Metagenome Family F083094

Overview

Basic Information

• Family ID: F083094
• Family Type: Metagenome
• Number of Sequences: 113
• Average Sequence Length: 39 residues
• Representative Sequence: RNHASTADRRARQKPAAMSMLQCSNRSTVAAQKFVTQ
• Number of Associated Samples: 76
• Number of Associated Scaffolds: 113

Quality Assessment

• Transcriptomic Evidence: No
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 0.00 %
• % of genes near scaffold ends (potentially truncated): 100.00 %
• % of genes from short scaffolds (< 2000 bps): 75.22 %
• Associated GOLD sequencing projects: 67
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.24

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (70.796 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil (23.009 % of family members)
• Environment Ontology (ENVO): Unclassified (61.947 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (58.407 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 36.92%
  β-sheet: 0.00%
  Coil/Unstructured: 63.08%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF05598	DUF772	5.31
PF13751	DDE_Tnp_1_6	4.42
PF03401	TctC	3.54
PF01144	CoA_trans	3.54
PF00005	ABC_tran	3.54
PF00067	p450	3.54
PF13340	DUF4096	2.65
PF00536	SAM_1	2.65
PF13683	rve_3	1.77
PF13193	AMP-binding_C	1.77

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG2057	Acyl-CoA:acetate/3-ketoacid CoA transferase, beta subunit	Lipid transport and metabolism [I]	3.54
COG2124	Cytochrome P450	Defense mechanisms [V]	3.54
COG1788	Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit	Lipid transport and metabolism [I]	3.54
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	3.54
COG4670	Acyl CoA:acetate/3-ketoacid CoA transferase	Lipid transport and metabolism [I]	3.54
COG1197	Transcription-repair coupling factor (superfamily II helicase)	Transcription [K]	1.77
COG0840	Methyl-accepting chemotaxis protein (MCP)	Signal transduction mechanisms [T]	1.77
COG3931	Predicted N-formylglutamate amidohydrolase	Amino acid transport and metabolism [E]	0.88
COG3768	Uncharacterized membrane protein YcjF, UPF0283 family	Function unknown [S]	0.88
COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	Mobilome: prophages, transposons [X]	0.88

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	70.80 %
Unclassified	root	N/A	29.20 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	70.80 %
Unclassified	root	N/A	29.20 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	70.80 %
Unclassified	root	N/A	29.20 %

Level 4

Name	Rank	Taxonomy	Distribution
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	0.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	60.18 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.88 %
Unclassified	root	N/A	29.20 %

Level 5

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	46.02 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.88 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.88 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.88 %
Unclassified	root	N/A	29.20 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.88 %

Level 6

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.88 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	38.05 %
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	0.88 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.88 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.88 %
Unclassified	root	N/A	29.20 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.88 %

Level 7

Name	Rank	Taxonomy	Distribution
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	0.88 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	15.93 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	1.77 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.88 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	1.77 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.88 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.88 %
Unclassified	root	N/A	29.20 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.88 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.88 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.88 %

Level 8

Name	Rank	Taxonomy	Distribution
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	12.39 %
Deltaproteobacteria bacterium SM23_61	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium SM23_61	0.88 %
Methylocaldum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylocaldum	0.88 %
Methylocella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocella	0.88 %
Methylocystis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis	0.88 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	1.77 %
Nitrobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter	0.88 %
Rhizobiales bacterium 35-68-8	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium 35-68-8	0.88 %
Rhodopseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	0.88 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.88 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.88 %
Unclassified	root	N/A	29.20 %
unclassified Methylocystaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae	0.88 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.88 %

Level 9

Name	Rank	Taxonomy	Distribution
Bradyrhizobium archetypum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium archetypum	2.65 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.88 %
Deltaproteobacteria bacterium SM23_61	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium SM23_61	0.88 %
Methylocaldum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylocaldum	0.88 %
Methylocella tundrae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocella → Methylocella tundrae	0.88 %
Methylocystaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium	0.88 %
Rhizobiales bacterium 35-68-8	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium 35-68-8	0.88 %
Rhodopseudomonas rhenobacensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas rhenobacensis	0.88 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.88 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.88 %
Unclassified	root	N/A	29.20 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.88 %
unclassified Methylocystis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → unclassified Methylocystis	0.88 %
unclassified Microvirga	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → unclassified Microvirga	0.88 %
unclassified Nitrobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → unclassified Nitrobacter	0.88 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.88 %

Level 10

Name	Rank	Taxonomy	Distribution
Bradyrhizobium archetypum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium archetypum	2.65 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.88 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	0.88 %
Deltaproteobacteria bacterium SM23_61	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium SM23_61	0.88 %
Methylocaldum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylocaldum	0.88 %
Methylocella tundrae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocella → Methylocella tundrae	0.88 %
Methylocystaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium	0.88 %
Methylocystis sp. ATCC 49242	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → unclassified Methylocystis → Methylocystis sp. ATCC 49242	0.88 %
Microvirga sp. HBU67692	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → unclassified Microvirga → Microvirga sp. HBU67692	0.88 %
Nitrobacter sp. Nb-311A	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → unclassified Nitrobacter → Nitrobacter sp. Nb-311A	0.88 %
Rhizobiales bacterium 35-68-8	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium 35-68-8	0.88 %
Rhodopseudomonas rhenobacensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas rhenobacensis	0.88 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.88 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.88 %
Unclassified	root	N/A	29.20 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.88 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300001385|JGI20193J14888_1000793	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9069
3300001385|JGI20193J14888_1002318	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4944
3300001385|JGI20193J14888_1021730	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1021
3300001394|JGI20191J14862_1000382	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	15245
3300001394|JGI20191J14862_1000413	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	14628
3300001394|JGI20191J14862_1005266	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3236
3300001397|JGI20177J14857_1011886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1507
3300001402|JGI20195J14853_1000676	All Organisms → cellular organisms → Bacteria → Proteobacteria	11422
3300004080|Ga0062385_10158893	All Organisms → cellular organisms → Bacteria	1177
3300004092|Ga0062389_102206180	All Organisms → cellular organisms → Bacteria → Proteobacteria	724

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.35%
Host-Associated	Host-Associated	2.65%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	40.71%
Plants	Host-Associated → Plants	2.65%
Terrestrial	Environmental → Terrestrial	56.64%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	37.17%
Peat	Environmental → Terrestrial → Peat	0.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.65%
Sediment	Environmental → Aquatic → Sediment	3.54%
Soil	Environmental → Terrestrial → Soil	55.75%

Type

Habitat	Taxonomy	Distribution
Loam	Environmental → Terrestrial → Soil → Loam	2.65%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.89%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	44.25%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.54%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.77%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.89%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	37.17%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.85%

Subtype

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	23.01%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.77%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.89%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	18.58%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	7.08%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.65%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.78%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	11.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.54%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.77%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.89%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.89%

Habitat

Habitat	Taxonomy	Distribution
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	18.58%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	6.19%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.77%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.77%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.89%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.65%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.89%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	15.04%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	11.50%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	23.01%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.89%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	6.19%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.89%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.89%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.65%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300001385	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 deep-092012	Environmental
3300001394	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210 deep-092012	Environmental
3300001397	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 deep-072012	Environmental
3300001402	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 deep-092012	Environmental
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental
3300005163	Soil and rhizosphere microbial communities from Laval, Canada - mgHMB	Environmental
3300005938	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-191	Environmental
3300005947	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-190	Environmental
3300005980	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil leachate replicate DNA2013-203	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI20193J14888_10007931	3300001385	Arctic Peat Soil	HTSTADRRARQKPAAMSTLQRSNRRTVAAQQFMTQ*
JGI20193J14888_10023181	3300001385	Arctic Peat Soil	NHASTADRRARQKPAAMSMLQCSNRSTVAAQQYVTQ*
JGI20193J14888_10217301	3300001385	Arctic Peat Soil	RNHASTADRRARQKPAAMSMLQCSNRSTVAAQKFVTQ*
JGI20191J14862_100038226	3300001394	Arctic Peat Soil	NHTSTADRRARQKPAAMSTLQRSNRRTVAAQQFMTQ*
JGI20191J14862_10004131	3300001394	Arctic Peat Soil	KLNRNHASTADRRARQKPAAMSMLQRSNRRTVAAQQFVTQ*
JGI20191J14862_10052665	3300001394	Arctic Peat Soil	RNHASTADRRARQKPAAMSMLQCSNRSTVAAQQYVTQ*
JGI20177J14857_10118861	3300001397	Arctic Peat Soil	ASTADRRARQKPAAMSMLQCSNRSTVAAQQYVTQ*
JGI20195J14853_10006761	3300001402	Arctic Peat Soil	KLNRNHASTADRRARQKPAAMSXLQRSNRRTVAAQQFVTQ*
Ga0062385_101588931	3300004080	Bog Forest Soil	LDRNHASTIDRRARQKPATMSVLQLCNRKTVTAHKFMTQ*
Ga0062389_1022061801	3300004092	Bog Forest Soil	TARASHPKLDRNHASTADRRSHQNPAAMSLLQCPNRGTVTAQKFMTQ*
Ga0066823_101083441	3300005163	Soil	ARASHPKLDRNHASTIDRRARQKPATMSVLQLCDRKALTAQKFMTQ*
Ga0066795_101539691	3300005938	Soil	ARASHPKLNRNHASAADRRARQKPAAMPMLQRHNRRTVAAQKYVTQ*
Ga0066795_101724892	3300005938	Soil	NSNHASTADRRARQKPAAMSMLQCSNRSTVAAQKFVTQ*
Ga0066794_101623472	3300005947	Soil	SHPKLNRNHASTADRRARQKPAAMSMLQCSNRSTVAAQQYVTQ*
Ga0066798_100182371	3300005980	Soil	HASTADRRARQKPAAMSMLQCSNRSTVAAQQFVTQ*
Ga0066798_100854841	3300005980	Soil	NHTSTADRRARQKPAAMSTLQRSNRRTVAPQQFVTQ*
Ga0066798_101915651	3300005980	Soil	LNRNHASTADRRARQKPAAMSMLQCSNRSTVAAQQYVTQ*
Ga0097691_10442141	3300006055	Arctic Peat Soil	LNRNHASTADRRARQKPAAMSMLQCSNRSTVAAQKFVTQ*
Ga0075017_1008227931	3300006059	Watersheds	DRNHASTADRRSHQNPAAMSLLQCPNRGTVTAQKFMTQ*
Ga0075014_1003280571	3300006174	Watersheds	NHASTADRRSHQNPAAMSLLQCPNRGTVTAQKFMTQ*
Ga0075527_100412544	3300006640	Arctic Peat Soil	TSTADRRARQKPAAMSMLQRSNRRTVAPQKYVTQ*
Ga0075524_102133412	3300006950	Arctic Peat Soil	NRNHASTADRRARQKPAAMSMLQCSNRSTVAAQKFVTQ*
Ga0075524_103429491	3300006950	Arctic Peat Soil	ASTADRRARQKPAAMSMLQCSNRSTVAAQKFVTQ*
Ga0066793_101671041	3300009029	Prmafrost Soil	RNHTSTADRRARQKPAAMSTLQRSNRRTVAAQQFVTQ*
Ga0116108_10078111	3300009519	Peatland	DRNHASTIDRRSRKKPAAMSLLQCSNLRTIAAQKFMTQ*
Ga0116218_15184481	3300009522	Peatlands Soil	NHASTADRRSRKNPVAMSLLQCANRRTVAAQKFMTQ*
Ga0116221_13163182	3300009523	Peatlands Soil	RNHASTADRRSRKKPAAMSLLQCSNLRTVAAQKFMTQ*
Ga0116136_10410961	3300009547	Peatland	PELDRNHASTIDRRSRKKPAAMSLLQRSNLRTVAAQKFMTQ*
Ga0116138_10334271	3300009552	Peatland	ELDRNHASTIDRRSRKKPAAMSLLQLCNRKTVTTQKFMTQ*
Ga0116119_10258251	3300009629	Peatland	HPELDRNHASTADRRSRKKPAAMSLLQLCNRKTVTAQKFMTQ*
Ga0116119_10261692	3300009629	Peatland	ASTIDRRSRKKPAAMSLLQCSNLRTIAAQKFMTQ*
Ga0116102_11130381	3300009632	Peatland	LDRNHASTADRRSRKKPAAMSLLQCSNLRTVAAQKFMTQ*
Ga0116122_10695341	3300009639	Peatland	AATARASHPELDRNHASTADRRSRKKPAAMSLLQLCNRKTVTAQKFMTQ*
Ga0116216_103484053	3300009698	Peatlands Soil	DRNHASTADRRSRKNPVAMSLLQCANRRTVAAQKLMTQ*
Ga0116216_106058731	3300009698	Peatlands Soil	HASTADRRSRKNPVAMSLLQCANRRTVAAQKFMTQ*
Ga0116217_102101051	3300009700	Peatlands Soil	LDRNHASTIDRRARQKPATMPMLQLCNRKAVTAQKFMTQ*
Ga0116134_10608351	3300009764	Peatland	LNCNHASTADRRARQKPAAMSMLQRSNHRTVATQKYVTQ*
Ga0116219_106083022	3300009824	Peatlands Soil	AATARATHPKLDRNHASTIDRRARQKPTTMPMLQLCNRKAVMAQKFMTQ*
Ga0116223_103777303	3300009839	Peatlands Soil	DRNHASTADRCSRKKPAAMSLLQLCNRKTVTAQKFMTQ*
Ga0116223_105250721	3300009839	Peatlands Soil	LDRNHASTADRRARQKPAAMSMLQRCNRKTVTAQKFMTQ*
Ga0074044_100540531	3300010343	Bog Forest Soil	KLDRNHASTIDRRARQKPTTMPMLQLCNRKAVMAQKFMTQ*
Ga0074044_106283811	3300010343	Bog Forest Soil	LDRNHASTIDRRSRKKPAAMSLLQCSNLRTIAAQKFMTQ*
Ga0136449_1001260161	3300010379	Peatlands Soil	HASTADRRSRKKPAAMSLLQCSNLRTVAAQKFMTQ*
Ga0136449_1002430981	3300010379	Peatlands Soil	RASHPELDRNHASTADRRSRKNPVAMSLLQCANRRTVAAQKLMTQ*
Ga0136449_1003796741	3300010379	Peatlands Soil	ATTRAAHPKLDRNHASTADRRARQKPAAMSMLQRCNRKTVPAQKFMTQ*
Ga0136449_1004821681	3300010379	Peatlands Soil	LDRNHASTIDRRARQKPAAMSVLQLCNCKIVTAQKFMTQ*
Ga0136449_1005084061	3300010379	Peatlands Soil	ASTADRRSRKNPVAMSLLQCANRRTVAAQKFMTQ*
Ga0136449_1008119554	3300010379	Peatlands Soil	RNHASTADRRSRKNPVAMSLLQCANRRTVAAQKFMTQ*
Ga0136449_1010608092	3300010379	Peatlands Soil	ASTADRRSRKKPAAMSLLQLCNRKTVTAQKFMTQ*
Ga0136449_1011545422	3300010379	Peatlands Soil	ASTIDRRARQKPATMPMLQLCNRKAVTAQKFMTQ*
Ga0136449_1017622541	3300010379	Peatlands Soil	DRNHASTADRRSRKKPAAMSLLQCSNLRTVAAQKFMTQ*
Ga0136449_1030092472	3300010379	Peatlands Soil	DRNHASTIDRRAGQKPAAMSMLQLCNRKATTAQKFMTQ*
Ga0181527_14316502	3300014153	Bog	ASTADRRARQKSAAMSMLQRSNHTTVATQKYVTQ*
Ga0181521_104393091	3300014158	Bog	RNHASTADRRSRKKPAAMSLLQLCNRKTVTAQKFMTQ*
Ga0181523_105332291	3300014165	Bog	NCNHASTADRRARQKPAAMSMLQRSNHRTVATQKYVTQ*
Ga0157380_129357102	3300014326	Switchgrass Rhizosphere	ASTIDRRTRQKPATMSMLQFCNRKTVTARKFMTQ*
Ga0181536_100079921	3300014638	Bog	NRNHASTADRRARQKSAAMSMLQRSNRKAAAAQKYVTQ*
Ga0181536_101296561	3300014638	Bog	LNRNHASTADRRARQKSAAMSMLQRSNRKAAAAQKYVTQ*
Ga0181536_104040341	3300014638	Bog	NCNHASTADRRARQKSAAMSMLQRSNHTTVATQKYVTQ*
Ga0181536_104266381	3300014638	Bog	ASTADRRARQKSAAMSMLQRSNRKAAAAQKYVTQ*
Ga0187818_104533601	3300017823	Freshwater Sediment	NHASTIDRRARQKPATMPMLQLCNRKAVTAQKFMTQ
Ga0187818_104665282	3300017823	Freshwater Sediment	AATARASHPKLDRNHASTIDRRARQKPATMSVLQLCNRKTVTAQKLMTQ
Ga0187856_11448941	3300017925	Peatland	AATARASHPELDRNHASTADRRSRKKPAAMSLLQLCNRKTVTTQKFMTQ
Ga0187849_12140601	3300017929	Peatland	NHASTIDRRSRKKPAAMSLLQCSNLRTIAAQKFMTQ
Ga0187854_100438172	3300017938	Peatland	DRNHASTIDRRSRKKPAAMSLLQCSNLRTIAAQKFMTQ
Ga0187854_102446721	3300017938	Peatland	LDRNHASTADRRSRKKPAAMSLLQCSNLRTVAAQKFMTQ
Ga0187850_105249902	3300017941	Peatland	SHPELDRNHASTADRRSRKKPAAMSLLQLCNRKTVTAQKFMTQ
Ga0187879_102296604	3300017946	Peatland	GSAATARASHPELDRNHASTIDRRSRKKPAAMSLLQLCNRKTVTTQKFMTQ
Ga0187816_101678501	3300017995	Freshwater Sediment	SAATARASHPKLDRNHASTIDRRARQKPATMPMLQLCNRKAVTAQKFMTQ
Ga0187891_10007921	3300017996	Peatland	RNHASTADRRARQKPAAMSMLQRSNRKAAAAQKYVTQ
Ga0187891_10041291	3300017996	Peatland	NRNHASTADRRARQKPAAMSMLQRSNRKAAAAQKYVTQ
Ga0187888_10847403	3300018008	Peatland	RNHASTADRRARQKSAAMSMLQRSNRKAAAAQKYVTQ
Ga0187888_13375321	3300018008	Peatland	PELDRYHASTIDRRSRKKPAAMSLMQRSNLRTVAAQKLMTQ
Ga0187860_10174725	3300018014	Peatland	RNHASTIDRRSRKKPAAMSLLQCSNLRTIAAQKFMTQ
Ga0187872_102468801	3300018017	Peatland	HASTADRRARQKPAAMSMLQRSNRKAAAAQKYVTQ
Ga0187885_102049791	3300018025	Peatland	ATARTSYPELNRNHASTADRRARQKPAAMSMLQRSNRKAAAAQKYVTQ
Ga0187869_103344461	3300018030	Peatland	RNHASTADRRSRKKPAAMSLLQLCNRKTVTAQKFMTQ
Ga0187862_103395871	3300018040	Peatland	LNCNHASTADRRARQKPAAMSMLQRSNHRTVATQKYVTQ
Ga0187871_102118771	3300018042	Peatland	NCNHASTADRRARQKPAAMSMLQRSNHRTVATQKYVTQ
Ga0187871_104359731	3300018042	Peatland	NHASTADRRARQKPAAMSMLQRSNHRTVATQKYVTQ
Ga0184635_103356512	3300018072	Groundwater Sediment	PKLDRNHAPTADRRARQKPAAMSMLQCSKRRTLAAHKFVTQ
Ga0210401_108838692	3300020583	Soil	LDRNHASTADRRSRKNPVAMSLLQCANRRTVAAQKFMTQ
Ga0224555_10472961	3300023088	Soil	KLNRNHASTTDRRARQKPAAMSMLQRSNRKAAAAQKYVTQ
Ga0228598_10108511	3300024227	Rhizosphere	CTASHPELDRNHASTADRRSRKNPVAMSLLQCANRRTVAAQKFMTQ
Ga0209641_103461503	3300025322	Soil	KLNRNHASTADRRARQKPAAMSMLQCSDRRTVAAQKFVTQ
Ga0208455_10135491	3300025453	Peatland	LDRNHASTIDRRSRKKPAAMSLLQCSNLRTIAAQKFMTQ
Ga0208455_10612061	3300025453	Peatland	RNHASTADRRSRKKPAAMSLLQCSNLRTVAAQKFMTQ
Ga0208850_10071301	3300025457	Arctic Peat Soil	RNHASTADRRARQKPAAMSMLQCSNRSTVAAQIFVTQ
Ga0208850_10345441	3300025457	Arctic Peat Soil	RNHASTADRRARQKPAAMSMLQCSNRSTVAAQKFVTQ
Ga0208688_10343492	3300025480	Peatland	HASTIDRRSRKKPAAMSLLQCSNLRTIAAQKFMTQ
Ga0208079_100019934	3300025481	Arctic Peat Soil	KLNRNHASTADRRARQKPAAMSMLQRSNRRTVAAQQFVTQ
Ga0208079_10009861	3300025481	Arctic Peat Soil	NHASTADRRARQKPAAMSMLQCSNRSTVAAQQYVTQ
Ga0208079_10319011	3300025481	Arctic Peat Soil	HASTADRRARQKPAAMSMLQCSNRSTVAAQQFMTQ
Ga0208715_10090621	3300025482	Arctic Peat Soil	ATARASHPKLNRNHASTADRRARQKPAAMSMLQCSNRSTVAAQQFVTQ
Ga0208587_10168394	3300025484	Arctic Peat Soil	NHTSTADRRARQKPAAMSTLQRSNRRTVAAQQFMTQ
Ga0208191_10836941	3300025496	Peatland	ATARASHPELDRNHASTADRRSRKKPAAMSLLQLCNRKTVTAQKFMTQ
Ga0208937_10132964	3300025506	Peatland	ELDRNHASTADRRSRKKPAAMSLLQCSNLRTVAAQKFMTQ
Ga0209124_102004733	3300025852	Arctic Peat Soil	LNRNHASTADRRARQKPAAMSMLQRSNRRTVAAQNYVTQ
Ga0209014_100667831	3300025857	Arctic Peat Soil	NRNHTSTADRRARQKPAAMSTLQRSNRRTVAAQQFVTQ
Ga0207681_118087492	3300025923	Switchgrass Rhizosphere	LDRDHASTIDRRTRQKPATMSMLQFCNRKTVTARKFMTQ
Ga0209913_10428452	3300026272	Soil	RNHASTADRRARQKPAAMSMLQRSNRRTVAPQKYVTQ
Ga0209622_10189831	3300027502	Forest Soil	KLDRNHASTIDRRARQKLATMSMLQLRNRKTVTAQKFMTQ
Ga0208827_11547841	3300027641	Peatlands Soil	PELDRNHASTADRRSRKKPAAMSLLQLCNRKTVTAQKFMTQ
Ga0209517_103581053	3300027854	Peatlands Soil	RTSHPELDRNHASTADRRSRKKPAAMSLLQLCNRKTVTAQKFMTQ
Ga0209380_108430991	3300027889	Soil	AATARASHPNSIATMSAIDRRARQKPTTVPMLQLCDRKAITAQKLMTQ
Ga0209067_101888542	3300027898	Watersheds	LDRNHASTIDRRARQKPATMSVLQLCNRKTVTAQKLMTQ
Ga0316363_101655053	3300030659	Peatlands Soil	GSAATARTSHPELDRNHASTADRRSRKKPAAMSLLQLCNRKTVTAQKFMTQ
Ga0310686_1038793561	3300031708	Soil	DRNHASTADRRARQKPATMSVLQLCNRKAATPQKFMTQ
Ga0311301_101645517	3300032160	Peatlands Soil	ARASHPELDRNHASTADRRSRKNPVAMSLLQCANRRTVAAQKLMTQ
Ga0311301_101948525	3300032160	Peatlands Soil	HASTADRRSRKNPVAMSLLQCANRRTVAAQKFMTQ
Ga0311301_106870152	3300032160	Peatlands Soil	HASTADRRSRKKPAAMSLLQLCNRKTVTAQKFMTQ
Ga0311301_110379842	3300032160	Peatlands Soil	DRNHASTADRRSRKNPVAMSLLQCANRRTVAAQKFMTQ
Ga0311301_114345651	3300032160	Peatlands Soil	DRNHASTADRRSRKKPAAMSLLQLCNRKTVTAQKFMTQ