Metagenome / Metatranscriptome Family F082991

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F082991
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	88 residues
Representative Sequence	MTGILALGCFVTGFIAAWLLRTGYVMTQISWAQQQMERKVRYWQGEAMHARGVAEHLLRQLEASTGRPPEPTDWPGPDTDWRRPDMN
Number of Associated Samples	88
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	73.21 %
% of genes near scaffold ends (potentially truncated)	23.89 %
% of genes from short scaffolds (< 2000 bps)	74.34 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (57.522 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil (14.159 % of family members)
Environment Ontology (ENVO)	Unclassified (34.513 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (68.142 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 55.65% β-sheet: 0.00% Coil/Unstructured: 44.35%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.52
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.52
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF13560	HTH_31	7.08
PF00174	Oxidored_molyb	6.19
PF13561	adh_short_C2	4.42
PF01243	Putative_PNPOx	3.54
PF12844	HTH_19	3.54
PF00106	adh_short	2.65
PF13191	AAA_16	2.65
PF10014	2OG-Fe_Oxy_2	2.65
PF01546	Peptidase_M20	1.77
PF00561	Abhydrolase_1	0.88
PF02653	BPD_transp_2	0.88
PF01266	DAO	0.88
PF13380	CoA_binding_2	0.88
PF06999	Suc_Fer-like	0.88
PF17147	PFOR_II	0.88
PF01032	FecCD	0.88
PF01261	AP_endonuc_2	0.88
PF16656	Pur_ac_phosph_N	0.88
PF00005	ABC_tran	0.88
PF00903	Glyoxalase	0.88
PF02775	TPP_enzyme_C	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG2041	Molybdopterin-dependent catalytic subunit of periplasmic DMSO/TMAO and protein-methionine-sulfoxide reductases	Energy production and conversion [C]	6.19
COG3915	Uncharacterized conserved protein	Function unknown [S]	6.19
COG4759	Uncharacterized conserved protein, contains thioredoxin-like domain	General function prediction only [R]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.52 %
All Organisms	root	All Organisms	42.48 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.52 %
cellular organisms	root	All Organisms → cellular organisms	42.48 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.52 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	42.48 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.52 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	37.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.52 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	35.40 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.52 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	18.58 %
Dehalococcoidia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.52 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	2.65 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.88 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.88 %
unclassified Dehalococcoidia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.52 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	1.77 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.88 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	0.88 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.52 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	1.77 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.88 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	0.88 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.52 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1.77 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.88 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	0.88 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001661\|JGI12053J15887_10170621	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1127	Open in IMG/M
3300002245\|JGIcombinedJ26739_100010181	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	7612	Open in IMG/M
3300002245\|JGIcombinedJ26739_100134629	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2333	Open in IMG/M
3300002245\|JGIcombinedJ26739_100383881	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1284	Open in IMG/M
3300002245\|JGIcombinedJ26739_100571869	All Organisms → cellular organisms → Bacteria	1007	Open in IMG/M
3300002245\|JGIcombinedJ26739_101155010	Not Available	662	Open in IMG/M
3300002568\|C688J35102_120883215	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2004	Open in IMG/M
3300003505\|JGIcombinedJ51221_10416285	Not Available	545	Open in IMG/M
3300004091\|Ga0062387_100817716	Not Available	696	Open in IMG/M
3300005434\|Ga0070709_11012031	Not Available	661	Open in IMG/M
3300005435\|Ga0070714_100280667	Not Available	1547	Open in IMG/M
3300005435\|Ga0070714_101155823	Not Available	755	Open in IMG/M
3300005436\|Ga0070713_101978096	Not Available	565	Open in IMG/M
3300005437\|Ga0070710_10369940	Not Available	953	Open in IMG/M
3300005439\|Ga0070711_100961134	Not Available	731	Open in IMG/M
3300005471\|Ga0070698_100679821	Not Available	971	Open in IMG/M
3300005524\|Ga0070737_10027449	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3653	Open in IMG/M
3300005529\|Ga0070741_10936149	Not Available	747	Open in IMG/M
3300005591\|Ga0070761_10446825	Not Available	793	Open in IMG/M
3300005591\|Ga0070761_10789758	Not Available	597	Open in IMG/M
3300005602\|Ga0070762_10284511	Not Available	1037	Open in IMG/M
3300005602\|Ga0070762_10618968	Not Available	720	Open in IMG/M
3300005610\|Ga0070763_10991015	Not Available	503	Open in IMG/M
3300005712\|Ga0070764_10530399	Not Available	711	Open in IMG/M
3300005921\|Ga0070766_10846293	Not Available	625	Open in IMG/M
3300006176\|Ga0070765_100263912	Not Available	1583	Open in IMG/M
3300006176\|Ga0070765_101264990	Not Available	696	Open in IMG/M
3300006804\|Ga0079221_10310475	Not Available	931	Open in IMG/M
3300006806\|Ga0079220_11938524	Not Available	523	Open in IMG/M
3300006954\|Ga0079219_10178106	Not Available	1175	Open in IMG/M
3300009623\|Ga0116133_1035815	Not Available	1228	Open in IMG/M
3300009638\|Ga0116113_1118449	Not Available	648	Open in IMG/M
3300010343\|Ga0074044_10043103	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	3126	Open in IMG/M
3300010379\|Ga0136449_101440890	Not Available	1060	Open in IMG/M
3300010867\|Ga0126347_1567825	Not Available	541	Open in IMG/M
3300010876\|Ga0126361_10063391	Not Available	1326	Open in IMG/M
3300010876\|Ga0126361_10141652	Not Available	766	Open in IMG/M
3300010876\|Ga0126361_11250883	Not Available	968	Open in IMG/M
3300010880\|Ga0126350_10403837	Not Available	503	Open in IMG/M
3300010880\|Ga0126350_12086523	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	706	Open in IMG/M
3300010880\|Ga0126350_12295461	Not Available	645	Open in IMG/M
3300011120\|Ga0150983_10103904	Not Available	519	Open in IMG/M
3300011120\|Ga0150983_13934578	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1303	Open in IMG/M
3300012096\|Ga0137389_11741308	Not Available	519	Open in IMG/M
3300012685\|Ga0137397_11292402	Not Available	519	Open in IMG/M
3300012927\|Ga0137416_10595408	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	962	Open in IMG/M
3300014164\|Ga0181532_10016456	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5512	Open in IMG/M
3300014492\|Ga0182013_10001726	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	29512	Open in IMG/M
3300014838\|Ga0182030_10044177	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7314	Open in IMG/M
3300015242\|Ga0137412_10053922	All Organisms → cellular organisms → Bacteria	3278	Open in IMG/M
3300017946\|Ga0187879_10060655	Not Available	2210	Open in IMG/M
3300017959\|Ga0187779_10702825	Not Available	684	Open in IMG/M
3300017973\|Ga0187780_10421112	Not Available	949	Open in IMG/M
3300018034\|Ga0187863_10199260	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1114	Open in IMG/M
3300018035\|Ga0187875_10426419	Not Available	707	Open in IMG/M
3300020582\|Ga0210395_10192289	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1530	Open in IMG/M
3300021088\|Ga0210404_10096167	Not Available	1485	Open in IMG/M
3300021181\|Ga0210388_10220918	Not Available	1660	Open in IMG/M
3300021181\|Ga0210388_10765822	Not Available	838	Open in IMG/M
3300021401\|Ga0210393_11404408	Not Available	558	Open in IMG/M
3300021402\|Ga0210385_10055085	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2667	Open in IMG/M
3300021402\|Ga0210385_10101011	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	2012	Open in IMG/M
3300021402\|Ga0210385_10257248	Not Available	1285	Open in IMG/M
3300021403\|Ga0210397_10770760	Not Available	742	Open in IMG/M
3300021405\|Ga0210387_11395920	Not Available	603	Open in IMG/M
3300021406\|Ga0210386_10669864	Not Available	895	Open in IMG/M
3300021433\|Ga0210391_10185538	All Organisms → cellular organisms → Bacteria	1637	Open in IMG/M
3300021475\|Ga0210392_10764698	Not Available	721	Open in IMG/M
3300021475\|Ga0210392_10934439	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	649	Open in IMG/M
3300021559\|Ga0210409_10169002	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2000	Open in IMG/M
3300021560\|Ga0126371_10282200	Not Available	1783	Open in IMG/M
3300022840\|Ga0224549_1010084	Not Available	1382	Open in IMG/M
3300023056\|Ga0233357_1018468	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	816	Open in IMG/M
3300023101\|Ga0224557_1000652	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	37549	Open in IMG/M
3300024288\|Ga0179589_10335547	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	685	Open in IMG/M
3300025898\|Ga0207692_10017167	Not Available	3222	Open in IMG/M
3300025898\|Ga0207692_10534201	Not Available	748	Open in IMG/M
3300026555\|Ga0179593_1047531	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2894	Open in IMG/M
3300027164\|Ga0208994_1015659	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1046	Open in IMG/M
3300027171\|Ga0207947_1001957	Not Available	1229	Open in IMG/M
3300027496\|Ga0208987_1001607	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3497	Open in IMG/M
3300027879\|Ga0209169_10014417	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4341	Open in IMG/M
3300027879\|Ga0209169_10666562	Not Available	541	Open in IMG/M
3300027884\|Ga0209275_10061209	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1840	Open in IMG/M
3300027889\|Ga0209380_10246110	Not Available	1050	Open in IMG/M
3300027895\|Ga0209624_10409100	Not Available	904	Open in IMG/M
3300027908\|Ga0209006_10221248	All Organisms → cellular organisms → Bacteria	1637	Open in IMG/M
3300027968\|Ga0209061_1038302	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2127	Open in IMG/M
3300028047\|Ga0209526_10002148	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	13279	Open in IMG/M
3300028047\|Ga0209526_10035997	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3486	Open in IMG/M
3300028742\|Ga0302220_10087487	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1239	Open in IMG/M
3300028742\|Ga0302220_10181226	Not Available	792	Open in IMG/M
3300029910\|Ga0311369_11042651	All Organisms → cellular organisms → Bacteria → Terrabacteria group	643	Open in IMG/M
3300029943\|Ga0311340_11045995	Not Available	667	Open in IMG/M
3300029951\|Ga0311371_11238498	Not Available	858	Open in IMG/M
3300030490\|Ga0302184_10142493	All Organisms → cellular organisms → Bacteria	1046	Open in IMG/M
3300030520\|Ga0311372_10011081	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	19816	Open in IMG/M
3300031236\|Ga0302324_101013128	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1127	Open in IMG/M
3300031708\|Ga0310686_104006493	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7782	Open in IMG/M
3300031708\|Ga0310686_109119860	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6534	Open in IMG/M
3300031708\|Ga0310686_109591516	Not Available	956	Open in IMG/M
3300031708\|Ga0310686_113625899	Not Available	684	Open in IMG/M
3300031708\|Ga0310686_115842859	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	8519	Open in IMG/M
3300031715\|Ga0307476_10121809	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1858	Open in IMG/M
3300031823\|Ga0307478_10797975	Not Available	790	Open in IMG/M
3300032770\|Ga0335085_10011858	All Organisms → cellular organisms → Bacteria	12880	Open in IMG/M
3300032829\|Ga0335070_11593002	Not Available	594	Open in IMG/M
3300032892\|Ga0335081_10062847	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5739	Open in IMG/M
3300032895\|Ga0335074_10398229	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1496	Open in IMG/M
3300032896\|Ga0335075_10919439	Not Available	798	Open in IMG/M
3300033818\|Ga0334804_001025	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	16547	Open in IMG/M
3300033887\|Ga0334790_070490	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1219	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.11%
Host-Associated	Host-Associated	0.89%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	92.92%
Aquatic	Environmental → Aquatic	6.19%
Plants	Host-Associated → Plants	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	82.30%
Peat	Environmental → Terrestrial → Peat	10.62%
Freshwater	Environmental → Aquatic → Freshwater	6.19%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	38.94%
Loam	Environmental → Terrestrial → Soil → Loam	34.51%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	10.62%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.85%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	6.19%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.89%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	25.66%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.35%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	15.93%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	10.62%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.96%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.08%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	4.42%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.65%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.77%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.77%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.16%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	14.16%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	11.50%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	7.08%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.19%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	6.19%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.42%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.42%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	3.54%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	2.65%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.65%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.77%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.77%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.77%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	1.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.77%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.89%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.89%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.89%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005524	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen10_05102014_R1	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009623	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10	Environmental	Open in IMG/M
3300009638	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_10	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010867	Boreal forest soil eukaryotic communities from Alaska, USA - C3-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010876	Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014492	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018035	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022840	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 1-5	Environmental	Open in IMG/M
3300023056	Soil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-SFM-MS2	Environmental	Open in IMG/M
3300023101	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 10-14	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300027164	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027171	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF039 (SPAdes)	Environmental	Open in IMG/M
3300027496	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027968	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen10_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028742	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_3	Environmental	Open in IMG/M
3300029910	III_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030490	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_3	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300033818	Peat soil microbial communities from Stordalen Mire, Sweden - 713 S-3-M	Environmental	Open in IMG/M
3300033887	Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-1-X1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12053J15887_101706211	3300001661	Forest Soil	MTGMLVLACFVTGFIVAWLLRTGYVMAQISWAQEQMARKVRYWQGEAIHARSEAENLLRQLEVSRGRPAEPTDWPGSDADWRKLDMN*
JGIcombinedJ26739_1000101816	3300002245	Forest Soil	MMGVLALACFVTGFIVGWLLRTIFVMAQISWSQERMQRKVRYWQGEAIYARAVAEQLIRQLTASTGREAEPPDWPAAGIG*
JGIcombinedJ26739_1001346293	3300002245	Forest Soil	MVVPLLPAERAMTGMLALACFVTGFIVAWLLRTGYVMAQISWAQEQTQRKVRYWQGEAIHARSVAESVLRQLAASTGRSAEPTDWPGTDADWPGTDADWRKPGVH*
JGIcombinedJ26739_1003838813	3300002245	Forest Soil	ADRESPAERTMTDILTLGCFVAGFIVAWLLRTGYVMAKLSWAQEQMEHKVRYWQGEALHARAVADHLLRQLEAGTGQPSGLADRPVMDTDWHRPDAN*
JGIcombinedJ26739_1005718693	3300002245	Forest Soil	MIGVLALACFVTGFIAAWVLRTGYVMTQISWAQERMERKVRYWQGEAVYARSVAEPALQQLAAYSAPEPTDWHQPAMGQNQQKG*
JGIcombinedJ26739_1011550102	3300002245	Forest Soil	ERAMTGMLALACFVTGFLVAWLLRTGYVMAQISWAQERTQRKVRYWQGEAIHARSVAENVLRQLEAGTGRPAEPADWPGPDADWRKPGVH*
C688J35102_1208832152	3300002568	Soil	VTGMLALACFVTGFIVAWLARTGYVVAQISWANKHMEHKVRYWQSEAMYARGVAGDALRHLAAITGEAPEPPDWLGPDADGRWPVSN*
JGIcombinedJ51221_104162851	3300003505	Forest Soil	IGLLALACFMTGFITAWLLRTGFVMTQVSWAQERMERKVRYWQGEAIHARAVAEPALRQLAVHAGRDPEPTDWPDPGTDWRSPDMSS*
Ga0062387_1008177161	3300004091	Bog Forest Soil	MIGALASACFMTGFIVAWLLRTGYVAAQVSWAQEQMERKVRYWQGEAVHARAVAEHLLRQLEALTGRPAEPA
Ga0070709_110120312	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	VTGIVALACFATGFVTAWLTRTGFAMTQLSWTQERMERKVRYWKGEALYARTVAGDALRQLADITGRVLESPDWPELEAEGQQPGGN*
Ga0070714_1002806673	3300005435	Agricultural Soil	VTGVLALACFVTGFIVAWLLRTGYVMAQTSWATEQMEHKVRYWQSEAIYARAVAGDALCQLAAITGQAPEPADWPGPDLERHRPSSS*
Ga0070714_1011558232	3300005435	Agricultural Soil	MTSVLALGCFVTGFAAAWILRTAFKMAEISWWQERMQRKVRYWQGEAIHARAVAEHALRQLAAETGRDSEPTDWPGPDTDWRNPDMN*
Ga0070713_1019780961	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MFPGLHEAGAVIGTLALACFVTGFIVAWLLRTGYVMAQTSWAKEQMEHKVRYWQSEAIYARAVAGDALCQLAAITGQAPEPADWPGPDLE
Ga0070710_103699401	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MLPGLHEAGAVTGILALACFVTGFIVAWLLRTGYVMAQASWAREQMEHKVRYWQSEAIYARAVAGDALCQLAAITGQAPEPADWPGPDLERHRPSSS*
Ga0070711_1009611341	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	VIGTLALACFVTGFIVAWLLRTGYVMAQTSWAKEQMEHKVRYWQSEAIYARAVAGDALCQLAAITGQAPEPADWPGPDLERHRPSSS*
Ga0070698_1006798212	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MTGILALGCFVTGFIAAWLLRTGYVMTQISWAQQQMERKVRYWQGEAMHARGVAEHLLRQLEASTGRPPEPTDWPGPDTDWRRPDMN*
Ga0070737_100274492	3300005524	Surface Soil	MTGVLALGCLLAGFIVGWLLRTIYTLAHMSWSQEQMQRKVRYWQGETIRAREIAEQLMRQLAATTGHKPEPPDWPTLDPN*
Ga0070741_109361492	3300005529	Surface Soil	MADRESPAERTMTDMLALGCFAVGFIVAWLQRTGYVVAKISWAQEQMEHNVRYWQAEALHARAVADHLLRQLEADTGQPSGLPGRPDLDVDWRRPDAN*
Ga0070761_104468252	3300005591	Soil	MIGLLALACFMTGFITAWLLRTGFVMTQVSWAQERMERKVRYWQGEAIHARAVAEPALRQLAVYAGRDPEPTDWPDPGTDWRSPDMSS*
Ga0070761_107897581	3300005591	Soil	MIGILALACFLMGFMAAWLLRTGYVMTQISWAQQQMERKVRYWQGEAMHARAVAEHLLRQLEASTGRPPEPTDWPGPDTDWPRPDVN*
Ga0070762_102845111	3300005602	Soil	MIGVLTLGCFMTGFIVAWLLRTGYVAAQVSWAQEQMERKVRYWQSEAVHARAVAEHLLRQLEALTGRPAEPADWPGPDTDWAGPDFN*
Ga0070762_106189682	3300005602	Soil	MIGILALGCFVTGFIAAWLTRTGWAMTQISWAQEQMERKVRYWQGEAIHARTVAEQALRQLAASTGREPEPPDWPGADIY*
Ga0070763_109910151	3300005610	Soil	MIGALALACFMTGFIVAWLLRTGYVAAQVSWAQEQMERKVRYWQAEAVHARAVAEDLLRQLEAFTGRPGEPGDWPGPDTDWSGPNFN*
Ga0070764_105303992	3300005712	Soil	MIGVLTLGCFMTGFIVAWLLRTGYVAAQVSWAQEQMERKVRYWQSEAVHARAVAEHLLRQLEALTGRPAEPPDWPGPDTDWAGPDFN*
Ga0070766_108462931	3300005921	Soil	MIGLLALACFMTGFITAWLLRTGFVMTQVSWAQERMERKVRYWQGEAIHARAVAEPALRQLAVYAGRDPEPTDWPDPGTDWRSPDMS
Ga0070765_1002639124	3300006176	Soil	MTGMLALGCFVTGFVTAWLLRTGFVMTQISWAQEQMERKVRYWQGEAIHARAVAEPALRQLAVYAGRDPEPTDWPDPGTDWRSPDMSS*
Ga0070765_1012649901	3300006176	Soil	GILALGCFVIGFIAAWLLRTGYVMTQISWAQQQMERKVRYWQGEAMHARAVAEHLLRQLEASTGRPPEPTDWPDPETDWHRPDMN*
Ga0079221_103104753	3300006804	Agricultural Soil	GILALACFVTGFIVAWLLRTGYVMAQASWAKEQMEHKVRYWQSEAIYARAVAGDALCQLAAITGQAPEPADWPGPDLERHRPQ*
Ga0079220_119385241	3300006806	Agricultural Soil	TRVSRRPPQARAMTGILALACFVTGFIVAWLLRTGYVMAQMSWAKEQMEHKVRYWQSEAIYARAVAGDALCQLAAITGQAPEPADWPGPDLERHRPQ*
Ga0079219_101781061	3300006954	Agricultural Soil	ILALACFVTGFIVAWLLRTGYVLAQTSWAREQMEQKVRYWQSEAVYARIIAGEARCQLVAITGQAPEPADRPGPEAGRRRPDSN*
Ga0116133_10358151	3300009623	Peatland	VTGILALACFMTGSVVAWLLRTGYVTTQLSRVQEQMEHKVRYWQSEAIYARTQAEDAFYQLLAITGRAPGPAACPGPEVGWARPKAGWQRPETD*
Ga0116113_11184491	3300009638	Peatland	MTGMLALGCFVTGFVAAWMLRTGFVMTQISWAQEQMERKVRYWQGEAIHARFVAEQALRQLAAGTGRDPEPTDWPHPGAGPGKPDMN*
Ga0074044_100431034	3300010343	Bog Forest Soil	MIGILAMGCFVTGFFTAWLLRTGYVMTQISWAQQQMERKVRYWQGEAMHARAVAENLLRQLEATTGRPPEPTDWPGPDTDWRRPDMN*
Ga0136449_1014408902	3300010379	Peatlands Soil	MIGILALGCFVTGFFVAWLLRTGYVMTQISWAQQQMERKVRYWQGEAIHARAVAEHLLTQLEASTGRPPEPTDWPGPDTDWRMN*
Ga0126347_15678251	3300010867	Boreal Forest Soil	VIGILALACFATGFIVAWIARTGYVMTQISWTNKHMEHKVRYWQGEAMYARDVAGDALRQLAALTGEAPEPPNWPGPDADGRRP*
Ga0126361_100633912	3300010876	Boreal Forest Soil	MTGILALACFMTGFIVAWLLRTGYVTAQISWTQQQMERKVRYWQGEAIHARAVAEHLLRQLEAMTGRPAEPTDWPGSETDWPRPDID*
Ga0126361_101416521	3300010876	Boreal Forest Soil	MTGMLALACFVTGFLVAWLLRTGYVMAQISWAQEQTQRKVRYWQGEAIHARSVAESVLRQLEASTGRSAEPTDWPGADADWSGFDADWRKPGVH*
Ga0126361_112508831	3300010876	Boreal Forest Soil	MTGILALGCFVTGFMTAWLLRTGFVMTQISWAQEQMERKVRYWQGEAIHARDVAEQALRRLAAGTGRDPEPTDWPGPDTDWRKPDMN*
Ga0126350_104038371	3300010880	Boreal Forest Soil	MFPGLPKAGAVTGILALACFMTGFIVAWLLRTGYVMTQLSWAKEQMERKVRYWQSEAIYARTVAGDALCQLAAITGQAPDPADWPGSDP
Ga0126350_120865231	3300010880	Boreal Forest Soil	AWLLRTGYVMAQISWAQEQTQRKVRYWQGEAIHARSVAESVLRQLEASTGRSAEPTDWPGADADWPGLDADWRKPGVH*
Ga0126350_122954611	3300010880	Boreal Forest Soil	MTGILALACFMTGFIVAWLLRTGYVAAQVSWAQEQMERKVRYWQAEAVHARAVAEDLLRQLEAFTGRPAEPGDWPGPDTDWSGPDFN*
Ga0150983_101039041	3300011120	Forest Soil	VIGALALACFMTGFIVAWLLRTGWVAAQVSWAQEQMERKVRYWQAEAVHARAVAEHLLRQLEASTGRPAEPTDWPGPDTDWRDRT*
Ga0150983_139345783	3300011120	Forest Soil	MVVPLLPAERAMTGMLALACFVTGFIVAWLLRTGYVMAQISWAQEQTQRKVRYWQSEAIHARSVADSVLRQLEASTGRSAEPTDWPGADADWPGTDADWRKPGVH*
Ga0137389_117413081	3300012096	Vadose Zone Soil	MTGMLALACFVTGFIVAWLLRTGYVMAQISWSQEQTQRKVRYWQSEAIHARSVAESVLRQLEASTGRSAEPTDWPGADADWPSTDADWRKPGVH*
Ga0137397_112924021	3300012685	Vadose Zone Soil	MVVPLLPAERAMTGMLALACFVTGFIVAWLLRTGYVMAQISWAQEQTQRKVRYWQGEAIHARSVAESVLRQLEASTGRSAEPTDWPGADADWRKPGVH*
Ga0137416_105954083	3300012927	Vadose Zone Soil	MVVPLLPAERAMTGMLALACFVTGFIVAWLLRTGYVMAQISWAQEQTQRKVRYWQGEAIHARSVAESVLRQLEASTGRSAEPTDWPGADADWPSTDADWRKPGVH*
Ga0181532_100164563	3300014164	Bog	MTGVLALVCFVTGLIVGWLLRVIVVMAQISWSQERMQRKVRYWQGEAIHARVIAEQLTRQLAASRGREPEPPDWPAAGDPVAEE*
Ga0182013_1000172620	3300014492	Bog	MTGILALGCFVTGFMTAWLLRTGFVMTQISWAQEQMERKVRYWQGEAIHARAVAEQALRQLAAGPGRGPEPTDWPGPDTDWRKPDMN*
Ga0182030_100441771	3300014838	Bog	MTGILALGCFVTGFMTAWLLRTGFVMTQISWAQEQMERKVRYWQGEAIHARAVAEQALRQLAAGPGRGPEPTDWPGPDTDW
Ga0137412_100539221	3300015242	Vadose Zone Soil	MVVPLLPAERAMTGMLALACFVTGFIVAWLLRTGYVMAQISWSQEQTQRKVRYWQSEAIHARSVAESVLRQLEASTGRAAEPTDWPGADADWLGA
Ga0187879_100606551	3300017946	Peatland	VTGILALACFMTGSVVAWLLRTGYVTTQLSRVQEQMEHKVRYWQSEAIYARTEAEDAFYQLLAITGRAPGPAACPGPEVGWARPKAGWQRPETD
Ga0187779_107028251	3300017959	Tropical Peatland	MTEVLAIGCFVIGFVVAWLLRTGYVMTQVSWAQEQMERKVRYWQGEAIHARAVAETLLRQLSAITGRPPEPTDWPGPNTDLGRPDMDQDG
Ga0187780_104211122	3300017973	Tropical Peatland	MTEVLAIGCFVIGFIVAWLLRTGYVMTQISWTQEQMERKVRYWQGEAIHARAVAETLLRQLSAITGRPPEPTDWPGPNTDLGRPDMDQDG
Ga0187863_101992601	3300018034	Peatland	MTGMLALGCFVTGFVAAWMLRTGFVMTQISWAQEQMERKVRYWQGEAIHARFVAEQALRQLAAGTGRDPEPTDWPHPGAGPGKPDMN
Ga0187875_104264192	3300018035	Peatland	VTGILALACFMTGSVVAWLLRTGYVTTQLSRVQEQMEHKVRYWQSEAIYARTQAEDAFYQLLAITGRAPGPAACPGPEVGWARPKAGWQRPETD
Ga0210395_101922894	3300020582	Soil	MTGMLALACFVTGFIVAWLLRTGYVMAQISWAQEQTQRKVRYWQSEAIHARSVADSVLRQLEASTGRSAEPTDWPGADADWPGTDADWRKPGVH
Ga0210404_100961671	3300021088	Soil	MTGMLALACFVTGFIVAWLLRTGYVMAQISWAQEQTQRKVRYWQSEAIHARSVADSVLRQLEASTGRSAEPTDWPGADADWRKPGVH
Ga0210388_102209182	3300021181	Soil	MIGLLALACFMTGFITAWLLRTGFVMTQVSWAQERMERKVRYWQGEAIHARAVAEPALRQLAVYAGRDPEPTDWPDPGTDWRSPDMSS
Ga0210388_107658223	3300021181	Soil	MIGMLALACFVTGFIVAWLLRTGYVMTQITWAQEHMERKVRYWQCEAIHARSVAESLLRQLEADTGRPAEPTDWPGPDTAWRKPGVR
Ga0210393_114044082	3300021401	Soil	RRFSTDVPRLPAERAMTGMLALACFVTGFLVAWLLRTGYVMAQISWAQERTQRKVRYWQGEAIHARSVAENVLRQLEASTGRPAEPADWPGPDADWRKPGVH
Ga0210385_100550851	3300021402	Soil	MTGMLALACLATGFIVAWLLRTGYVMAQISWAQQQMERKVRYWQGEAIHARAVAEHLLRELEALTGRPAEPTDWPESGTDWSNPDIS
Ga0210385_101010113	3300021402	Soil	MIGMLALACFVTGFIVAWLLRTGYVMTQITWAQEHMERKVRYWQCEAIHARSVAENLLRQLEADTGRPAEPTDWPGPDTAWRKPGVR
Ga0210385_102572482	3300021402	Soil	MIGMLALACFVTGFIVAWLLRTGYVMAQITWVQKQMERKVRYWQGEAIHARSVAEHLLRELEASTGRPAEPTDWPGPDTDWRKPDMN
Ga0210397_107707602	3300021403	Soil	MIGMLALACFVTGFIVAWLLRTGYVMAQINWVQEQMERKVRYWQGEAIHARSIAEHLLRELEASTGRPAEPTDWPGPDTDWRKPDMN
Ga0210387_113959201	3300021405	Soil	MIGMLALACFVTGFIVAWLLRTGYVMAQISWAQERTQRKVRYWQGEAIHARSVAEHLLRELEASTGRPAEPTDWPGPD
Ga0210386_106698641	3300021406	Soil	MIGALALACFMTGFIVAWLLRTGYVAAQVSWAQEQMERKVRYWQAEAVHARAVAEHLLRQLEALTGRPAEPGDWPGPDTDWSRPDFN
Ga0210391_101855381	3300021433	Soil	MIGMLALACFVTGFIVAWLLRTGYVAAQVSWAQEQMERKVRYWQAEAVHARAVAEDLLRQLEAFTGRPAEPGDWPGPDTDWSGPNFN
Ga0210392_107646982	3300021475	Soil	MTGMLALACFVTGFLVAWLLRTGYVMAQISWAQERTQRKVRYWQGEAIHARSVAENVLRQLEASTGRPAEPADWPGPDTGWRKPGVR
Ga0210392_109344392	3300021475	Soil	MADRESPVERAVTDILTLGSFVAGFVVAWLLRTGYVMAKLSWAQEQMEYKVRYWQGEALHARAVADRLLCQLEVSTGNPSGPADWPDMDSDWHGPDSNHHS
Ga0210409_101690022	3300021559	Soil	MTGMLALACFVTGFIVAWLLRTGYVMAQISWAQEQTQRKVRYWQSEAIHARSVADSVLRQLEASTGRSAEPTDWPGADAAWPGADADWRKPGVH
Ga0126371_102822004	3300021560	Tropical Forest Soil	VIGTLALACFVTGFIVAWLLRTGYVMAQTSWAQEQMEHKVRYWQSEAIYARAVAGDALCQLAAITGQAPEPADWPGPDLERHRPSSS
Ga0224549_10100842	3300022840	Soil	MIGLLALACFVTGFITAWLLRTGFVMTQVSWSQERMERKVRYWQGEAIHARAVAEPALRQLAVYAGRDPEPTDWPHPGTDWRSPDMSS
Ga0233357_10184683	3300023056	Soil	CFVTGFIVAWLLRTGYVMAQISWAQEQTQRKVRYWQGEAIHARSVAESVLRQLEASTGRSAEPTDWPGADADWPRTDADWRKPGVH
Ga0224557_100065226	3300023101	Soil	MTGILALGCFVTGFMTAWLLRTGFVMTQISWAQEQMERKVRYWQGEAIHARAVAEQALRQLAAGPGRGPEPTDWPGPDTDWRKPDMN
Ga0179589_103355473	3300024288	Vadose Zone Soil	CFVTGFIVAWLLRTGYVMAQISWAQEQTQRKVRYWQGEAIHARSVAESVLRQLEASTGRSAEPTDWPGADADWLGADSDWRKPGVH
Ga0207692_100171672	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	VTGVLALACFVTGFIVAWLLRTGYVMAQTSWATEQMEHKVRYWQSEAIYARAVAGDALCQLTAITGQAPEPADWPGPDLERHRPSSS
Ga0207692_105342011	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	VTGIVALACFATGFVTAWLTRTGFAMTQLSWTQERMERKVRYWKGEALYARTVAGDALRQLADITGRVLESPDWPELEAEGQQPGGN
Ga0207702_121012851	3300026078	Corn Rhizosphere	MFPGLHEAGAVIGILALACFVTGFIVAWLLRTGYVMAQASWAKEQMEHKVRYWQSEAIYARAVAGDALCQLAAITGQAPEPADWPGPDLERHRPSSS
Ga0179593_10475312	3300026555	Vadose Zone Soil	MTGMLALACFVTGFIVAWLLRTGYVMAQISWSQEQTQRKVRYWQSEAIHARSVAESVLRQLEASTGRSAEPTDWPGADADWPGADADWRKPGVH
Ga0208994_10156593	3300027164	Forest Soil	MTGMLVLACFVTGFIVAWLLRTGYVMAQISWAQEQMARKVRYWQGEAIHARSEAENLLRQLEVSRGRPAEPTDWPGSDADWRKLDMN
Ga0207947_10019571	3300027171	Forest Soil	MIGALALACFMTGFIVAWLLRTGYVAAQVSWAQEQMERKVRYWQAEAVHARAVAEDLLRQLEAFTGRPAEPGDWPGPDTDWSGPNFN
Ga0208987_10016073	3300027496	Forest Soil	MTGMLALACFVTGFIVAWLVRTGYVMAQISWAQERTQRKVRYWQGEAIHARSVAENVLRQFEASTGRPAEPADWPGPDTDWRKPGVH
Ga0209169_100144177	3300027879	Soil	ALACFMTGFITAWLLRTGFVMTQVSWAQERMERKVRYWQGEAIHARAVAEPALRQLAVYAGRDPEPTDWPDPGTDWRSPDMSS
Ga0209169_106665621	3300027879	Soil	VIGALALACFMTGFIVAWLLRTGYVAAQVSWAQEQMERKVRYWQSEAVHARAVAEHLLRQLEALTGRPAEPPDWPGPDTDWAGPD
Ga0209275_100612092	3300027884	Soil	MIGVLTLGCFMTGFIVAWLLRTGYVAAQVSWAQEQMERKVRYWQSEAVHARAVAEHLLRQLEALTGRPAEPADWPGPDTDWAGPDFN
Ga0209380_102461101	3300027889	Soil	MIGLLALACFMTGFITAWLLRTGFVMTQVSWAQERMERKVRYWQGEAIHARAVAEPALRQLAVYAGRDPEPTDWPDPGTDW
Ga0209624_104091001	3300027895	Forest Soil	MIGVLALGCFVTGFITAWVLRTGYVMTQISWAQERMEHKVGYWQGEAIHARSVAENVLRQLEAGTGRPAEPADWPGPDADWRKPGVH
Ga0209006_102212483	3300027908	Forest Soil	MIGVLALACFVTGFIAAWVLRTGYVMTQISWAQERMERKVRYWQGEAVYARSVAEPALQQLAAYSAPEPTGWHQPAMGQNQQKG
Ga0209061_10383022	3300027968	Surface Soil	MTGVLALGCLLAGFIVGWLLRTIYTLAHMSWSQEQMQRKVRYWQGETIRAREIAEQLMRQLAATTGHKPEPPDWPTLDPN
Ga0209526_100021486	3300028047	Forest Soil	MMGVLALACFVTGFIVGWLLRTIFVMAQISWSQERMQRKVRYWQGEAIYARAVAEQLIRQLTASTGREAEPPDWPAAGIG
Ga0209526_100359973	3300028047	Forest Soil	MVVPLLPAERAMTGMLALACFVTGFIVAWLLRTGYVMAQISWAQEQTQRKVRYWQGEAIHARSVAESVLRQLAASTGRSAEPTDWPGTDADWPGTDADWRKPGVH
Ga0302220_100874872	3300028742	Palsa	MIGVLALSCFVTGFIAAWMLRTGFVMTQISWAQERMERKVRYWQGEAIHARAVAEPALRQLAAHTGRDLEPASPGEN
Ga0302220_101812263	3300028742	Palsa	TGFITAWLLRTGFVMTQVSWSQERMERKVRYWQGEAIHARAVAEPALRQLAVYAGRDPEPTDWPHPGTDWRSPDMSS
Ga0311369_110426512	3300029910	Palsa	MIGVLALSCFVTGFIAAWMLRTGFVMTQISWAQERMERKVRYWQGEAIHARAVAEPALRQLAVYAGRDPEPTDWPHPGTDWRSPD
Ga0311340_110459951	3300029943	Palsa	ACFVTGFITAWMLRTGFVMTQISWAQERMERKVRYWQGEAVHARAVAEPALRQLAAHAGRAPEPTDWLPPDTNWHRPDTK
Ga0311371_112384983	3300029951	Palsa	LACLATGFIIAWLLRTGYVMAQISWAQEQMERKVRYWQGEAVHARVVAEDLLRQLEAATGRPAEPTDWPGPDTDWRRPDST
Ga0302184_101424932	3300030490	Palsa	MIGVLALACLVTGFITAWVLRTGYVMTQISWAQERMERKVRYWQGEAVYARSVAEPALQQLAAYTAPEPTDWRQPAMGQNQQKG
Ga0311372_100110816	3300030520	Palsa	MTGILALACLATGFIIAWLLRTGYVMAQISWAQEQMERKVRYWQGEAVHARVVAEDLLRQLEAATGRPAEPTDWPGPDTDWRRPDST
Ga0302324_1010131282	3300031236	Palsa	MIGLLALACFVTGFITAWMLRTGFVMTQISWAQERMERKVRYWQGEAVHARAVAEPALRQLAAHAGRAPEPTDWLPPDTNWHRPDTK
Ga0310686_1040064933	3300031708	Soil	MIGILALGCFVTGFVAAWLTRTGWAMTQISWAQEQMERKVRYWQGEAVHARTVAEQLLRQLETSTGRPCEPTDWPGPDADWRRPEMNLRGGRT
Ga0310686_1091198605	3300031708	Soil	MTGILALGCFVIGFIAAWLLRTGYVMTQISWAQQQMERKVRYWQGEAMHARAVAEHLLRQLEASTGRPPEPTDWPDPDTDWRRPDMN
Ga0310686_1095915161	3300031708	Soil	MTGVLALACFATGFIVAWLLRTSFVLAQISWAQEQMERKVRYWQGEAIHARTVAEQSLRQLAASTGREPEPPDWPGADIY
Ga0310686_1136258991	3300031708	Soil	MTGVLALACFATGFIVAWLLRTSFVLAQISWTQEQMERKVRYWQGEAIHARAVAEQSLRQLAAGTGREPEPPDWPGADIY
Ga0310686_1158428597	3300031708	Soil	MIGLLALACFVTGFITAWLLRTGFVMTQVSWAQERMERKVRYWQGEAIHARAVAEPALRQLAVYAGRDPEPTDWPDPGTDWRSPDMSS
Ga0307476_101218092	3300031715	Hardwood Forest Soil	MTGMLALACFVTGFIVAWLLRTGYVMAQISWAQEQTQRKVRYWQSEAIHARSVADSVLRQLEASTGRSAEPTDWPGADAAWPGTDADWRKPGVH
Ga0307478_107979751	3300031823	Hardwood Forest Soil	MIGALALACFMTGFIVAWLLRTGYVAAQVSWAQEQMERKVRYWQAEAVHARAVAEHLLRQLEALTGRPAEPADWPGPDTDWTGPEFN
Ga0335085_1001185811	3300032770	Soil	VTGILALACFVTGFIVAWLLRTGYVMTQTSWAMEQMEHKVRYWQSEAIYARAVAGDALCQLAAITGQAPEPADWPGPDLERHRPSSS
Ga0335070_115930021	3300032829	Soil	VTGILALACFVTGFVVAWLLRTGYVLAQTSWVKEQMEQKVRYWQSEAIYARIIAGEARCQLAAITGQAPEPADWAGPEAGWHRPDST
Ga0335081_100628475	3300032892	Soil	MIGMLALGCFLIGFIAAWLLRTGFVMTQISWAQEQMERKVRYWQGEAIHARAVAEHALRQLAAETGRDPEPTDWPGPDTNWRNPDMN
Ga0335074_103982291	3300032895	Soil	MTGMLALACFMTGFIVAWLLRTGYVAAQVSWVQEQMERKVRYWQAEAIHARAVVEHLLSQLETLTGRPAEPTDWPGPGTDWSRPDADWSGPDFN
Ga0335075_109194392	3300032896	Soil	MIGVLALGCFITGFIVAWLLRTGYVAAQVSWAQEQMERKVRYWQGEAVHARAVAEHLLRQLEALTGRPAEPADWPGPDTDRAGPGFN
Ga0334804_001025_7075_7359	3300033818	Soil	MTGILALGCFVTGFMTAWLLRTGFVMTQISWAQEQMERKVRYWQGEAIHARAVAEQALRQLAAGPGRGPEPTDWPGPDTDWPGPDTDWRKPDMN
Ga0334790_070490_905_1147	3300033887	Soil	MTGVLGLACFVTGFIAAWLLRTIFIMARISWSQERMQRKVRYWQGEAIHARAVAEQLIRQLAVSTGRESEPPDWPAAGIG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F082991

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences