAFYKGESQEKNLPGDWKEQRFLPVSPAHVMLGGSWGSLFSPIHVAVVTTPSVSDATSSAVAKMPTIVLSEARGL
Ga0210399_107546132	3300020581	Soil	YKGESQEKNFPGDWKEQGFLPVSPAHVMLGGSWRSLFSPIHVAVVTTPSVSDATSSAVAKNANHGSI
Ga0210401_101929171	3300020583	Soil	QDFKFPITAFYKGESQEKNFPGDRKEHRFVPGSPAHVMLGGSWGSLFSRSHVVVVTTPAVSDATSSAVAKCQP
Ga0210401_102854973	3300020583	Soil	MLVNDPRELKWGQKSTWTVTAFYKGESQEKRLPGDWKEQRFLPGSPAQVMLGGSWGFLFSQSHVVVVTTLRFLMRQAVRLEKLPTMVLSEAQGL
Ga0210406_102317701	3300021168	Soil	KLPGDWKEQRFLPGSPAHVMLGGSWGFLFSQSHVVVVTTPSVSDATSSAVGKIANHGSI
Ga0210408_115019661	3300021178	Soil	GDWKEQIFLPGSPAHAMLGGSWGFLFSQSHVVVVTTPSVSDATSSTVAKIANHGSI
Ga0210393_101655233	3300021401	Soil	CPVSAFYKGESQEKNLPGDWKEQRFLPVSPAHVMLGGSWGSLVSPIHVAVVTTPSVSDATSSAVAKNANHSSI
Ga0210393_102061041	3300021401	Soil	IRIWEVTPFYKGESQEKKLPRDWKEQRFVPGSPAYVMSSGSWGSLFSQIHVAVVTTPSVSDATSSWVARKMPTIVLSEARGL
Ga0210387_104228601	3300021405	Soil	VRAFYKGESQEKNLPGDWKEQRFLPVSPAHVMLGGSWGSLVSPIHVAVVTTPSVSDATSSAVAKNANHSSI
Ga0210383_101674173	3300021407	Soil	GKLPVTAFYKGESQEKNLPGDWKEQRFLPVSPAHVMLGGSWGSLFSPIHVAVVTTPSVSDATSSAVAKMPTIVLSEARGL
Ga0210394_106093481	3300021420	Soil	EKRLPGDWKEQRFLPGSPAQVMLGGSWVFLFSQSHVVVVTTPSVSDATSSTVGKIANHGS
Ga0210391_101141684	3300021433	Soil	MQLSAVTPFYKGESQEKKLPRDWKEQRFVPGSPAYVMSSGSWGSLFSQIHVAVVTTPSVSDATSSWVARKMPTIVLSEARGL
Ga0210391_102058391	3300021433	Soil	RAFYKGESQEKNLPGDWKEQRFLPVSPAHVMLGGSWGSLVSPIHVAVVTTPSVSDATSSAVAKNANHSSI
Ga0210390_1000418515	3300021474	Soil	AFYKGESQEKNLPGDWKEQRFLPVSPAHVMLGGSWGSLVSPIHVAVVTTPSVSDATSSAVAKNANHSSI
Ga0242676_10326101	3300022512	Soil	AFYKGESQEKNLPGDWKEQRFVPVSPAHVMLGGSWGSLFSPIHVAVVTTPSVSDATSSAVAKMPTIVLSEARGL
Ga0242655_103306951	3300022532	Soil	TGPLTAFYKRDSQEKNFPGDWKEQRFLSGSPAHVMSGGSWGSLFSQSHVAVVTTPAVSDATSSAVAKCQP
Ga0242654_103771901	3300022726	Soil	RSGGLFLHVTGHMVFWPNFTFPITAFYKGESQEKKLPGDWKEQRFLPGSPAQVMLGGSWGSLFLRSHVAVVTTPSVSDATSSAVGKIANHGSI
Ga0224562_10033522	3300022733	Soil	NFTCTISAFYKGESQEKNLPGDWKEQGYLPVSPAHVMLGGSWGSLFSPIHVAVVTAPSVSDATSSAVAKNANHGSI
Ga0247688_10190681	3300024186	Soil	LLRAFYKGESQEKNFPGDWKEQRFLPGSPAHVMLGGSWGSLFSQIHVAFVTTSSVSDATSSTVAKNANHGSI
Ga0247672_10504751	3300024187	Soil	YKGESQGKKLPGDWKEQRFLPDSPAHEMLGGSWGFLCSQSHVVVVTTPSVSDATSSAVGKIANHGSI
Ga0247661_10072253	3300024254	Soil	MPSAFYKGESQGKKLPGDWKEQRFLPDSPAHEMLGGSWGFLFSQSHVVVVTTPSVSDATSSAVGKIANHGSI
Ga0247661_10079143	3300024254	Soil	TLLLRAFYKGESQEKNFPGDWKEQRFLPGSPAHVMLGGSWGSLFSQIHVAFVTTSSVSDATSSTVAKNANHGSI
Ga0207653_103599281	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	AFYKGESQEKKLPGDWKEQRFLPGSPAHVMLRGSWGSLFSRSHVVVVTTPSVSDATSSTVARIANHGSI
Ga0207700_115590561	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	ESQERKLPGDWKEQRFLPGSPAHVMLGGSWGFLFSQSHVVVVTTPSVSDATSRTVAKIANHGSI
Ga0207665_106114181	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MTAFYKGESQEKNFPGDWKEQRFLPGSPARVMLGGSWGSLFSQSHVVVVTTPSVSDATSSTVAKIANHSSI
Ga0207665_106570192	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	DWKEQRFLLGSPAHVMLGGSWRFLFSQSHVVVVTTPSVSDATSSAVAEIGNHGSI
Ga0209647_10113414	3300026319	Grasslands Soil	LIFGHVVCDDSTSPVSAFYKGESQEKKLPGDWKEQRFLPGSPAHVMLGGSWGFLFSQSHVVVVTTPSVSDATSSTVAKIANHGSI
Ga0257154_10760072	3300026467	Soil	RITAFYKRESQEKKLPGDWKEQRFLPGSPAHVVLGGSWGSLFSQSHIAVVTTSSVSDATSSTVAKIANHGSI
Ga0257172_10540361	3300026482	Soil	QCQYFTSPVSAFYKGESQEKKLPGDWKEQRFLPGSPAHVMLGGSWGFLFSQSHVVVVTTPSVSDATSSTVAKIANHGSI
Ga0257161_10939051	3300026508	Soil	LPGDWKEQGFLPGSPAHVMLGGSWGFLFSQSHVVVVTTPSVSDATSSTVAKIANHGSI
Ga0209648_108324752	3300026551	Grasslands Soil	PVSTWTVTAFYKGESQEKKLSGDWKEQRFLPGSPAHVMLGGSWGSLFSQSHIAVVTTSSVSDATSSTVAKIANHGSI
Ga0208724_10027643	3300027064	Forest Soil	FYKGESQEKNLPGDWKEQRFLPVSPAHVMLGGSWGSLVSPIHVAVVTTPSVSDATSSAVAKNANHSSI
Ga0209523_10082191	3300027548	Forest Soil	MTRPVNTSAFYKGESQEKKLPGDWKEQRFLPGSPAHVMLGGSWGFLFSQSHVVVATTPSVSDATSSAVAKIANHGSI
Ga0209003_10878321	3300027576	Forest Soil	KEQRFLPGSPAHVMLGGSWGFLFSQSHVVVATTPSVSDATSSAVARIANHGSI
Ga0209116_10437301	3300027590	Forest Soil	TSTVSAFYKGESQEKNLPGDWKEQRFLPGSPAQVMLGGSWGSLFSPIHVAVVTTPSVSAATSSAVAKNANHSSI
Ga0209329_10139912	3300027605	Forest Soil	QCVAQVLQVGIYPVTAFYKGESQEKNLPGDWKEQRFLPVSPAYVMLGGSWGSLFSPIHVAVVTTPSVSDATSSAVAKMPTIVLSEARGL
Ga0209117_10850121	3300027645	Forest Soil	KGESQEKKLPGDWKEQRFLPGSPAHVMSGGSWGFLFSQSHVVVVTTPSVSDATSSAVAKIANHGSI
Ga0209530_10326171	3300027692	Forest Soil	VRAFYKGESQEKNLPGDWKEQRFLPGSPAQVMLGGSWGSLFSPIHVAVVTTPSVSAATSSAVAKNANHSSI
Ga0209811_100818101	3300027821	Surface Soil	IWAFYKGESQEKNFPGDWKEQRFLPGSPAHVVLGGSWGSLFSQIHVAVVTTSSVSDATSSAVAKNANHGSI
Ga0209693_103523201	3300027855	Soil	EKKLPGDWKEQRFLPGSPAQVMLGGSWGFLFSPSHVVVVTTPSVSDATSRTVAKIANHGS
Ga0247684_10077452	3300028138	Soil	VRAFYKGESQEKNFPGDWKEQRFLPGSPAHVMLGGSWGSLFSQIHVAFVTTSSVSDATSSTVAKNANHGSI
Ga0308309_114568202	3300028906	Soil	CPVTAFYKGESQEKKLPGDWKEQRFLPGSPAQVMLGGSWGFLFSPSHVVVVTTPSVSDATSRTVAKIANHGSI
Ga0222748_10945841	3300029701	Soil	AFYKGESQEKNLPGDWKEQRFLPVSPAHVMLGGSWGSLFSPIHVAVVTTPSVSDATSSTVAKIANHGSI
Ga0265745_10140412	3300030759	Soil	MGRISPVTAFYKGESQEKNLPGDWKEQRFLPVSPAHVMLGGSWGSLVSPIHVAVVTTPSVSDATSSAVAKNANHSSI
Ga0073994_100625171	3300030991	Soil	ESQEKKLPGDWKEQRFLPGSPAHVMLGGSWGFLFSQSHVVVVTTPSVSDATSSAVAIKMPTIVLSEARSL
Ga0265754_10005972	3300031040	Soil	KKLPASGGVLAQVTCPVTAFYKGESQEKKLPGDWKEQRFLPGSPAHVMLGGSWGSLVSPIHVAVVTTPSVSDATSSAVAKNANHSSI
Ga0170834_1001907531	3300031057	Forest Soil	AISAFYKGESQEKNFPGDWKEQRFLPGSPAHVMLGGSWGFLFSQSHVAVVTTSSVSDATSSTVAEIANHGSI
Ga0307495_101674221	3300031199	Soil	LRAAATSSVRAFYKGESQEKNFPGDWKEQRFLLGSPAHVMLGGSWGSLFSQIHVAVVTTSSVSDATSSTVAKNANHGSI
Ga0170818_1120308431	3300031474	Forest Soil	KTYFKRAPFYNAFYKGESQEKKLPGDWKEQRFLPGSPAHVMLGGSWGSLFSQIHVAVVTTSSVSDATSSTVAKDANHGSI
Ga0307469_106455661	3300031720	Hardwood Forest Soil	IVRPFPTWTVSAFYKGESQGKKLPGDWKEQRFLPGSPAQVMLGGSWGSLSSQSHVVVVTTPSVSDATSSAVGKIANHGSI
Ga0310911_101171711	3300032035	Soil	KPYCLSFYKGESQEKNFPSDWKEQRFLPGSPAHVMLGGSWGTLFLQIHVAAVTTPSVSDATSSTVAKMANHGSI
Ga0307470_101127831	3300032174	Hardwood Forest Soil	PVPANGITARPACRSLATFPVTAFYKGESQEKNFPGDWKEQRFLPGSPARVMLGGSWGSLFSQSHVVVVTTPSVSDATSSTVAKIANHSSI
Ga0307471_1001776103	3300032180	Hardwood Forest Soil	MTWEVTAFYKGESQEKKLPGDWKEQRFLPGSPAHVMFGGSWGFLFSQSHVVVVTTPSVSDATSRTVAKIANHGSI
Ga0307471_1011653722	3300032180	Hardwood Forest Soil	LVPTFPVTAFYKGESQEKNFPGDWKEQRCLPGSPAHVMLGGSWGSLFSQSHIAVVTTSSVSDATSSTVATKMPTIVLSEARGL
Ga0307471_1014395782	3300032180	Hardwood Forest Soil	PITAFYKGESQEKNFPGDWKEQRFLPGSPARVMLGGSWGSLFSQSHVVVVTTPSVSDATSSTVAKIANHSSI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F083149

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences