Metagenome / Metatranscriptome Family F083109

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F083109
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	53 residues
Representative Sequence	MNKALLALSIMILSGSLLAQESPITPRAERVQISEGPEVPLVGGYLTVIRWTVN
Number of Associated Samples	82
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	97.35 %
% of genes near scaffold ends (potentially truncated)	94.69 %
% of genes from short scaffolds (< 2000 bps)	92.92 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (93.805 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (29.203 % of family members)
Environment Ontology (ENVO)	Unclassified (30.973 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (55.752 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 20.73% β-sheet: 25.61% Coil/Unstructured: 53.66%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.48
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.48
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF03150	CCP_MauG	7.08
PF10282	Lactonase	1.77
PF04542	Sigma70_r2	1.77
PF01878	EVE	0.88
PF00873	ACR_tran	0.88
PF03713	DUF305	0.88
PF03551	PadR	0.88
PF17189	Glyco_hydro_30C	0.88
PF03807	F420_oxidored	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG1858	Cytochrome c peroxidase	Posttranslational modification, protein turnover, chaperones [O]	7.08
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	1.77
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	1.77
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	1.77
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	1.77
COG1673	Predicted RNA-binding protein, contains PUA-like EVE domain	General function prediction only [R]	0.88
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.88
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.88
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.88
COG2947	Predicted RNA-binding protein, contains EVE domain	General function prediction only [R]	0.88
COG3544	Uncharacterized conserved protein, DUF305 family	Function unknown [S]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	93.81 %
Unclassified	root	N/A	6.19 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	93.81 %
Unclassified	root	N/A	6.19 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	93.81 %
Unclassified	root	N/A	6.19 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	17.70 %
Unclassified	root	N/A	6.19 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	3.54 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	17.70 %
Unclassified	root	N/A	6.19 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	3.54 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	17.70 %
Unclassified	root	N/A	6.19 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	3.54 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	17.70 %
Unclassified	root	N/A	6.19 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	3.54 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001083\|JGI12678J13193_1006370	Not Available	507	Open in IMG/M
3300001180\|JGI12695J13573_1003266	All Organisms → cellular organisms → Bacteria	1094	Open in IMG/M
3300001593\|JGI12635J15846_10093317	All Organisms → cellular organisms → Bacteria	2173	Open in IMG/M
3300001867\|JGI12627J18819_10107593	All Organisms → cellular organisms → Bacteria	1150	Open in IMG/M
3300001867\|JGI12627J18819_10241043	All Organisms → cellular organisms → Bacteria	727	Open in IMG/M
3300002907\|JGI25613J43889_10026884	All Organisms → cellular organisms → Bacteria	1628	Open in IMG/M
3300002907\|JGI25613J43889_10048200	All Organisms → cellular organisms → Bacteria	1201	Open in IMG/M
3300005468\|Ga0070707_100491605	All Organisms → cellular organisms → Bacteria	1189	Open in IMG/M
3300005533\|Ga0070734_10214516	All Organisms → cellular organisms → Bacteria	1108	Open in IMG/M
3300005542\|Ga0070732_10857109	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300005610\|Ga0070763_10627530	Not Available	625	Open in IMG/M
3300005921\|Ga0070766_10024319	All Organisms → cellular organisms → Bacteria	3242	Open in IMG/M
3300006173\|Ga0070716_101748349	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	514	Open in IMG/M
3300006175\|Ga0070712_101569753	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	575	Open in IMG/M
3300006893\|Ga0073928_10517130	All Organisms → cellular organisms → Bacteria	854	Open in IMG/M
3300006893\|Ga0073928_10835999	All Organisms → cellular organisms → Bacteria	634	Open in IMG/M
3300007265\|Ga0099794_10367956	All Organisms → cellular organisms → Bacteria	749	Open in IMG/M
3300010371\|Ga0134125_12774460	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	532	Open in IMG/M
3300010865\|Ga0126346_1183450	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
3300011120\|Ga0150983_10303295	All Organisms → cellular organisms → Bacteria	786	Open in IMG/M
3300011120\|Ga0150983_10720519	All Organisms → cellular organisms → Bacteria	1070	Open in IMG/M
3300011120\|Ga0150983_10926603	All Organisms → cellular organisms → Bacteria	619	Open in IMG/M
3300011120\|Ga0150983_10998263	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	503	Open in IMG/M
3300011120\|Ga0150983_12064663	All Organisms → cellular organisms → Bacteria	804	Open in IMG/M
3300011120\|Ga0150983_14177737	All Organisms → cellular organisms → Bacteria	1171	Open in IMG/M
3300011269\|Ga0137392_10477545	All Organisms → cellular organisms → Bacteria	1035	Open in IMG/M
3300011270\|Ga0137391_10635269	All Organisms → cellular organisms → Bacteria	892	Open in IMG/M
3300011270\|Ga0137391_10702648	All Organisms → cellular organisms → Bacteria	840	Open in IMG/M
3300011411\|Ga0153933_1113726	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300012089\|Ga0153924_1053552	All Organisms → cellular organisms → Bacteria	788	Open in IMG/M
3300012180\|Ga0153974_1121709	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300012205\|Ga0137362_10814078	All Organisms → cellular organisms → Bacteria	800	Open in IMG/M
3300012361\|Ga0137360_10328172	All Organisms → cellular organisms → Bacteria	1276	Open in IMG/M
3300012362\|Ga0137361_10645194	All Organisms → cellular organisms → Bacteria	969	Open in IMG/M
3300012582\|Ga0137358_10166461	Not Available	1503	Open in IMG/M
3300012683\|Ga0137398_10329976	All Organisms → cellular organisms → Bacteria	1030	Open in IMG/M
3300012685\|Ga0137397_11292550	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	519	Open in IMG/M
3300012918\|Ga0137396_10424125	All Organisms → cellular organisms → Bacteria	986	Open in IMG/M
3300012923\|Ga0137359_11240641	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	633	Open in IMG/M
3300012924\|Ga0137413_10630646	All Organisms → cellular organisms → Bacteria	805	Open in IMG/M
3300012927\|Ga0137416_10875883	All Organisms → cellular organisms → Bacteria	797	Open in IMG/M
3300012927\|Ga0137416_10985463	All Organisms → cellular organisms → Bacteria	752	Open in IMG/M
3300012927\|Ga0137416_10999083	All Organisms → cellular organisms → Bacteria	747	Open in IMG/M
3300015052\|Ga0137411_1288810	All Organisms → cellular organisms → Bacteria	695	Open in IMG/M
3300017936\|Ga0187821_10034126	All Organisms → cellular organisms → Bacteria	1801	Open in IMG/M
3300020583\|Ga0210401_11064229	All Organisms → cellular organisms → Bacteria	667	Open in IMG/M
3300021088\|Ga0210404_10677639	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300021151\|Ga0179584_1475027	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	573	Open in IMG/M
3300021168\|Ga0210406_10195521	All Organisms → cellular organisms → Bacteria → Acidobacteria	1679	Open in IMG/M
3300021168\|Ga0210406_10578308	All Organisms → cellular organisms → Bacteria	879	Open in IMG/M
3300021170\|Ga0210400_11468588	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	541	Open in IMG/M
3300021171\|Ga0210405_10320699	All Organisms → cellular organisms → Bacteria	1223	Open in IMG/M
3300021171\|Ga0210405_11368861	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300021180\|Ga0210396_10684758	Not Available	886	Open in IMG/M
3300021180\|Ga0210396_11684754	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300021307\|Ga0179585_1028974	All Organisms → cellular organisms → Bacteria	2786	Open in IMG/M
3300021307\|Ga0179585_1088902	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	549	Open in IMG/M
3300021403\|Ga0210397_11351887	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	553	Open in IMG/M
3300021405\|Ga0210387_10183727	All Organisms → cellular organisms → Bacteria	1807	Open in IMG/M
3300021406\|Ga0210386_10738858	All Organisms → cellular organisms → Bacteria	847	Open in IMG/M
3300021406\|Ga0210386_11734563	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	515	Open in IMG/M
3300021407\|Ga0210383_10787094	All Organisms → cellular organisms → Bacteria	815	Open in IMG/M
3300021420\|Ga0210394_10611708	All Organisms → cellular organisms → Bacteria	957	Open in IMG/M
3300021432\|Ga0210384_10257429	All Organisms → cellular organisms → Bacteria	1571	Open in IMG/M
3300021433\|Ga0210391_10120976	All Organisms → cellular organisms → Bacteria	2061	Open in IMG/M
3300021474\|Ga0210390_10661488	All Organisms → cellular organisms → Bacteria	872	Open in IMG/M
3300021479\|Ga0210410_10296609	All Organisms → cellular organisms → Bacteria	1450	Open in IMG/M
3300021479\|Ga0210410_11696539	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	525	Open in IMG/M
3300021479\|Ga0210410_11744440	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300021559\|Ga0210409_10233002	All Organisms → cellular organisms → Bacteria	1670	Open in IMG/M
3300022506\|Ga0242648_1044632	All Organisms → cellular organisms → Bacteria	659	Open in IMG/M
3300022513\|Ga0242667_1026962	All Organisms → cellular organisms → Bacteria	636	Open in IMG/M
3300022522\|Ga0242659_1125278	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	528	Open in IMG/M
3300022528\|Ga0242669_1034785	All Organisms → cellular organisms → Bacteria	805	Open in IMG/M
3300022528\|Ga0242669_1044353	All Organisms → cellular organisms → Bacteria	742	Open in IMG/M
3300022708\|Ga0242670_1082938	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	505	Open in IMG/M
3300022712\|Ga0242653_1052236	All Organisms → cellular organisms → Bacteria	667	Open in IMG/M
3300024288\|Ga0179589_10203550	All Organisms → cellular organisms → Bacteria	866	Open in IMG/M
3300024288\|Ga0179589_10317980	All Organisms → cellular organisms → Bacteria	703	Open in IMG/M
3300024330\|Ga0137417_1387669	All Organisms → cellular organisms → Bacteria	3146	Open in IMG/M
3300024330\|Ga0137417_1464892	All Organisms → cellular organisms → Bacteria	2136	Open in IMG/M
3300025910\|Ga0207684_10368109	All Organisms → cellular organisms → Bacteria	1237	Open in IMG/M
3300025928\|Ga0207700_10558428	Not Available	1017	Open in IMG/M
3300026371\|Ga0257179_1031542	All Organisms → cellular organisms → Bacteria	649	Open in IMG/M
3300026551\|Ga0209648_10057276	All Organisms → cellular organisms → Bacteria → Acidobacteria	3315	Open in IMG/M
3300026551\|Ga0209648_10562048	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	635	Open in IMG/M
3300027050\|Ga0209325_1033125	Not Available	619	Open in IMG/M
3300027266\|Ga0209215_1003308	All Organisms → cellular organisms → Bacteria → Acidobacteria	1771	Open in IMG/M
3300027371\|Ga0209418_1063237	All Organisms → cellular organisms → Bacteria	660	Open in IMG/M
3300027502\|Ga0209622_1007234	All Organisms → cellular organisms → Bacteria → Acidobacteria	1818	Open in IMG/M
3300027548\|Ga0209523_1066108	All Organisms → cellular organisms → Bacteria	743	Open in IMG/M
3300027565\|Ga0209219_1150991	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300027576\|Ga0209003_1021194	All Organisms → cellular organisms → Bacteria	1056	Open in IMG/M
3300027576\|Ga0209003_1062296	All Organisms → cellular organisms → Bacteria	677	Open in IMG/M
3300027603\|Ga0209331_1131739	All Organisms → cellular organisms → Bacteria	600	Open in IMG/M
3300027884\|Ga0209275_10847101	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	527	Open in IMG/M
3300027903\|Ga0209488_10626727	All Organisms → cellular organisms → Bacteria	778	Open in IMG/M
3300028536\|Ga0137415_10004467	All Organisms → cellular organisms → Bacteria	13844	Open in IMG/M
3300028536\|Ga0137415_11201084	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	573	Open in IMG/M
3300029636\|Ga0222749_10144251	All Organisms → cellular organisms → Bacteria	1155	Open in IMG/M
3300029636\|Ga0222749_10754416	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	532	Open in IMG/M
3300030950\|Ga0074034_11212046	All Organisms → cellular organisms → Bacteria	715	Open in IMG/M
3300031753\|Ga0307477_10904293	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
3300031754\|Ga0307475_10341837	All Organisms → cellular organisms → Bacteria	1202	Open in IMG/M
3300031754\|Ga0307475_10956932	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300031754\|Ga0307475_11023565	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300031823\|Ga0307478_10488443	All Organisms → cellular organisms → Bacteria	1025	Open in IMG/M
3300031823\|Ga0307478_10725011	All Organisms → cellular organisms → Bacteria	833	Open in IMG/M
3300031823\|Ga0307478_11244113	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300031962\|Ga0307479_12000095	Not Available	528	Open in IMG/M
3300031962\|Ga0307479_12044628	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	521	Open in IMG/M
3300032174\|Ga0307470_10178913	All Organisms → cellular organisms → Bacteria	1331	Open in IMG/M
3300032174\|Ga0307470_11796468	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	519	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.35%
Host-Associated	Host-Associated	2.65%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	94.69%
Aquatic	Environmental → Aquatic	2.65%
Fungi	Host-Associated → Fungi	2.65%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.69%
Mycelium	Host-Associated → Fungi → Mycelium	2.65%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.77%
Freshwater	Environmental → Aquatic → Freshwater	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	69.91%
Loam	Environmental → Terrestrial → Soil → Loam	24.78%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	2.65%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.77%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.89%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	38.94%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.43%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	20.35%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.42%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.54%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	2.65%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.77%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	29.20%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	23.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	17.70%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	9.73%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.42%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.54%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.65%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	2.65%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.77%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.77%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.89%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.89%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001083	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M1	Environmental	Open in IMG/M
3300001180	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M3	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002907	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010865	Boreal forest soil eukaryotic communities from Alaska, USA - C3-3 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011411	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ017 MetaG	Host-Associated	Open in IMG/M
3300012089	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ008 MetaG	Host-Associated	Open in IMG/M
3300012180	Attine ant fungus gardens microbial communities from Georgia, USA - TSGA058 MetaG	Host-Associated	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015052	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021151	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_06_16RNAfungal (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021307	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_06_16RNAfungal (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022506	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-26-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022513	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022522	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022528	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022708	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022712	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-32-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026371	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-B	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027050	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027266	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027371	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027502	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027548	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027565	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027576	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027603	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030950	Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - Mineral N3 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12678J13193_10063702	3300001083	Forest Soil	MVIMTLSGSLLSQESPITPRPERVQISEGPGVPLVGGYLTVIRWTVNNPGGL
JGI12695J13573_10032661	3300001180	Forest Soil	MNKALLALSILILSGNLLAQESPITPRPERVQISEGPEVPLAGGHLTVIRWTVN
JGI12635J15846_100933172	3300001593	Forest Soil	MNKVLLTLSIMILSGSLLAQESPITPRAERVQISGGPEVPLVGGYLTVIRWTVNNPGGLPVHYGLVH
JGI12627J18819_101075932	3300001867	Forest Soil	MNKALLALSIMILSGSLLAQESPITPRAERVQISEGPEVPL
