NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F083054

Metagenome / Metatranscriptome Family F083054

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F083054
Family Type Metagenome / Metatranscriptome
Number of Sequences 113
Average Sequence Length 36 residues
Representative Sequence MLNPLRSEGDAFRLLLYVIAVFGTIIAIILIARAL
Number of Associated Samples 93
Number of Associated Scaffolds 113

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 32.65 %
% of genes near scaffold ends (potentially truncated) 12.39 %
% of genes from short scaffolds (< 2000 bps) 65.49 %
Associated GOLD sequencing projects 90
AlphaFold2 3D model prediction Yes
3D model pTM-score0.58

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (66.372 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(10.620 % of family members)
Environment Ontology (ENVO) Unclassified
(27.434 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(56.637 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50
1C688J18823_108933792
2Ga0070741_104575422
3Ga0070731_107048561
4Ga0070733_102909681
5Ga0070664_1012680282
6Ga0070762_104538982
7Ga0075017_1002395063
8Ga0075017_1007148911
9Ga0070712_1004162263
10Ga0075522_100780452
11Ga0075522_101009183
12Ga0075521_104066912
13Ga0079221_107934512
14Ga0079219_105505422
15Ga0116215_10709771
16Ga0116216_102920862
17Ga0116219_101916922
18Ga0126314_101651263
19Ga0126318_103574963
20Ga0074045_101897052
21Ga0134125_110926832
22Ga0134128_100504933
23Ga0136449_1004331883
24Ga0136449_1038110402
25Ga0136449_1043638151
26Ga0136623_104762341
27Ga0153952_11328671
28Ga0150985_1020806303
29Ga0150985_1083856852
30Ga0150985_1209846621
31Ga0134058_12400971
32Ga0136637_11735531
33Ga0136615_100152935
34Ga0164299_114795992
35Ga0181524_100377851
36Ga0181524_103812382
37Ga0181538_104435912
38Ga0181523_103249632
39Ga0181535_100240674
40Ga0181535_103921452
41Ga0181537_109605242
42Ga0182018_105285022
43Ga0182016_101541663
44Ga0182016_103002471
45Ga0182024_100380849
46Ga0182024_102863283
47Ga0182024_105563962
48Ga0182024_109084542
49Ga0182024_115123931
50Ga0182024_129524992
51Ga0181516_106692482
52Ga0182030_100429872
53Ga0182030_112472942
54Ga0167639_10129552
55Ga0167623_10391072
56Ga0167647_10011411
57Ga0187802_102648712
58Ga0187854_100964242
59Ga0187847_100590963
60Ga0187867_105363562
61Ga0187863_102485382
62Ga0187871_102047642
63Ga0187887_100204604
64Ga0187859_100267334
65Ga0190265_103149982
66Ga0210399_101032393
67Ga0210401_104825271
68Ga0210408_1000597910
69Ga0210396_1000061529
70Ga0210388_104045992
71Ga0210397_100247204
72Ga0210389_101335513
73Ga0210394_107890542
74Ga0210391_104251672
75Ga0210391_105369322
