 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F083084 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 113 |
| Average Sequence Length | 50 residues |
| Representative Sequence | MSETTEPVAGLEARYAALRQAARSEGGDPGDVLEAAFTELEGAIDLLR |
| Number of Associated Samples | 102 |
| Number of Associated Scaffolds | 112 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 0.00 % |
| % of genes near scaffold ends (potentially truncated) | 0.00 % |
| % of genes from short scaffolds (< 2000 bps) | 0.00 % |
| Associated GOLD sequencing projects | 97 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.62 |
| Hidden Markov Model |
|---|
| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (100.000 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (21.239 % of family members) |
| Environment Ontology (ENVO) | Unclassified (20.354 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (34.513 % of family members) |
| ⦗Top⦘ |
| ⦗Top⦘ |
| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 50.00% β-sheet: 0.00% Coil/Unstructured: 50.00% | Feature Viewer |
|
|
|||||
| Powered by Feature Viewer | |||||
| Structure Viewer | |
|---|---|
|
| |
| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.62 |
| Powered by PDBe Molstar | |
| ⦗Top⦘ |
| Pfam ID | Name | % Frequency in 112 Family Scaffolds |
|---|---|---|
| PF07228 | SpoIIE | 81.25 |
| PF01740 | STAS | 10.71 |
| PF02518 | HATPase_c | 2.68 |
| PF05532 | CsbD | 1.79 |
| PF00072 | Response_reg | 0.89 |
| PF13649 | Methyltransf_25 | 0.89 |
| COG ID | Name | Functional Category | % Frequency in 112 Family Scaffolds |
|---|---|---|---|
| COG3237 | Uncharacterized conserved protein YjbJ, UPF0337 family | Function unknown [S] | 1.79 |
| ⦗Top⦘ |
| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 100.00 % |
| Visualization |
|---|
| Powered by ApexCharts |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|
| ⦗Top⦘ |
| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 21.24% |
| Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 6.19% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 5.31% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 4.42% |
| Peatlands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil | 4.42% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 4.42% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 4.42% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 3.54% |
| Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 2.65% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 2.65% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil | 2.65% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 2.65% |
| Corn Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere | 2.65% |
| Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 2.65% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere | 2.65% |
| Bog Forest Soil | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil | 1.77% |
| Surface Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil | 1.77% |
| Agricultural Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil | 1.77% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil | 1.77% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere | 1.77% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere | 1.77% |
| Bog | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog | 0.89% |
| Soil | Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil | 0.89% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 0.89% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 0.89% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 0.89% |
| Bog Forest Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil | 0.89% |
| Soil | Environmental → Terrestrial → Soil → Loam → Grasslands → Soil | 0.89% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 0.89% |
| Agricultural Soil | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil | 0.89% |
| Exposed Rock | Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock | 0.89% |
| Soil | Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil | 0.89% |
| Avena Fatua Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere | 0.89% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere | 0.89% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere | 0.89% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere | 0.89% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 0.89% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 0.89% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 0.89% |
| Boreal Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil | 0.89% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300001356 | Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 | Environmental | Open in IMG/M |
| 3300004080 | Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3 | Environmental | Open in IMG/M |
| 3300004081 | Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2) | Environmental | Open in IMG/M |
| 3300004082 | Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3 | Environmental | Open in IMG/M |
| 3300004479 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs | Environmental | Open in IMG/M |
| 3300005337 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG | Environmental | Open in IMG/M |
| 3300005435 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG | Environmental | Open in IMG/M |
| 3300005437 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG | Environmental | Open in IMG/M |
| 3300005450 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 | Environmental | Open in IMG/M |
| 3300005526 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 | Environmental | Open in IMG/M |
| 3300005530 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG | Environmental | Open in IMG/M |
| 3300005540 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 | Environmental | Open in IMG/M |
| 3300005548 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG | Host-Associated | Open in IMG/M |
| 3300005556 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 | Environmental | Open in IMG/M |
| 3300005558 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 | Environmental | Open in IMG/M |
| 3300005616 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 | Host-Associated | Open in IMG/M |
| 3300006052 | Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013 | Environmental | Open in IMG/M |
| 3300006162 | Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 | Environmental | Open in IMG/M |
| 3300006174 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014 | Environmental | Open in IMG/M |
| 3300006237 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) | Host-Associated | Open in IMG/M |
| 3300006354 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 | Environmental | Open in IMG/M |
| 3300006854 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4 | Host-Associated | Open in IMG/M |
| 3300006914 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 | Host-Associated | Open in IMG/M |
| 3300006954 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control | Environmental | Open in IMG/M |
| 3300009090 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG | Environmental | Open in IMG/M |
| 3300009524 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG | Environmental | Open in IMG/M |
| 3300009545 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG | Host-Associated | Open in IMG/M |
| 3300009672 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG | Environmental | Open in IMG/M |
| 3300010152 | Soil microbial communities from Oklahoma, USA to study soil gas exchange rates - GP-OK-ARM metaT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300010323 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG | Environmental | Open in IMG/M |
| 3300010341 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2 | Environmental | Open in IMG/M |
| 3300010361 | Tropical forest soil microbial communities from Panama - MetaG Plot_23 | Environmental | Open in IMG/M |
| 3300010376 | Tropical forest soil microbial communities from Panama - MetaG Plot_28 | Environmental | Open in IMG/M |
| 3300010397 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4 | Environmental | Open in IMG/M |
| 3300010400 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2 | Environmental | Open in IMG/M |
| 3300010876 | Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300011003 | Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015 | Environmental | Open in IMG/M |
| 3300012189 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG | Environmental | Open in IMG/M |
| 3300012212 | Combined assembly of Hopland grassland soil | Host-Associated | Open in IMG/M |
| 3300012349 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG | Environmental | Open in IMG/M |
| 3300012476 | Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.6.yng.070610 | Host-Associated | Open in IMG/M |
| 3300012918 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG | Environmental | Open in IMG/M |
| 3300012951 | Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG | Environmental | Open in IMG/M |
| 3300012971 | Tropical forest soil microbial communities from Panama - MetaG Plot_1 | Environmental | Open in IMG/M |
| 3300012977 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG | Environmental | Open in IMG/M |
| 3300013307 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG | Host-Associated | Open in IMG/M |
| 3300014165 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG | Environmental | Open in IMG/M |
| 3300015371 | Combined assembly of cpr5 and col0 rhizosphere and soil | Host-Associated | Open in IMG/M |
| 3300015373 | Combined assembly of cpr5 rhizosphere | Host-Associated | Open in IMG/M |
| 3300016357 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 | Environmental | Open in IMG/M |
| 3300016371 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 | Environmental | Open in IMG/M |
| 3300017657 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015 | Environmental | Open in IMG/M |
| 3300021374 | Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R08 | Environmental | Open in IMG/M |
| 3300021445 | Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG | Environmental | Open in IMG/M |
| 3300021477 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O | Environmental | Open in IMG/M |
| 3300021559 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M | Environmental | Open in IMG/M |
| 3300025906 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025915 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025931 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025941 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025942 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025960 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026089 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026497 | Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-B | Environmental | Open in IMG/M |
| 3300027646 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes) | Environmental | Open in IMG/M |
| 3300027775 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes) | Environmental | Open in IMG/M |
| 3300027821 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027882 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300027898 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes) | Environmental | Open in IMG/M |
| 3300027905 | Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes) | Environmental | Open in IMG/M |
| 3300027915 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes) | Environmental | Open in IMG/M |
| 3300028146 | Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK23 | Environmental | Open in IMG/M |
| 3300031564 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21 | Environmental | Open in IMG/M |
| 3300031679 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23 | Environmental | Open in IMG/M |
| 3300031680 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22 | Environmental | Open in IMG/M |
| 3300031719 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2) | Environmental | Open in IMG/M |
| 3300031720 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515 | Environmental | Open in IMG/M |
| 3300031751 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24 | Environmental | Open in IMG/M |
| 3300031782 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20 | Environmental | Open in IMG/M |
| 3300031792 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23 | Environmental | Open in IMG/M |
| 3300031820 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515 | Environmental | Open in IMG/M |
| 3300031845 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18 | Environmental | Open in IMG/M |
| 3300031941 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080 | Environmental | Open in IMG/M |
| 3300031946 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172 | Environmental | Open in IMG/M |
| 3300031996 | Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2 | Environmental | Open in IMG/M |
| 3300032008 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18 | Environmental | Open in IMG/M |
| 3300032009 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19 | Environmental | Open in IMG/M |
| 3300032054 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23 | Environmental | Open in IMG/M |
| 3300032055 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23 | Environmental | Open in IMG/M |
| 3300032066 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18 | Environmental | Open in IMG/M |
| 3300032067 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22 | Environmental | Open in IMG/M |
| 3300032068 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21 | Environmental | Open in IMG/M |
| 3300032089 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23 | Environmental | Open in IMG/M |
| 3300032122 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4 | Environmental | Open in IMG/M |
| 3300032174 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05 | Environmental | Open in IMG/M |
| 3300032180 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515 | Environmental | Open in IMG/M |
| 3300032828 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4 | Environmental | Open in IMG/M |
| 3300032892 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5 | Environmental | Open in IMG/M |
| 3300032898 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1 | Environmental | Open in IMG/M |
| 3300032954 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2 | Environmental | Open in IMG/M |
| 3300033134 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2 | Environmental | Open in IMG/M |
| 3300033289 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108 | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
| ⦗Top⦘ |
| Protein ID | Sample Taxon ID | Habitat | Sequence |
| JGI12269J14319_102720541 | 3300001356 | Peatlands Soil | MTEAAGSDQLTELEARYAALRQAARSAGAEPGDVLDAAFTELEGAIDLLRAAGASPGEPGRR |
| Ga0062385_109921932 | 3300004080 | Bog Forest Soil | MTEAPGSDQVTELEARYVALRQAARSAGAESGDVLDAAFTELEGAIDLLRAAGASS |
| Ga0063454_1002268851 | 3300004081 | Soil | MTETPDQVAALTARYAALRRAAGSKSADPGGVLEAAFTELEGAIDLLRGD |
| Ga0062384_1008303581 | 3300004082 | Bog Forest Soil | MSETPGQVTELEARYAALRQAASSKGAAPGDVLDAAFTELEG |
| Ga0062595_1008409071 | 3300004479 | Soil | MSETPEPLAGLETRYAALRQAARSKGAEPGDVLEAVFTELEGAIDLLRAAGV |
| Ga0070682_1001147611 | 3300005337 | Corn Rhizosphere | MSEPTEPVAGLEARYAALRQAARSEGGDPGDVLEAAFTELEGA |
| Ga0070682_1010701761 | 3300005337 | Corn Rhizosphere | MSETTEPVAGLEARYAALRQAARSEGGDPGDVLEAAFTELEGA |
| Ga0070714_1010371982 | 3300005435 | Agricultural Soil | MSETTEPVAGLEARYAALRQAARSESGDPGDVLEAAFTELEGAIDLLR |
| Ga0070710_101143051 | 3300005437 | Corn, Switchgrass And Miscanthus Rhizosphere | MSETPEPLAGLETRYAALRQAARSKGAEPGDVLEATFTEL |
| Ga0066682_105237811 | 3300005450 | Soil | MSETTEPVAGLEARYAALRQAARTENGDPGDVLEAAFTELE |
| Ga0066682_109548672 | 3300005450 | Soil | MSETTEPLAGLEARYAALRQAARSEGGDPGDVLEAAFTELEGAIDLLRAAGPE |
| Ga0073909_105696852 | 3300005526 | Surface Soil | MSETTEPVAGLEARYAALRQAARSEGGDPGDVLEAAFTELEGAIDLLRAVAPVRRDD |
| Ga0070679_1005655911 | 3300005530 | Corn Rhizosphere | MSEPTEPVAGLEARYAALRQAARSEGGDPGDVLEAAFTELEGAIDLLR |
| Ga0066697_101882632 | 3300005540 | Soil | MSETTEPVAGLEARYAALRRAARSEGGGSGDVLEAAFTELEGAIDLLRGTGASQAGTSRPGSGDGAP |
| Ga0070665_1006489662 | 3300005548 | Switchgrass Rhizosphere | MSETTEPVAGLEARYAALRQAARSEGGDPGDVLEA |
| Ga0066707_101393482 | 3300005556 | Soil | MSETTEPVAGLEARYAALRQAARTENGDPGDVLEAAFTELEGAIDLLRSAA |
| Ga0066698_108396872 | 3300005558 | Soil | MSETTEPVAGLEARYAALRRAARSEGGGSGDVLEAAFTELEGAIDLL |
| Ga0068852_1001335673 | 3300005616 | Corn Rhizosphere | MSETTEPVAGLEARYAALRQAARSEGGDPGDVLEAAFT |
| Ga0075029_1005700642 | 3300006052 | Watersheds | MTEAPRSDQVTELEARYAALRQAVRSAGAESGDVLDAAFTELEGAIDLLRA |
| Ga0075030_1011541582 | 3300006162 | Watersheds | MTEAPRSDQVTELEARYAALRQAVRSAGAEPGDVLDAAFTELEGAIDLLRAA |
| Ga0075014_1006591582 | 3300006174 | Watersheds | MTEAPRSDQVTELEARYVALRQAARSAGAESGDVLDAAFTELEGAIDLLRAAGA |
| Ga0097621_1006956771 | 3300006237 | Miscanthus Rhizosphere | MTEASDQVAGLSARYAALRQAAGSTGADRGGVLEA |
| Ga0075021_108090361 | 3300006354 | Watersheds | MTEALGPDQLTELEARYAALRQAARSAAAEPGDVLDAAFTELEGAIDLLRAAG |
| Ga0075425_1008499931 | 3300006854 | Populus Rhizosphere | MTEASDQVAGLSARYAALRQAAGSSGADRGGVLEAAFTELEEAIDLLRGTESAPRH |
| Ga0075436_1003391911 | 3300006914 | Populus Rhizosphere | MTEASDQVAGLSARYAALRQAAGSTGADRGGVLEAAFTELEEAIDLLRGTESAPRD |
| Ga0075436_1003775962 | 3300006914 | Populus Rhizosphere | MSEATEPVAGLEARYAALRQAARSEGGDPGDVLEAAFTE |
| Ga0079219_123924601 | 3300006954 | Agricultural Soil | MSEAAEPVAGLEARYAALRQAARSEGGDPGDVLEAAFTELEGAIDLLR |
| Ga0099827_103423293 | 3300009090 | Vadose Zone Soil | MNTTPDQVAELNARYAALRQAARSKGTEPGDVLEAAFTELEGAIELLGSSRPQPGSPGPSQPAG |
| Ga0116225_12152583 | 3300009524 | Peatlands Soil | MRLDHDMTEAPGSDQLTELEARYAALRQAARSPGAERGDVLDAVFTELEG |
| Ga0105237_120816572 | 3300009545 | Corn Rhizosphere | MSEPTEPVAGLEARYAALRQAARSEGGDPGDVLEAAFTELEGAI |
| Ga0116215_11293501 | 3300009672 | Peatlands Soil | MTEAAGSDQLTELEARYAALRQAARSAGAEPGDVLDAAFTELEGAIDLLRAAGA |
| Ga0116215_12739181 | 3300009672 | Peatlands Soil | MTEAPGSDQFTELEARYSALRQAAGSKGVEPGDVLDAAFTELEGAIDMLRAAGASPSEPGRRP |
| Ga0126318_102737911 | 3300010152 | Soil | MSETTEPLAGLEARYAALRQAARAEGGVPGDVLEAA |
| Ga0134086_101755551 | 3300010323 | Grasslands Soil | MSETTEPVAGLEARYAALRQAARSEGGDPGDVLEAAFTELEG |
| Ga0074045_102068142 | 3300010341 | Bog Forest Soil | MTEAPGSDQLTELDARYAALRQAARSSGAEPGDVLEAAFTELEGAIDL |
| Ga0126378_118664061 | 3300010361 | Tropical Forest Soil | MSADKDMSETPEPLAGLETRYAALRQAARSKNTEPGGVLEAAFTELEGAIDLL |
| Ga0126381_1044699361 | 3300010376 | Tropical Forest Soil | MSETTEPLAGLEARYAALRQAARSEAGDPGDVLEAAFTELEGAIDLLRSA |
| Ga0134124_125242492 | 3300010397 | Terrestrial Soil | MSEPTEPVAGLEARYAALRQAARSEGGDPGDVLEAAFTELEGAIDLLRAVAPVRRDD |
| Ga0134124_128266101 | 3300010397 | Terrestrial Soil | MSEPTEPVAGLEARYAALRQAARSEGGEPGDVLEAAFTELEGAIDLLRAVAPVRRDD |
| Ga0134122_100323951 | 3300010400 | Terrestrial Soil | MSETTEPVAGLEARYAALRQAARSEGGDPGDVLEAAFTELEGAIDLL |
| Ga0126361_105477431 | 3300010876 | Boreal Forest Soil | MSEASAPDRADLQVTELEARYAALRQAARSRGAEPHDVLDAAFTELEGAIELLRAAPAG |
| Ga0138514_1001599332 | 3300011003 | Soil | MGADADMSETPEPLAGLETRYAALRQAARSEGAEPGDVLEAAFT |
| Ga0137388_116551581 | 3300012189 | Vadose Zone Soil | MNTTPDQVAELNARYAALRQAARSKGTEPGDVLEAAFTELEGAIELLGS |
| Ga0150985_1163845821 | 3300012212 | Avena Fatua Rhizosphere | MTETPDQVAALTARYAALRRAAGSKSADPGGVLEAAFTELEGAID |
| Ga0137387_112143712 | 3300012349 | Vadose Zone Soil | MNTTPDQVAELNARYAALRQAARSKGTEPGDVLEAAFTELEGAIELLGSSRPQPGSP |
| Ga0157344_10015272 | 3300012476 | Arabidopsis Rhizosphere | MSEATEPVAGLEARYAALRQAARSDGGDPGDVLEAAYANVFIV |
| Ga0137396_107854182 | 3300012918 | Vadose Zone Soil | MDMSETPEPVAGLEARYAALRQAARSEGGDPGDVLEAAFTELEEAIDLLRAVAPVRRDD |
| Ga0164300_103304282 | 3300012951 | Soil | MSEETEPVASLEARYAALRQAARSEGGDPGDVLEAAFTELEGAIDLLRAVAPVRR |
| Ga0126369_115445221 | 3300012971 | Tropical Forest Soil | MSETTGPLAGLEARYAALRQAARAENGDPGDVLEAAFTELEGAIDLLRETGAGRA |
| Ga0134087_102615762 | 3300012977 | Grasslands Soil | MSETTEPVAGLEARYAALRRAARSEGGGSGDVLEAAFTELEGAIDLLRGTGASQ |
| Ga0157372_118139572 | 3300013307 | Corn Rhizosphere | MSEATEPVAGLEARYAALRQAARSEGGDPGDVLEAAFTELEGAIDLLRAVA |
| Ga0181523_104558511 | 3300014165 | Bog | MTEAAGSDQLTELEARYAALRQAARSASAKPGDVLDATFTELEGAIDLLRAAGASSGEPGRRPP |
| Ga0132258_111525521 | 3300015371 | Arabidopsis Rhizosphere | MSETTEPVAGLEARYAALRQAARSEGGDPGDVLEAAFTELEGAIDLLRT |
| Ga0132257_1012165442 | 3300015373 | Arabidopsis Rhizosphere | MSETTEPVAGLEARYAALRQAARSEGGDPGDVLEAAFTELEGAID |
| Ga0182032_103944352 | 3300016357 | Soil | MSETTGPLAGLEARYAALRQAARSEGGQPGDVLEAAFTELEGAIDLLRGAGASRAELGGG |
| Ga0182034_107135441 | 3300016371 | Soil | MSKATEPVAGLEARYAALRQAARSDGGDPRDVLEAAFTELEG |
| Ga0134074_12427131 | 3300017657 | Grasslands Soil | MSETTEPLAGLEARYAALRQAARSDSGDPGDVLEAAFSELEGAIE |
| Ga0213881_101049051 | 3300021374 | Exposed Rock | MSENPDQVTGLAARYAALRQAARSSGAEPGDVLEAAFTELEGAIDLLRASGPAPG |
| Ga0182009_104932641 | 3300021445 | Soil | MSETTEPVAGLEARYAALRQAARSEGGDPGDVLEAAFTELEGAIDLLRAVAPVRRD |
| Ga0210398_113882621 | 3300021477 | Soil | MTEAPGSDQLTELEARYAALRQAARSKGAEPGDVLDAAFTELEGAIDLLRAAGAS |
| Ga0210409_111530182 | 3300021559 | Soil | MSETTEPVAGLEARYAALRQAARSEGGDPGDVLEAAFTELEGAIDLLRSAAPGGRDDSSG |
| Ga0207699_103271921 | 3300025906 | Corn, Switchgrass And Miscanthus Rhizosphere | MSETPEPLAGLETRYAALRQAARSKGAEPGDVLEAT |
| Ga0207693_109328582 | 3300025915 | Corn, Switchgrass And Miscanthus Rhizosphere | MSENAEPLAGLEARYAALRQAARSDGGDASDVLEAAFTELEGAID |
| Ga0207693_114119851 | 3300025915 | Corn, Switchgrass And Miscanthus Rhizosphere | MSEPTEPVAGLEARYAALRQAARSEGGDPGDVLEAAFTELEGAIDLLRA |
| Ga0207644_112245121 | 3300025931 | Switchgrass Rhizosphere | MTEASDQVAGLSARYAALRQAAGSKGADSGGMLEAAFTELEE |
| Ga0207711_117212002 | 3300025941 | Switchgrass Rhizosphere | MSEPTEPVAGLEARYAALRQAARSEGGDPGDVLEAAFTELEGAID |
| Ga0207689_117574972 | 3300025942 | Miscanthus Rhizosphere | MSETTEPVAGLEARYAALRQAARSEGGDPGDVLEAAFTELEGAIDLLRAV |
| Ga0207651_113679561 | 3300025960 | Switchgrass Rhizosphere | MSEPTEPVAGLEARYAALRQAARSEGGEPGDVLEAAFTELEGAIDLLRAVAPV |
| Ga0207648_120587022 | 3300026089 | Miscanthus Rhizosphere | MSEPTEPVAGLEARYAALRQAARSEGGEPGDVLEAAFTELEGAIDLLRAVAPVRRDDSSG |
| Ga0257164_10295761 | 3300026497 | Soil | MSGSTEPVAGLEARYAALRQAARSEGGDPGDVLEAAFTELEGAIDLLR |
| Ga0209466_10970271 | 3300027646 | Tropical Forest Soil | MSETAEPLAGLEARYAALRQAARSKAGDPGDVLEA |
| Ga0209177_101479261 | 3300027775 | Agricultural Soil | MTEASDQVAGLSARYAALRQAAGSTGADRGGVLEAAFTELEEA |
| Ga0209811_103793202 | 3300027821 | Surface Soil | MSEATEPVAGLEARYAALRQAARSEGGDPGDVLEAAFTELE |
| Ga0209590_103445552 | 3300027882 | Vadose Zone Soil | MSQTPDQVAELEARYAALQQAARSKGAEPGDVLDAAFTELEGAIDLLRAAA |
| Ga0209067_104756871 | 3300027898 | Watersheds | ADNDMTEVAGSDQLTELEARYAALRQAARSASAKPGDVLDATFTELEGAIDLLRPPGAGRWRLPAR |
| Ga0209067_104756872 | 3300027898 | Watersheds | MTEAAGSDQLTELEARYAALRQAVRSAGAEPGDVLDAAFTELEGAIDLLRAAGAGRWRLPAR |
| Ga0209415_100522561 | 3300027905 | Peatlands Soil | MRLDHDMTEAPGSDQLTELEARYAALRQAARSPAAERGDVLDAVFTELEGAIDLLRAAG |
| Ga0209069_109735681 | 3300027915 | Watersheds | MTEALGSDQVAELEARYAALRQAARSTGAEPGDVLDAAFTELEGAIDLLRAAGASPSE |
| Ga0247682_10581281 | 3300028146 | Soil | MSETTEPVAGLEARYAALRQAARSEGGDPGDVLEAAFTELEGAIDLLR |
| Ga0318573_107388471 | 3300031564 | Soil | MTEAAASDEVTALEARYAALRQAARSAGAEPGDVLEAAFTELEGAIDLLRGTGA |
| Ga0318561_100629281 | 3300031679 | Soil | MSETTGPLAGLEARYAALRQAARSEGGQPGDVLEAAFTELE |
| Ga0318574_109010291 | 3300031680 | Soil | MSETTDYVTELEARYAALRQAAKSKGAEPSDVLEAAFTE |
| Ga0306917_102245661 | 3300031719 | Soil | MSETTGPLAGLEARYAALRQAARSEGGDPGDVLEAAFTELEGAIDLL |
| Ga0307469_112661731 | 3300031720 | Hardwood Forest Soil | MSETTEPVAGLEARYAALRQAARSEGGDPGDVLEAAF |
| Ga0318494_103166802 | 3300031751 | Soil | MTEAAASDQVTALEARYAALRQAARSAGAEPGDVLEAAFTELEGAIDLLRAGEAGPGE |
| Ga0318494_107146292 | 3300031751 | Soil | MSETTGPLAGLEARYAALRQAARAEGGQPGDVLEAAFTELEGAIDLLRS |
| Ga0318552_101112691 | 3300031782 | Soil | MSETTGPLAGLEARYAALRQAARSEGGQPGDVLEAAFTELEGAIDLLRGAGASRAEQ |
| Ga0318552_101660341 | 3300031782 | Soil | MSETSEPLAGLEGRYAALRQAARAEGGDPGDVLEAAFTELEGAIDLLRSAAPGGRDEPS |
| Ga0318529_106012391 | 3300031792 | Soil | MSETAEPLAGLEARYAALRQAARSEAGDPGDVLEAAFTELEGAIDLLRSAAPGGPG |
| Ga0307473_113201972 | 3300031820 | Hardwood Forest Soil | MSETTEPLAGLEARYAALRQAARSDGGDPGDVLEAAFT |
| Ga0318511_100094939 | 3300031845 | Soil | MSETAEPLAGLEARYAALRQAARSEGGDPGDVLEAAFTELEEAIDLL |
| Ga0310912_110207811 | 3300031941 | Soil | MSETSEPLAGLEGRYAALRQAARAEGGDPGDVLEAAFTELEGAIDLLRSAAPGG |
| Ga0310910_103947502 | 3300031946 | Soil | MSETAEPLAGLEARYAALRQAARSEGGDPGDVLEAAFTDLEGAIDLRRGTGASRAEPGS |
| Ga0308176_112103621 | 3300031996 | Soil | MSETPEPVAGLEARYAALRQAARSDSGEPDDVLEAAFSELEGAIELLR |
| Ga0318562_103718691 | 3300032008 | Soil | MSETTGPLAGLEARYAALRQTARSEGGDPGDVLEAAFTE |
| Ga0318563_100836812 | 3300032009 | Soil | MSETTGPLAGLEARYAALRQAARAEGGQPGDVLEAAFTELEGAIDLLRSAAPGGRDEPSG |
| Ga0318570_100429913 | 3300032054 | Soil | MSETTGPLAGLEARYAALRQAARAEGGQAGDVLEAAFTELEGAIDLLRSAAPGGRDEPSG |
| Ga0318575_104459851 | 3300032055 | Soil | MSETSEPLAGLEGRYAALRQAARAEGGDPGDVLEAAFTELEGAIDLLR |
| Ga0318514_102598041 | 3300032066 | Soil | MSETTGPLAGLEARYAALRQTARSEGGDPGDVLEAAFTELEGAIDLLRGTGASRAE |
| Ga0318524_104402032 | 3300032067 | Soil | MSETTGPLAGLEARYAALRQAARSEGGQPGDVLEAAFTELEGAIDLL |
| Ga0318553_101442531 | 3300032068 | Soil | MSETSEPLAGLEGRYAALRQAARAEGGDPGDVLEAAFTELEG |
| Ga0318525_101403061 | 3300032089 | Soil | MSETTGPLAGLEARYAALRQAARSEGGQPGDVLEAAFTELEGAIDLLRGAGASRAELGG |
| Ga0310895_106714462 | 3300032122 | Soil | MSETTEPVAGLEARYAALRQAARSEGGDPGDVLEAAFTELEGAIDLLRAAAPVR |
| Ga0307470_113755462 | 3300032174 | Hardwood Forest Soil | MSETTEPVAGLEARYAALRQAARSEGGDPGDVLEAAFTE |
| Ga0307471_1026047091 | 3300032180 | Hardwood Forest Soil | MSETTEPVAGLEARYAALRQAARSESGDPGDVLEAAFTELEGAIDLLRAVAPVRRDDS |
| Ga0307471_1028638511 | 3300032180 | Hardwood Forest Soil | MGADADMSETPEPLAGLETRYAALRQAARSKGAEPGDVLEAAFTELEGAID |
| Ga0335080_108787081 | 3300032828 | Soil | MSETPEPLAGLETRYAALRQAARSRRAEPGDVLEAALAELEGAIDLLRAAGVPG |
| Ga0335081_118763301 | 3300032892 | Soil | MGETRDQAAGLEARYAALRQAARSRSAAPGDVLEAAFTELEGAIDLLRASGAEA |
| Ga0335072_113295311 | 3300032898 | Soil | MSENPGPVAGLEARYAALRQAARSDAGDPGDVLEAAFSELEG |
| Ga0335083_106743491 | 3300032954 | Soil | MSETTGPLAGLEARYAALRQAARSEGGDPGDVLEA |
| Ga0335083_107710202 | 3300032954 | Soil | MSETRDQAAGLEARYAALRQAATSGGAAPGDVLEAA |
| Ga0335073_116825092 | 3300033134 | Soil | MSEATEPVAGLEARYAALRQAARSEGGDPGDVLEAAFTELEGAIDLLRAV |
| Ga0310914_110473521 | 3300033289 | Soil | MSETSEPLAGLEGRYAALRQAARAEGGDPGDVLEAAFTELEGAIDLLRSAAPGGRDE |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |