Metagenome / Metatranscriptome Family F083085

Basic Information
Family ID	F083085
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	41 residues
Representative Sequence	MLLISILLGLIPLAGIAWIIVTGTITTVDGLFECLIML
Number of Associated Samples	105
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	100
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.56

Most Common Taxonomy
Group	Unclassified (100.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (26.549 % of family members)
Environment Ontology (ENVO)	Unclassified (28.319 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (56.637 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 46.97% β-sheet: 0.00% Coil/Unstructured: 53.03%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF13620	CarboxypepD_reg	83.19
PF13732	DUF4162	4.42
PF00034	Cytochrom_C	1.77
PF00005	ABC_tran	0.88

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.69%
Host-Associated	Host-Associated	5.31%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	92.04%
Plants	Host-Associated → Plants	5.31%
Aquatic	Environmental → Aquatic	2.65%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	92.04%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.42%
Freshwater	Environmental → Aquatic → Freshwater	1.77%
Sediment	Environmental → Aquatic → Sediment	0.89%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	79.65%
Loam	Environmental → Terrestrial → Soil → Loam	12.39%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.65%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.77%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.89%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.89%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	37.17%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	30.97%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.62%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	9.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.65%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.77%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.77%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	26.55%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	19.47%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	9.73%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	7.08%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.19%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.54%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.65%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.65%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.65%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.77%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.77%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	1.77%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.89%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.89%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001154	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002562	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010862	Boreal forest soil eukaryotic communities from Alaska, USA - C4-4 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300017934	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022507	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-27-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022510	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-14-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022528	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022531	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022718	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022721	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024287	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK31	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300026342	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)	Environmental	Open in IMG/M
3300026376	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-B	Environmental	Open in IMG/M
3300026515	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-A	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300026880	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300026999	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF044 (SPAdes)	Environmental	Open in IMG/M
3300027071	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027521	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027565	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027587	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3 (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12636J13339_10220291	3300001154	Forest Soil	MLLISILLGLIPLAGIAWIIVTGTITTVDGLFECLIMLSISG
JGIcombinedJ26739_1009254181	3300002245	Forest Soil	LLPVMLLISILLGLIPLAGIAWIIVTGTITTVDGLFECLIMLS
JGI25382J37095_102664932	3300002562	Grasslands Soil	LLAVMLLISILLGLIPLAGIGWIVVSGTITTVDGLFESLIMLS
JGI25616J43925_101593672	3300002917	Grasslands Soil	LLPVMLLISILLGLIPLAGIGWIVVSGTITTVDGLFESLIMLSIS
Ga0070674_1000086175	3300005356	Miscanthus Rhizosphere	MLIVSVVLGLIPLAGVIWVLVSGTLTTVDGLFTSLILLTLSG
Ga0070709_108278541	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	LSSVLLLLSIVLGIVPLAGIAWILLVGSITTVDSMFMSLILLTLS
Ga0070663_1000923893	3300005455	Corn Rhizosphere	MLVVLLSILLGIIPLLGIAWIFVSHTLTTVDGLFMSLILLALS
Ga0070695_1014739471	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	LFPVMLLISILLGLLPLAGIGWIIYTGTVTTVDGLFEILIMLSI
Ga0066692_101884701	3300005555	Soil	LLPVMLLISILLGLIPLAGIGWIVVSGTITTVDGLFESIIMLSISGVFFL
Ga0066707_109345421	3300005556	Soil	LLPVMLLISILLGLIPLAGIGWIVVSGTITTVDGLFESI
Ga0066656_108465232	3300006034	Soil	LRSVMLLISILLGLTPLAGIGWIIYTGTMTTVDGLFEILIM
Ga0075014_1006214421	3300006174	Watersheds	MLLISILLGIVPLAGIAWILRAGSITTVDGMFMSL
Ga0079222_103748631	3300006755	Agricultural Soil	MLLISIVLGLIPLGGIAWIVVSGTMTTVDGLFEIVIMLSLSGVF
Ga0066660_108319542	3300006800	Soil	LLAVMLLISIVLGLIPLAGVAWIFASDTWKTVDGLFEILIMLSLSGVFFL
Ga0075435_1006825111	3300007076	Populus Rhizosphere	MLIVSVVLGLIPLAGVVWVLVSGTITTVDGLFTSLILLTL
Ga0099793_103422441	3300007258	Vadose Zone Soil	MLLISILLGLIPLAGIAWIIVTGTITTVDGLFESL
Ga0099794_107605591	3300007265	Vadose Zone Soil	MLLISILLGLIPLAGIGWILYTGTMTTVDGLFEILIMLSIS
Ga0099829_113483911	3300009038	Vadose Zone Soil	MLLISILLGLVPLAGIAWIVVSGTITTVDGLFESLIM
Ga0099827_104840231	3300009090	Vadose Zone Soil	MLLISILLGLIPLAGIAWIIVTGTITTVDGLFECLIMLSISGIFF
Ga0126374_111811122	3300009792	Tropical Forest Soil	LLSVILLTSILLGLIPLAGIVWIFLSGTISTVDGLFGILILLSLSAIFFLNAFW
Ga0134084_101869781	3300010322	Grasslands Soil	MLLISIVLGLIPLAGIAWIVVSGTMTTVDGLFEILIMLSLSAVF
Ga0126376_128234911	3300010359	Tropical Forest Soil	MLLISILLGVLPLAGIAWIILDRAITSVDGLFMSLILLALSG
Ga0126379_104708931	3300010366	Tropical Forest Soil	LLSVILLTSILLGLIPLAGIVWIFLSGTISTVDGLFGILILLSLSGIFF
Ga0134124_118070181	3300010397	Terrestrial Soil	MLVVLLSILLGIIPLLGIAWIFVSHTLTTVDGLFMSL
Ga0134124_126532121	3300010397	Terrestrial Soil	MLVVLLTILLGIIPLLGIAWIFVSHTLTTVDGLFMSLILLALSGIF
Ga0134121_100560811	3300010401	Terrestrial Soil	MLIVSVVLGLIPLAGVVWVLVSGTITTVDGLFTSLILLTLSGILF
Ga0126348_10646822	3300010862	Boreal Forest Soil	MLLISILLGLIPLAGIAWIIVTGTITTVDGLFECL
Ga0126350_101106481	3300010880	Boreal Forest Soil	MLLLSILLALIPLAGIAWIIIARSLTSVDGLFMSLILL
Ga0150983_128405582	3300011120	Forest Soil	VLLLLSIVLGIVPLAGIAWILLVGSITTVDGMFMSLILLTVSGLFF
Ga0150983_130745972	3300011120	Forest Soil	MLLLSILLGLIPLAGIGWIIYTGTVTTVDGLFECLIMLSI
Ga0150983_153665733	3300011120	Forest Soil	MLLLSILLALIPLAGIAWIVITRSLTSVDGLFMSLILL
Ga0137392_102668261	3300011269	Vadose Zone Soil	MLLLSIVLGVVPLAGIAWILLAGSITTVDGMFMSLILL
Ga0137391_101426681	3300011270	Vadose Zone Soil	MLLLSILLALIPLAGIAWIVITKSLTSVDGLFMGLILL
Ga0137393_108265491	3300011271	Vadose Zone Soil	LVLLISILLGLIPLAGIAWIIFSGTITTVDGLFECLIML
Ga0137388_110220732	3300012189	Vadose Zone Soil	MLLISILLGLIPLAGIGWIIVSGTITTVDGLFESLIMLSISGVFF
Ga0137363_108662131	3300012202	Vadose Zone Soil	MLLISILLGLIPLAGIGWILYTGTMTTVDGLFEILIMLSISGVFFLNVF
Ga0137376_116725391	3300012208	Vadose Zone Soil	MLLISILLGLIPLAGIGWIIVTGTLTTVDGLFESLIMLSI
Ga0137377_108946892	3300012211	Vadose Zone Soil	MLLISILLGLIPLAGIAWIIVTGTITTVDGLFECLIMLSISGIFFL
Ga0137361_105546091	3300012362	Vadose Zone Soil	MLLLSLLLGLLSLAGIAWIIIVGSLLSVDGLFMSLI
Ga0137390_113787731	3300012363	Vadose Zone Soil	MLFISIVLGLIPLAGIAWIVVSGTITTVDGLFESLIMLSLSG
Ga0137395_100856213	3300012917	Vadose Zone Soil	MLLLSLLFGLLSLAGVAWIILVGSLLSVDGLFMSLILLT
Ga0137394_112917521	3300012922	Vadose Zone Soil	MLLISILLGLLPLAGIGWIIYTGTMTTVDGLFEILIMLSISGVFFL
Ga0137419_106125672	3300012925	Vadose Zone Soil	MLLISILLGLIPLAGISWIIYTGTMTTVDGLFEILIMLSISGVFF
Ga0134076_101896221	3300012976	Grasslands Soil	MLLISIVLGLIPLAGIAWIVVSGTMTTVDGLFEILIMLSL
Ga0134089_103933582	3300015358	Grasslands Soil	MLLISILLGLIPLAGIGWIVVSGTITTVDGLFESLIMLSI
Ga0182033_114774071	3300016319	Soil	MLLISIVLGTIPLAGIAWIVLRGSITTVDGLFMSL
Ga0182035_110472282	3300016341	Soil	MVLLLSILLVLIPLAGVVWVVITRSLTSVDGLFMTL
Ga0187803_100764863	3300017934	Freshwater Sediment	MLLISILLGIIPLAGIVWILAAGSITTVDGMFMSLILLTLSAIFFLNA
Ga0187817_108078022	3300017955	Freshwater Sediment	LLPVILLISIVLGLIPLAGIAWIIISGTVTTVDGLF
Ga0066655_101125991	3300018431	Grasslands Soil	MLLISIVLGLIPLAGIAWIVVSGTMTTVDGLFEVLIMLSLSGV
Ga0179592_101271411	3300020199	Vadose Zone Soil	LLPVMLLISILLGLIPLAGIAWIIVTGTITTVDGL
Ga0210407_114386782	3300020579	Soil	MLLLSILLGLIPLAGIGWIVVSGTITTVDGLFESLI
Ga0210403_109704141	3300020580	Soil	MLLLSVLLAILPLAGIAWIVVTRSLTSVDGLFMSL
Ga0210399_110209791	3300020581	Soil	LLAVMLLISILLAVIPLAGIAWIVRTRSLTSVDGLFMSLILL
Ga0210395_109122882	3300020582	Soil	LLPVILIISIVLGLIPLAGIAWIVATGTLTTTDGLFESLIMLSISGIFFLNVFW
Ga0210404_107339791	3300021088	Soil	LLTVMLLISILLGIAPLAGIVWILVAGSITTVDGMFMSLIL
Ga0210400_104637181	3300021170	Soil	MLLISILLGIIPLAGIAWILVAGSITTVDGMFMSLILLTLSGIFFLNVL
Ga0210405_104057981	3300021171	Soil	LGSVMLLLSILLALIPLAGIAWIVVTRSLTSVDGLFMS
Ga0210393_100881873	3300021401	Soil	VMLLLSILLALVPLAGIAWIVITRSLTSVDGLFMSLI
Ga0210386_109805031	3300021406	Soil	MLVLSILLALVPLAGIARIAMNGTITTVDGLFMSI
Ga0210394_118343112	3300021420	Soil	MLLISILLGLIPLAGIAWIIVTGTITTVDGLFECLIML
Ga0210384_100986451	3300021432	Soil	VMLLISILLAVIALAGIVWIVATRSLTSVDGLFMSLILLTLSGVF
Ga0210402_111222321	3300021478	Soil	MLLLSLLFGLLSLAGVAWIIIVGSLLSVDGLFMSLIL
Ga0210409_116470472	3300021559	Soil	LFPVMLLISILLGLLPLAGIGWIIYTGTMTTVDGLFEILI
Ga0222729_10172851	3300022507	Soil	LLAVMLLISILLAVIPLAGIAWIVATRSLTSVDGLFMSL
Ga0242652_10095441	3300022510	Soil	MLLISILLAVIPLAGIAWILATRSLTSVDGLFMSLI
Ga0242669_11325201	3300022528	Soil	MLLVSVLLGLIPLAGIAWIIVSGTITTLDGLFESLIM
Ga0242660_11461892	3300022531	Soil	MLLISILLGLIPLAGIGWIIVSGTITTVDGLFESIIMLSIS
Ga0242662_103481731	3300022533	Soil	LLPVMLLISILLGFIPLAGIGWIVVSGTLTTVDGLFESIIMLSIS
Ga0242675_10501491	3300022718	Soil	LLPVILIISIVLGLIPLAGIVWIVVTGTLTTTDGLFESLIMLSIS
Ga0242666_10104393	3300022721	Soil	VMLLISILLAMIPLAGIAWIVVTRSLTSVDGLFMSLILLTLSG
Ga0242654_101601731	3300022726	Soil	MLLLSILLGLIPLAGIGWIIYTGTITTVDGLFECLIMLSIS
Ga0247690_10228572	3300024287	Soil	LLPVILLLSILLALIPLAGIAWIVITRSLTSVDGLFM
Ga0207710_105725821	3300025900	Switchgrass Rhizosphere	LFVLMLLISIVFALVPLAGIVWIFVAGSITTVDGMFMSLILLTLSG
Ga0207678_106450291	3300026067	Corn Rhizosphere	MVVVLLSILLGIIPLLGIAWIFVSHTLTTVDGLFMSLILLA
Ga0207641_123291611	3300026088	Switchgrass Rhizosphere	MLVVLLSILLGIIPLLGIAWIFVSHTLTTVDGLFMSLILLALSGI
Ga0209647_12399922	3300026319	Grasslands Soil	LPAVMLLLSLVLGIIPLLGIAWIIVSGTILNVDGLFMSLI
Ga0209057_10752761	3300026342	Soil	MLLISIVLGLIPLAGIAWIVVSGTMTTVDGLFEVLIMLS
Ga0209057_11037882	3300026342	Soil	MLLISILLGLVPLAGIAWIVVSGTITTVDGLFESL
Ga0257167_10357561	3300026376	Soil	MLLISILLGLIPLAGIAWIIVTGTITTVDGLFECLIMLS
Ga0257158_10925872	3300026515	Soil	MLLISILLGLIPLAGIGWIFVTGTLTTVDGLFESLIMLSISGVFF
Ga0209577_106576831	3300026552	Soil	MLLISIVLGLIPLAGVAWIFASDTWKTVDGLFEILIMLSLSGVF
Ga0179587_103648192	3300026557	Vadose Zone Soil	MLLLSLLLGLLSLVGIAWIVIVGSLLSVDGLFMSL
Ga0179587_106675871	3300026557	Vadose Zone Soil	MLLISILLGLIPLAGIGWIVVSGTLTTVDGLFESLIMLSISG
Ga0209623_10135932	3300026880	Forest Soil	LSTVLLLLSIVLGIVPLAGIAWILLVGSITTVDGMFMSLILLTLSGLFFLNVFW
Ga0207949_10154861	3300026999	Forest Soil	MLLISILLGLIPLAGIGWIAVTGTLTTVDGLFESLIML
Ga0209214_10289223	3300027071	Forest Soil	MLLISIVLGLIPLAGIAWIVVSGTMTTVDGLFEILI
Ga0209524_10498741	3300027521	Forest Soil	LSTVLLLLSIVLGIVPLAGIAWILFVGSITTVDGMFMSLILLTLSGI
Ga0209219_10976191	3300027565	Forest Soil	LSTVLLLLSIVLGIVPLAGIAWILLVGSITTVDGMFMSLILLTL
Ga0209220_10409452	3300027587	Forest Soil	LLPVMLLISILLGLIPLAGIAWIIVTGTITTVDGLFECLIMLSIS
Ga0209588_10444443	3300027671	Vadose Zone Soil	LFPVMLLISILLGLIPLAGIAWIIVTGTITTVDGLFE
Ga0209178_11238021	3300027725	Agricultural Soil	MLLISIVLGLIPLAGIAWIFASDTWRTVDGLFEILIMLSLSAVFFLNAF
Ga0209701_106643162	3300027862	Vadose Zone Soil	MLLISILLGLIPLAGIGWIVVTGTLTTVDGLFESLIML
Ga0209275_104206822	3300027884	Soil	VMLLLSILLALVPLAGIAWIVITRSLTSVDGLFMSLILLTLS
Ga0209488_104793581	3300027903	Vadose Zone Soil	LLPVMLLISILLGLIPLAGIAWIIVTGTITTVDGLF
Ga0318574_108500132	3300031680	Soil	MLLISIALATIPLAGIAWIVLRGSITTVDGLFMSLIL
Ga0310813_120788781	3300031716	Soil	LLPVILLLSILLALIPLAGIAWIVITRSLTSVDGLF
Ga0307474_100775471	3300031718	Hardwood Forest Soil	LSTVLLLLSIVLGIVPLAGIAWILLVGSITTVDSMFMSLI
Ga0307469_108244203	3300031720	Hardwood Forest Soil	MLLISILLGLIPLAGIGWIVVSGTLTTVDGLFESLIILSIS
Ga0307469_125441092	3300031720	Hardwood Forest Soil	MLLLSILLGLLSLAGIAWIIIVGSLLSVDGLFMSL
Ga0318493_102585621	3300031723	Soil	LLAVMLLVSIVLGLIPLAGIAWVVVSGTMTTVDGLFEILIML
Ga0307477_100475043	3300031753	Hardwood Forest Soil	LLLVELLVSIILGLIPLAGIAWIFVAGSITTVDGLFMSLILLT
Ga0307477_104903441	3300031753	Hardwood Forest Soil	LSTVLLLLSIILGIVPLAGIAWILLVGSITTVDGMFMSLI
Ga0307477_110188921	3300031753	Hardwood Forest Soil	MLPVMLLVSILLGLIPLAGIAWIVVSGTLTTVDGLFECLIMLSIS
Ga0307475_109188972	3300031754	Hardwood Forest Soil	MLLLSLLLGLLSLAGIAWIIIVGSLLSVDGLFMTL
Ga0318547_110017871	3300031781	Soil	LLPVILLVSILLAIIPLAGIAWILIHGSITTVDGLFGSLI
Ga0318517_104904042	3300031835	Soil	LLPVILLVSILLAIIPLAGIAWILIHGSITTVDGLF
Ga0306923_102922331	3300031910	Soil	MLLVSIILGLIPLAGIAWIVVSGTMTTVDGLFEIL
Ga0307479_104804022	3300031962	Hardwood Forest Soil	LSIVLLLLSIVLGIVPLAGIAWILLVGSITTVDSMFMSLILLT
Ga0318531_105922932	3300031981	Soil	LLAVMLLVSIVLGLIPLAGIAWVVVSGTMTTVDGLFE
Ga0318505_102281492	3300032060	Soil	MLLISIVLGTIPLAGIAWIVLRGAITTVDGLFMSL
Ga0306920_1004704223	3300032261	Soil	LLSVVLLISILLGLIPLAGILWIFLSGAISTVDGLFGI
Ga0310810_103066283	3300033412	Soil	MLVVLLSILLGIIPLLGIVWIFVSHTLTTVDGLFMSL

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.56
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.56
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F083085

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign