Basic Information | |
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Family ID | F083054 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 113 |
Average Sequence Length | 36 residues |
Representative Sequence | MLNPLRSEGDAFRLLLYVIAVFGTIIAIILIARAL |
Number of Associated Samples | 93 |
Number of Associated Scaffolds | 113 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 32.65 % |
% of genes near scaffold ends (potentially truncated) | 12.39 % |
% of genes from short scaffolds (< 2000 bps) | 65.49 % |
Associated GOLD sequencing projects | 90 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.58 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (66.372 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (10.620 % of family members) |
Environment Ontology (ENVO) | Unclassified (27.434 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (56.637 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 49.21% β-sheet: 0.00% Coil/Unstructured: 50.79% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.58 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Peatland Bog Freshwater Sediment Soil Polar Desert Sand Watersheds Soil Terrestrial Soil Serpentine Soil Glacier Forefield Soil Grasslands Soil Surface Soil Peatlands Soil Agricultural Soil Arctic Peat Soil Soil Hardwood Forest Soil Soil Bog Forest Soil Bog Palsa Permafrost Soil Forest Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Soil Soil Fen Palsa Bog Rock Avena Fatua Rhizosphere Rhizosphere Corn Rhizosphere Attine Ant Fungus Gardens |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
C688J18823_108933792 | 3300001686 | Soil | VLNPLRSEGEAFRVLLYVIVVFGAIALIALLVQSLT* |
Ga0070741_104575422 | 3300005529 | Surface Soil | MLNPLRSEGEAFRLLIYVILVAAVVIALVLGLRAIF* |
Ga0070731_107048561 | 3300005538 | Surface Soil | VLNPLRSEEEAFRLLLYVVGFFVVVIALVLIGRAIF* |
Ga0070733_102909681 | 3300005541 | Surface Soil | MLNPLRSEGEAFRALLYVIAFFGTIIAIILIARALS* |
Ga0070664_1012680282 | 3300005564 | Corn Rhizosphere | VINPLRSEGEAFRFLLYVVAFFAAVILIVLLVRAL* |
Ga0070762_104538982 | 3300005602 | Soil | MRNPLRSEGDMFRLLLYVIAVFGAIIAVIVIVRALR* |
Ga0075017_1002395063 | 3300006059 | Watersheds | MRNPLRSEGDMFRLLLWVIAVFAVIIAVVVIARAL* |
Ga0075017_1007148911 | 3300006059 | Watersheds | MLNPLRSEADAFRVLLYVIAVFGTLIAIILIARAL* |
Ga0070712_1004162263 | 3300006175 | Corn, Switchgrass And Miscanthus Rhizosphere | VLNPLRSEGEAFRLLLYVLGVVAIAIAAILIVRAVS* |
Ga0075522_100780452 | 3300006638 | Arctic Peat Soil | LLNPLRSEGDAFRLLLYVIAVFGAIIAIILIARAL* |
Ga0075522_101009183 | 3300006638 | Arctic Peat Soil | MRNPLRSEGEMFRLLLYVIAVFGTIIAIIVIVRALR* |
Ga0075521_104066912 | 3300006642 | Arctic Peat Soil | VLNPLRSEGEAFKLLLYVLVVAAAVVALILILRAIL* |
Ga0079221_107934512 | 3300006804 | Agricultural Soil | VFNPLRSEGEAFRLLLYVLVIAIVVIGVVLLLRAT* |
Ga0079219_105505422 | 3300006954 | Agricultural Soil | MLNPLRSEGDAFRLLWYVVAVFAAIVIIVLLIRAFS* |
Ga0116215_10709771 | 3300009672 | Peatlands Soil | MRNPLRSEGDMFRLLLYVIAVFGTIIAIIVIVRALR* |
Ga0116216_102920862 | 3300009698 | Peatlands Soil | MLNPLRSETDAFRLLLYVIAFFGTIILIVVIARAL* |
Ga0116219_101916922 | 3300009824 | Peatlands Soil | MRNPLRSEGDMFRLLLYVIVVFGTIIAIIVIVRALR* |
Ga0126314_101651263 | 3300010042 | Serpentine Soil | MLNPLDSEQAAFRFLLYAIVFFAIVIAIVLIARLI* |
Ga0126318_103574963 | 3300010152 | Soil | MFNPLRSEGDAFRTLLYIIGFFALLIAIVLIARAL* |
Ga0074045_101897052 | 3300010341 | Bog Forest Soil | MLNPLRSEGEAFRLLLYVGGVFLVIIVIALVLHALL* |
Ga0134125_110926832 | 3300010371 | Terrestrial Soil | VLNPLRSEGEAFRLLVYVLVLTVVVIALVLGLRAIF* |
Ga0134128_100504933 | 3300010373 | Terrestrial Soil | MFNPLRSEGEAFQLLLYVIAVAVVVIVLVLGLRAIF* |
Ga0136449_1004331883 | 3300010379 | Peatlands Soil | MLNPLRSEGEAFRLLLYVMVVFGTIIAVVLIARAL* |
Ga0136449_1038110402 | 3300010379 | Peatlands Soil | MLNPLRSEGEAFRLLLYVIAFFGTIIAIILIARAV* |
Ga0136449_1043638151 | 3300010379 | Peatlands Soil | MRNPLRSEGDMFRLLLYVIAVFGTIIAIILIVRALT* |
Ga0136623_104762341 | 3300012045 | Polar Desert Sand | VLNPLRSEGEAFRLLLYVLVIAVVIGAIVLIVRAL* |
Ga0153952_11328671 | 3300012176 | Attine Ant Fungus Gardens | VLNPLRSEGEMFRLLIYVIAFFAVIIALVLILRAIF* |
Ga0150985_1020806303 | 3300012212 | Avena Fatua Rhizosphere | MLNPLDSEQAAFRFLLYAIVFFAIVIAIVLLVRALT* |
Ga0150985_1083856852 | 3300012212 | Avena Fatua Rhizosphere | VRFNPLRSEGEAFRLLLYVVAAAVLVIAVVLLARAVT* |
Ga0150985_1209846621 | 3300012212 | Avena Fatua Rhizosphere | VFNPLRSEGEAFQLLLYVIVVAAVVIALVLGLRAIF* |
Ga0134058_12400971 | 3300012379 | Grasslands Soil | VLNPLRSEGEAFQLLLWVIAAAIAIVIVVEVGRAIF* |
Ga0136637_11735531 | 3300012526 | Polar Desert Sand | AAVLNPLRSEGEAFRLLLYVLVIAVVIGAIVLIVRAL* |
Ga0136615_100152935 | 3300012678 | Polar Desert Sand | LNPLRSESEAFRLLLYVAVVLGVIVVIVLVARAL* |
Ga0164299_114795992 | 3300012958 | Soil | MLNPLRSEGEAFRALLWVVGVAAVIIAIVLIARALF* |
Ga0181524_100377851 | 3300014155 | Bog | MLNPLRSEGDAFRVLLYVIAGFAVIIALIEIARAIV* |
Ga0181524_103812382 | 3300014155 | Bog | MLNPLRSEGDAFRLLLYVAGVFLTIVVLILAVRAIF* |
Ga0181538_104435912 | 3300014162 | Bog | MLNPLRSEGDAFRLLLYVAGVFLAIVVLILAVRAIF* |
Ga0181523_103249632 | 3300014165 | Bog | VLNPLRSEGEAFRLLLYVIVFFGLVIAIVVIIRAL* |
Ga0181535_100240674 | 3300014199 | Bog | MLNPLRSEGDAFRFLLYVIVVFGSIIAVILIARALS* |
Ga0181535_103921452 | 3300014199 | Bog | MLNPLRSESDAFRFLLYVIAVFGTIIAIIVIVRAI* |
Ga0181537_109605242 | 3300014201 | Bog | VINPLRSEGEAFRFLLWVIAVFGAIIAIIVIVRAL* |
Ga0182018_105285022 | 3300014489 | Palsa | MINPLRSEGDAFRFLLYVIAVFGAIIAIIVIVRAL* |
Ga0182016_101541663 | 3300014493 | Bog | MLNPLRSEQDAFRLLIYAIVVFGVIIAVILAARAIF* |
Ga0182016_103002471 | 3300014493 | Bog | VINPLGSESEAFRFLLYVIAVFGTIIAIIVIVRAI* |
Ga0182024_100380849 | 3300014501 | Permafrost | MRNPLRSEGDMFRLLLYVIAVFGTIIAIIVIARALR* |
Ga0182024_102863283 | 3300014501 | Permafrost | MLNPLRSEGEAFRALLYVIAFFGTIIAIVLIARALS* |
Ga0182024_105563962 | 3300014501 | Permafrost | MRNPLRSEGDMFRLLLYVIAVFGTIIAVIVIVRALR* |
Ga0182024_109084542 | 3300014501 | Permafrost | MRNPLRSEGDMFRLLLYVIGVFGTIIAIIVIARALR* |
Ga0182024_115123931 | 3300014501 | Permafrost | LNPLRSEGEAFRALLYVIAFFGTIIAIILIARALS* |
Ga0182024_129524992 | 3300014501 | Permafrost | MRNPLRSEGDMFRLLLYVIAVFGTIIAIIIIVRALR* |
Ga0181516_106692482 | 3300014655 | Bog | VINPLRSEGEAFRFLLYVIAVFGAIIAIIVIVRAL* |
Ga0182030_100429872 | 3300014838 | Bog | MLNPLRSESDAFRLLLYVIAVFGTIIAIIVIARAL* |
Ga0182030_112472942 | 3300014838 | Bog | MLNPLRSEGEAFRLLLYVIVFFGLVIAIVLIARAL* |
Ga0167639_10129552 | 3300015080 | Glacier Forefield Soil | LNPLRSEGEAFRLLIYAIAFFAVVIALILIGRAIF* |
Ga0167623_10391072 | 3300015161 | Glacier Forefield Soil | VNPLRSEGEAFRFLLYVIGVFLVLTAIVVIARAL* |
Ga0167647_10011411 | 3300015199 | Glacier Forefield Soil | MLNPLRSEGEAFRFVIYVAVFFGVLIAVVVIARAV* |
Ga0187802_102648712 | 3300017822 | Freshwater Sediment | VLNPLRSEGDAFRLLLYAIAVTGVIAALVIILRAIL |
Ga0187854_100964242 | 3300017938 | Peatland | MLNPLRSEGDAFRVLLYVIAGFAVIIALIEIARAIV |
Ga0187847_100590963 | 3300017948 | Peatland | MLNPLRSEGDAFRFLLYVIVVFGSIIAVILIARALS |
Ga0187867_105363562 | 3300018033 | Peatland | VLNPLRSEGDAFRVLLYVIAGFAVIIALIEIARALS |
Ga0187863_102485382 | 3300018034 | Peatland | GWSGRRVINPLRSEGDAFRFLLYVIAVFGAIIAIIVIVRAL |
Ga0187871_102047642 | 3300018042 | Peatland | VINPLRSEGDAFRFLLYVIAVFGAIIAIIVIVRAL |
Ga0187887_100204604 | 3300018043 | Peatland | MINPLRSEGDAFRFLLYVIVVFGSIIAVILIARALS |
Ga0187859_100267334 | 3300018047 | Peatland | VINPLRSEGEAFRFLLWVIAVFGAIIAIIVIVRAL |
Ga0190265_103149982 | 3300018422 | Soil | VLNPLRSEGEAFRFLLYVAVTVGVITATILILRAIL |
Ga0210399_101032393 | 3300020581 | Soil | VLNPLRSEGEMFRLLLYVIVVFAVIIAAILILRAIF |
Ga0210401_104825271 | 3300020583 | Soil | MLNPLRSEAEMFRLLLYVIVVFGVIIAAILIARAIF |
Ga0210408_1000597910 | 3300021178 | Soil | MLNPLRSEGEMFRLLIYVVVVFAVIIAAILILRAI |
Ga0210396_1000061529 | 3300021180 | Soil | MLNPLRSEGEMFRALIYVIVFFALVIALVLIGRAIF |
Ga0210388_104045992 | 3300021181 | Soil | VLNPLRSEGEAFRLLIYAIAFFAVVIALVLIGRAIF |
Ga0210397_100247204 | 3300021403 | Soil | MPNPLRSEGEMFRLLLYVIVVFAVLIAAILIVRAIS |
Ga0210389_101335513 | 3300021404 | Soil | LLNPLRSEGEAFRLLIYAIAFFAIVIALVLIGRAIF |
Ga0210394_107890542 | 3300021420 | Soil | MLNPLRSEGEMFRLLLYVIVVFAVLIAAILIVRAIT |
Ga0210391_104251672 | 3300021433 | Soil | VLNPLRSEGEMFRLLVYVIVAFAVIIALILVLRAIF |
Ga0210391_105369322 | 3300021433 | Soil | MLNPLRSEGDAFRVLLYVIAGFAVIIALIEIVRALS |
Ga0210390_114952802 | 3300021474 | Soil | VLNPLRSEGEMFRLLLYVVVAFAVIIALILIVRAIF |
Ga0208715_10113373 | 3300025482 | Arctic Peat Soil | VLNPLRSEGEAFKLLLYVLVVAAAVVALILILRAIL |
Ga0208586_11015672 | 3300025588 | Arctic Peat Soil | MRNPLRSEGDMFRLLLYVIAVFGAIIAVIVIVRALR |
Ga0208220_10693151 | 3300025627 | Arctic Peat Soil | MRNPLRSEGEMFRLLLYVIAVFGTIIAIIVIVRALR |
Ga0209483_10725832 | 3300025862 | Arctic Peat Soil | LLNPLRSEGDAFRLLLYVIAVFGAIIAIILIARAL |
Ga0207708_104545761 | 3300026075 | Corn, Switchgrass And Miscanthus Rhizosphere | VINPLRSEGEAFRFLLYVVAFFAAVILIVLLVRAL |
Ga0209167_102871831 | 3300027867 | Surface Soil | MLNPLRGEGEAFRALLFVIAFFGTIIAIILIARALSCRFLAGSY |
Ga0209380_106567702 | 3300027889 | Soil | MLNPLRSEGEAFRALLYVIAFFGTIIAIILIARALS |
Ga0209415_100380327 | 3300027905 | Peatlands Soil | MLNPLRSETDAFRLLLYVIAFFGTIILIVVIARAL |
Ga0209415_100981844 | 3300027905 | Peatlands Soil | MRNPLRSEGDMFRLLLYVIAVFGTIIAIIVIVRALR |
Ga0209415_101229601 | 3300027905 | Peatlands Soil | MLNPLRSEGEAFRLLLYVIAFFGTIIAIILIARAV |
Ga0209006_100485852 | 3300027908 | Forest Soil | VLNPLRSEGEAFRLLIYAIVFFAIVIALVLILRAVL |
Ga0209698_100950851 | 3300027911 | Watersheds | MLNPLRSEGEAFRLLLYVIAFFGTIIAIVLIARAV |
Ga0209698_106157362 | 3300027911 | Watersheds | MRNPLRSEGDMFRLLLWVIAVFAVIIAVVVIARAL |
Ga0209526_104071942 | 3300028047 | Forest Soil | MRNPLRSEGDAFRFLLWVIAVFGTLIAIIVIVRAF |
Ga0302151_100205073 | 3300028562 | Bog | MLNPLRSESDAFRLLLYVIAVFGTIIAIIVIARAL |
Ga0302202_101069984 | 3300028762 | Bog | LMLNPLRSESDAFRLLLYVIAVFGTIIAIIVIARAL |
Ga0265338_109018332 | 3300028800 | Rhizosphere | VLNPLRSEGEAFRLLLWVIVVFGLIIAVVLIARAV |
Ga0311339_113713771 | 3300029999 | Palsa | MLNPLRSEADAFKFLLYVIAFFGTIIAIILIARYA |
Ga0302196_101078102 | 3300030225 | Bog | MLNPLRSESDAFRLLLYVIAVFGTIIAIVLIVRAI |
Ga0311349_106332031 | 3300030294 | Fen | MLNPLRSEGDAFRLLWYVVAVFAAIVAVGLLIRAFS |
Ga0311372_127651352 | 3300030520 | Palsa | RVINPLRSEGAAFRFLLYVLAVFGAIIAIIVIVRAL |
Ga0307502_100135063 | 3300031164 | Soil | MLNPLRSEGEAFRFLIYVAIFFGVLTAIVLIARTL |
Ga0302325_100231585 | 3300031234 | Palsa | MINPLRSEGDAFRFLLYVIAVFGAIIAIIVIVRAL |
Ga0272433_102947672 | 3300031450 | Rock | VLNPLRSEGEAFRLLLYVLVIAVVIGAIVLIVRAL |
Ga0307374_102334944 | 3300031670 | Soil | MRNPLRSEGEMFRLLLYVIAVFGTIIAIIIIVRALR |
Ga0310686_1029901332 | 3300031708 | Soil | MLNPLRSEGEAFRLLLYVIVFFGLIIAIVLIARAL |
Ga0318493_106946042 | 3300031723 | Soil | MLNPLRSEGEAFRLLLYVAAVAGVVIAVVLIVRAVS |
Ga0307479_107742102 | 3300031962 | Hardwood Forest Soil | VLNPLRSEREAFRFLLYVVAVFGAIIAIVLIVRAF |
Ga0311301_102837715 | 3300032160 | Peatlands Soil | MLNPLRSEGEAFRLLLYVMVVFGTIIAVVLIARAL |
Ga0335078_106012992 | 3300032805 | Soil | VLNPLRSEGDAFRVLLYVIAGFAVIIALIEILRAIL |
Ga0335074_104099044 | 3300032895 | Soil | VLNPLRSEGDAFKFLLYVIAVFGFVIAIVLIARYA |
Ga0335072_105383422 | 3300032898 | Soil | VLNPIRSEAEAFKALLYVVAVFAVIIAIILIARAL |
Ga0335072_110090582 | 3300032898 | Soil | VFNPLRSEGDAFRLLLYVIAFFGVVIAIVVIVRAV |
Ga0335083_101198253 | 3300032954 | Soil | VLNPLRSEGEAFRLLIYVLVVAVAVIVLVLALRAIF |
Ga0335076_114349872 | 3300032955 | Soil | AVLNPLRSEGDAFRVLLYVVAVVGVLLIIGLILRAVL |
Ga0334790_003778_5925_6032 | 3300033887 | Soil | MLNPLHSEGEAFRLLLYVIAVFGTIIAIVLIVRAL |
Ga0334792_078359_268_375 | 3300033888 | Soil | MLNPLRSEGDAFRLLLYVIAVFGTIIAIILIARAL |
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