Metagenome Family F083014

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F083014
Family Type	Metagenome
Number of Sequences	113
Average Sequence Length	53 residues
Representative Sequence	MPFILGVLIAIGLSATLVSVMLGNTFGDHPMFVALGQTLAILGAAFFAWWLGR
Number of Associated Samples	96
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	81.42 %
% of genes near scaffold ends (potentially truncated)	30.09 %
% of genes from short scaffolds (< 2000 bps)	85.84 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (76.106 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (15.929 % of family members)
Environment Ontology (ENVO)	Unclassified (32.743 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (49.558 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 77.36% β-sheet: 0.00% Coil/Unstructured: 22.64%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF04120	Iron_permease	50.44
PF02586	SRAP	9.73
PF02245	Pur_DNA_glyco	4.42
PF03073	TspO_MBR	4.42
PF13628	DUF4142	1.77
PF13586	DDE_Tnp_1_2	0.88
PF07883	Cupin_2	0.88
PF07992	Pyr_redox_2	0.88
PF06226	DUF1007	0.88
PF03631	Virul_fac_BrkB	0.88
PF14023	DUF4239	0.88
PF00199	Catalase	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	9.73
COG2094	3-methyladenine DNA glycosylase Mpg	Replication, recombination and repair [L]	4.42
COG3476	Tryptophan-rich sensory protein TspO/CrtK (mitochondrial benzodiazepine receptor homolog)	Signal transduction mechanisms [T]	4.42
COG0753	Catalase	Inorganic ion transport and metabolism [P]	0.88
COG1295	Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)	Function unknown [S]	0.88
COG3683	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	76.11 %
Unclassified	root	N/A	23.89 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	76.11 %
Unclassified	root	N/A	23.89 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	76.11 %
Unclassified	root	N/A	23.89 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	60.18 %
Unclassified	root	N/A	23.89 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	25.66 %
Unclassified	root	N/A	23.89 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.89 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	21.24 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.89 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	12.39 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	1.77 %
Xanthomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.89 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	8.85 %
Rhizobiales bacterium 65-79	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium 65-79	3.54 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.88 %
Xanthomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.89 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	8.85 %
Rhizobiales bacterium 65-79	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium 65-79	3.54 %
Mesorhizobium albiziae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium albiziae	0.88 %
Xanthomonas citri group	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas → Xanthomonas citri group	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.89 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	8.85 %
Rhizobiales bacterium 65-79	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium 65-79	3.54 %
Xanthomonas citri	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas → Xanthomonas citri group → Xanthomonas citri	0.88 %
Mesorhizobium albiziae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium albiziae	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2067725004\|GPKC_F5V46DG04IMERR	Not Available	521	Open in IMG/M
2088090014\|GPIPI_16826685	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1470	Open in IMG/M
2088090014\|GPIPI_16995955	All Organisms → cellular organisms → Bacteria	2223	Open in IMG/M
2088090015\|GPICI_8902690	All Organisms → cellular organisms → Bacteria → Proteobacteria	5684	Open in IMG/M
2228664021\|ICCgaii200_c1084909	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M
3300000550\|F24TB_10499994	All Organisms → cellular organisms → Bacteria	759	Open in IMG/M
3300000789\|JGI1027J11758_13001811	Not Available	587	Open in IMG/M
3300000890\|JGI11643J12802_10405115	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2308	Open in IMG/M
3300000953\|JGI11615J12901_10938143	All Organisms → cellular organisms → Bacteria → Proteobacteria	704	Open in IMG/M
3300000955\|JGI1027J12803_100000336	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	728	Open in IMG/M
3300004156\|Ga0062589_102049523	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium 65-79	582	Open in IMG/M
3300004463\|Ga0063356_100328799	All Organisms → cellular organisms → Bacteria → Proteobacteria	1916	Open in IMG/M
3300004463\|Ga0063356_102092593	Not Available	859	Open in IMG/M
3300004463\|Ga0063356_102163238	All Organisms → cellular organisms → Bacteria → Proteobacteria	846	Open in IMG/M
3300004479\|Ga0062595_101342505	Not Available	647	Open in IMG/M
3300004480\|Ga0062592_101343532	All Organisms → cellular organisms → Bacteria	677	Open in IMG/M
3300004643\|Ga0062591_102186981	Not Available	575	Open in IMG/M
3300005093\|Ga0062594_102481950	Not Available	569	Open in IMG/M
3300005295\|Ga0065707_10353506	All Organisms → cellular organisms → Bacteria → Proteobacteria	915	Open in IMG/M
3300005332\|Ga0066388_100269302	All Organisms → cellular organisms → Bacteria → Proteobacteria	2345	Open in IMG/M
3300005332\|Ga0066388_102769697	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	895	Open in IMG/M
3300005338\|Ga0068868_102137962	All Organisms → cellular organisms → Bacteria → Proteobacteria	533	Open in IMG/M
3300005339\|Ga0070660_101543630	Not Available	565	Open in IMG/M
3300005367\|Ga0070667_101569553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium 65-79	618	Open in IMG/M
3300005435\|Ga0070714_100552294	All Organisms → cellular organisms → Bacteria	1103	Open in IMG/M
3300005436\|Ga0070713_100201919	Not Available	1796	Open in IMG/M
3300005439\|Ga0070711_100060581	All Organisms → cellular organisms → Bacteria	2631	Open in IMG/M
3300005444\|Ga0070694_100478653	Not Available	987	Open in IMG/M
3300005545\|Ga0070695_100235164	All Organisms → cellular organisms → Bacteria → Proteobacteria	1326	Open in IMG/M
3300005563\|Ga0068855_101704401	Not Available	642	Open in IMG/M
3300005577\|Ga0068857_101434646	Not Available	672	Open in IMG/M
3300005614\|Ga0068856_100985033	Not Available	861	Open in IMG/M
3300005616\|Ga0068852_102348576	Not Available	554	Open in IMG/M
3300005764\|Ga0066903_100136512	All Organisms → cellular organisms → Bacteria → Proteobacteria	3470	Open in IMG/M
3300005764\|Ga0066903_100464768	All Organisms → cellular organisms → Bacteria → Proteobacteria	2123	Open in IMG/M
3300005764\|Ga0066903_102084375	All Organisms → cellular organisms → Bacteria → Proteobacteria	1091	Open in IMG/M
3300005764\|Ga0066903_105389627	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	675	Open in IMG/M
3300006028\|Ga0070717_12163728	Not Available	500	Open in IMG/M
3300006049\|Ga0075417_10138936	All Organisms → cellular organisms → Bacteria	1125	Open in IMG/M
3300006175\|Ga0070712_101811474	All Organisms → cellular organisms → Bacteria → Proteobacteria	534	Open in IMG/M
3300006806\|Ga0079220_10458371	All Organisms → cellular organisms → Bacteria	856	Open in IMG/M
3300006845\|Ga0075421_100750650	All Organisms → cellular organisms → Bacteria → Proteobacteria	1129	Open in IMG/M
3300006852\|Ga0075433_10559681	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1005	Open in IMG/M
3300006852\|Ga0075433_11329513	Not Available	622	Open in IMG/M
3300006854\|Ga0075425_100301486	All Organisms → cellular organisms → Bacteria → Proteobacteria	1844	Open in IMG/M
3300006904\|Ga0075424_100200086	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2122	Open in IMG/M
3300006954\|Ga0079219_10251759	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1051	Open in IMG/M
3300007076\|Ga0075435_100627157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	933	Open in IMG/M
3300009092\|Ga0105250_10476936	All Organisms → cellular organisms → Bacteria → Proteobacteria	563	Open in IMG/M
3300009100\|Ga0075418_11335864	All Organisms → cellular organisms → Bacteria → Proteobacteria	777	Open in IMG/M
3300009156\|Ga0111538_10316693	Not Available	1974	Open in IMG/M
3300009156\|Ga0111538_10864125	All Organisms → cellular organisms → Bacteria → Proteobacteria	1145	Open in IMG/M
3300009162\|Ga0075423_11158576	All Organisms → cellular organisms → Bacteria → Proteobacteria	824	Open in IMG/M
3300009162\|Ga0075423_11199319	Not Available	810	Open in IMG/M
3300010375\|Ga0105239_12014546	All Organisms → cellular organisms → Bacteria → Proteobacteria	670	Open in IMG/M
3300010376\|Ga0126381_101065382	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1167	Open in IMG/M
3300010399\|Ga0134127_11866032	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium 65-79	678	Open in IMG/M
3300010403\|Ga0134123_13044255	Not Available	538	Open in IMG/M
3300012885\|Ga0157287_1097139	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	541	Open in IMG/M
3300012891\|Ga0157305_10117913	Not Available	676	Open in IMG/M
3300012903\|Ga0157289_10080631	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	893	Open in IMG/M
3300012906\|Ga0157295_10223160	All Organisms → cellular organisms → Bacteria → Proteobacteria	615	Open in IMG/M
3300012910\|Ga0157308_10021050	All Organisms → cellular organisms → Bacteria → Proteobacteria	1465	Open in IMG/M
3300012911\|Ga0157301_10159281	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas → Xanthomonas citri group → Xanthomonas citri	726	Open in IMG/M
3300012914\|Ga0157297_10140791	Not Available	775	Open in IMG/M
3300012957\|Ga0164303_11035112	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300012957\|Ga0164303_11533083	Not Available	505	Open in IMG/M
3300012971\|Ga0126369_12028236	All Organisms → cellular organisms → Bacteria → Proteobacteria	663	Open in IMG/M
3300012985\|Ga0164308_11173535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	692	Open in IMG/M
3300012988\|Ga0164306_10503651	All Organisms → cellular organisms → Bacteria	932	Open in IMG/M
3300013096\|Ga0157307_1118458	All Organisms → cellular organisms → Bacteria → Proteobacteria	583	Open in IMG/M
3300013100\|Ga0157373_10407865	All Organisms → cellular organisms → Bacteria → Proteobacteria	974	Open in IMG/M
3300013296\|Ga0157374_11396655	Not Available	723	Open in IMG/M
3300013297\|Ga0157378_10391060	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1368	Open in IMG/M
3300013306\|Ga0163162_10702425	All Organisms → cellular organisms → Bacteria → Proteobacteria	1133	Open in IMG/M
3300013307\|Ga0157372_13434333	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium 65-79	504	Open in IMG/M
3300014325\|Ga0163163_10326448	All Organisms → cellular organisms → Bacteria	1589	Open in IMG/M
3300014325\|Ga0163163_12154518	All Organisms → cellular organisms → Bacteria → Proteobacteria	617	Open in IMG/M
3300014969\|Ga0157376_10065138	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	3076	Open in IMG/M
3300015201\|Ga0173478_10025650	Not Available	1730	Open in IMG/M
3300015371\|Ga0132258_10300567	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3947	Open in IMG/M
3300017792\|Ga0163161_10324597	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1218	Open in IMG/M
3300017792\|Ga0163161_10594313	All Organisms → cellular organisms → Bacteria → Proteobacteria	912	Open in IMG/M
3300018028\|Ga0184608_10008107	All Organisms → cellular organisms → Bacteria	3493	Open in IMG/M
3300018072\|Ga0184635_10185542	All Organisms → cellular organisms → Bacteria	830	Open in IMG/M
3300019356\|Ga0173481_10037761	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1592	Open in IMG/M
3300019361\|Ga0173482_10178135	Not Available	852	Open in IMG/M
3300019361\|Ga0173482_10282729	All Organisms → cellular organisms → Bacteria → Proteobacteria	721	Open in IMG/M
3300021560\|Ga0126371_10261964	All Organisms → cellular organisms → Bacteria → Proteobacteria	1846	Open in IMG/M
3300021560\|Ga0126371_10494261	All Organisms → cellular organisms → Bacteria → Proteobacteria	1371	Open in IMG/M
3300022756\|Ga0222622_10901799	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300022880\|Ga0247792_1092863	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium albiziae	612	Open in IMG/M
3300022883\|Ga0247786_1049176	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	852	Open in IMG/M
3300025901\|Ga0207688_10691633	All Organisms → cellular organisms → Bacteria → Proteobacteria	645	Open in IMG/M
3300025904\|Ga0207647_10043716	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2801	Open in IMG/M
3300025914\|Ga0207671_11325069	All Organisms → cellular organisms → Bacteria → Proteobacteria	560	Open in IMG/M
3300025914\|Ga0207671_11329227	Not Available	559	Open in IMG/M
3300025915\|Ga0207693_10054368	All Organisms → cellular organisms → Bacteria → Proteobacteria	3141	Open in IMG/M
3300025921\|Ga0207652_10997530	Not Available	736	Open in IMG/M
3300025929\|Ga0207664_10079868	All Organisms → cellular organisms → Bacteria	2657	Open in IMG/M
3300025929\|Ga0207664_10180552	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1811	Open in IMG/M
3300025933\|Ga0207706_10075884	All Organisms → cellular organisms → Bacteria → Proteobacteria	2957	Open in IMG/M
3300025942\|Ga0207689_10961344	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	721	Open in IMG/M
3300027036\|Ga0207467_1009359	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	740	Open in IMG/M
3300027424\|Ga0209984_1059457	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300027907\|Ga0207428_10483269	All Organisms → cellular organisms → Bacteria → Proteobacteria	901	Open in IMG/M
3300027909\|Ga0209382_11538669	Not Available	661	Open in IMG/M
3300028592\|Ga0247822_11039073	All Organisms → cellular organisms → Bacteria → Proteobacteria	678	Open in IMG/M
3300028809\|Ga0247824_11067561	All Organisms → cellular organisms → Bacteria → Proteobacteria	514	Open in IMG/M
3300028828\|Ga0307312_10512870	All Organisms → cellular organisms → Bacteria	792	Open in IMG/M
3300031740\|Ga0307468_101166624	All Organisms → cellular organisms → Bacteria → Proteobacteria	692	Open in IMG/M
3300033475\|Ga0310811_11299357	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	580	Open in IMG/M
3300033551\|Ga0247830_10060024	All Organisms → cellular organisms → Bacteria	2539	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	61.06%
Host-Associated	Host-Associated	38.94%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	58.41%
Plants	Host-Associated → Plants	38.94%
Aquatic	Environmental → Aquatic	2.65%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	58.41%
Rhizosphere	Host-Associated → Plants → Rhizosphere	23.01%
Rhizoplane	Host-Associated → Plants → Rhizoplane	14.16%
Sediment	Environmental → Aquatic → Sediment	2.65%
Roots	Host-Associated → Plants → Roots	1.77%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	42.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	20.35%
Loam	Environmental → Terrestrial → Soil → Loam	15.93%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	13.27%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.65%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.65%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.12%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	20.35%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	13.27%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.73%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	8.85%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.31%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.65%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.65%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.77%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.89%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	15.93%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	12.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.19%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.31%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.31%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	4.42%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.54%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	3.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	2.65%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.65%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.65%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.77%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.77%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	1.77%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.77%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.77%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.89%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.89%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2067725004	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2088090015	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012885	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1	Environmental	Open in IMG/M
3300012891	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S148-409B-2	Environmental	Open in IMG/M
3300012903	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S134-311R-1	Environmental	Open in IMG/M
3300012906	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1	Environmental	Open in IMG/M
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012914	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013096	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300022880	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S106-311C-6	Environmental	Open in IMG/M
3300022883	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S066-202C-4	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027036	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07A5-10 (SPAdes)	Environmental	Open in IMG/M
3300027424	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPKC_00282000	2067725004	Soil	MPFILGVLIAIGLSATLVAVMLENTFGGQPMFVALGHMLAILGAAIFAWWLGR
GPIPI_01331820	2088090014	Soil	MQFVLGVLIAIALVATLVSLTLRSIFGDDLMFVALGQTLAIVGAAAFSWWLGR
GPIPI_02537380	2088090014	Soil	MPFILGVXIAIGLSATLVSVMLGNTFGDHPMFVALGQTLAILGAAFFAWWLGR
GPICI_03513080	2088090015	Soil	MPFILGVLIAIGLSATLVSVMLGNTFGDHPMFVALGQTLAILGAAFFAWWLGR
ICCgaii200_10849092	2228664021	Soil	MPFIFGVLIAIGLSATVISITLGDIFGETPLFVALGQCLAILGAAAFAWWLAR
F24TB_104999942	3300000550	Soil	MPFILGVLIAIGLSATLVSVMLGNTFGDHPMFVALGQTLAILGAAFFAWWLGR*
JGI1027J11758_130018111	3300000789	Soil	MQFILGVVIDIGLSVTLVSVVLGNTFGDHPMFVALGQTLAILGAAIFAWWLGR*
JGI11643J12802_104051152	3300000890	Soil	MQFILGVLIDIGLSVTLVSVVLGNTFGDHPMFVALGQTLAILGAAFFAWWLGR*
JGI11615J12901_109381432	3300000953	Soil	MQFVLGVLIAIALVAVSLMLGSIFGDDPMFVALGQTLAIVGAATFAGGLEDRL
JGI1027J12803_1000003361	3300000955	Soil	MQFILGVLIDIGLSVTLVSVVLGNTFGDHPMFVALGQTLAILGAAFFAWWLGR
Ga0062589_1020495232	3300004156	Soil	MPFILGVLIAIGLSATLVAVMLENTFGGQPMFVALGQTLAILGAAIFAWWLGR*
Ga0063356_1003287991	3300004463	Arabidopsis Thaliana Rhizosphere	MPFVLGVLIAIGLTATAISLTLDIFGEAPIFVALGQCPAILGAAAFAW*
Ga0063356_1020925931	3300004463	Arabidopsis Thaliana Rhizosphere	MQFVLGVLIAIALVATLVSLMLGSVFGDDPMFVALGQTLAIVGAATFAWWLGK*
Ga0063356_1021632381	3300004463	Arabidopsis Thaliana Rhizosphere	MQFILGVLIAIGLSVTLVSVVLGNTFGDHPMFVALGQTLAILGAAFFAWWLGR*
Ga0062595_1013425052	3300004479	Soil	MPFIFGVLIAIGLSATVISITLGDIFGEAPLFVALGQCLAILGAAAFAWWLAR*
Ga0062592_1013435322	3300004480	Soil	MPFILGVLIAIGLSATLVSVMLGNTFGDHAMFVALGQTLAILGAAFFAWWLGK*
Ga0062591_1021869811	3300004643	Soil	MQFVLGVLIAIALVATLVSLMLGSIFGDDPMFVALGQTLAIVGAATFAWWLGR*
Ga0062594_1024819501	3300005093	Soil	RMQFVLGVLIAIALVATLMSLMLGSIFGDDPMFVALGQTLAIAGAATFAWWLGK*
Ga0065707_103535063	3300005295	Switchgrass Rhizosphere	MPFILGVLIAIGLSATLVSVMLGNTFGDHPMFVALGQTLAILGAAF
Ga0066388_1002693023	3300005332	Tropical Forest Soil	MPFIFGVLIAIGLSATLVSVMLGNTFGDHPMFVALGQTLAVLGAAFFAWWLGR*
Ga0066388_1027696972	3300005332	Tropical Forest Soil	MPFILGMLIAIGLSATLISVTLGNTFGDHPAFMALGQTLAILGAAFFAWWLGR*
Ga0068868_1021379621	3300005338	Miscanthus Rhizosphere	MLRFVLGVLIASALAAILVSLALGSIFSSDPMFVALGQTIAILGAATFAWWLGRQDCKRRSS*
Ga0070660_1015436301	3300005339	Corn Rhizosphere	MQFVLGVLIAIALVATLMSLMLGSIFGDDPMFVALGQTLAIAGAATFAWWLGK*
Ga0070667_1015695532	3300005367	Switchgrass Rhizosphere	MQFVLGVLIAIALVATLVSLMLGSIFGDDPMFVALGQTLAIVGAATFAWWLGK*
Ga0070714_1005522942	3300005435	Agricultural Soil	MQFVLDVLIAIALVATLVSLTLRSIFGDDLMFVALGQTLAIVGAAAFSWWLGR*
Ga0070713_1002019193	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MQFVLGVLIAIALVATLVSLTLRSIFGDDLMFVALGQTLAIVGAAAFAWWLGR*
Ga0070711_1000605813	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MQFVLGVLIAIALVATLVSLTLRSIFGDDLMFVALGQTLAIVGAAAFSWWLGR*
Ga0070694_1004786533	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MQFVLGVLIAIALVATLVSLMLGRIFGDDPMCVALGQTLAIVGAATFAWWLGK*
Ga0070695_1002351642	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MQFVLGVLIAIALVATLVCLMLGSIFGDDPMFVALGQTLAIVGAATFAWWLGK*
Ga0068855_1017044013	3300005563	Corn Rhizosphere	VLIAIALVATLVSLTLRSIFGDDPMFVALGQTLAIAGAATFAWWLGK*
Ga0068857_1014346463	3300005577	Corn Rhizosphere	AIALVATLVSLMLGSIFGDDPMFVALGQTLAIVGAATFAWWLGK*
Ga0068856_1009850331	3300005614	Corn Rhizosphere	QGRMQFVLGVLIAIALVATLVSLMLGSIFGDDPMFVALGQTLAIVGAATFAWWLGK*
Ga0068852_1023485761	3300005616	Corn Rhizosphere	LGQGRMQFVLGVLIAIALVATLVSLMLGSIFGDDPMFVALGQTLAIVGAATFAWWLGK*
Ga0066903_1001365126	3300005764	Tropical Forest Soil	MPFILGVLVAIGISATLVSVTLGNTFGNHPVFMALGQTLAILGAAFFVWWLGR*
Ga0066903_1004647683	3300005764	Tropical Forest Soil	MPFILGVLIAIGLSATLVSVVLGNTFGDHPMFVVFGQTLAILGAAFFAWWLKR*
Ga0066903_1020843752	3300005764	Tropical Forest Soil	MPFIFGVLIAIGLSATLVSVMLGNTFGDHPMFVALGQTLAILGAAFFAWWLGR*
Ga0066903_1053896272	3300005764	Tropical Forest Soil	NSGINTPESHMPFILGVLIAIGLSATLVAVMLENSFGDQPIFVVLGQTLAILGAAVFAWWLGR*
Ga0070717_121637282	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MPFILGVLVAIGLSATLVSVMLGNTFGDHPIFAALGQTLAILGAAIFAWWLGR*
Ga0075417_101389361	3300006049	Populus Rhizosphere	RRLLWHKTPESHMQFILGVLLAIGLSATLVSVVLGNTFGDNPMFVALGQTLAILGAAFFAWWLGR*
Ga0070712_1018114741	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MQFVLGVLIAIALVATLVSLMLGSIFGDDPMFVALGQTLAIVGAATF
Ga0079220_104583712	3300006806	Agricultural Soil	MQFVLGVLIAIALVATLVSLTLRSIFGDDLMFVALGQTLAIVGAATFAWWLGR*
Ga0075421_1007506502	3300006845	Populus Rhizosphere	MPFILGVLIAIGLSATLVSVMLGNTFGDHAMFVALGQTLAILEAAFFAWWLGR*
Ga0075433_105596811	3300006852	Populus Rhizosphere	MPFILGVLIAIGLSATLVSVKLGNTFGDHAMFVALGQTLAILGAAFFAWW
Ga0075433_113295131	3300006852	Populus Rhizosphere	ESHMPFVLGVLIAIGLTATAISLTLDIFGEAPIFVALGQCPAILGAAAFAW*
Ga0075425_1003014864	3300006854	Populus Rhizosphere	VLIAIGLSVTLVSVVLGNTFGDHPMFVALGQTLAIFGAAFFAWWLGR*
Ga0075424_1002000864	3300006904	Populus Rhizosphere	MQFILGVLIAIGLSVTLVSVVLGNTFGDHPMFVALGQTLAIFGAAFFAWWLGR*
Ga0079219_102517593	3300006954	Agricultural Soil	MQFELGVLIAIALVATLVSLTLRSIFGDDLMFVALGQTLAIVGAAAFAWWLGR*
Ga0075435_1006271572	3300007076	Populus Rhizosphere	MPFILGVLIAIGLSATLVSVMLGNTFGDHAMFVALGQTLAILGAAFFAWWLGR*
Ga0105250_104769361	3300009092	Switchgrass Rhizosphere	MPFILGVLIAIGLSATLVSLMLGNTFGDHAMFVALGQTLAILGAAFFAWWLGK*
Ga0075418_113358642	3300009100	Populus Rhizosphere	MPFILGVLIAIGLSATLVSVKLGNTFGDHAMFVALGQTLAILGAAFFAWWLGK*
Ga0111538_103166931	3300009156	Populus Rhizosphere	YSDVSTPESHMPFILGVLIAIGLSATLVSVKPGNTFGDHAMFVALGQTLAILGAAFFAWWLGK*
Ga0111538_108641252	3300009156	Populus Rhizosphere	MQFILGVLLAIGLSATLVSVVLGNTFGDNPMFVALGQTLAILGAAFFAWWLGR*
Ga0075423_111585762	3300009162	Populus Rhizosphere	MPFILGVLIAIGLSATLVSVMLGNTFGDHALFVALGQTLAILEAAFFAWWLGR*
Ga0075423_111993193	3300009162	Populus Rhizosphere	FILGVLIAIGLSATLVSVKLGNTFGDHAMFVALGQTLAILGAAFFAWWLGK*
Ga0105239_120145461	3300010375	Corn Rhizosphere	MPFILGVLIAIGLSATLVSLMLGNTFGDHPMFVALGQTLAILGAAFFAWWLGR*
Ga0126381_1010653822	3300010376	Tropical Forest Soil	MPFILGVLIAIGLSATLVSVTLGNTFGDHPMFVVLGQTLAILGAAFFAWWLKR*
Ga0134127_118660322	3300010399	Terrestrial Soil	MPFILGVLIAIGLSATLVSVKLGNTFGDHAMFVALGQTLAILGAAFFAWWLGR*
Ga0134123_130442552	3300010403	Terrestrial Soil	AIGLSATLVSVKLGNTFGDHAMFVALGQTLAILGAAFFAWWLGK*
Ga0157287_10971392	3300012885	Soil	MQFVLGVLIAIALVATLVSLTLRSIFGDDLMFVALGQTLAMVGAAAFSWWLGR*
Ga0157305_101179131	3300012891	Soil	PCISTREGYVPFILGVLIAIGLSATLVAVMLGNTFGGQPMFVALGQTLAILGAAFFAWWLGR*
Ga0157289_100806311	3300012903	Soil	MQFVLGVLIVIALVATLVSLTLRSIFGDDLMFVALGQTLAIVGAATFAWWLGR*
Ga0157295_102231602	3300012906	Soil	MQFVLGVLIAIALVATLVSLTLRSIFGDDLMFVALGQTLAIVGAAAFSGGLEDRTF*
Ga0157308_100210504	3300012910	Soil	MPFILGVLIAIGLSATLVAVMLENSFGGQPMFVALGQTLAILGAAIFAWWLGR*
Ga0157301_101592811	3300012911	Soil	AVRVGSADRYALTATLVSVTLGSIFGDDLMFLALGQTLAIIGTATFAWWLGR*
Ga0157297_101407911	3300012914	Soil	MPFILGVLIAIGLSATLVAVMLGNTFGGQPMFVALGQTLAILGAAIFAWWLGR*
Ga0164303_110351121	3300012957	Soil	MQFVLGVLIAIALVATLVSLMLGSIFGDDPMFVALGQTLAIVGAATFAW
Ga0164303_115330832	3300012957	Soil	PFIIGVLIAIALSATVISITLGDIFGEAPLFVALGQCLAILGAAAFAWWLAR*
Ga0126369_120282361	3300012971	Tropical Forest Soil	MPFIFGVLIAIGLSATLVSVMLGNTFGDHPMFVALGQTLAILGAAFFAWWLKR*
Ga0164308_111735351	3300012985	Soil	VRQGRMLRFVLGVLIASALAAILVSLALGSIFSSVPMFVALGQTIAILGAATFAWWLGRQDFKRRSS*
Ga0164306_105036512	3300012988	Soil	MPFIIGVLIAIALSATVISITLGDIFGEAPLFVALGQCLAILGAAAFAWWLAR*
Ga0157307_11184581	3300013096	Soil	MQFVLGVLIAIALVATLVSLTLRSIFGDDLMFVALGQTLAIVGAATFAWWLGK*
Ga0157373_104078651	3300013100	Corn Rhizosphere	MQFVLGVLIAIALVATLVSLTLRSIFGDDLMFVALGQTLAIVGAAAFAWW
Ga0157374_113966551	3300013296	Miscanthus Rhizosphere	KLGQGRMQFVLGVLIAIALVATLVSLMLGSIFGDDPMFVALGQTLAIVGAATFAWWLGK*
Ga0157378_103910603	3300013297	Miscanthus Rhizosphere	MLRFVLGVLIASALAAILVSLALGSIFSSDPMFVALGQTIAILGAATFAWWLG
Ga0163162_107024252	3300013306	Switchgrass Rhizosphere	MPFILGVLIAIGLSATLVSVMLGNTFGDHPMFVALGQTLAILGAAFFAWWLGK*
Ga0157372_134343331	3300013307	Corn Rhizosphere	MQFVLGVLIAIALVATLVSLTLRSIFGDDLMFVALGQTLAIAGAATFAWWLGK*
Ga0163163_103264482	3300014325	Switchgrass Rhizosphere	MQFVLDVLIAIALVATLVSLTLRSIFGDDLMFVALGQTLAIVGAAAFAWWLGR*
Ga0163163_121545181	3300014325	Switchgrass Rhizosphere	MPFILGVLIAIGLSATLVSVMLGNTFADHAMFVALGQTLAILGAA
Ga0157376_100651386	3300014969	Miscanthus Rhizosphere	MQFVLGVLIAIALVATLVSLMLGSIFGDDPMFVALGQTLAIVGAAAFAWWLGR*
Ga0173478_100256502	3300015201	Soil	MPFILGVLIAIGLSATLVAVMLENTFGGQPMFVALGHTLAILGAAIFAWWLGR*
Ga0132258_103005675	3300015371	Arabidopsis Rhizosphere	MLRFVLGVLIASALAAILVSLALGSIFSSDPMFVALGQTIAILGAATFAWWLGRQYFKRRSS*
Ga0163161_103245972	3300017792	Switchgrass Rhizosphere	MPFIIGVLIAIALSATVISITLDDIFGEAPLFVALGQCLAILGAAAFAWWLAR
Ga0163161_105943132	3300017792	Switchgrass Rhizosphere	MPFILGVLIAIGLSATLVSVMLGNTFGDHPMFVALGQTLAILGAAFFAWWLGK
Ga0184608_100081072	3300018028	Groundwater Sediment	MPFIIGVLIAIALSATVISITLGDIFGEAPLFVALGQCLAILGAAAFAWWLAR
Ga0184635_101855421	3300018072	Groundwater Sediment	MQFIIGVLIAIALSATVISITLGDIFGEAPLFVALGQCLAILGAAAFAWWLAK
Ga0173481_100377612	3300019356	Soil	MPFILGVLIAIGLSATLVSVTLGNTFGDHPVFVALGQTLAILGAAFFAWWLGR
Ga0173482_101781352	3300019361	Soil	MPFILGVLIAIGLSATLVAVMLENTFGGQPMFVALGQTLAILGAAIFAWWLGR
Ga0173482_102827291	3300019361	Soil	MRFVLGALIAIALASTLVSLMLGSIFGNNPMFAALGQTLVIVGAATFAWWLGRNVH
Ga0126371_102619643	3300021560	Tropical Forest Soil	MPFILGVLIAIGLSATLVAVMLENSFGDQPIFVVLGQTLAMLGAAVFAWWLGR
Ga0126371_104942612	3300021560	Tropical Forest Soil	MPFILGVLVAIGISATLVSVTLGNTFGDHPMFVALGQTLAVLGAAFFAWWLGR
Ga0222622_109017992	3300022756	Groundwater Sediment	MPFIFGVLIAISLLATVISITLGDIFGEVPLFVALGQCLAILGAATFAWWLAR
Ga0247792_10928632	3300022880	Soil	MPFILGVLIAIGLSATLVAVMLENTFGGQPMFVALGQTLAILGAAIFAWW
Ga0247786_10491761	3300022883	Soil	MQFVLGVLIAIALVATLVSLTLRSIFGDDLMFVALGQTLAIVGAATFAWWLGR
Ga0207688_106916332	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MPFILGVLIAIGLSATLVSVMLGNTFGDHAMFVALGQTLAILGAAFFAWWLGK
Ga0207647_100437166	3300025904	Corn Rhizosphere	MQFVLGVLIAIALVATLVSLTLRSIFGDDLMFVALGQTLAIVGAAAFSW
Ga0207671_113250691	3300025914	Corn Rhizosphere	MQFVLGVLIAIALVATLVSLTLRSIFGDDLMFVALGQTLAIVGAAAFAWWL
Ga0207671_113292272	3300025914	Corn Rhizosphere	MQFVLGVLIAIALVATLVSLMLGSIFGDDPMFVALGQTLAIVGAATFAWWLGK
Ga0207693_100543683	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MQFVLGVLIAIALVATLVSLTLRSIFGDDLMFLALGQTLAIVGAAAFSWWLGR
Ga0207652_109975301	3300025921	Corn Rhizosphere	MQFVLGVLIAIALVATLVSLMLGSIFGDDPMFVALGQTLAIVGAATFAWWL
Ga0207664_100798682	3300025929	Agricultural Soil	MPFILGVLVAIGLSATLVSVMLGNTFGDHPMFVALGQTLAILGAAFFAWWLGR
Ga0207664_101805523	3300025929	Agricultural Soil	MQFVLDVLIAIALVATLVSLTLRSIFGDDLMFVALGQTLAIVGAAAFSWWLGR
Ga0207706_100758844	3300025933	Corn Rhizosphere	MQFVLGVLIAIALVATLVSLTLRSIFGDDLMFVALGQTLAIAGAATFAWWLGR
Ga0207689_109613442	3300025942	Miscanthus Rhizosphere	MQLVLGVLIAIALVATLVSLTLRSIFGDDLMFVALGQTLAIVGAAAFAWWLGR
Ga0207467_10093592	3300027036	Soil	IGLSATLVSVMLGNTFGDHPMFVALGQTLAIVGAAAFSWWLGR
Ga0209984_10594571	3300027424	Arabidopsis Thaliana Rhizosphere	MQFILGVLIAIGLSVTLVSVVLGNTFGDHPMFVALGQTLAILGAAFFAWWLGR
Ga0207428_104832693	3300027907	Populus Rhizosphere	MPFILGVLIAIGLSATLVSVKLGNTFGDHAMFVALGQTLAILGAAFFAWWLGK
Ga0209382_115386692	3300027909	Populus Rhizosphere	MPFILGVLIAIGLSATLVSVMLGNTFGDHAMFVALGQTLAILEAAFFAWWLGR
Ga0247822_110390731	3300028592	Soil	MPFIIGVLIAIALSATVISITLGDIFGEAPLFVALGQCLAILGAAVFAWWLAR
Ga0247824_110675611	3300028809	Soil	MPFIIGVLIAIALSATVISITLGDIFGEAPLFVALGQCLAILG
Ga0307312_105128702	3300028828	Soil	MPFIFGVLIAIALSATVISITLGDIFGEAPLFVALGQCLAILGAAAFAWWLAR
Ga0307468_1011666242	3300031740	Hardwood Forest Soil	MPFIIGVLIAIGLSATVISITLGDIFGDAPVFVALGQCLAILGAAVFAWWLAR
Ga0310811_112993571	3300033475	Soil	MPFILGVLIAIGLSATLVSVMLGNTFGDHPMFVALGQTLAILGAAFFA
Ga0247830_100600242	3300033551	Soil	VLIAIGLSATLVSVMLGNTFGDHPMFVALGQTLAILGAAFFAWWLGR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F083014

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences