Metagenome / Metatranscriptome Family F083036

Overview

Basic Information

• Family ID: F083036
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 113
• Average Sequence Length: 47 residues
• Representative Sequence: LPFDWGSKVESALRIFGADRALLLIEGVAIAKVVMLGIAYPFRRRR
• Number of Associated Samples: 94
• Number of Associated Scaffolds: 113

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 16.67 %
• % of genes near scaffold ends (potentially truncated): 4.42 %
• % of genes from short scaffolds (< 2000 bps): 5.31 %
• Associated GOLD sequencing projects: 87
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (97.345 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (18.584 % of family members)
• Environment Ontology (ENVO): Unclassified (27.434 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (53.982 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Transmembrane (alpha-helical)
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 54.05%
  β-sheet: 0.00%
  Coil/Unstructured: 45.95%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF00155	Aminotran_1_2	1.77
PF00296	Bac_luciferase	1.77
PF13358	DDE_3	1.77
PF05532	CsbD	1.77
PF00872	Transposase_mut	0.88
PF14863	Alkyl_sulf_dimr	0.88
PF00595	PDZ	0.88
PF03372	Exo_endo_phos	0.88
PF00313	CSD	0.88
PF00239	Resolvase	0.88
PF01594	AI-2E_transport	0.88
PF09650	PHA_gran_rgn	0.88
PF11901	DUF3421	0.88
PF13751	DDE_Tnp_1_6	0.88
PF00753	Lactamase_B	0.88
PF07993	NAD_binding_4	0.88
PF03171	2OG-FeII_Oxy	0.88
PF08840	BAAT_C	0.88
PF01244	Peptidase_M19	0.88
PF13538	UvrD_C_2	0.88
PF01527	HTH_Tnp_1	0.88
PF01476	LysM	0.88
PF01425	Amidase	0.88
PF01751	Toprim	0.88
PF01979	Amidohydro_1	0.88
PF04075	F420H2_quin_red	0.88
PF00903	Glyoxalase	0.88
PF07681	DoxX	0.88
PF08837	DUF1810	0.88
PF00535	Glycos_transf_2	0.88
PF05406	WGR	0.88
PF13565	HTH_32	0.88
PF13701	DDE_Tnp_1_4	0.88
PF01694	Rhomboid	0.88
PF09929	DUF2161	0.88
PF08309	LVIVD	0.88
PF13280	WYL	0.88
PF13518	HTH_28	0.88
PF00848	Ring_hydroxyl_A	0.88
PF02586	SRAP	0.88
PF01717	Meth_synt_2	0.88
PF11249	DUF3047	0.88

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG4638	Phenylpropionate dioxygenase or related ring-hydroxylating dioxygenase, large terminal subunit	Inorganic ion transport and metabolism [P]	1.77
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	1.77
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	1.77
COG2355	Zn-dependent dipeptidase, microsomal dipeptidase homolog	Posttranslational modification, protein turnover, chaperones [O]	0.88
COG5579	Uncharacterized conserved protein, DUF1810 family	Function unknown [S]	0.88
COG5276	Uncharacterized secreted protein, contains LVIVD repeats, choice-of-anchor domain	Function unknown [S]	0.88
COG4270	Uncharacterized membrane protein	Function unknown [S]	0.88
COG3831	WGR domain, predicted DNA-binding domain in MolR	Transcription [K]	0.88
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.88
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.88
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.88
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	0.88
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	0.88
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.88
COG0705	Membrane-associated serine protease, rhomboid family	Posttranslational modification, protein turnover, chaperones [O]	0.88
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	0.88
COG0620	Methionine synthase II (cobalamin-independent)	Amino acid transport and metabolism [E]	0.88

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.35 %
All Organisms	root	All Organisms	2.65 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.35 %
cellular organisms	root	All Organisms → cellular organisms	2.65 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.35 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.65 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.35 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.65 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.35 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.65 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.35 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.77 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.35 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.77 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300005167|Ga0066672_10094605	Not Available	1812
3300009143|Ga0099792_10189641	Not Available	1162
3300012203|Ga0137399_10580370	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	942
3300020580|Ga0210403_10780858	Not Available	760
3300025916|Ga0207663_10609977	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	858
3300025941|Ga0207711_11891936	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	540

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	86.73%
Host-Associated	Host-Associated	13.27%

Class

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	85.84%
Plants	Host-Associated → Plants	13.27%
Aquatic	Environmental → Aquatic	0.89%

Category

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	85.84%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.96%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.31%
Freshwater	Environmental → Aquatic → Freshwater	0.89%

Type

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	69.91%
Loam	Environmental → Terrestrial → Soil → Loam	15.93%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.31%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.65%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.89%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.86%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	25.66%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	10.62%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.08%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.65%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.89%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.89%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.89%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.89%

Habitat

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.58%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	14.16%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	12.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.19%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.19%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.54%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.54%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.77%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.77%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.77%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.77%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.77%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.77%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.89%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.89%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.89%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.89%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental
3300010113	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_5_24_2 metaT (Metagenome Metatranscriptome)	Environmental
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental
3300010863	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)	Environmental
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental
3300015372	Soil combined assembly	Host-Associated
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental
3300022529	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O (Metagenome Metatranscriptome) (v2)	Environmental
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated
3300027706	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)	Environmental
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ51221_101402132	3300003505	Forest Soil	LPFNWGSKAESALRLFGADRALLLIEGVAIAKVAMLGIAYFFRRRRQPML*
Ga0058899_101158021	3300004631	Forest Soil	TQLLLPDWASKAESALRIFGADRALLLVEGIAMAKLIMLAIAYPFRRGR*
Ga0066672_100946053	3300005167	Soil	LTTVADENLLLIKTVTRSLPFDWGSKIESALRIFGADRALLLIESIALAKLIMLGIAYPFRRRR*
Ga0066677_104358822	3300005171	Soil	PPDWASKTESALRMFGADRALLLVEGVAVAKLIMLGIAQPFRRRRP*
Ga0066683_103030511	3300005172	Soil	LPLDWSSNVESAVRIFGADRALLLIEGVALAKFIMLAVAHPSAAARNR
Ga0066684_106245931	3300005179	Soil	KVESALRIFGADRALLLIEGVAVAKLILLSLAYPFRGPRP*
Ga0066388_1014642363	3300005332	Tropical Forest Soil	AADANLQLIKIVTGKLPFDWGSKVESALRIFGADRALLLIEGVAIAKVVMLGFAYPFRRRR*
Ga0070667_1010403201	3300005367	Switchgrass Rhizosphere	ASKTESALRIFGADRALLLVEGIALAKLIMLGVAQPFRRRRP*
Ga0070713_1000961035	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	KAESALRIFGADRALLLVEGIAIAKLIMLAIAYPFRRGR*
Ga0070710_104942861	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	LTQLLPPDWASKAESALRIFGADRALLLVEGIALAKLIMLAIAYPFRRGR*
Ga0070681_105841542	3300005458	Corn Rhizosphere	WASRVESALRIFGADRALLLVEGIALAKIIMLSLAYPFRRRS*
Ga0070672_1016415752	3300005543	Miscanthus Rhizosphere	LPRDWSSKVESALRIFGADRALLLVEAVAVAKLLMLGVAYPFRRR*
Ga0066700_106116081	3300005559	Soil	SKIESALRIFGADRALLLIEGVAIAKVVMLGFAYPFRRRRR*
Ga0066670_108171821	3300005560	Soil	IKTVSRFLPFDWGGKVESALRIFGADRALLLIESVALAKLMMLGVAYPFRRDRP*
Ga0066705_109697971	3300005569	Soil	ADGNLQLIKIVTSKLPFDWGSKVESALRIFGADRALLLIEGVAIAKVVMLGFAYPFRRRR
Ga0066708_108844632	3300005576	Soil	FDWGSKIESALRIFGADRALLLIESVALAKLIMLGIAYPLRRRR*
Ga0066708_110173561	3300005576	Soil	DENLLLIKTVTRSLPFDWGSKIESALRIFGADRALLLIESIALAKLIMLGIAYPFRRRR*
Ga0068864_1010734562	3300005618	Switchgrass Rhizosphere	LDWASKSESALRMFGADRALLLIEGVALAKLLMLAVAYPFRRRR*
Ga0068866_105110731	3300005718	Miscanthus Rhizosphere	RDWSSKVESALRIFGADRALLLVEAVAVAKLVMLGVAYPFRRR*
Ga0066903_1007023551	3300005764	Tropical Forest Soil	SALRIFGADRALLLIEGVAIAKVVMLGFAYPFRRRR*
Ga0066903_1085250923	3300005764	Tropical Forest Soil	TRVLPFDWGSKVESALRIFGADRALLLIEGVVIAKVIMLSIAYPFRRRRP*
Ga0068863_1012934231	3300005841	Switchgrass Rhizosphere	PAHWASKTESALRIFGADRALLLVEGIAVAKLVLLAVAQPFRRRRP*
Ga0068863_1026348361	3300005841	Switchgrass Rhizosphere	REITRLLPLDWASKSESALRMFGADRALLLIEGVALAKLLMLAVAYPFRRRR*
Ga0066651_100994801	3300006031	Soil	LPLDWASKVESALRIFGADRALLLIEGVAVAKLIMLSLAFSFRRFGR*
Ga0070712_1012019591	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	IKTLTQLLPPDWASKAESALRIFGADRALLLVEGIAIAKLVMLAIAYPFRRGR*
Ga0070765_1022608902	3300006176	Soil	DLLKTVTGTLPPDWGSKIESALRIFGADRALLLIESVVVAKAILLGIAYPFRRRQPMP*
Ga0075425_1027935142	3300006854	Populus Rhizosphere	TRLLPRDWSSKVESALRIFGADRALLLVEAVAVAKLLMLGVAYPFRRR*
Ga0075434_1003517721	3300006871	Populus Rhizosphere	IKTVTGLLPLDLASKAESALRIFGADRALLLIEGVAVAKLILLALAHPFRRFRP*
Ga0079219_105379631	3300006954	Agricultural Soil	LPFDWGKKVESALRIFGADRALLLIEGVAFAKVIMLGFAYPFRRRR*
Ga0066709_1032419871	3300009137	Grasslands Soil	AESALRIFGADRALLLVEAIALAKLIMLAVAYPFRRGR*
Ga0099792_100668911	3300009143	Vadose Zone Soil	PDWASKAESALRIFGADRALLLVEGIAIAKLIMLAIAYPFRRGR*
Ga0099792_101896412	3300009143	Vadose Zone Soil	RIIKTLTQLLPPDWASKAESALRIFGADRALLLVEGIAIAKLIMLAIAYPFRRGR*
Ga0126380_100472361	3300010043	Tropical Forest Soil	NLQLIKIVTSKLPFDWGSKVESALRIFGADRALLLIEGVVIAKVIMLSIAYPFRHRRP*
Ga0126373_111720811	3300010048	Tropical Forest Soil	SKVESALRIFGADRALLLIEGVAIAKVVMLSIAYPFRRRR*
Ga0127444_10641321	3300010113	Grasslands Soil	SKVESALRIFGADRALLLMEGVAVAKLVMLSLAYPFRGFRR*
Ga0134063_103735301	3300010335	Grasslands Soil	DWVSKVESALRIFGADRALLLMEGVAVAKLIMLSLAYPFRGFRL*
Ga0126378_122583772	3300010361	Tropical Forest Soil	GSKVESALRIFGADRALLLIEGVAIAKVVMLGIAYPFRRRR*
Ga0126378_131900232	3300010361	Tropical Forest Soil	DWGSKIESALRIFGADRALLLIEGVAIAKVVMLGLAYPFRRRR*
Ga0126379_101370873	3300010366	Tropical Forest Soil	WASKAESALRIFGADRALLLVEGIAIAKLIMLAIAYPFRRGR*
Ga0126379_109957982	3300010366	Tropical Forest Soil	DANLQLIKIVTSKLPFDWGSKVESALRIFGADRALLLIEGVVIAKVIMLSIAYPFRHRRP
Ga0126381_1005818286	3300010376	Tropical Forest Soil	TSKLPFDWGSKVESALRIFGADRALLLIEGVAIAKVVMLGIAYPFRRGR*
Ga0126381_1031594401	3300010376	Tropical Forest Soil	ADANLQLIKIVTSKLPFDWGSKVESALRIFGADRALLLIEGVAIAKVVMLSIAYPFRRRR
Ga0126381_1033055563	3300010376	Tropical Forest Soil	ADANLQLIKIVTSKLPFDWGSKVESALRIFGADRALLLIEGVAIAKVVMLSTAYPFRRRR
Ga0126381_1037603021	3300010376	Tropical Forest Soil	TGKLPFDWGSKVESALRIFGADRALLLIEGVAIAKIVMLGFAYPFRRRR*
Ga0126381_1039223751	3300010376	Tropical Forest Soil	KIVTSKLPFDWGSKIESALRIFGADRALLLIEGVAIAKIVMLGIAYPFRRRR*
Ga0126381_1044326071	3300010376	Tropical Forest Soil	KLPFDWGSKVESALRIFGADRALLLIEGVVIAKVIMLSIAYPFRHRRP*
Ga0126383_123631681	3300010398	Tropical Forest Soil	LPFDWGSKVESALRIFGADRALLLIEGVVIAKVIMLSIAYPFRHRRP*
Ga0126383_129380551	3300010398	Tropical Forest Soil	ADANLQLIKIVTSKLPFDWGSKIESALRIFGADRAVLLIEGVAIAKVVMLGIAYPFRPRR
Ga0134127_112729432	3300010399	Terrestrial Soil	ENLRLIKEITQLLPPDWASKAESALRIFGADRALLLVEGIAIAKLLMLAIAYPFRRRIR*
Ga0124850_10644791	3300010863	Tropical Forest Soil	PFDWGSKVESALRIFGADRALLLIEGVAIAKVVMLGFAYPFRRRR*
Ga0137388_108090371	3300012189	Vadose Zone Soil	WASKTESALRMFGADRALLLIEGVAIAKLIMLGIAQPFRRRRP*
Ga0137399_103505262	3300012203	Vadose Zone Soil	VIAAPASKAESALRIFGADRALLLVEGIAIAKLIMLAIAYPFRRGR*
Ga0137399_105803703	3300012203	Vadose Zone Soil	TSLLPLDWPSKVESVLRILGADRALLLIEGVAAAKIIMLSLAYPFRRPRP*
Ga0137370_101054153	3300012285	Vadose Zone Soil	TKLLPLDWASKVESALRIFGADRALLLIEGVAVAKLIMLSLAFSFRRFGR*
Ga0137398_100682894	3300012683	Vadose Zone Soil	VESALRIFGADRALLLVEGIVIAKVVMLGIAHPFRHRRP*
Ga0137395_109118252	3300012917	Vadose Zone Soil	DWASKAESALRIFGADRALLLVEGIAIAKLIMLAIAYPFRRGR*
Ga0137394_104806131	3300012922	Vadose Zone Soil	TQLLPPDWASKAESALRIFGADRALLLVEGIAIAKLIMLAIAYPFRRGR*
Ga0137419_116312192	3300012925	Vadose Zone Soil	PPDWASKAESALRIFGADRALLLVEGIAIAKLIMLAIAYPFRRGR*
Ga0137410_116470951	3300012944	Vadose Zone Soil	WASKTESALRIFGADRALLLVEGVAVAKLIMLGIAQPFRRRRP*
Ga0163162_134095461	3300013306	Switchgrass Rhizosphere	DWASKAESALRIFGADRALLLVESVALAKFIMLAVAYPFRRKR*
Ga0157375_106442891	3300013308	Miscanthus Rhizosphere	RDWSSKVESALRIFGADRALLLVEAVAVAKLLMLGVAYPFRRR*
Ga0182008_105374071	3300014497	Rhizosphere	DWASKSESALRMFGADRALLLIEGVALAKLLMLAVAYPFRRRR*
Ga0157379_121125911	3300014968	Switchgrass Rhizosphere	NLRLIKAVTQQLPPDWASKTESALRIFGADRALLLIEGVAIAKLVMLGLAYPFRRQRG*
Ga0137420_10850851	3300015054	Vadose Zone Soil	ESVLRILGADRALLLIEGVAAAKIIMLSLAYPFRRPRP*
Ga0137420_12010522	3300015054	Vadose Zone Soil	VSCPPDWASKTESALRIFGADRALLLVEGVAVAKLIMLGIAQPFRRRRP*
Ga0132256_1039008921	3300015372	Arabidopsis Rhizosphere	DWASKTESALRIFGADRALLLVEGIALAKLIMLGVAQPFRRRRP*
Ga0182041_109780081	3300016294	Soil	SALRIFGADRALLLVEGVALAKLIMLGIAQPFRRGRPWRRN
Ga0182032_112461291	3300016357	Soil	IKIITSKLPFDWGSKVESALRIFGADRALLLIEDVAIAKVVMLGIAYPFRRRR
Ga0190272_133236451	3300018429	Soil	ESALRIYGADRALLLIEGVALAKLLMLAVAYPFRRRH
Ga0066655_112528541	3300018431	Grasslands Soil	KTESALRMFGADRALLLVEGVAVTKLIMLGIAQPFRRRRP
Ga0066662_109119201	3300018468	Grasslands Soil	DWASKAESAFRNFGADRALLLVEGIAIAKLIMLAVAYPFRRGR
Ga0193751_10336604	3300019888	Soil	LPVDWGSKVESALRIFGADRALLLVEGIVIAKVVMLGIAHPFRHRRP
Ga0210403_107808581	3300020580	Soil	NLRIIKTLTQLLPPDWASKAESALRIFGADRALLLVEGIAIAKLIMLAIAYPFRRGR
Ga0210399_110408413	3300020581	Soil	AESALRIFGADRALLLVEGIAIAKLIMLAIAYPFRRGR
Ga0210401_108369451	3300020583	Soil	SALRIFGADRALLLVEGIAIAKLIMLAIAYPFRRGR
Ga0210400_101711063	3300021170	Soil	DWASKAESALRIFGADRALLLVEGIAIAKLIMLAIAYPFRRGR
Ga0210388_114441062	3300021181	Soil	LPFYWGSKVESALRIFGADRALLLIEGVAIAKIIMLGIALLFRRRRR
Ga0210393_103662073	3300021401	Soil	ASKTESALRMFGADRALLLVEGVAVAKLIMLGIAQPFRRRRP
Ga0210384_109837612	3300021432	Soil	LLPPDWASKAESALRIFGADRALLLVEGIAIAKIIMLAIAYPFRRGR
Ga0210391_107014302	3300021433	Soil	WGSKIESALRIFGADRALLLIESVVVAKAILLGIAYPFRRRQPMP
Ga0210390_103710391	3300021474	Soil	LPFNWGSKAESALRLFGADRALLLIEGVAIAKVAMLGIAYFFRRCRQPML
Ga0210410_108757242	3300021479	Soil	LPFNWGSKAESALRLFGADRALLLIEGVAIAKVAMLGIAYFFRRRRQPML
Ga0126371_108289401	3300021560	Tropical Forest Soil	IVTSKLPFDWGSKVESALRIFGADRALLLIEGVAIAKVVMLSIAYPFRRRR
Ga0126371_122562661	3300021560	Tropical Forest Soil	KIVTSKLPFDWGSKVESALRIFGADRALLLIEGVAITKVVMLGIAYPFRRRG
Ga0242668_10771301	3300022529	Soil	IKTLTQLLPPDWASKAESGLRIFGADRALLLVEGIAIAKLIMLAIAYPFRRGR
Ga0207692_102331422	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	ALRIFGADRALLLIEGVAVAKLILLALAHPFRRFRP
Ga0207692_106299342	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	ESACRIFGADRALLLVEGIAIAKLIMLAVAYPFRRGR
Ga0207692_106526341	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	SALRIFGADRALLLVEGIALAKLIMLAIAYPFRRGR
Ga0207707_114246481	3300025912	Corn Rhizosphere	WASRVESALRIFGADRALLLVEGIALAKIIMLSLAYPFRRRS
Ga0207663_106099771	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	WASKAESALRIFGADRALLLVEGIAIAKLIMLAIAYPFRRGR
Ga0207711_118919361	3300025941	Switchgrass Rhizosphere	LIKEITRLLPRDWSSKVESALRIFGADRALLLVEAVAVAKLLMLGVAYPFRRR
Ga0207676_122078151	3300026095	Switchgrass Rhizosphere	LDWASKSESALRMFGADRALLLIEGVALAKLLMLAVAYPFRRRR
Ga0209581_12259961	3300027706	Surface Soil	PFDWGSKAESALRIFGADRALLLVEGIGVAKLIMLAMAHPFRRSR
Ga0209656_104569172	3300027812	Bog Forest Soil	LPFDWGSKAESALRLFGADRALLLIEAIGIAKLVMLGIAHPFRRRP
Ga0209488_101122163	3300027903	Vadose Zone Soil	IIKTLTQLLPPDWASKAESALRIFGADRALLLVEGIAIAKLIMLAIAYPFRRGR
Ga0308309_102458811	3300028906	Soil	AESAFRIFGADRALLLVEGIAIAKLIMLAIAYPFRRGR
Ga0318541_106155121	3300031545	Soil	DWASKTESALRIFGADRALLLVEGVALAKLIMLGIAQPFRRRRS
Ga0310887_107336011	3300031547	Soil	TRLLPPDWASKSESALRIFGADRALLLIEGVALAKLLMLAVAYPFRRRRLSDF
Ga0318561_102751783	3300031679	Soil	AQSGGKTESALRIFGADRALLLVEGVALAKLIMLGIAQPFRRGRPWRRN
Ga0318561_105230811	3300031679	Soil	QLIKFVTSKLPFDWGSKVESALRIFGADRALLLIEGVAIAKVVMLGIAYPFRRRR
Ga0318494_102143842	3300031751	Soil	FGADRALLLVEGVALAKLIMLGIAQPFRRRRPWRRN
Ga0310917_105308561	3300031833	Soil	WGSKVESALRIFGADRALLLIEGVAIAKVVMLGIAYPFRRRR
Ga0318520_110220131	3300031897	Soil	IKTITRVLPFDWGSKVESALRIFGADRALLLIEGVVIAKVIMLSIAYPFRRRQP
Ga0306923_104537403	3300031910	Soil	ADANLQLIKIVTSKLPFDWGSKVESALRIFGADRALLLIEGVAIAKVVMLGIAYPFRRRR
Ga0306921_122301281	3300031912	Soil	ESALRIFGADRALLLVEGVALAKLIMLGIAQPFRRRRS
Ga0310916_110449842	3300031942	Soil	AAADANLQLIKIVTSKLPFDWGSKVESALRIFGADRALLLIEGVAIAKVVMLGIAYPFRRRR
Ga0310910_109186011	3300031946	Soil	SALRIFGADRALLLVEGVALAKLIMLGIAQPFRRRRS
Ga0310911_104370952	3300032035	Soil	KIVTGKLPFDWGSKVESALRIFGADRALLLIEGVAIAKVVMLGFAYPFRRRR
Ga0318533_100543375	3300032059	Soil	IKIVTSKLPFDWGSKVESALRIFGADRALLLIEGVAIAKVVMLGIAYPFRRRR
Ga0306924_109229072	3300032076	Soil	LQLIKIVTGKLPFEWGSKVESALRIFGADRALLLIEGVALAKFAMLGFAYPFRRRR
Ga0306924_119698262	3300032076	Soil	LPFDWGSKVESALRIFGADRALLLIEGVAIAKVVMLGIAYPFRRRR
Ga0307470_106447191	3300032174	Hardwood Forest Soil	FDWPSKIESALRIFGADRALLLIEAVAVAKLIMLSFAYPFRRPRP
Ga0306920_1041368001	3300032261	Soil	IKIITSKLPFDWGSKVESALRIFGADRALLLIEGVAIAKVVMLGIAYPFRRRR