76Ga0210390_114952802
77Ga0208715_10113373
78Ga0208586_11015672
79Ga0208220_10693151
80Ga0209483_10725832
81Ga0207708_104545761
82Ga0209167_102871831
83Ga0209380_106567702
84Ga0209415_100380327
85Ga0209415_100981844
86Ga0209415_101229601
87Ga0209006_100485852
88Ga0209698_100950851
89Ga0209698_106157362
90Ga0209526_104071942
91Ga0302151_100205073
92Ga0302202_101069984
93Ga0265338_109018332
94Ga0311339_113713771
95Ga0302196_101078102
96Ga0311349_106332031
97Ga0311372_127651352
98Ga0307502_100135063
99Ga0302325_100231585
100Ga0272433_102947672
101Ga0307374_102334944
102Ga0310686_1029901332
103Ga0318493_106946042
104Ga0307479_107742102
105Ga0311301_102837715
106Ga0335078_106012992
107Ga0335074_104099044
108Ga0335072_105383422
109Ga0335072_110090582
110Ga0335083_101198253
111Ga0335076_114349872
112Ga0334790_003778_5925_6032
113Ga0334792_078359_268_375
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 49.21%    β-sheet: 0.00%    Coil/Unstructured: 50.79%
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5101520253035MLNPLRSEGDAFRLLLYVIAVFGTIIAIILIARALExtracel.Cytopl.Sequenceα-helicesβ-strandsCoilSS Conf. scoreTM segmentsTopol. domains
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.58
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
66.4%33.6%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Peatland
Bog
Freshwater Sediment
Soil
Polar Desert Sand
Watersheds
Soil
Terrestrial Soil
Serpentine Soil
Glacier Forefield Soil
Grasslands Soil
Surface Soil
Peatlands Soil
Agricultural Soil
Arctic Peat Soil
Soil
Hardwood Forest Soil
Soil
Bog Forest Soil
Bog
Palsa
Permafrost
Soil
Forest Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Soil
Soil
Fen
Palsa
Bog
Rock
Avena Fatua Rhizosphere
Rhizosphere
Corn Rhizosphere
Attine Ant Fungus Gardens
6.2%7.1%3.5%3.5%3.5%8.8%6.2%10.6%5.3%3.5%5.3%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
C688J18823_1089337923300001686SoilVLNPLRSEGEAFRVLLYVIVVFGAIALIALLVQSLT*
Ga0070741_1045754223300005529Surface SoilMLNPLRSEGEAFRLLIYVILVAAVVIALVLGLRAIF*
Ga0070731_1070485613300005538Surface SoilVLNPLRSEEEAFRLLLYVVGFFVVVIALVLIGRAIF*
Ga0070733_1029096813300005541Surface SoilMLNPLRSEGEAFRALLYVIAFFGTIIAIILIARALS*
Ga0070664_10126802823300005564Corn RhizosphereVINPLRSEGEAFRFLLYVVAFFAAVILIVLLVRAL*
Ga0070762_1045389823300005602SoilMRNPLRSEGDMFRLLLYVIAVFGAIIAVIVIVRALR*
Ga0075017_10023950633300006059WatershedsMRNPLRSEGDMFRLLLWVIAVFAVIIAVVVIARAL*
Ga0075017_10071489113300006059WatershedsMLNPLRSEADAFRVLLYVIAVFGTLIAIILIARAL*
Ga0070712_10041622633300006175Corn, Switchgrass And Miscanthus RhizosphereVLNPLRSEGEAFRLLLYVLGVVAIAIAAILIVRAVS*
Ga0075522_1007804523300006638Arctic Peat SoilLLNPLRSEGDAFRLLLYVIAVFGAIIAIILIARAL*
Ga0075522_1010091833300006638Arctic Peat SoilMRNPLRSEGEMFRLLLYVIAVFGTIIAIIVIVRALR*
Ga0075521_1040669123300006642Arctic Peat SoilVLNPLRSEGEAFKLLLYVLVVAAAVVALILILRAIL*
Ga0079221_1079345123300006804Agricultural SoilVFNPLRSEGEAFRLLLYVLVIAIVVIGVVLLLRAT*
Ga0079219_1055054223300006954Agricultural SoilMLNPLRSEGDAFRLLWYVVAVFAAIVIIVLLIRAFS*
Ga0116215_107097713300009672Peatlands SoilMRNPLRSEGDMFRLLLYVIAVFGTIIAIIVIVRALR*
Ga0116216_1029208623300009698Peatlands SoilMLNPLRSETDAFRLLLYVIAFFGTIILIVVIARAL*
Ga0116219_1019169223300009824Peatlands SoilMRNPLRSEGDMFRLLLYVIVVFGTIIAIIVIVRALR*
Ga0126314_1016512633300010042Serpentine SoilMLNPLDSEQAAFRFLLYAIVFFAIVIAIVLIARLI*
Ga0126318_1035749633300010152SoilMFNPLRSEGDAFRTLLYIIGFFALLIAIVLIARAL*
Ga0074045_1018970523300010341Bog Forest SoilMLNPLRSEGEAFRLLLYVGGVFLVIIVIALVLHALL*
Ga0134125_1109268323300010371Terrestrial SoilVLNPLRSEGEAFRLLVYVLVLTVVVIALVLGLRAIF*
Ga0134128_1005049333300010373Terrestrial SoilMFNPLRSEGEAFQLLLYVIAVAVVVIVLVLGLRAIF*
Ga0136449_10043318833300010379Peatlands SoilMLNPLRSEGEAFRLLLYVMVVFGTIIAVVLIARAL*
Ga0136449_10381104023300010379Peatlands SoilMLNPLRSEGEAFRLLLYVIAFFGTIIAIILIARAV*
Ga0136449_10436381513300010379Peatlands SoilMRNPLRSEGDMFRLLLYVIAVFGTIIAIILIVRALT*
Ga0136623_1047623413300012045Polar Desert SandVLNPLRSEGEAFRLLLYVLVIAVVIGAIVLIVRAL*
Ga0153952_113286713300012176Attine Ant Fungus GardensVLNPLRSEGEMFRLLIYVIAFFAVIIALVLILRAIF*
Ga0150985_10208063033300012212Avena Fatua RhizosphereMLNPLDSEQAAFRFLLYAIVFFAIVIAIVLLVRALT*
Ga0150985_10838568523300012212Avena Fatua RhizosphereVRFNPLRSEGEAFRLLLYVVAAAVLVIAVVLLARAVT*
Ga0150985_12098466213300012212Avena Fatua RhizosphereVFNPLRSEGEAFQLLLYVIVVAAVVIALVLGLRAIF*
Ga0134058_124009713300012379Grasslands SoilVLNPLRSEGEAFQLLLWVIAAAIAIVIVVEVGRAIF*
Ga0136637_117355313300012526Polar Desert SandAAVLNPLRSEGEAFRLLLYVLVIAVVIGAIVLIVRAL*
Ga0136615_1001529353300012678Polar Desert SandLNPLRSESEAFRLLLYVAVVLGVIVVIVLVARAL*
Ga0164299_1147959923300012958SoilMLNPLRSEGEAFRALLWVVGVAAVIIAIVLIARALF*
Ga0181524_1003778513300014155BogMLNPLRSEGDAFRVLLYVIAGFAVIIALIEIARAIV*
Ga0181524_1038123823300014155BogMLNPLRSEGDAFRLLLYVAGVFLTIVVLILAVRAIF*
Ga0181538_1044359123300014162BogMLNPLRSEGDAFRLLLYVAGVFLAIVVLILAVRAIF*
Ga0181523_1032496323300014165BogVLNPLRSEGEAFRLLLYVIVFFGLVIAIVVIIRAL*
Ga0181535_1002406743300014199BogMLNPLRSEGDAFRFLLYVIVVFGSIIAVILIARALS*
Ga0181535_1039214523300014199BogMLNPLRSESDAFRFLLYVIAVFGTIIAIIVIVRAI*
Ga0181537_1096052423300014201BogVINPLRSEGEAFRFLLWVIAVFGAIIAIIVIVRAL*
Ga0182018_1052850223300014489PalsaMINPLRSEGDAFRFLLYVIAVFGAIIAIIVIVRAL*
Ga0182016_1015416633300014493BogMLNPLRSEQDAFRLLIYAIVVFGVIIAVILAARAIF*
Ga0182016_1030024713300014493BogVINPLGSESEAFRFLLYVIAVFGTIIAIIVIVRAI*
Ga0182024_1003808493300014501PermafrostMRNPLRSEGDMFRLLLYVIAVFGTIIAIIVIARALR*
Ga0182024_1028632833300014501PermafrostMLNPLRSEGEAFRALLYVIAFFGTIIAIVLIARALS*
Ga0182024_1055639623300014501PermafrostMRNPLRSEGDMFRLLLYVIAVFGTIIAVIVIVRALR*
Ga0182024_1090845423300014501PermafrostMRNPLRSEGDMFRLLLYVIGVFGTIIAIIVIARALR*
Ga0182024_1151239313300014501PermafrostLNPLRSEGEAFRALLYVIAFFGTIIAIILIARALS*
Ga0182024_1295249923300014501PermafrostMRNPLRSEGDMFRLLLYVIAVFGTIIAIIIIVRALR*
Ga0181516_1066924823300014655BogVINPLRSEGEAFRFLLYVIAVFGAIIAIIVIVRAL*
Ga0182030_1004298723300014838BogMLNPLRSESDAFRLLLYVIAVFGTIIAIIVIARAL*
Ga0182030_1124729423300014838BogMLNPLRSEGEAFRLLLYVIVFFGLVIAIVLIARAL*
Ga0167639_101295523300015080Glacier Forefield SoilLNPLRSEGEAFRLLIYAIAFFAVVIALILIGRAIF*
Ga0167623_103910723300015161Glacier Forefield SoilVNPLRSEGEAFRFLLYVIGVFLVLTAIVVIARAL*
Ga0167647_100114113300015199Glacier Forefield SoilMLNPLRSEGEAFRFVIYVAVFFGVLIAVVVIARAV*
Ga0187802_1026487123300017822Freshwater SedimentVLNPLRSEGDAFRLLLYAIAVTGVIAALVIILRAIL
Ga0187854_1009642423300017938PeatlandMLNPLRSEGDAFRVLLYVIAGFAVIIALIEIARAIV
Ga0187847_1005909633300017948PeatlandMLNPLRSEGDAFRFLLYVIVVFGSIIAVILIARALS
Ga0187867_1053635623300018033PeatlandVLNPLRSEGDAFRVLLYVIAGFAVIIALIEIARALS
Ga0187863_1024853823300018034PeatlandGWSGRRVINPLRSEGDAFRFLLYVIAVFGAIIAIIVIVRAL
Ga0187871_1020476423300018042PeatlandVINPLRSEGDAFRFLLYVIAVFGAIIAIIVIVRAL
Ga0187887_1002046043300018043PeatlandMINPLRSEGDAFRFLLYVIVVFGSIIAVILIARALS
Ga0187859_1002673343300018047PeatlandVINPLRSEGEAFRFLLWVIAVFGAIIAIIVIVRAL
Ga0190265_1031499823300018422SoilVLNPLRSEGEAFRFLLYVAVTVGVITATILILRAIL
Ga0210399_1010323933300020581SoilVLNPLRSEGEMFRLLLYVIVVFAVIIAAILILRAIF
Ga0210401_1048252713300020583SoilMLNPLRSEAEMFRLLLYVIVVFGVIIAAILIARAIF
Ga0210408_10005979103300021178SoilMLNPLRSEGEMFRLLIYVVVVFAVIIAAILILRAI
Ga0210396_10000615293300021180SoilMLNPLRSEGEMFRALIYVIVFFALVIALVLIGRAIF
Ga0210388_1040459923300021181SoilVLNPLRSEGEAFRLLIYAIAFFAVVIALVLIGRAIF
Ga0210397_1002472043300021403SoilMPNPLRSEGEMFRLLLYVIVVFAVLIAAILIVRAIS
Ga0210389_1013355133300021404SoilLLNPLRSEGEAFRLLIYAIAFFAIVIALVLIGRAIF
Ga0210394_1078905423300021420SoilMLNPLRSEGEMFRLLLYVIVVFAVLIAAILIVRAIT
Ga0210391_1042516723300021433SoilVLNPLRSEGEMFRLLVYVIVAFAVIIALILVLRAIF
Ga0210391_1053693223300021433SoilMLNPLRSEGDAFRVLLYVIAGFAVIIALIEIVRALS
Ga0210390_1149528023300021474SoilVLNPLRSEGEMFRLLLYVVVAFAVIIALILIVRAIF
Ga0208715_101133733300025482Arctic Peat SoilVLNPLRSEGEAFKLLLYVLVVAAAVVALILILRAIL
Ga0208586_110156723300025588Arctic Peat SoilMRNPLRSEGDMFRLLLYVIAVFGAIIAVIVIVRALR
Ga0208220_106931513300025627Arctic Peat SoilMRNPLRSEGEMFRLLLYVIAVFGTIIAIIVIVRALR
Ga0209483_107258323300025862Arctic Peat SoilLLNPLRSEGDAFRLLLYVIAVFGAIIAIILIARAL
Ga0207708_1045457613300026075Corn, Switchgrass And Miscanthus RhizosphereVINPLRSEGEAFRFLLYVVAFFAAVILIVLLVRAL
Ga0209167_1028718313300027867Surface SoilMLNPLRGEGEAFRALLFVIAFFGTIIAIILIARALSCRFLAGSY
Ga0209380_1065677023300027889SoilMLNPLRSEGEAFRALLYVIAFFGTIIAIILIARALS
Ga0209415_1003803273300027905Peatlands SoilMLNPLRSETDAFRLLLYVIAFFGTIILIVVIARAL
Ga0209415_1009818443300027905Peatlands SoilMRNPLRSEGDMFRLLLYVIAVFGTIIAIIVIVRALR
Ga0209415_1012296013300027905Peatlands SoilMLNPLRSEGEAFRLLLYVIAFFGTIIAIILIARAV
Ga0209006_1004858523300027908Forest SoilVLNPLRSEGEAFRLLIYAIVFFAIVIALVLILRAVL
Ga0209698_1009508513300027911WatershedsMLNPLRSEGEAFRLLLYVIAFFGTIIAIVLIARAV
Ga0209698_1061573623300027911WatershedsMRNPLRSEGDMFRLLLWVIAVFAVIIAVVVIARAL
Ga0209526_1040719423300028047Forest SoilMRNPLRSEGDAFRFLLWVIAVFGTLIAIIVIVRAF
Ga0302151_1002050733300028562BogMLNPLRSESDAFRLLLYVIAVFGTIIAIIVIARAL
Ga0302202_1010699843300028762BogLMLNPLRSESDAFRLLLYVIAVFGTIIAIIVIARAL
Ga0265338_1090183323300028800RhizosphereVLNPLRSEGEAFRLLLWVIVVFGLIIAVVLIARAV
Ga0311339_1137137713300029999PalsaMLNPLRSEADAFKFLLYVIAFFGTIIAIILIARYA
Ga0302196_1010781023300030225BogMLNPLRSESDAFRLLLYVIAVFGTIIAIVLIVRAI
Ga0311349_1063320313300030294FenMLNPLRSEGDAFRLLWYVVAVFAAIVAVGLLIRAFS
Ga0311372_1276513523300030520PalsaRVINPLRSEGAAFRFLLYVLAVFGAIIAIIVIVRAL
Ga0307502_1001350633300031164SoilMLNPLRSEGEAFRFLIYVAIFFGVLTAIVLIARTL
Ga0302325_1002315853300031234PalsaMINPLRSEGDAFRFLLYVIAVFGAIIAIIVIVRAL
Ga0272433_1029476723300031450RockVLNPLRSEGEAFRLLLYVLVIAVVIGAIVLIVRAL
Ga0307374_1023349443300031670SoilMRNPLRSEGEMFRLLLYVIAVFGTIIAIIIIVRALR
Ga0310686_10299013323300031708SoilMLNPLRSEGEAFRLLLYVIVFFGLIIAIVLIARAL
Ga0318493_1069460423300031723SoilMLNPLRSEGEAFRLLLYVAAVAGVVIAVVLIVRAVS
Ga0307479_1077421023300031962Hardwood Forest SoilVLNPLRSEREAFRFLLYVVAVFGAIIAIVLIVRAF
Ga0311301_1028377153300032160Peatlands SoilMLNPLRSEGEAFRLLLYVMVVFGTIIAVVLIARAL
Ga0335078_1060129923300032805SoilVLNPLRSEGDAFRVLLYVIAGFAVIIALIEILRAIL
Ga0335074_1040990443300032895SoilVLNPLRSEGDAFKFLLYVIAVFGFVIAIVLIARYA
Ga0335072_1053834223300032898SoilVLNPIRSEAEAFKALLYVVAVFAVIIAIILIARAL
Ga0335072_1100905823300032898SoilVFNPLRSEGDAFRLLLYVIAFFGVVIAIVVIVRAV
Ga0335083_1011982533300032954SoilVLNPLRSEGEAFRLLIYVLVVAVAVIVLVLALRAIF
Ga0335076_1143498723300032955SoilAVLNPLRSEGDAFRVLLYVVAVVGVLLIIGLILRAVL
Ga0334790_003778_5925_60323300033887SoilMLNPLHSEGEAFRLLLYVIAVFGTIIAIVLIVRAL
Ga0334792_078359_268_3753300033888SoilMLNPLRSEGDAFRLLLYVIAVFGTIIAIILIARAL


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