JGI12627J18819_102410433	3300001867	Forest Soil	MNKALLALSILILSGSLLAQESPITPRAERVQISEGPEVPLAGGYLTVIRWTVNNPGGLPVHYGV
JGI25613J43889_100268842	3300002907	Grasslands Soil	MNKVLLTLSMMVLSGSLLAQESPITPRAERVQISEGPEVPLVGGYLTVIRW
JGI25613J43889_100482002	3300002907	Grasslands Soil	MNKALLTLSIMILSGSLLAQESPITPRAERVQISEGPEVPLVGGYLTVIRW
Ga0070707_1004916051	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MKKVLLTLSMLVLSASLLAQESPVTPRAVQVQISAGPEVPLVGGYLTVIRWTVNNPGGLPVHY
Ga0070734_102145162	3300005533	Surface Soil	MNKVLLTLSIMVLSGSLLAQESPITPRAARVQISEGPEVPLVGGYLTV
Ga0070732_108571092	3300005542	Surface Soil	MNKALLALSITLLSSSLLAQESPITPRADRVQISEGPEVPLVGRYLTVIRWTVNNPGGLPVHYAVVRYGKNPK
Ga0070763_106275301	3300005610	Soil	MNKALLALLIMILSGSLVAQESPITPKAERVQISEGPEVP
Ga0070766_100243191	3300005921	Soil	VNKALLALSLTILSHSLLAQESPTAPRAERVQISEGPEVPLVGGYLTV
Ga0070716_1017483491	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MNKALLALSIMVFSANMLAQESPITPRAARVQISDGPEVPLVGGYLTVIRWTVNNP
Ga0070712_1015697532	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MNKALLALSIMILSGSLLAQESPITPRAERVQISEGP
Ga0073928_105171301	3300006893	Iron-Sulfur Acid Spring	MTKILLTMVIMTLSGSLLSQESPITPRPERVRISEGPGVPLVGGYLTVIRWTVSN
Ga0073928_108359991	3300006893	Iron-Sulfur Acid Spring	MNKALLALSITILSGSLLAQESPITPRAERYRSARGQKS
Ga0099794_103679562	3300007265	Vadose Zone Soil	MNKVLLTLSMMVLSGSLLAQESPITPRAERVQISEGPEVPLVGGYLTVIRWTVNNPGG
Ga0134125_127744601	3300010371	Terrestrial Soil	MNKALLALSIMILSGSLLAQESPITPRAERVQISEGPEVPLAG
Ga0126346_11834502	3300010865	Boreal Forest Soil	MNKVLLTLSTMALSSSLLAQESPITTKAKRVQINEGPEIALAGPYLTV
Ga0150983_103032952	3300011120	Forest Soil	MNKALLALSITILSGSLLAQESPITPRAERVQISEGPEVPLVGDYLTVIRWTV
Ga0150983_107205192	3300011120	Forest Soil	MMNRTLLALSITILSGSLLAQESPTTPEAKRVQISE
Ga0150983_109266031	3300011120	Forest Soil	MNKVLLALLITILSGSLLAQESPITPKAERVQISKGPEVPLV
Ga0150983_109982631	3300011120	Forest Soil	MNMNKVLLTLSIMILSGNLLAQESPITPRAERVQISGGPEVPLVDGYLT
Ga0150983_120646632	3300011120	Forest Soil	MNKALLTLSIMVLSGSLLAQESPITPRAARVQISAGPEVPLVGGYLTVIRWTVNNPGGLPVHYG
Ga0150983_141777371	3300011120	Forest Soil	MNKALLTLSIMILSGSLLAQESPITPRAARVQISAGPEVPLVGGYLTVIRWTVNNP
Ga0137392_104775452	3300011269	Vadose Zone Soil	MNKALLALSIMVLSGNLLAQESPITPRAERVQISGGPEVPLVGGYLTVIRWTVNNPGGLPVHYG
Ga0137391_106352691	3300011270	Vadose Zone Soil	MNKVLLTVSIMVTFIGSLLAQESPITRKAGRVKITEGPEVALTGGYLTVIRWTVNNPGGLPTHYGVVHY
Ga0137391_107026481	3300011270	Vadose Zone Soil	MNKVLVTLSIMVLSGSLLAQESPTTPKAARVQMSRG
Ga0153933_11137261	3300011411	Attine Ant Fungus Gardens	MNRALLALSITILSGSLPAQESPITPRAERVQISEGPEVPLVGGYLTVIRWTVNNPGGLPVHYGVVH
Ga0153924_10535521	3300012089	Attine Ant Fungus Gardens	MNKALLALSILIFAGSLLAQESPITARAERVRISE
Ga0153974_11217091	3300012180	Attine Ant Fungus Gardens	MNKALLALSIMILSGSLLAQESPITPRAERVQISEGPEVPLVGGYLTVIRWTVNNPGG
Ga0137362_108140782	3300012205	Vadose Zone Soil	MNKVLLTLSMMVLSGSLLAQESPITPRAERVQISEGPEVPLVGGYLTVIRWT
Ga0137360_103281722	3300012361	Vadose Zone Soil	MNKVLLTLSMMVLSGSLLAQESPITPRAERVQISEGPEVPLVGGYL
Ga0137361_106451941	3300012362	Vadose Zone Soil	MKRALLALSIMILSGSLRAQESPVTPRAERVQISDGPEVPLVGGYLTVVRWTVNNPGGLPVHYGV
Ga0137358_101664611	3300012582	Vadose Zone Soil	MNKVLVALSIMVLSGNLFAQESPITGKAKRVQITQGPEIALAGGYLTVV*
Ga0137398_103299761	3300012683	Vadose Zone Soil	MNKVLVALSIMVLSGNLFAQESPITGKAKRVQITQGPEIALAGGYLT
Ga0137397_112925501	3300012685	Vadose Zone Soil	MNKVLLTLPIMVLSSSLLAQESPVTPRAERVQIREGPEVPLVGGY
Ga0137396_104241252	3300012918	Vadose Zone Soil	MNKVLLTVSIMVAFIGSLLAQDSPITRKAGRVKITEGPEVALTGGYLTDIRWTVNNPG
Ga0137359_112406411	3300012923	Vadose Zone Soil	MNKVLLTLSMMVLSGSLLAQESPITPRAERVQISEGPEVPLVGGYLTVIRWTVNNPGGL
Ga0137413_106306462	3300012924	Vadose Zone Soil	MTMNKVLLTLSIMILSGSLRAQESPITPKAERLEISEGPEVPLVGGYLTVIRWTVNNPG
Ga0137416_108758832	3300012927	Vadose Zone Soil	MNKALLALSITILSGRLLAQESPITPRAERVKISEGPEVPLVGGYLTVIRWTVNNPGG
Ga0137416_109854631	3300012927	Vadose Zone Soil	MNKVLLTASILVVFIGSLLAQENPTTPRAAHVQITQGPEIALAGGYLTVIRWTVNNPGG
Ga0137416_109990832	3300012927	Vadose Zone Soil	MNKALLALSITILSGSLLAQESPITPRAERVQISEGPEVPLVGGYL
Ga0137411_12888101	3300015052	Vadose Zone Soil	MNKALLALLIMVFSGSMLAQESPITPRAARVQISDGPEVPLVGGYLTVIRWEVNNPGGLPVHYGVGALRGC
Ga0187821_100341261	3300017936	Freshwater Sediment	MNKVLLTLSTIVVLSGSLLAQESPITPKAERVQISQGPEVPLVGGYLTVIRWTVNNPGGLPVHYGVVHY
Ga0210401_110642292	3300020583	Soil	MNKVLLTLSIMILSGNLLAQESPITPRAERVQISGG
Ga0210404_106776391	3300021088	Soil	MNKALLALSIMILSGSLLALAQESPITPRAERVKIREG
Ga0179584_14750272	3300021151	Vadose Zone Soil	MNKALLTLSIMILSGSLLAQESPITPRAERVQISEGPEVPLVGGYLTVIRWT
Ga0210406_101955213	3300021168	Soil	MNKALLALSIMILSGSLLAQESPITPRPERVQISEGPEVPLV
Ga0210406_105783082	3300021168	Soil	MNRALLALSITILSGSLLAQESPVTPRAERVQISEGPEVPLVGGYLTVI
Ga0210400_114685881	3300021170	Soil	MNKALLTLSIMALSCSLLAQESPITPRAARVQISAGPEVPLV
Ga0210405_103206991	3300021171	Soil	MNKVLLTLSFMVLSGSLLAQESPITPRAARVQISAGPEVPLVGGYLTVIRWTVNNPGGLPVHLRGCALWYGSKRFEPNRQKSD
Ga0210405_113688611	3300021171	Soil	MNKALLALSITILSGSLLAQESPITPRAERVKISEGPEVPLVGGYLTVIRWTVNNPGGLPVHYG
Ga0210396_106847581	3300021180	Soil	MNKALLALSITILSGSLLAQESPITPRAERVQISEGPEVPRVSGYL
Ga0210396_116847541	3300021180	Soil	MVLSGSLLAQESPITPRAARVQISAGPEVPLVGGYLTVIRWTVNNPGGLPVHLRGCALWYGSK
Ga0179585_10289742	3300021307	Vadose Zone Soil	MNKVLLTASIMVAFIGSLLAQESPITRKAGRVKITEGPEVALTGGYLTVIRWTVNNP
Ga0179585_10889022	3300021307	Vadose Zone Soil	MNKALLTLSILILSGSLLAQESPITPRAERVQISEGPEVPLVGGYLTVIRW
Ga0210397_113518871	3300021403	Soil	MNKALLALLIMILSGSLVAQESPITPKAERVQISEGPEVPLVGGYLTLSDGR
Ga0210387_101837272	3300021405	Soil	MNKALLALSITILSGSLLVQESPISPRAERVQISEGPEIPLVGGYLTVIRW
Ga0210386_107388582	3300021406	Soil	MNKVLLTLSFMVLSGSLLAQESPITPRAARVQISAGPEVPL
Ga0210386_117345632	3300021406	Soil	MNKALLGLSIMILSGSLLALAQESPITPRAERVQISGGPEVPLVGGYLTVIRWT
Ga0210383_107870942	3300021407	Soil	MKKALLALPITIWSGSLFAQESPITPRAERVQISEGP
Ga0210394_106117083	3300021420	Soil	MNKVLLTLSIMILSGNLLAQESPITPRAERVQISGGPEVP
Ga0210384_102574292	3300021432	Soil	MNKALLALSIIILSGNLLAQESPVTPRAERVRISDGPEVPLVGGYLTV
Ga0210391_101209762	3300021433	Soil	MNKALLALSIMILSGSLLAQESPITPRAERVQISGGPEVPLVGGYLTVIRWTVNNPGG
Ga0210390_106614882	3300021474	Soil	MNKVLLTLSFMVLSGSLLAQESPITPRAARVQISAGPEVPLVGGYLTVIRWTVNNPGGLPVHLRGC
Ga0210410_102966092	3300021479	Soil	MNKALLTLSIMILSGSLLAQESPITPRAARVQISAGPEVPLVGGYLTVIRWTVNN
Ga0210410_116965392	3300021479	Soil	MNKALLALSIMILSGSLLAQESPITPRAERVQISEGPEVPLVGGYLTVIRWTVNNPGGLPVHYGVV
Ga0210410_117444402	3300021479	Soil	MNKVLLALSIMILSGSLPAQESPITPRAERVQISEGPGVPLVGGYLTVIRWTVNNPGGLPVHYGVVHY
Ga0210409_102330021	3300021559	Soil	MNKALLALSITILSGSLLAQESPITPRAERVKISEGPEVPLVGGYLTVIRWTVNNPGGLPVHYGVVHY
Ga0242648_10446322	3300022506	Soil	MNKALLALSIMVLSGNLLAQESPITPRAERVQISSGPEVPLVGGYLTVIRW
Ga0242667_10269621	3300022513	Soil	MNKALLALSTTILSGSLLAQESPITPRAERAQISEGPEVPLV
Ga0242659_11252782	3300022522	Soil	VNKVLLALSITILSSSLLAQESPVAPRAERVQISEGPEVPLVGGYL
Ga0242669_10347852	3300022528	Soil	MNKVLLALLITILSGILLAQESPITPKAERVQISEGPEVPLVGGYLTVIRWTVN
Ga0242669_10443531	3300022528	Soil	MNKALLALSIMILSGSLLAQESPITPRAERVQISEGPEVPLVGGYLTVIRWTVNN
Ga0242670_10829381	3300022708	Soil	MNKALLALSIMILSGSLLAQESPITPRAERVQISEGPEVPLVGGYLTVIRWTVN
Ga0242653_10522361	3300022712	Soil	MNKALLGLSIMILSGSLLALAQESPITPRAERVQISGGPEVPLVGGYLTVIRWTVNNPGGLPVHYG
Ga0179589_102035501	3300024288	Vadose Zone Soil	MNKVLVALSIMVLSGNLFAQESPITGKAKRVQITQGPEIALAGGYLTVVRWTVNNPGGLPVHYGVVHY
Ga0179589_103179802	3300024288	Vadose Zone Soil	MKKVLLTLSMLVLSGSLLAQESPVTPRAVRVQISAGPEVPLVGGYLTVIRWTVNNPGGLPVHYGVVHYRTDRKDLNQT
Ga0137417_13876692	3300024330	Vadose Zone Soil	MNKALLALSITLLSGSLLAQESPITPRPERVQISEGPEVRWWVAI
Ga0137417_14648924	3300024330	Vadose Zone Soil	MNKVLLILSTMVLSSSLLAQESPITTRAKRVQISEGPEIALAGPYLTVIRWTVKNPGGLPCTMRLCTLVRIEKT
Ga0207684_103681092	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MNKALLALSIMILSGSLLAQESPITPRAERVQISGGPEVPLVGGYLTV
Ga0207700_105584282	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MNKALLALSIMILSGSPLAQESPITPKPERVQISEGPEVPLVGGYLTVIRWMGNNPGGLPVH
Ga0257179_10315422	3300026371	Soil	MNKALLTLSIMILSGSLLAQESPITPRAERVQISEGPEVPLVGGYLTVIRWTVNNPGGLP
Ga0209648_100572762	3300026551	Grasslands Soil	MNKALLALSIMILSGSLLAQESPITPRAELVQISEGPEVPLVGRYLTVIRWTVNNPGGLPVH
Ga0209648_105620482	3300026551	Grasslands Soil	MNKVLLTLSMMVLSGSLLAQESPITPRAERVQISEGPEVPLVGGYLTVIRWTVNNPGGLP
Ga0209325_10331251	3300027050	Forest Soil	MNKALLALSILILCGSLLAQESPITPRAERVQISEGPEVPLVGGYLTVIRWTVNNPGG
Ga0209215_10033082	3300027266	Forest Soil	MNKARLALSIMILRGSLLAQESPITPRPEQVQISEGPEVPLVGGYLTVIRWTVNNPGGLPVHYAVVHYGIDP
Ga0209418_10632371	3300027371	Forest Soil	MNKVLLALLILILSGSLVAQESPITPKAERVQISEGPEVPLVGGYLTVIRW
Ga0209622_10072343	3300027502	Forest Soil	MNKALLALSILILSGSLLAQESPITPRAERVQISEGPEVPLAGGY
Ga0209523_10661082	3300027548	Forest Soil	MNKVLLTLSVMLLSSSLLAQESPITPRAERVQISEGPEVPLVGGYLTVIRWTVN
Ga0209219_11509912	3300027565	Forest Soil	MNKALLALSIMILSGSLLAQESPITPRAERVQISVGPEVPLVGGYLTVIRWTVNNPGGLPVHYGV
Ga0209003_10211942	3300027576	Forest Soil	MNKALLALSIMILSGSLLAQESPITPRAERVQISEGPEVPLVGGYLTVIRWTVNNPGGLPVHYAVVRYGKDPKD
Ga0209003_10622962	3300027576	Forest Soil	MNKVLLTLSIIVFGGHLLAQESPITPRAERVQISEGPEVPLVGGYLTVIRWTVNNPGGLPVHYGLVHYG
Ga0209331_11317391	3300027603	Forest Soil	MKKVLLTLSIMVLSGSLLAQESPKTPKAARVQIIQGPEIAL
Ga0209275_108471011	3300027884	Soil	MNKIHLTLSIMLLSGWLLAQESPITPRSEPVQISAGPEVPLVG
Ga0209488_106267272	3300027903	Vadose Zone Soil	MNKVLLTLSIMVLSGSLLAQESPITPRAARVQISEGPEVPLVGGYLTVIRWTVNNPAGFP
Ga0137415_100044671	3300028536	Vadose Zone Soil	MNKALLTLSIMILSGSLLAQESPITPRAERVQISEGPEVPLVG
Ga0137415_112010841	3300028536	Vadose Zone Soil	MNKALLTLSIMILSGSLLAQESPITPRAERVQISEGPEVPLVGGYLTVIRWTV
Ga0222749_101442512	3300029636	Soil	MNKVLLALLITILSGSLLAQESPITPRAERVQISEGPE
Ga0222749_107544161	3300029636	Soil	MNKALLALSIMILSGSLLAQESPITPRAERVQISGGPEVPLV
Ga0074034_112120461	3300030950	Soil	MNKVLLALSITILSGSLFAQESPITPRAERAQISEGPEVPLVGGYL
Ga0307477_109042931	3300031753	Hardwood Forest Soil	MNKVLLTLSTMVLSGSLPAQESPITPRVERVQISEGPEVPLV
Ga0307475_103418371	3300031754	Hardwood Forest Soil	MNRVLLTMSIMVLSGSLLAQESPITPRAERVQISEGPEVPLVGGYLTVIR
Ga0307475_109569322	3300031754	Hardwood Forest Soil	MNNALLTLSIMIVSGSLLAQESPITPRAERVQISEGPEVPL
Ga0307475_110235651	3300031754	Hardwood Forest Soil	MNKALLALSIMILSGSLLAQESPITPRPERVQISEGPEVPLVGGY
Ga0307478_104884432	3300031823	Hardwood Forest Soil	MNKALLALSIMTLSGSLLAQESPITPRAERVQISEGPEVPLV
Ga0307478_107250112	3300031823	Hardwood Forest Soil	MNKALLALSIMILSGGNLLAQESPITPRAEKVQISEGPEVPLVGG
Ga0307478_112441131	3300031823	Hardwood Forest Soil	MNNALLTLSIMILSGSLLAQESPITPRAERVQISEGPEVPLVGGYLTVIRWTVNNPG
Ga0307479_120000951	3300031962	Hardwood Forest Soil	MNKALLALSIMILSGSLLAQESPITPRPERVQISEGPEVPLVGGYLTVIR
Ga0307479_120446281	3300031962	Hardwood Forest Soil	MNKVLLTLSIMVLSGSLLAQESPITPRAERVQISGAPEVPLVGGYLTV
Ga0307470_101789131	3300032174	Hardwood Forest Soil	MNKALLGLSIMILSGSLLALAQESPITPKAERVQISEGPEVPLVGGYLTVIRWTVNNPGG
Ga0307470_117964681	3300032174	Hardwood Forest Soil	MNKALLALSITILSGSLIAQESPITPRAERVQISEGPEVPLVGG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F083109

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences