 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F083083 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 113 |
| Average Sequence Length | 47 residues |
| Representative Sequence | ESALADANIDAALERAYTRLACERAGITDVAEFKKKAAGQPDMKP |
| Number of Associated Samples | 100 |
| Number of Associated Scaffolds | 113 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 5.36 % |
| % of genes near scaffold ends (potentially truncated) | 92.92 % |
| % of genes from short scaffolds (< 2000 bps) | 97.35 % |
| Associated GOLD sequencing projects | 98 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.44 |
| Hidden Markov Model |
|---|
| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (75.221 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment (10.620 % of family members) |
| Environment Ontology (ENVO) | Unclassified (26.549 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Unclassified (30.973 % of family members) |
| ⦗Top⦘ |
| ⦗Top⦘ |
| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 45.21% β-sheet: 0.00% Coil/Unstructured: 54.79% | Feature Viewer |
|
|
|||||
| Powered by Feature Viewer | |||||
| Structure Viewer | |
|---|---|
|
| |
| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.44 |
| Powered by PDBe Molstar | |
| ⦗Top⦘ |
| Pfam ID | Name | % Frequency in 113 Family Scaffolds |
|---|---|---|
| PF13683 | rve_3 | 29.20 |
| PF00665 | rve | 23.89 |
| PF16363 | GDP_Man_Dehyd | 0.88 |
| PF14236 | DUF4338 | 0.88 |
| PF00872 | Transposase_mut | 0.88 |
| COG ID | Name | Functional Category | % Frequency in 113 Family Scaffolds |
|---|---|---|---|
| COG2801 | Transposase InsO and inactivated derivatives | Mobilome: prophages, transposons [X] | 23.89 |
| COG2826 | Transposase and inactivated derivatives, IS30 family | Mobilome: prophages, transposons [X] | 23.89 |
| COG3316 | Transposase (or an inactivated derivative), DDE domain | Mobilome: prophages, transposons [X] | 23.89 |
| COG4584 | Transposase | Mobilome: prophages, transposons [X] | 23.89 |
| COG3328 | Transposase (or an inactivated derivative) | Mobilome: prophages, transposons [X] | 0.88 |
| ⦗Top⦘ |
| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 75.22 % |
| All Organisms | root | All Organisms | 24.78 % |
| Visualization |
|---|
| Powered by ApexCharts |
| ⦗Top⦘ |
| Habitat | Taxonomy | Distribution |
| Sediment | Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment | 10.62% |
| Fen | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen | 8.85% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 7.08% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 3.54% |
| Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere | 3.54% |
| Peatland | Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland | 2.65% |
| Freshwater Wetlands | Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands | 2.65% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 2.65% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 2.65% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 2.65% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 2.65% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 2.65% |
| Wetland | Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland | 1.77% |
| Freshwater | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater | 1.77% |
| Freshwater | Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater | 1.77% |
| Wetland | Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland | 1.77% |
| Sediment (Intertidal) | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) | 1.77% |
