Metagenome / Metatranscriptome Family F082977

Overview

Basic Information

• Family ID: F082977
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 113
• Average Sequence Length: 44 residues
• Representative Sequence: GRASGFDEKEKRANFAIYKDIDIQGQLEKALDAVMGKSNGQGAGK
• Number of Associated Samples: 98
• Number of Associated Scaffolds: 113

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 0.00 %
• % of genes near scaffold ends (potentially truncated): 20.35 %
• % of genes from short scaffolds (< 2000 bps): 19.47 %
• Associated GOLD sequencing projects: 95
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (79.646 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (10.620 % of family members)
• Environment Ontology (ENVO): Unclassified (30.088 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (58.407 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 23.29%
  β-sheet: 0.00%
  Coil/Unstructured: 76.71%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF00814	TsaD	82.30
PF12627	PolyA_pol_RNAbd	2.65
PF01425	Amidase	1.77
PF08547	CIA30	1.77
PF07007	LprI	0.88
PF13432	TPR_16	0.88
PF02927	CelD_N	0.88
PF00534	Glycos_transf_1	0.88
PF02686	Glu-tRNAGln	0.88

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG0533	tRNA A37 threonylcarbamoyltransferase TsaD	Translation, ribosomal structure and biogenesis [J]	82.30
COG1214	tRNA A37 threonylcarbamoyladenosine modification protein TsaB	Translation, ribosomal structure and biogenesis [J]	82.30
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	1.77
COG0721	Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit	Translation, ribosomal structure and biogenesis [J]	0.88
COG3755	Uncharacterized conserved protein YecT, DUF1311 family	Function unknown [S]	0.88

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.65 %
All Organisms	root	All Organisms	20.35 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.65 %
cellular organisms	root	All Organisms → cellular organisms	20.35 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.65 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	20.35 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.65 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	15.04 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.65 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	13.27 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.88 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.65 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.27 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.88 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.65 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.27 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.88 %

Level 8

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.65 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.27 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.88 %

Level 9

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.65 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.27 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.88 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300000567|JGI12270J11330_10232501	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	605
3300004091|Ga0062387_100578838	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	800
3300004635|Ga0062388_100268697	All Organisms → cellular organisms → Bacteria	1401
3300005591|Ga0070761_10955670	All Organisms → cellular organisms → Bacteria → Acidobacteria	543
3300006028|Ga0070717_10335590	All Organisms → cellular organisms → Bacteria	1349
3300009839|Ga0116223_10365439	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	853
3300012206|Ga0137380_11608951	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	534
3300012361|Ga0137360_11692613	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	538
3300017961|Ga0187778_10297993	All Organisms → cellular organisms → Bacteria	1043
3300018013|Ga0187873_1278492	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	616
3300018042|Ga0187871_10258312	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	967
3300018047|Ga0187859_10120966	All Organisms → cellular organisms → Bacteria	1380
3300018090|Ga0187770_10316405	All Organisms → cellular organisms → Bacteria	1216
3300021170|Ga0210400_10565518	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	938
3300027625|Ga0208044_1119435	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	753
3300027692|Ga0209530_1159550	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	630
3300028020|Ga0265351_1011865	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	731
3300028795|Ga0302227_10087173	All Organisms → cellular organisms → Bacteria	1319
3300030706|Ga0310039_10186953	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	822
3300031708|Ga0310686_101739722	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	518
3300031718|Ga0307474_11665447	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	500
3300031753|Ga0307477_10729574	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	661
3300032160|Ga0311301_10305242	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2543

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.23%
Host-Associated	Host-Associated	1.77%

Class

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	72.57%
Aquatic	Environmental → Aquatic	25.66%
Plants	Host-Associated → Plants	1.77%

Category

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	63.72%
Freshwater	Environmental → Aquatic → Freshwater	24.78%
Peat	Environmental → Terrestrial → Peat	7.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.77%
Sediment	Environmental → Aquatic → Sediment	0.89%
Cave	Environmental → Terrestrial → Cave	0.89%

Type

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	39.82%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	24.78%
Loam	Environmental → Terrestrial → Soil → Loam	12.39%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	11.50%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	7.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.77%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.89%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.89%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.35%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	16.81%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	15.93%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	9.73%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.73%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	7.96%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	5.31%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.65%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.65%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.77%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.89%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.89%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.89%

Habitat

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.62%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	8.85%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	7.96%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.08%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	7.08%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	6.19%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.19%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	5.31%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.31%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	4.42%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.54%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	3.54%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	2.65%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	2.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.65%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.65%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.77%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.89%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.89%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.89%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.89%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.89%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.89%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.89%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.89%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental
3300009641	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_150	Environmental
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental
3300016750	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)	Environmental
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental
3300017927	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4	Environmental
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental
3300018013	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_100	Environmental
3300018017	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40	Environmental
3300018022	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40	Environmental
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental
3300024225	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU5	Host-Associated
3300024227	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4	Host-Associated
3300025412	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10 (SPAdes)	Environmental
3300025434	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10 (SPAdes)	Environmental
3300025509	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 shallow-072012 (SPAdes)	Environmental
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental
3300026467	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-A	Environmental
3300026514	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-B	Environmental
3300027076	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF012 (SPAdes)	Environmental
3300027109	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF008 (SPAdes)	Environmental
3300027559	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O3 (SPAdes)	Environmental
3300027625	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG (SPAdes)	Environmental
3300027641	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG (SPAdes)	Environmental
3300027692	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1 (SPAdes)	Environmental
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental
3300028020	Soil microbial communities from Maridalen valley, Oslo, Norway - NSE4	Environmental
3300028748	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_2	Environmental
3300028795	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_1	Environmental
3300029911	III_Bog_N2 coassembly	Environmental
3300029945	I_Bog_N2 coassembly	Environmental
3300030399	II_Palsa_E2 coassembly	Environmental
3300030524	II_Palsa_N3 coassembly	Environmental
3300030687	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_1	Environmental
3300030688	II_Bog_N2 coassembly	Environmental
3300030706	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG (v2)	Environmental
3300030991	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)	Environmental
3300031261	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_1	Environmental
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental
3300033807	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_100_10	Environmental
3300034163	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_102325011	3300000567	Peatlands Soil	VPIIIVAGRASGFDESEGRANFTIYKDIDIEKQLTKALAALSRKRRRGHAAGK*
JGI12270J11330_102507011	3300000567	Peatlands Soil	SGFEESEKRADFAIYKDIDIEGQLAKALGAVLGNATQAHSAGK*
JGI12627J18819_104485772	3300001867	Forest Soil	IIVASRASGLDESEKRANFAIYKDVDIDEQLGKALDSVLGKAKAQAAGK*
Ga0062385_101114752	3300004080	Bog Forest Soil	DEKEKRANFAIYKDIDIQGQLQKALDAVMGEGLGQGAAK*
Ga0062384_1013126101	3300004082	Bog Forest Soil	VAGRASGFDEKENRANFAIYKDIDIEGQLEKGLEAVMGKTQVKGAGK*
Ga0062387_1005788381	3300004091	Bog Forest Soil	AKIPVIIVAGRASGFDENEKRANFAIYKDIDIEGQLAKALEALMGDKKVKSAGV*
Ga0062389_1001006841	3300004092	Bog Forest Soil	GRASGFDEKEKRANFAIYKDIDIQGQLQKALDAVMGEGLGQGAAK*
Ga0062388_1002686971	3300004635	Bog Forest Soil	TIPIIIVAGRASGFDEKEKRADFAIYKDIDIQGQLEKALDTVMGKNHRQGAGK*
Ga0062388_1027717661	3300004635	Bog Forest Soil	VAGRASGFDEKEKRANFAIYKDIDIQGQLEKALDAVMGKSFEQRTGK*
Ga0066679_105476891	3300005176	Soil	GRASGFDEKEKRANFAIYKDIDIQGQLEKALEAVMGKSRGHEAGK*
Ga0070713_1018213401	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	FEESEKRANFIIYKDIDIDAQLAKGLEAVSGKVSRAHASGT*
Ga0066682_101297503	3300005450	Soil	GSGFDTSEKRADFTIYKDIDIESQLQKGLEKVLGKASRKKSAGK*
Ga0070735_106648581	3300005534	Surface Soil	FDEKEKRANFAIYKDIDIQGQLEKALDAVMGRSNGHAAGK*
Ga0066707_101713852	3300005556	Soil	RADFAIYKDIDIESQLQKGLEKVLGKASRKKSAGK*
Ga0070761_109556702	3300005591	Soil	IPIIIVAGRASGFDEKEKRANFAIYKDIDIQAQLEKALDAVMGKSNGHGAGKK*
Ga0070717_103355901	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	PIIIVAGRASGFEESEKRANFIIYKDIDIDAQLAEGLKAVSGKVSRAHASGT*
Ga0075029_1008117472	3300006052	Watersheds	SEKRADFAIYKDIDIDVQLAGALDVVLSKASRAQAAGK*
Ga0070765_1006570232	3300006176	Soil	ASGFDEKEKRANFAIYKDIDKQAQLEKALDAVMGKSHGQGAGK*
Ga0099792_101807272	3300009143	Vadose Zone Soil	VIIVAGRASGFDEGERRADFAIYKDIDIETQLEKALDAVWKKDSRTQAAGK*
Ga0116120_12516851	3300009641	Peatland	EKRANFAIYKDIDIQSQLEKALDAVMGKSRSQGAGK*
Ga0126374_118985051	3300009792	Tropical Forest Soil	IIIVAGRSSGFDESEKRADFAIYKDIDIEGQLEKALSVVLGKTKQQSAGK*
Ga0116223_103654392	3300009839	Peatlands Soil	AKVPVIIVAGRASGFEESEKRADFAIYKDIDIEGQLAKALGAVLGNATQAHSAGK*
Ga0137393_101318521	3300011271	Vadose Zone Soil	EKRADFAIYKDIDIESQLEKGLEKVLGKASRKKSAGK*
Ga0137393_112432921	3300011271	Vadose Zone Soil	GRASGFDKSEKRANFAIYKDIEIEAQLAWALDAVLGKASRAHATGK*
Ga0137380_116089512	3300012206	Vadose Zone Soil	GIPIIIVAGRASGFDESEKRANFAIYKDIDIESQLGKALDAVLGKSSGAHAAGK*
Ga0137360_116926132	3300012361	Vadose Zone Soil	IPIIIVAARASGFDVKEKRANFAIYKDIDIQGQLEKALDAVMGKSSGQGAGK*
Ga0137416_110626961	3300012927	Vadose Zone Soil	DTSEKRADFAIYKDIDIESQLEKALEKVLGKASRKKSAGK*
Ga0137416_121999811	3300012927	Vadose Zone Soil	RADFAIHKDIDIESQLEKALEKILGKASRKKSAGK*
Ga0181531_102341662	3300014169	Bog	RANFAIYKDIDIQGQLEKALDAVMRKSHGQGAGK*
Ga0181531_102347162	3300014169	Bog	ENETRADFAIYKDIDIQGQLQKALDSVMGKSFGQGAGI*
Ga0182018_101679931	3300014489	Palsa	RASGFDEKEKRANFAIYKDIDIQGQLEKGLDAVMGKTYGRGAGK*
Ga0182024_123959532	3300014501	Permafrost	AGRASGFDEKEKRADFAIYKDIDIQGQLEKALDAVMGKSQKQGARK*
Ga0181525_100497554	3300014654	Bog	GRASGFDEKEKRANFAIYKDIDIQGQLEKALDAVMGKSNGQGAGK*
Ga0181505_102810251	3300016750	Peatland	GLDEQENRANFAIYKDIDIQSQLEKALDAVMGKEQGKGAGK
Ga0181505_107161141	3300016750	Peatland	GFDEKEKRASFAIYKDIDIQGQLDKALDAVMKKTREQGAGK
Ga0187802_101996801	3300017822	Freshwater Sediment	RASGFDESETRANFAIYKDVDIDAQLAKALDAVLGTARAQAAGE
Ga0187802_103201071	3300017822	Freshwater Sediment	DESETRANFAIYKDVDIDAQLAKALDAVLVTAKAQAAGE
Ga0187820_12876161	3300017924	Freshwater Sediment	ESETRANFAIYKDVDIDAQLAKALDAVLVTAKAQAAGE
Ga0187824_102375591	3300017927	Freshwater Sediment	KRANFAIYKDVDIDAQLGKALDSLQEKAARKHSAGK
Ga0187801_104150081	3300017933	Freshwater Sediment	VAARASGFHESEKRANFTIYKDIDIEEQLAKALKALRKVSRAQGAGK
Ga0187778_102979932	3300017961	Tropical Peatland	VPIIIVAARSSGFHESERRANFTIYKDIDIEEQLTKALAALSGKASRQANGK
Ga0187783_105148223	3300017970	Tropical Peatland	VASRASGFDETEKRANFAIYKDVDIDAQLGKALDQVLGKNARAQQAGK
Ga0187783_105846652	3300017970	Tropical Peatland	AGRASGFDEKEKRANFAIYKDIDIQGQLQKALDAVMGKGQGAGK
Ga0187781_102848502	3300017972	Tropical Peatland	SSGFDEAEKRANFTIYKDIDIEAQLGKALAALPGKANARAAGK
Ga0187804_102562232	3300018006	Freshwater Sediment	AETRANFVIHKDVDVEAQLANALDAVLGKATRATAAGK
Ga0187873_12784922	3300018013	Peatland	PIIIVAGRASGFDESEKRANFTIYKDIDIEEQLTKALAALSGKAGRGKGAGK
Ga0187872_104292832	3300018017	Peatland	EKRANFAIYKDIDIQDQLEKALDAVMGKSHGQGAGK
Ga0187864_100567943	3300018022	Peatland	DESEKRANFTIYKDIDIEEQLTKALAALSGKAGRGKGAGK
Ga0187883_107548942	3300018037	Peatland	GRASGFDEKENRANFAIYKDIDIQGQLEKALDTVMGKSFGQGAGSS
Ga0187871_102583121	3300018042	Peatland	IPIIIVAGRASGFDEKEKRANFAIYKDIDIQAQLEKALDAVMGKSNGHGAGKK
Ga0187871_106112841	3300018042	Peatland	DEKEKRANFAIYKDIDIQDQLEKALDAVMGKSHGQGAGK
Ga0187859_101209661	3300018047	Peatland	PIIIVAGRASGFDENEKRADFAIYKDIDIQCQLGKALDAVMGKGQGAGK
Ga0187772_109800371	3300018085	Tropical Peatland	IVAGRSSGSAESETRANFVIYKDIDIEGQLAKALTAVLGKANQSQSAGK
Ga0187769_108654492	3300018086	Tropical Peatland	IVAGRSSGFTESETRANFVIYKDIDIEAQLAKALAAVLGNANQSQSAGK
Ga0187769_109649821	3300018086	Tropical Peatland	SGFDEKEKRANFAIYKDIDIQGQLEKALDAVVGKSHGHVAGK
Ga0187770_103164051	3300018090	Tropical Peatland	AVPIIIVASRSSGFYESEKRANFTIYKDIDIEDQLTKALASLAGKARRHSAGK
Ga0210403_109639592	3300020580	Soil	IIVAGRASGFDEKEKRANFAIYKDIDIQGQLEKALDAVMGKGHAQGAEK
Ga0210401_114827632	3300020583	Soil	DETEKRADFAIYKDIDIQAQLEKALDAVMGKSNGHGAGKK
Ga0210400_105655181	3300021170	Soil	GVPIIIVAYKASGFDQAETRANYAIYKDIDIETQLAKALDAVLGKASQPQASGN
Ga0210385_101998202	3300021402	Soil	ASGFDETEKRANFAIYKDIDIEAQLGKALDVVLGKARAHGAGK
Ga0210383_112014002	3300021407	Soil	DEKETRVNFAIYKDIDIQGQLEKALDAVMGKSYGQGAGR
Ga0210394_108093462	3300021420	Soil	VAGRASGFDEKEKRANFAIYKDIDIQGQLEKALNAVMGKSNGTASRK
Ga0210391_101468303	3300021433	Soil	EKRANFAIYKDIDIQAQLEKALDAVMGKSNGRGAGK
Ga0210390_110327122	3300021474	Soil	DETEKRANFAIYKDVDIDAQLGKALDAIMGKTRRGRGAGK
Ga0187846_1000113519	3300021476	Biofilm	AGRASGFDETEKRADFAIYKDIDIEEQLAKALDAVMGKASRKQKAGA
Ga0210409_108470761	3300021559	Soil	IVAGRSSDFNESEKRADFAIYKDIDIEGQLAKALDAVLGEAGRAQSNGN
Ga0224572_10420721	3300024225	Rhizosphere	VAGRGSGFDENEKRADFAIYKDIDIQCQLGKALDAVLGKGRGQSAGK
Ga0228598_11184671	3300024227	Rhizosphere	IIVAGRASGFDEKEKRANFAIYKDIDIEGQLEKALEAVFGKVIQKGAGQ
Ga0208194_10067303	3300025412	Peatland	ETEKRANFAIYKDIDIEGQLEKALDVVFSRAIPKV
Ga0208690_10303121	3300025434	Peatland	RANFFIYKDIDIEAQLAKTLDELFGRASRGRGAGQ
Ga0208848_10934091	3300025509	Arctic Peat Soil	QAEKRANFAIYKDIDIDGQLAKALDAVMGKAAPAHAGK
Ga0207700_115248102	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	FEESEKRANFIIYKDIDIDAQLAKGLEAVSGKVSRAHASGT
Ga0257154_10655951	3300026467	Soil	GFDETEKRANFAIYKDIDIEAQLGKALDAVLGKASRAQAAGK
Ga0257168_11509991	3300026514	Soil	QKEKRSDFAIYKDIDIESQLEKALDAVLGNGYGQGAGK
Ga0208860_10067461	3300027076	Forest Soil	IIVASRTSGFDQSEKRANFAIYKDIDIEAQLGKALDAVSGKAGRGQAAGK
Ga0208603_10078701	3300027109	Forest Soil	EKEKRANFAIYKDIDIQGQLEKALDAVMGKSFEQRAGK
Ga0209222_11184291	3300027559	Forest Soil	ETEKRANFAIYKDIDIQGQLEKALDAVMGKSRAQGAGN
Ga0208044_11194352	3300027625	Peatlands Soil	VPVIIVAGRASGFEESEKRADFAIYKDIDIEGQLAKALGAVLGNATQAHSAGK
Ga0208827_10194201	3300027641	Peatlands Soil	GFEESEKRANFAIYKDIDIEEQLGKALDVVMGKAGGAQAGGR
Ga0209530_11595502	3300027692	Forest Soil	IPIIIVAGRASGFDEKEKRADFAIYKDIDIQAQLEKALDAVMGKSHGQGAGK
Ga0209139_101722471	3300027795	Bog Forest Soil	EKRADFAIHKDIDIESQLAKALDSVFGKAAHKGAGK
Ga0209590_101096584	3300027882	Vadose Zone Soil	KSEKRANFAIYKDIEIEAQLAWALDAVLGKASRAHATGK
Ga0209380_101411551	3300027889	Soil	AGRASGFDEKEKRANFAIYKDIDIQGQLEKALDAVMGKSFGRGAGK
Ga0209380_103044671	3300027889	Soil	GRAGAADQPEKRAQFSIRKDIDIETQLGKALDAMLGNSRGHAAGK
Ga0209624_103304362	3300027895	Forest Soil	RASGFDEKERRADFAIYKDIDIEGQLEKALEVVMGKSKGKGTGK
Ga0209415_106310863	3300027905	Peatlands Soil	DQSEKRANFAIYKDIDIEGQLGKALDAVMGKARAEAAGK
Ga0209415_106574941	3300027905	Peatlands Soil	EESEKRADFAIYKDIDIEGQLAKALGAVLGNATQAHSAGK
Ga0209006_103173431	3300027908	Forest Soil	AGGFHEKEKRGDFAIYKDIDIQSQLEKALEAVTGKRRGHAAGR
Ga0265351_10118652	3300028020	Soil	PIIILAGRGSGFAEQEKRADFAIYKDIDIQSQLEKALDAVVGKGQGQTEGR
Ga0302156_102154241	3300028748	Bog	SGFNETENRANFAIYKDIDIQGQLEKALDAVMSKGELK
Ga0302227_100871732	3300028795	Palsa	IPIIIVAGRASGFDEKEKRANFAIYKDIDIQCQLEKALDTVMGKRFGVGK
Ga0311361_102024334	3300029911	Bog	IVAGRSSGFNETENRANFAIYKDIDIQGQLEKALDAVMSKGELK
Ga0311330_100954353	3300029945	Bog	DAKETRANFAIYKDIDIQGQLEKALDAVTGTSERPAGK
Ga0311353_111170552	3300030399	Palsa	PIIIVAGRASGFDEKEKRADFAIYKDIDIEGQLEKALEAVHCKASKKSAGK
Ga0311357_115914472	3300030524	Palsa	GFDEKEKRANFAIYKDIDIQGQLEKALDAVMGKSYGQGAGK
Ga0302309_102866022	3300030687	Palsa	SGFGEKEKRSDFAIYKDIDIQSQLEKALDAIMGKSPGKAAAK
Ga0311345_108816311	3300030688	Bog	EKEKRANFAIYKDIDIQGQLEKALEKVMGRARGQVGAK
Ga0310039_101869531	3300030706	Peatlands Soil	IIIVAGRASGFDEKENRANFAIYKDIDIEGQLEKALEAVMGKTQLKGAGK
Ga0073994_115189722	3300030991	Soil	FDQTEKRATFAIYKDIDIEAQLAKALDVVLGKASQPQLSGD
Ga0302140_102493341	3300031261	Bog	GFDETEKRANFAIYKDIDIEGQLEKALDVVFSRAIPKV
Ga0310686_1017397221	3300031708	Soil	NIPIIIVAGRASGFDEKENRADFAIYKDIDIQAQLEKALDAVMGKGNGQGAEK
Ga0310686_1168029284	3300031708	Soil	IVAGRASGFDEKEKRADFAIYKDIAIQAQLEKALDAVMGKSHGRGAGK
Ga0307474_116654471	3300031718	Hardwood Forest Soil	AGIPIIIVAGRASGFDEQEKRANFAIYKDIDLEGQLEKALDEVMGKWPRTGK
Ga0307477_107295742	3300031753	Hardwood Forest Soil	IPIIIVAGRASGFDETEKRANFAIYKDIDIQDQLEKALDAVMGKGNGREAGK
Ga0307475_105841432	3300031754	Hardwood Forest Soil	IVAYKAGGFDQTEKRADFAIYKDINIEAQLAKALDALAGKAERHSAGK
Ga0307478_100262841	3300031823	Hardwood Forest Soil	IVAGRASGFDEKEKRADFAIYKDIDIQSQLEKALHAVTGKKPGPVAGK
Ga0307478_118231562	3300031823	Hardwood Forest Soil	SGYDESEKRADFTIYKDIELEAQLEKALKKVLGKLSRPQSTGK
Ga0307479_110319112	3300031962	Hardwood Forest Soil	ASGYDESEKRADFTIYKDIELEAQLEKALKKVLGKLSRPQSTGK
Ga0311301_103052421	3300032160	Peatlands Soil	TAKVPVIIVAGRASGFEESEKRADFAIYKDIDIEGQLAKALGAVLGNATQAHSAGK
Ga0311301_103138704	3300032160	Peatlands Soil	EKRANFAIYKDVDIDAQLSKALDAVLGKAGTQAAGK
Ga0335079_104622671	3300032783	Soil	RASGADDSEQRANFVIYKDVDIDAQLEKALDALLEKTARAHKTGK
Ga0314866_007089_1279_1401	3300033807	Peatland	FEEGEKRANFAIYKDVDIDAQLAKALDAVLGNAQAHSAGK
Ga0370515_0002566_3_110	3300034163	Untreated Peat Soil	ADFAIYKDIDIEGQLDKALDAVMRKSHGQGAGSKL