| Glacier Forefield Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil | 1.77% |
| Agricultural Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil | 1.77% |
| Arctic Peat Soil | Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil | 1.77% |
| Untreated Peat Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil | 1.77% |
| Natural And Restored Wetlands | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands | 1.77% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 1.77% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere | 1.77% |
| Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 1.77% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 1.77% |
| Bog Forest Soil | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil | 0.89% |
| Bog | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog | 0.89% |
| Peatland | Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland | 0.89% |
| Natural And Restored Wetlands | Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands | 0.89% |
| Groundwater Sediment | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment | 0.89% |
| Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 0.89% |
| Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 0.89% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 0.89% |
| Serpentine Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil | 0.89% |
| Peatlands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil | 0.89% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 0.89% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil | 0.89% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 0.89% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 0.89% |
| Fen | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen | 0.89% |
| Prmafrost Soil | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil | 0.89% |
| Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 0.89% |
| Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil | 0.89% |
| Corn Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere | 0.89% |
| Palsa | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa | 0.89% |
| Peat Soil | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil | 0.89% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere | 0.89% |
| Arabidopsis Thaliana Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere | 0.89% |
| Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere | 0.89% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 0.89% |
| Anaerobic Digestor Sludge | Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge | 0.89% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300000881 | Soil microbial communities from Great Prairies - Wisconsin Restored Prairie soil | Environmental | Open in IMG/M |
| 3300000956 | Soil microbial communities from Great Prairies - Kansas, Native Prairie soil | Environmental | Open in IMG/M |
| 3300001213 | Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly) | Environmental | Open in IMG/M |
| 3300003541 | Wetland sediment microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site B2 Bulk | Environmental | Open in IMG/M |
| 3300004009 | Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D2 | Environmental | Open in IMG/M |
| 3300004082 | Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3 | Environmental | Open in IMG/M |
| 3300004463 | Combined assembly of Arabidopsis thaliana microbial communities | Host-Associated | Open in IMG/M |
| 3300005166 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123 | Environmental | Open in IMG/M |
| 3300005337 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG | Environmental | Open in IMG/M |
| 3300005338 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 | Host-Associated | Open in IMG/M |
| 3300005439 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG | Environmental | Open in IMG/M |
| 3300005444 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG | Environmental | Open in IMG/M |
| 3300005610 | Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 | Environmental | Open in IMG/M |
| 3300005719 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 | Host-Associated | Open in IMG/M |
| 3300005825 | Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.184_BBB | Environmental | Open in IMG/M |
| 3300005827 | Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.188_CBA | Environmental | Open in IMG/M |
| 3300006174 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014 | Environmental | Open in IMG/M |
| 3300006224 | Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 4 metaG | Environmental | Open in IMG/M |
| 3300007004 | Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost | Environmental | Open in IMG/M |
| 3300009012 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159 | Environmental | Open in IMG/M |
| 3300009029 | Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189 | Environmental | Open in IMG/M |
| 3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Host-Associated | Open in IMG/M |
| 3300009131 | Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1 | Environmental | Open in IMG/M |
| 3300009167 | Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2) | Environmental | Open in IMG/M |
| 3300009545 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG | Host-Associated | Open in IMG/M |
| 3300009634 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_150 | Environmental | Open in IMG/M |
| 3300010166 | Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27 | Environmental | Open in IMG/M |
| 3300010359 | Tropical forest soil microbial communities from Panama - MetaG Plot_15 | Environmental | Open in IMG/M |
| 3300010400 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2 | Environmental | Open in IMG/M |
| 3300011119 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG | Host-Associated | Open in IMG/M |
| 3300012096 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG | Environmental | Open in IMG/M |
| 3300012923 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG | Environmental | Open in IMG/M |
| 3300012930 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300012955 | Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG | Environmental | Open in IMG/M |
| 3300013093 | Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES057 metaG | Environmental | Open in IMG/M |
| 3300014201 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG | Environmental | Open in IMG/M |
| 3300014319 | Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleA_D1 | Environmental | Open in IMG/M |
| 3300014323 | Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_CattailB_D1 | Environmental | Open in IMG/M |
| 3300014745 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG | Host-Associated | Open in IMG/M |
| 3300014839 | Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300015163 | Arctic soil microbial communities from a glacier forefield, Rabots glacier, Tarfala, Sweden (Sample Rb1b, glacier snout) | Environmental | Open in IMG/M |
| 3300015206 | Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8B, Adjacent to main proglacial river, end of transect (Watson river)) | Environmental | Open in IMG/M |
| 3300015373 | Combined assembly of cpr5 rhizosphere | Host-Associated | Open in IMG/M |
| 3300016319 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H | Environmental | Open in IMG/M |
| 3300018037 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10 | Environmental | Open in IMG/M |
| 3300018042 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10 | Environmental | Open in IMG/M |
| 3300018044 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10 | Environmental | Open in IMG/M |
| 3300018063 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2 | Environmental | Open in IMG/M |
| 3300018469 | Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T | Environmental | Open in IMG/M |
| 3300021432 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M | Environmental | Open in IMG/M |
| 3300023102 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S184-509B-5 | Environmental | Open in IMG/M |
| 3300023184 | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503 | Environmental | Open in IMG/M |
| 3300025476 | Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA14M (SPAdes) | Environmental | Open in IMG/M |
| 3300025788 | Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH01Aug08 (SPAdes) | Environmental | Open in IMG/M |
| 3300025846 | Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0004-211 (SPAdes) | Environmental | Open in IMG/M |
| 3300025858 | Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHW2_MetaG (SPAdes) | Engineered | Open in IMG/M |
| 3300025888 | Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 011-21A (SPAdes) | Environmental | Open in IMG/M |
| 3300025908 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025916 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300026118 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300027067 | Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF007 (SPAdes) | Environmental | Open in IMG/M |
| 3300027907 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300027909 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300028666 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG | Host-Associated | Open in IMG/M |
| 3300028743 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_E3_4 | Environmental | Open in IMG/M |
| 3300029985 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E1_1 | Environmental | Open in IMG/M |
| 3300029987 | I_Fen_E3 coassembly | Environmental | Open in IMG/M |
| 3300029989 | III_Fen_N1 coassembly | Environmental | Open in IMG/M |
| 3300030002 | II_Fen_N1 coassembly | Environmental | Open in IMG/M |
| 3300030294 | II_Fen_E3 coassembly | Environmental | Open in IMG/M |
| 3300030524 | II_Palsa_N3 coassembly | Environmental | Open in IMG/M |
| 3300031010 | Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE2 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031232 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3 | Environmental | Open in IMG/M |
| 3300031239 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG | Host-Associated | Open in IMG/M |
| 3300031241 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG | Host-Associated | Open in IMG/M |
| 3300031344 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG | Host-Associated | Open in IMG/M |
| 3300031548 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 | Host-Associated | Open in IMG/M |
| 3300031718 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 | Environmental | Open in IMG/M |
| 3300031720 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515 | Environmental | Open in IMG/M |
| 3300031740 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05 | Environmental | Open in IMG/M |
| 3300031873 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G15_0 | Environmental | Open in IMG/M |
| 3300031902 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2 | Environmental | Open in IMG/M |
| 3300031997 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0 | Environmental | Open in IMG/M |
| 3300032018 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_middle | Environmental | Open in IMG/M |
| 3300032143 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_0 | Environmental | Open in IMG/M |
| 3300032160 | Sb_50d combined assembly (MetaSPAdes) | Environmental | Open in IMG/M |
| 3300032164 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_0 | Environmental | Open in IMG/M |
| 3300032177 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_0 | Environmental | Open in IMG/M |
| 3300032256 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_top | Environmental | Open in IMG/M |
| 3300032275 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_bottom | Environmental | Open in IMG/M |
| 3300032397 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0 | Environmental | Open in IMG/M |
| 3300033414 | Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D4_B | Environmental | Open in IMG/M |
| 3300033418 | Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D1_A | Environmental | Open in IMG/M |
| 3300033482 | Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D1_C | Environmental | Open in IMG/M |
| 3300033487 | Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D6_A | Environmental | Open in IMG/M |
| 3300033488 | Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D1_C | Environmental | Open in IMG/M |
| 3300033521 | Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D1_B | Environmental | Open in IMG/M |
| 3300033983 | Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB23AN SIP fraction | Environmental | Open in IMG/M |
| 3300034156 | Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_01D_18 | Environmental | Open in IMG/M |
| 3300034281 | Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_03D_15 | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
| ⦗Top⦘ |
| Protein ID | Sample Taxon ID | Habitat | Sequence |
| JGI10215J12807_11754121 | 3300000881 | Soil | ALADANIDLALERAYTNMACERAGIKDVEGFKKKVAGKPRTRR* |
| JGI10215J12807_14317261 | 3300000881 | Soil | KRLESALADANIDLALERAYTNMACERAGIKDVEGFKKKVAGKPRTRR* |
| JGI10216J12902_1012419573 | 3300000956 | Soil | ADTNLELALERQFTRLACQRAGIQDVAEFKKKADGNRPTER* |
| JGIcombinedJ13530_1022708301 | 3300001213 | Wetland | LADANIDAALERAYTRMACRRAGIADVEGFKKKVAGQPGMKP* |
| JGI20214J51650_107818302 | 3300003541 | Wetland | ARVRRLESALADANIDAALERAYTRLACKRAGIADVEGFKKKAAGQPGMKP* |
| Ga0055437_101386412 | 3300004009 | Natural And Restored Wetlands | ADLNIDLALERQYVRLACERAGIGDVGEFKKKAAGQLPMGP* |
| Ga0062384_1006035162 | 3300004082 | Bog Forest Soil | LADANIDAALERAYTRLALARAGITDVAEFKKKAAGLPGIKP* |
| Ga0063356_1053823052 | 3300004463 | Arabidopsis Thaliana Rhizosphere | ERIKRLESLLADTNLELALERQYTRMACERAGIEDVVEFKKKAAGKPPTGP* |
| Ga0066674_101615111 | 3300005166 | Soil | RLRERVRRLESALADANLDLKIERAYVQIACEEAGIKDVEAFKKNGAGRLGTGL* |
| Ga0070682_1009709181 | 3300005337 | Corn Rhizosphere | LLADTNLELALERQYTRLACERAGIENIVEFKKKAAGKPPTAP* |
| Ga0068868_1010234982 | 3300005338 | Miscanthus Rhizosphere | DTNLELALERQYTRLACERAGIEDIGEFKKKAAGKPPMGP* |
| Ga0070711_1009807452 | 3300005439 | Corn, Switchgrass And Miscanthus Rhizosphere | EAALADTNIDLALERQYTRLACKRAGIEDVAGFKKKGAGQLDTER* |
| Ga0070694_1011953802 | 3300005444 | Corn, Switchgrass And Miscanthus Rhizosphere | KRRVRALERALADANIDLALERQFTRMACERAGIKDVAEFKKKVGGEPPMER* |
| Ga0070763_108175152 | 3300005610 | Soil | ESALADANIDAALERAYTRLACQRAGITDVAEFKKKAAGQPDMRP* |
| Ga0068861_1023434422 | 3300005719 | Switchgrass Rhizosphere | KERVKRLESALADANIDLALERAYTQMACERAGIKDVEGFKKKAAGKPRTRR* |
| Ga0074476_14131651 | 3300005825 | Sediment (Intertidal) | ADANIDSALERAYTRLACKRAGIADVEGFKKKAAGRPGMKP* |
| Ga0074478_16404842 | 3300005827 | Sediment (Intertidal) | DANIDAALERAYTRLACQRAGIADVAEFKKKAAGQPGMKP* |
| Ga0075014_1006671421 | 3300006174 | Watersheds | ERALADANIDLALERQFTRMACERAGIKDVAEFKKKVGGEPPTER* |
| Ga0079037_1023541001 | 3300006224 | Freshwater Wetlands | ALERALADTNIDLALERQYTRLACERAGIRDVAEFKKKAGGPPPTEP* |
| Ga0079218_111373112 | 3300007004 | Agricultural Soil | LEKALADANVDLAIERAYIEIACERAGITDVAGFKKKTAGPLGTGR* |
| Ga0079218_114979471 | 3300007004 | Agricultural Soil | KLKERVRLLERALADANVDLSIERAYTEIACERAGITDVPDFKKKTAGPLGTGR* |
| Ga0066710_1031792512 | 3300009012 | Grasslands Soil | LERALADANIELVLERQFTRIACERAGIRDVVEFKKKAAEKRPTER |
| Ga0066793_101502951 | 3300009029 | Prmafrost Soil | ESALADANIDSALERAYTRLACKRAGIADVEGFKKKAAGRPGMKP* |
| Ga0105240_104152213 | 3300009093 | Corn Rhizosphere | EGALADANIDSALERAYTRLACQRAGITDVVAFKKKAGGTPDSKP* |
| Ga0115027_110809342 | 3300009131 | Wetland | LEQALADANIDLALERQYTRLACERAGIKDVAEFKKKADGQRPMER* |
| Ga0115027_118620281 | 3300009131 | Wetland | KQRVRLLERALADVNIDLALERQYTRLACERAGIKDVAEFKKKAGGSPPMER* |
| Ga0113563_107638051 | 3300009167 | Freshwater Wetlands | ARVRQLESALADANIDAALERAYTRLACRRAGIADVEGFKKKAAGQPGMKP* |
| Ga0113563_117582842 | 3300009167 | Freshwater Wetlands | VLADTNLDLALERQFTRLACKRAGIDDVAEFKKKAAGQPPTGP* |
| Ga0105237_103215023 | 3300009545 | Corn Rhizosphere | IKRLESLLADTNLELALERQFTRLACERAGIEDMEEFKKKAAGKPPTAP* |
| Ga0116124_10199913 | 3300009634 | Peatland | LKRLRERVKRLEALLADTNLDLALERQYTCLACERAGIADVAEFKKKVAGPRPTGR* |
| Ga0126306_103352872 | 3300010166 | Serpentine Soil | ALADANLDLKIERAYVQIACEEAGIKDVEAFKKNGAGRLGTGL* |
| Ga0126376_116635621 | 3300010359 | Tropical Forest Soil | IRALEQALADKEIDLALERQFTRLACEQAGIKDLEEFKKKATGQQPTGQ* |
| Ga0134122_130619131 | 3300010400 | Terrestrial Soil | AQLKERVRRLESALADANIDLALERAYTQMACERAGIKDVEDFKKKAAGKQHIKR* |
| Ga0105246_102293942 | 3300011119 | Miscanthus Rhizosphere | NVDLAIERAYTRLACDRAGIKDVEAFKKKAGGAAGTKL* |
| Ga0105246_104401541 | 3300011119 | Miscanthus Rhizosphere | LKRLRARVRQLESALADANIDAALERSFLELACERAGLDVAEFKKKAAGQLPTKL* |
| Ga0105246_117126661 | 3300011119 | Miscanthus Rhizosphere | KERVKRLESLLADTNLELALERQYTRLACERAGIENIVEFKKKAAGKPPTAP* |
| Ga0137389_113800312 | 3300012096 | Vadose Zone Soil | KRLKARVRLLEASLADANIDAALERAYTRLACQRAGITDVAEFKKKAAGQPGMKP* |
| Ga0137359_108822682 | 3300012923 | Vadose Zone Soil | MNELKRLRARVRQLESALADANIDAALERAYTRLACQRAGITDVAEFKKKADGQPGRKP* |
| Ga0137407_111074971 | 3300012930 | Vadose Zone Soil | LEVVLADCNVELVLERAYTHIACQRAGITDIEGFKKKAAGQLPTTG* |
| Ga0164298_116008892 | 3300012955 | Soil | ADANIDLALERQYTRLACERAGIKDVVECKKKAGGQPPTER* |
| Ga0164296_10994921 | 3300013093 | Freshwater | ALERAYTEIACERAGIADVPAFKKKAGGSPGIRP* |
| Ga0181537_101451712 | 3300014201 | Bog | ESALADANIDAALERAYTRLACERAGITDVAEFKKKAAGQPDMKP* |
| Ga0075348_11905581 | 3300014319 | Natural And Restored Wetlands | RLKKRVRLLEQALADANIELALERQFTRLACERAGIKDVAAFKKKVDGPPPTGL* |
| Ga0075356_12322771 | 3300014323 | Natural And Restored Wetlands | LADANIDAALERAYTRLACRRAGIADVEGFKKKAAGQPGMKP* |
| Ga0157377_102325131 | 3300014745 | Miscanthus Rhizosphere | LERALADANIDLALERQFTRIACERAGIKDVVEFKKKVGGEPPTGQ* |
| Ga0182027_111879093 | 3300014839 | Fen | LESALADANIDAALERAYTRLACQRAGIVDVAGFKKKAAGPPGMKP* |
| Ga0167665_10861281 | 3300015163 | Glacier Forefield Soil | NQLKRLKARVRQLESALADANIDAALERAYTRLACKRAGIADVAEFKKKVAGQPGMKP* |
| Ga0167644_11496091 | 3300015206 | Glacier Forefield Soil | DANIEAALERAYTRLACEQAGIRDVAAFKKKAGGQPGMQP* |
| Ga0132257_1035924873 | 3300015373 | Arabidopsis Rhizosphere | VKDLERALAGSNVELMLEREYTAIACERAGIKDIAEFKKKAAGKRRTEG* |
| Ga0182033_114728362 | 3300016319 | Soil | LDLALERQYTRLACERAGIQDVAEFKKKAAGQPDSKP |
| Ga0187883_106733622 | 3300018037 | Peatland | NELRRLKARVRQLESALADANIDAALERAYTRLACKRAGIADVAGFKKKPLASRA |
| Ga0187871_108724341 | 3300018042 | Peatland | LKARVRQLESALGDANIDAALERAYTRLACERAGIADVAEFKKKAVGQPGMKP |
| Ga0187890_101444381 | 3300018044 | Peatland | SALADANIDAALERAYTRLACKRAGIADVEGFKKKAAGQPGMKP |
| Ga0184637_101981852 | 3300018063 | Groundwater Sediment | SALADANINLAVERAYTRMACERAGIKDVEGFKKKAAGPPPTQR |
| Ga0190270_109428582 | 3300018469 | Soil | EISLADSNIELALERQYTRLACERAGIKDVAGFKKKAGGKPPTGL |
| Ga0210384_110058812 | 3300021432 | Soil | LKRLKARVRLLEASLANAHIEAALERAYTRIACQRAGITDVAEFKKKAAGPPGMKP |
| Ga0247754_10741872 | 3300023102 | Soil | LKERIKRLELALADANIDLALERAYTNMACERAGIKDVEGFKKKVAGKPRTRR |
| Ga0214919_105636831 | 3300023184 | Freshwater | NELKRLKGRVRQLESALADANIDAALERAYTRLACQRAGITDVAEFKKKADGQPGMKP |
| Ga0208495_10339251 | 3300025476 | Freshwater | ANIDLALERQYTRLACERAGIQDVAEFKKKAGGPPPTGPSR |
| Ga0208873_10186722 | 3300025788 | Freshwater | MKQLKDRVRRLEQALGTAQVDLALERAYTEIACERAGITDVAGFKKKAAGSPGIGR |
| Ga0209538_11240522 | 3300025846 | Arctic Peat Soil | ALADANIDAALERAYTRLACQRAGIADVAEFKKKAAGQPGMRP |
| Ga0209099_12717172 | 3300025858 | Anaerobic Digestor Sludge | INELKRLRQRVRQLESALADANIDAALERAYTELACERAGVDAEEFKKKAVGQLRTRR |
| Ga0209540_102152552 | 3300025888 | Arctic Peat Soil | DAALERAYTRMACQRAGIADVEGFKKKAAGQPGMKP |
| Ga0207643_103656241 | 3300025908 | Miscanthus Rhizosphere | ARVRQLESALADANIDAALERSFLELACERAGLDVAEFKKKAAGQLPTKL |
| Ga0207663_107874531 | 3300025916 | Corn, Switchgrass And Miscanthus Rhizosphere | ERVRRLEAALADTNIDLALERQYTRLACKRAGIEDVAGFKKKGAGQLDTER |
| Ga0207675_1005264721 | 3300026118 | Switchgrass Rhizosphere | VRVRCAVPKRRVRALERALADANIDLALERQFTRMACERAGIKDVVEFKKKVGGEPPTEQ |
| Ga0208602_10314022 | 3300027067 | Forest Soil | ARVRQLESALADANIDAALERAYTRLACQRAGITDVAGFKKKAAGQPDMKP |
| Ga0207428_103991102 | 3300027907 | Populus Rhizosphere | VRQLESALADANIDAALERSFLELACERAGLDVAEFKKKAAGQLPTKL |
| Ga0209382_110364272 | 3300027909 | Populus Rhizosphere | RLETALADANVDLALERAYTRLACQRAGIKDVDDFKKKADGQSGMKP |
| Ga0265336_100560711 | 3300028666 | Rhizosphere | ARVRQLESALGDANIDAALERAYTRLACQRAGIADVAEFKKKAAGQPGMKL |
| Ga0302262_103007652 | 3300028743 | Fen | NIDAALERAYTRLACQRAGIADVAEFKKKAAGQPGMKL |
| Ga0302280_12969441 | 3300029985 | Fen | ANIASALERAYTRLACQRAGITDVAEFKKKVDGPPDIKP |
| Ga0311334_118822702 | 3300029987 | Fen | RLKDRIKRLEAVLADTNLDLALERQFTRLACKRAGIDDVAEFKKKAGGQPPTGP |
| Ga0311365_103716512 | 3300029989 | Fen | ARVRQLESALADANIDAALERAYTRLACRRAGIADVEGFKKKAAGPPGMKP |
| Ga0311365_119308011 | 3300029989 | Fen | DAALERAYTRRACQRAGIADVAEFKKKAAGQPGMKL |
| Ga0311350_109996312 | 3300030002 | Fen | EQALADANIDLALERQYTRLACQRAGIEDVEGFKKKATGKRLTGP |
| Ga0311349_117661392 | 3300030294 | Fen | ELKRLKDRIKRLEAVLADTNLDLALERQFTRLACKRAGIDDVAEFKKKAGGQPPTGP |
| Ga0311357_106761511 | 3300030524 | Palsa | ARVRQLESALADANIDAALERAYTRLACQRAGITDVAGFKKKPMASRA |
| Ga0265771_10214601 | 3300031010 | Soil | LADANIDAALERAYTRLACQRAGITDVAGFKKKAAGQPDMKP |
| Ga0302323_1031717012 | 3300031232 | Fen | AVHVDSHIELALEREYVRLACERAGIPDVGEFKKKAAGQRPMGR |
| Ga0265328_100947571 | 3300031239 | Rhizosphere | INEVRRLKARVRQLESALADANIDAALERAYTRLACKRAGIADVAGFKKKAAGQPGMKP |
| Ga0265325_103867862 | 3300031241 | Rhizosphere | KARVRQLESALADANIDAALERAYTRLACERAGIADVAEFKKKGAGRPGMKP |
| Ga0265316_102334982 | 3300031344 | Rhizosphere | RVRLLESALADANIDSALERAYTRLACKRAGITDVEGFKKKAAGQQAMKP |
| Ga0307408_1021020922 | 3300031548 | Rhizosphere | RLRERVRRLESALADASLDLKIERAYVQIACEEAGIKDVEAFKKNGAGRLGTGL |
| Ga0307474_102810551 | 3300031718 | Hardwood Forest Soil | DAALERAYTRLACQRAGITDVAEFKKKAGGQPGIKP |
| Ga0307469_122497731 | 3300031720 | Hardwood Forest Soil | KKLKERVRRLESALADANIELALEKAYTQMACERAGIKDVEGFKKKAPGA |
| Ga0307468_1011550681 | 3300031740 | Hardwood Forest Soil | TALADANVDLAIERAYTRLACDRAGIKDVEAFKKKAGGPAGMKR |
| Ga0315297_108351401 | 3300031873 | Sediment | SALADANIDAALERAYTRLACQRAGIADVAGFKKKAVGQPGMKP |
| Ga0302322_1006639202 | 3300031902 | Fen | SLADANIDAALERAYTRLACQRAGIADVAEFKKKAGGQLGMKP |
| Ga0302322_1037676182 | 3300031902 | Fen | KLESALADANIDAALERAYTRLACARAGITDVAEFKKKAVGQPDMKP |
| Ga0315278_114258741 | 3300031997 | Sediment | ANIDAALERAYTRLACQRAGIADVAGFKKKAVGQPGMKP |
| Ga0315272_105303732 | 3300032018 | Sediment | NELRRLKARVRQLESALADANIDAALERAYTRLACKRAGIADVAGFKKKAAGQPGMKP |
| Ga0315292_103904551 | 3300032143 | Sediment | AALERAYTRLACKRAGIADVAGFKKKAAGQPGMKP |
| Ga0315292_105399092 | 3300032143 | Sediment | IDAALERAYTRLACKRAGIADVEEFKKKAAGQPGMKP |
| Ga0311301_110509402 | 3300032160 | Peatlands Soil | RRVRALERALADTNIDLALERQYTRLACQRAGIDNVAEFKKKVAGQLDTER |
| Ga0315283_107128871 | 3300032164 | Sediment | VRQLESALADANIDAALERAYTRLACQRAGIADVAGFKKKAVGQPGMKP |
| Ga0315276_125699521 | 3300032177 | Sediment | PGEINELRRLKARVRQLESALADANIDAALERAYTRLACKRAGIADVAGFKKKAAGQPGMKP |
| Ga0315271_116624231 | 3300032256 | Sediment | ELRRLKARVRQLESALADANIDAALERAYTRLACKRAGIADVAGFKKKAAGQPGMKP |
| Ga0315270_106028131 | 3300032275 | Sediment | NIDAALERAYTRLACKRAGIADVEEFKKKAAGQPGMKP |
| Ga0315270_107412461 | 3300032275 | Sediment | QLESALADANIDAALERAYTRLACKRAGIADVEGFKKKAAGQSGMKP |
| Ga0315287_102377232 | 3300032397 | Sediment | VRQLESALADANIDAALERAYTRLACQRAGIADVAGFKKKAAGQPGMKP |
| Ga0315287_119228771 | 3300032397 | Sediment | RRLKARVRQLESALADANIDAALERAYTRLACKRAGIADVEGFKKKAVGQPGMKP |
| Ga0316619_107722922 | 3300033414 | Soil | ERQRLKERVQRLERALADAHVELVLERAYTQLACERAGITDVAEFKKKAAGSPHIKR |
| Ga0316625_1002416042 | 3300033418 | Soil | LLEQALADTNIDLALERQYTRLACRRAGIADVEGFKKKAAGKRPTEP |
| Ga0316625_1005261131 | 3300033418 | Soil | ESALADANIDAALERAYTRLACRRAGIADVEGFKKKAAGQPGMKP |
| Ga0316625_1015125081 | 3300033418 | Soil | QALADANIDLALERQYTRLACRRAGIEDVEGFKKKAAGKRPTEP |
| Ga0316627_1016615602 | 3300033482 | Soil | LELALADTNIDLALERQYTRLACERAGIKDVAGFKKKADGQLPGEP |
| Ga0316630_102926621 | 3300033487 | Soil | LESALADANIDSALERAYTRLACKRAGIVDVEGFKKRAVGRPGMKP |
| Ga0316621_102089073 | 3300033488 | Soil | LKHLKERVRRLESALADANIDLALERAYTQLACERAGVDPEEFKKKAAGQLRIKR |
| Ga0316616_1020847801 | 3300033521 | Soil | QRVRLLERSLADANIDLALERQFTRLACERAGIKDVAEFKKKAAGTPPMGP |
| Ga0371488_0181146_949_1077 | 3300033983 | Peat Soil | LADANLDLALERQYTRLACKRAGIEDVGEFKKKAAGTPPTEP |
| Ga0370502_0183047_3_116 | 3300034156 | Untreated Peat Soil | IDAALERAYTRLACQRAGITDVAEFKKKSGGPPGMKP |
| Ga0370481_0250520_3_155 | 3300034281 | Untreated Peat Soil | RVRLLEQALADANIDLALERQFTRLACERAGIRDVVEFKKKAGGQPPTGR |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |