Metagenome / Metatranscriptome Family F082964

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F082964
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	40 residues
Representative Sequence	ARDFGSLRTSQFHLIESKLKPSGAEYTTLESFPFAAEA
Number of Associated Samples	95
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	97.35 %
% of genes from short scaffolds (< 2000 bps)	89.38 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (98.230 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (21.239 % of family members)
Environment Ontology (ENVO)	Unclassified (36.283 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (60.177 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 31.82% Coil/Unstructured: 68.18%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.53
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.53
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF02660	G3P_acyltransf	77.88
PF01210	NAD_Gly3P_dh_N	7.96
PF07479	NAD_Gly3P_dh_C	7.96
PF02743	dCache_1	1.77
PF00456	Transketolase_N	0.88
PF07690	MFS_1	0.88
PF12704	MacB_PCD	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG0344	Phospholipid biosynthesis protein PlsY, probable glycerol-3-phosphate acyltransferase	Lipid transport and metabolism [I]	77.88
COG0240	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	7.96
COG2972	Sensor histidine kinase YesM	Signal transduction mechanisms [T]	1.77
COG0021	Transketolase	Carbohydrate transport and metabolism [G]	0.88
COG3959	Transketolase, N-terminal subunit	Carbohydrate transport and metabolism [G]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.23 %
Unclassified	root	N/A	1.77 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.23 %
Unclassified	root	N/A	1.77 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.23 %
Unclassified	root	N/A	1.77 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	43.36 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.65 %
Unclassified	root	N/A	1.77 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	39.82 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.77 %
Unclassified	root	N/A	1.77 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.88 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	39.82 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1.77 %
Unclassified	root	N/A	1.77 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.88 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	39.82 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.77 %
Unclassified	root	N/A	1.77 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.88 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	39.82 %
Unclassified	root	N/A	1.77 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.88 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.88 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	39.82 %
Unclassified	root	N/A	1.77 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.88 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.88 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001154\|JGI12636J13339_1009587	All Organisms → cellular organisms → Bacteria	1500	Open in IMG/M
3300001593\|JGI12635J15846_10166431	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1494	Open in IMG/M
3300003370\|JGI26337J50220_1016203	All Organisms → cellular organisms → Bacteria	864	Open in IMG/M
3300005435\|Ga0070714_102068952	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	555	Open in IMG/M
3300005439\|Ga0070711_101032930	All Organisms → cellular organisms → Bacteria	706	Open in IMG/M
3300005445\|Ga0070708_101321177	All Organisms → cellular organisms → Bacteria	673	Open in IMG/M
3300005602\|Ga0070762_11144770	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	537	Open in IMG/M
3300005712\|Ga0070764_10509394	All Organisms → cellular organisms → Bacteria	724	Open in IMG/M
3300006032\|Ga0066696_10148080	All Organisms → cellular organisms → Bacteria	1462	Open in IMG/M
3300006176\|Ga0070765_101204355	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	715	Open in IMG/M
3300006176\|Ga0070765_102194141	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300007258\|Ga0099793_10019618	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2760	Open in IMG/M
3300007265\|Ga0099794_10479087	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	654	Open in IMG/M
3300007788\|Ga0099795_10486873	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300009038\|Ga0099829_11285236	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	605	Open in IMG/M
3300009090\|Ga0099827_11656999	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	557	Open in IMG/M
3300009521\|Ga0116222_1117547	All Organisms → cellular organisms → Bacteria	1145	Open in IMG/M
3300009645\|Ga0116106_1230383	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300009839\|Ga0116223_10211286	All Organisms → cellular organisms → Bacteria	1182	Open in IMG/M
3300010043\|Ga0126380_11267806	All Organisms → cellular organisms → Bacteria	639	Open in IMG/M
3300010046\|Ga0126384_10758772	All Organisms → cellular organisms → Bacteria	865	Open in IMG/M
3300010339\|Ga0074046_10835742	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	538	Open in IMG/M
3300010359\|Ga0126376_11191697	All Organisms → cellular organisms → Bacteria	776	Open in IMG/M
3300010361\|Ga0126378_12800292	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	557	Open in IMG/M
3300010398\|Ga0126383_11727512	All Organisms → cellular organisms → Bacteria	714	Open in IMG/M
3300010398\|Ga0126383_13149441	All Organisms → cellular organisms → Bacteria	539	Open in IMG/M
3300011269\|Ga0137392_10639666	All Organisms → cellular organisms → Bacteria	882	Open in IMG/M
3300011269\|Ga0137392_11321480	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	580	Open in IMG/M
3300011269\|Ga0137392_11333358	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	577	Open in IMG/M
3300011269\|Ga0137392_11507680	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	531	Open in IMG/M
3300012096\|Ga0137389_10101044	All Organisms → cellular organisms → Bacteria	2292	Open in IMG/M
3300012096\|Ga0137389_11293339	All Organisms → cellular organisms → Bacteria	623	Open in IMG/M
3300012206\|Ga0137380_10690426	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	887	Open in IMG/M
3300012363\|Ga0137390_10534288	All Organisms → cellular organisms → Bacteria	1144	Open in IMG/M
3300012925\|Ga0137419_10762212	All Organisms → cellular organisms → Bacteria	789	Open in IMG/M
3300012977\|Ga0134087_10016737	All Organisms → cellular organisms → Bacteria	2627	Open in IMG/M
3300012977\|Ga0134087_10061706	All Organisms → cellular organisms → Bacteria	1501	Open in IMG/M
3300014165\|Ga0181523_10034110	All Organisms → cellular organisms → Bacteria	3255	Open in IMG/M
3300016294\|Ga0182041_12312460	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	503	Open in IMG/M
3300016319\|Ga0182033_11718912	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	569	Open in IMG/M
3300016357\|Ga0182032_11439754	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	597	Open in IMG/M
3300017933\|Ga0187801_10272453	All Organisms → cellular organisms → Bacteria	684	Open in IMG/M
3300017943\|Ga0187819_10842436	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	514	Open in IMG/M
3300017955\|Ga0187817_10811868	All Organisms → cellular organisms → Bacteria	597	Open in IMG/M
3300017972\|Ga0187781_10102535	All Organisms → cellular organisms → Bacteria	1988	Open in IMG/M
3300017974\|Ga0187777_10035304	All Organisms → cellular organisms → Bacteria	3209	Open in IMG/M
3300018032\|Ga0187788_10143609	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	895	Open in IMG/M
3300018090\|Ga0187770_11465935	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	555	Open in IMG/M
3300018482\|Ga0066669_12213333	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	522	Open in IMG/M
3300018482\|Ga0066669_12429807	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	503	Open in IMG/M
3300020581\|Ga0210399_10081160	All Organisms → cellular organisms → Bacteria	2635	Open in IMG/M
3300020581\|Ga0210399_11511939	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	520	Open in IMG/M
3300020581\|Ga0210399_11526218	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	517	Open in IMG/M
3300021168\|Ga0210406_10578635	All Organisms → cellular organisms → Bacteria	879	Open in IMG/M
3300021170\|Ga0210400_11585407	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	517	Open in IMG/M
3300021180\|Ga0210396_10196916	All Organisms → cellular organisms → Bacteria	1801	Open in IMG/M
3300021384\|Ga0213876_10091653	All Organisms → cellular organisms → Bacteria	1610	Open in IMG/M
3300021402\|Ga0210385_11005472	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M
3300021402\|Ga0210385_11364125	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	543	Open in IMG/M
3300021404\|Ga0210389_11031556	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	637	Open in IMG/M
3300021405\|Ga0210387_11523294	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	571	Open in IMG/M
3300021420\|Ga0210394_11067870	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	697	Open in IMG/M
3300021420\|Ga0210394_11604242	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	547	Open in IMG/M
3300021420\|Ga0210394_11836544	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	504	Open in IMG/M
3300021477\|Ga0210398_10979998	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
3300021478\|Ga0210402_11045346	All Organisms → cellular organisms → Bacteria	744	Open in IMG/M
3300021478\|Ga0210402_11860853	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	528	Open in IMG/M
3300021559\|Ga0210409_10860399	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	780	Open in IMG/M
3300022533\|Ga0242662_10120965	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	767	Open in IMG/M
3300022563\|Ga0212128_10257398	All Organisms → cellular organisms → Bacteria	1103	Open in IMG/M
3300025477\|Ga0208192_1010343	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2734	Open in IMG/M
3300025905\|Ga0207685_10035054	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1828	Open in IMG/M
3300025906\|Ga0207699_10890481	All Organisms → cellular organisms → Bacteria	656	Open in IMG/M
3300026295\|Ga0209234_1101131	All Organisms → cellular organisms → Bacteria	1087	Open in IMG/M
3300026318\|Ga0209471_1337541	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	500	Open in IMG/M
3300026320\|Ga0209131_1234602	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	781	Open in IMG/M
3300026335\|Ga0209804_1054487	All Organisms → cellular organisms → Bacteria	1939	Open in IMG/M
3300026528\|Ga0209378_1300551	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	514	Open in IMG/M
3300026536\|Ga0209058_1270428	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	588	Open in IMG/M
3300026551\|Ga0209648_10283809	All Organisms → cellular organisms → Bacteria	1199	Open in IMG/M
3300026552\|Ga0209577_10264257	All Organisms → cellular organisms → Bacteria	1294	Open in IMG/M
3300026555\|Ga0179593_1078892	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2495	Open in IMG/M
3300026854\|Ga0207727_116859	All Organisms → cellular organisms → Bacteria	671	Open in IMG/M
3300027109\|Ga0208603_1005795	All Organisms → cellular organisms → Bacteria	2055	Open in IMG/M
3300027109\|Ga0208603_1030714	All Organisms → cellular organisms → Bacteria	844	Open in IMG/M
3300027497\|Ga0208199_1103190	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	588	Open in IMG/M
3300027616\|Ga0209106_1077808	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	743	Open in IMG/M
3300027678\|Ga0209011_1067205	All Organisms → cellular organisms → Bacteria	1073	Open in IMG/M
3300027783\|Ga0209448_10123868	All Organisms → cellular organisms → Bacteria	865	Open in IMG/M
3300027884\|Ga0209275_10066102	All Organisms → cellular organisms → Bacteria	1779	Open in IMG/M
3300027884\|Ga0209275_10695601	All Organisms → cellular organisms → Bacteria	585	Open in IMG/M
3300027889\|Ga0209380_10127143	All Organisms → cellular organisms → Bacteria	1484	Open in IMG/M
3300028047\|Ga0209526_10233425	All Organisms → cellular organisms → Bacteria	1264	Open in IMG/M
3300030659\|Ga0316363_10114964	All Organisms → cellular organisms → Bacteria	1182	Open in IMG/M
3300031668\|Ga0318542_10633913	All Organisms → cellular organisms → Bacteria → Acidobacteria	558	Open in IMG/M
3300031720\|Ga0307469_11662337	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	615	Open in IMG/M
3300031768\|Ga0318509_10738185	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	546	Open in IMG/M
3300031820\|Ga0307473_11300652	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	544	Open in IMG/M
3300031912\|Ga0306921_10015772	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	8192	Open in IMG/M
3300031941\|Ga0310912_11341248	All Organisms → cellular organisms → Bacteria → Acidobacteria	541	Open in IMG/M
3300031945\|Ga0310913_10553374	All Organisms → cellular organisms → Bacteria	816	Open in IMG/M
3300031946\|Ga0310910_10704047	All Organisms → cellular organisms → Bacteria	798	Open in IMG/M
3300031962\|Ga0307479_10198930	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1973	Open in IMG/M
3300031962\|Ga0307479_11186146	All Organisms → cellular organisms → Bacteria	727	Open in IMG/M
3300032076\|Ga0306924_10347777	All Organisms → cellular organisms → Bacteria	1700	Open in IMG/M
3300032174\|Ga0307470_10422537	All Organisms → cellular organisms → Bacteria → Proteobacteria	949	Open in IMG/M
3300032180\|Ga0307471_100450309	All Organisms → cellular organisms → Bacteria	1426	Open in IMG/M
3300032180\|Ga0307471_102671214	All Organisms → cellular organisms → Bacteria	633	Open in IMG/M
3300032205\|Ga0307472_100408647	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1138	Open in IMG/M
3300032954\|Ga0335083_10306477	All Organisms → cellular organisms → Bacteria	1393	Open in IMG/M
3300033289\|Ga0310914_11791087	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.11%
Host-Associated	Host-Associated	0.89%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	90.27%
Aquatic	Environmental → Aquatic	8.85%
Plants	Host-Associated → Plants	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	90.27%
Freshwater	Environmental → Aquatic → Freshwater	7.08%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.89%
Sediment	Environmental → Aquatic → Sediment	0.89%
Roots	Host-Associated → Plants → Roots	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	67.26%
Loam	Environmental → Terrestrial → Soil → Loam	17.70%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	7.08%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.31%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	32.74%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.78%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	13.27%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	9.73%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.31%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.42%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.65%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.65%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.77%
Unclassified	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified	0.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	21.24%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	14.16%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	7.08%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.19%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	6.19%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.31%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.42%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.54%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.54%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.54%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.65%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.77%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.77%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.77%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.89%
Thermal Springs	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs	0.89%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.89%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.89%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.89%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.89%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001154	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300003370	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009645	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018032	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP10_20_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021384	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9	Host-Associated	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022563	OV2_combined assembly	Environmental	Open in IMG/M
3300025477	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_150 (SPAdes)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026295	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026318	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)	Environmental	Open in IMG/M
3300026528	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)	Environmental	Open in IMG/M
3300026536	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026854	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 48 (SPAdes)	Environmental	Open in IMG/M
3300027109	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF008 (SPAdes)	Environmental	Open in IMG/M
3300027497	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG (SPAdes)	Environmental	Open in IMG/M
3300027616	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027678	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300030659	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2)	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12636J13339_10095873	3300001154	Forest Soil	MQQNMARESGLLKTNEFHLIESKLKPSGAEYTRLASFSFAAAEN*
JGI12635J15846_101664311	3300001593	Forest Soil	QNMARESGLLKTNEFHLIESKLKPSGAEYTRLASFSFAAAEN*
JGI26337J50220_10162031	3300003370	Bog Forest Soil	KDGEREFGEFHTREFHLIESKLKPEGAEYTTLRSFPFVAES*
Ga0070714_1020689521	3300005435	Agricultural Soil	SKENATRSFGSLTSREFHLIESKLKSTGAEYTTLHSFPFVAEA*
Ga0070711_1010329301	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	SDRFGEFTTAGFQLIESQLKTAGAEYTTLRSFTFVSEGKDS*
Ga0070708_1013211772	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	ENAQNRSFGKQIVRDFRLIESNLKSTGAEYTTLRSFPFAAEGNNP*
Ga0070762_111447702	3300005602	Soil	ENATREFGSLAAQEFHLIESQLKPSGAEYTTLESFPFVMAEA*
Ga0070764_105093941	3300005712	Soil	NFGSLVTTQFQLFESKLKPSGAEYTSLETFQFAKA*
Ga0066696_101480803	3300006032	Soil	AARELGSLRTSQFHLIESKLQPSGAEYTTLEGLPFVAEA*
Ga0075028_1006280162	3300006050	Watersheds	HPTGGLRDAIERNKALEFGAFRSAEFHLIESKLKPAGAEYTTVQSFPFVSEN*
Ga0070765_1012043552	3300006176	Soil	SLRTNQYHLIESKLKPSGAEYTTLESFPFVAAEA*
Ga0070765_1021941411	3300006176	Soil	RNFGELHASEFHLIESKLKPSGAEYTTLQSFPFVSKD*
Ga0099793_100196184	3300007258	Vadose Zone Soil	AAREFGPLRTNQFHLIESKLKLSGAEYTTVESFSFAAAEA*
Ga0099794_104790871	3300007265	Vadose Zone Soil	SLRISQFHLIESKLKPSGAEYTTVASFPFAAAEA*
Ga0099795_104868732	3300007788	Vadose Zone Soil	ILRTGEFHLIESKTHPAGAEYTRLSSFAFAKAEA*
Ga0099829_112852362	3300009038	Vadose Zone Soil	SLRTNQFHLIESKLKSSGAEYTTVETFPFAAAEA*
Ga0099827_116569992	3300009090	Vadose Zone Soil	ARDFGSLRTSQFHLIESKLKPSGAEYTTLESFPFAAEA*
Ga0116222_11175471	3300009521	Peatlands Soil	HGLPSFGSLSAREFHLIESRPKPTGAEYSTVQSFPFVTET*
Ga0116106_12303832	3300009645	Peatland	SREFGSLTTREFHLIESKLKPSGAEYTTLHSYPFVSEA*
Ga0116223_102112861	3300009839	Peatlands Soil	ERSARDFGSLVARDFHLIESKLKPAGAEYTTLQSFPFVAEV*
Ga0126380_112678061	3300010043	Tropical Forest Soil	AYAANAIRDFGILHTGKFHLIESKLKPSGAQYTTLRSFVFAPEP*
Ga0126384_107587721	3300010046	Tropical Forest Soil	AQSFGSLTTSEFHLIESQLKPTGAEYTTVQTVRFAPGA*
Ga0074046_108357422	3300010339	Bog Forest Soil	SAAEERSSREFGSLTAREFHLIESKLKPSGAEYTTLHSFPFVTEA*
Ga0126376_111916972	3300010359	Tropical Forest Soil	VAKYATHEFGAAHVAEFHLIESKLKPSGAEYTTLQSFPFAAEA*
Ga0126378_128002922	3300010361	Tropical Forest Soil	TAVKANLAREFGSLAAQEFHLIESKLKRSGAEYTTIQSFPFVPGT*
Ga0126383_117275121	3300010398	Tropical Forest Soil	ASEENATRSVGSLSSGEFHLIESKLKSTGAEYTTLHSFPFVAEA*
Ga0126383_131494411	3300010398	Tropical Forest Soil	ENARREFGTAHAREFYLMQSKLKPTGAEYTCLEAFPFVAEA*
Ga0137392_106396661	3300011269	Vadose Zone Soil	ENAPRDFGSLCTRQFHLIESELKSGGAEYTTLASFSFATAEA*
Ga0137392_113214802	3300011269	Vadose Zone Soil	RDFGSLRTNQFHLIESKLKPSGAEYTTVESFSFAAAEA*
Ga0137392_113333582	3300011269	Vadose Zone Soil	FGSVRTGEFHLIESKLKSTGAEYTTLQTFRFATEV*
Ga0137392_115076802	3300011269	Vadose Zone Soil	SAHSFGSLRTGEFHLIESKLKSTGAEYTTLQTFRFAAEA*
Ga0137389_101010443	3300012096	Vadose Zone Soil	NAAREFGSLRTNQYHLIESKLKPSGAEYTTLESFPFVAAEA*
Ga0137389_112933392	3300012096	Vadose Zone Soil	EFGSVAAREFHLIESKLKPGGAEYTTLETFPFVEAEV*
Ga0137380_106904261	3300012206	Vadose Zone Soil	REFGSFRTNQYLLIESKLKPSGAGYTTLESFPFAAAEA*
Ga0137390_105342883	3300012363	Vadose Zone Soil	FGSLRANQFHLIQSKLKPTGAEYTTLESFPFAAAEV*
Ga0137419_107622122	3300012925	Vadose Zone Soil	FGSVAAGEFHLIESKLKPGGAQYTTVEAFPFVVAKA*
Ga0134087_100167371	3300012977	Grasslands Soil	NAKRDFGSLHSGKFHLIESKLKPSGAEYTTVESFSFAAAEV*
Ga0134087_100617061	3300012977	Grasslands Soil	REFGSLRTSEFHLIQSKLKPSGAEYTALTSFPFAPSVE*
Ga0181523_100341104	3300014165	Bog	RSFGSLSTREFHLIESRLKSTGAEYTTVQSFPFVTET*
Ga0182041_123124602	3300016294	Soil	FGSLTATEFQLIESKLKPTGAEYTTLKSFPFVSET
Ga0182033_117189122	3300016319	Soil	RTLDSFGSLTATEFHLIESKLKPAGAEYTTVQTVRFAPGG
Ga0182032_114397542	3300016357	Soil	SRGFGSLTAAEFQLIESKLKPSGAEYTTLQSFPFVSEN
Ga0187801_102724531	3300017933	Freshwater Sediment	ENASSGFGTFCTREFHLIESKLKPTGAEYTNLQSFPFVAEK
Ga0187819_108424361	3300017943	Freshwater Sediment	NMAREFGAFETGQFHLIESKLKPSGAEYTTLQSFSFVAEA
Ga0187817_108118681	3300017955	Freshwater Sediment	VRENMAREFGAFETGQFHLIESKLKPSGAEYTTLQSFPFVAEA
Ga0187781_101025353	3300017972	Tropical Peatland	FGSLTARAFHLIESKLKPGGAEYTTLKSFPFVAGT
Ga0187777_100353041	3300017974	Tropical Peatland	QTFGIMTTREFHLIESKLKPAGAEYTTLRSFPFAAEI
Ga0187788_101436091	3300018032	Tropical Peatland	TADRAVRDFGALRTAEFRLIESKLKPTGAEYTTLQNFAFASEN
Ga0187770_114659352	3300018090	Tropical Peatland	AAQEAASRDLGSLIARKFHLIESKLKPAGAEYTTLQSFPFVAEV
Ga0066669_122133332	3300018482	Grasslands Soil	ENAARELGSLRTSQFHLIESKLQPSGAEYTTLESLPFVAEA
Ga0066669_124298071	3300018482	Grasslands Soil	LGSLRTSQFHLIESKLQPSGAEYTTLESLPFVAEA
Ga0210399_100811601	3300020581	Soil	AQTFGCLLTREIHLIESKLKPTGAEYTTVQTFRFATEA
Ga0210399_115119392	3300020581	Soil	PQPFGSLRTGEFHLIESKLKTTGAEYTTVQTFRFATEA
Ga0210399_115262182	3300020581	Soil	AFGSLRAGEFHLIESKLKPTGAEYTTVQTFRFATEA
Ga0210406_105786351	3300021168	Soil	IQEKIAQSFGSLQTGQFHLIESKLKPAGAEYTTVQSFRFAAEA
Ga0210400_115854071	3300021170	Soil	RDFGVLHTSEFHLIESKLKPMGAEYTTLQSFSFVSKD
Ga0210396_101969161	3300021180	Soil	SLGSLATRQFHLIESKLKPTGAEYTTVQSFHFASEA
Ga0213876_100916533	3300021384	Plant Roots	HQATRDFGELHTSEFHLIESKLKPTGAEYTTLQSFPFVSKD
Ga0210385_110054722	3300021402	Soil	KSGEREFGSFQTREFHLIESKLKPSGAEYTTLASFPFSLEA
Ga0210385_113641251	3300021402	Soil	RDFGELRTGQFHLIESKLKASGAEYTTLQSFVFAAEA
Ga0210389_110315562	3300021404	Soil	QSFGSLRTQEFHLIESKLKPTGAEYTTLQTFRFATEA
Ga0210387_115232942	3300021405	Soil	ERDSARDFGGLRTTQFHLIESKLKASGAEYTTLQSFVFAAEA
Ga0210394_110678702	3300021420	Soil	SSQPFGSLRAGEFHLIESKLKPSGAEYTTVQTFRFATEA
Ga0210394_116042421	3300021420	Soil	MLSTVAHENAARSFGSFTAREFHLIESKLKPSGAEYTTLQSFTFVAEA
Ga0210394_118365442	3300021420	Soil	EKSGQSLGSLATRQFHLIESKLKPTGAEYTTVQSFHFASEA
Ga0210398_109799981	3300021477	Soil	FGSFQTREFHLIESKLKPSGAEYTTLASFPFTLEA
Ga0210402_110453461	3300021478	Soil	EAIERNASHEFGTFQTAEFHLIESKLKPAGAEYTSLQSFSFVSES
Ga0210402_118608531	3300021478	Soil	AERDSARDFGELRTNAFHLIESKLKASGAEYTTLQSFVFAAEA
Ga0210409_108603992	3300021559	Soil	GQSLGSLATRQFHLIESKLKPTGAEYTTVQSFHFASEA
Ga0242662_101209651	3300022533	Soil	KNAQSFGSLRTQEFHLIESKLKPTGAEYTTLQTFRLATEA
Ga0212128_102573983	3300022563	Thermal Springs	RRGALEFGEMRADEFHLYESRLKPSGAEYVKLATFSCAEAAR
Ga0208192_10103434	3300025477	Peatland	EDASREFGSLIAREFHLIESKLKPAGAEYTTLQSFPFVAEV
Ga0207685_100350543	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	AASKENATRSFGSLTSREFHLIESKLKSTGAEYTTLHSFPFVAEA
Ga0207699_108904811	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	NATRAFGTLHAGTFHLIQSKLKTSGAEYTTLRSFPFAAED
Ga0209234_11011311	3300026295	Grasslands Soil	EKLRAAVHENGAESFGDLHTHEFHLIESKLKPSGAEYVSLHSFLFAEA
Ga0209471_13375411	3300026318	Soil	FGSLRTSQFHLIESKLKSSGAEYTTVESFSFAAAEA
Ga0209131_12346022	3300026320	Grasslands Soil	FGSLCTGEFHLIESKLKPTGAEYTTVQTFHFATEA
Ga0209804_10544873	3300026335	Soil	AARELGSLRTSQFHLIESKLKPSGAEYTTLESLPFVAEA
Ga0209378_13005511	3300026528	Soil	FGSLRAGKFHLIESKLKPSGAEYTTVESFSFAAAEV
Ga0209058_12704281	3300026536	Soil	AARDFGSLRTNQFHLIENKLKRCGAEYTTLESFPFAAAEA
Ga0209648_102838093	3300026551	Grasslands Soil	EFGSLRTSEFHLIESKLKPSGAEYTRLASFSFAEAKT
Ga0209577_102642573	3300026552	Soil	REFGSFRTSQYQLIESKLKPSGAEYTTLESFPFAAAEA
Ga0179593_10788924	3300026555	Vadose Zone Soil	SGSLRTNQYHLIESKLKPSGAEYTTLESFPFTAAEA
Ga0207727_1168591	3300026854	Tropical Forest Soil	FGSLTAAEFQLIESKLKPSGAEYTTLQSFPFVSEN
Ga0208603_10057951	3300027109	Forest Soil	QVNAARDFGSLRTSQFHLIESKLKPSGAEYTTLESFSFSVAEA
Ga0208603_10307142	3300027109	Forest Soil	IQKSGAREFGSFQTREFYLIESKLKPSGAEYTTLASYPFTLEA
Ga0208199_11031902	3300027497	Peatlands Soil	QAIGHDFGSLRTNQFHLIESKLKPSGAEYTTVESFSFAAAEA
Ga0209106_10778081	3300027616	Forest Soil	AREFGSFRTNQCHLIESKLKPSGAEYTTLESFPFVAAEA
Ga0209011_10672051	3300027678	Forest Soil	VVRENAKRDFGALRADEFHLIESKLKPGGAEYTTLETFPFVVAEV
Ga0209448_101238681	3300027783	Bog Forest Soil	EREFGEFHTREFHLIESKLKPEGAEYTTLRSFPFVAES
Ga0209180_105333781	3300027846	Vadose Zone Soil	QENPARDFGSLRTNQFQLIESKLKSSGAEYTTVETFPFAAAEA
Ga0209275_100661023	3300027884	Soil	EKSGQPFGSLSTQQFHLIESKLKPTGAEYTTLQTFRFATEA
Ga0209275_106956012	3300027884	Soil	TRDFGELHTSEFHLIESKLKPSGAEYTTLQSFPFVSEV
Ga0209380_101271431	3300027889	Soil	FGSLAAQEFHLIESQLKPSGAEYTTLESFPFVMAEA
Ga0209526_102334251	3300028047	Forest Soil	AIEKDTARDLGAFTTNQFHLIESQLKPTGAEYTTLQSFVFSAEG
Ga0316363_101149643	3300030659	Peatlands Soil	HEFGSLVTREFRLIESKLKPAGAEYTTLQSFPFVAEV
Ga0318542_106339131	3300031668	Soil	VKENATRKFGSLATSEFHLIESKLKPAGAEYTTVQSFPFVVEA
Ga0307469_116623372	3300031720	Hardwood Forest Soil	AMNDKSGQPFGSLRTPDFHLIESKLKPTGAEYTTLQTFHFATEA
Ga0318509_107381851	3300031768	Soil	AAEQHAPRVFGSLIAREFHLIESRLKPAGAEYTTLQSFPLAPEK
Ga0307473_113006522	3300031820	Hardwood Forest Soil	FGSLRTDEFHLIESKLKPSGAEYTTLESFRFARAEA
Ga0306921_100157721	3300031912	Soil	TAVKANLAREFGSLAAQEFHLIESKLKRSGAEYTTIQSFPFVPGT
Ga0310912_113412482	3300031941	Soil	ENATRKFGSLATSEFHLIESKLKPAGAEYTTVQSFPFVVEA
Ga0310913_105533742	3300031945	Soil	QQNQSRGFGSLTAAEFQLIESKLKPSGAEYTTLQSFPFVSEN
Ga0310910_107040472	3300031946	Soil	VQQNQSRGFGSLTAAEFQLIESKLKPSGAEYTTLQSFPFVSEN
Ga0307479_101989304	3300031962	Hardwood Forest Soil	GSLPTSEFHLIESKLKPSGAEYTRLASISFAETET
Ga0307479_111861461	3300031962	Hardwood Forest Soil	TREFGAVETNQFHLIESKLKPSGAEYTTLQSLSFVSGR
Ga0306924_103477773	3300032076	Soil	GFGSLTAAEFQLIESKLKPSGAEYTTLQSFPFVSEN
Ga0307470_104225371	3300032174	Hardwood Forest Soil	EKSSQTFGSLNTREFHLIESKLKPTGAEYTTVQSFHFAPEA
Ga0307471_1004503091	3300032180	Hardwood Forest Soil	ENARREFGSVATEEFHLIESKLKPGGAEYTTLETFPFVVAEA
Ga0307471_1026712141	3300032180	Hardwood Forest Soil	LGSFSTHEFQLIESKLKSTGAEYTTLQSFSFVTEA
Ga0307472_1004086471	3300032205	Hardwood Forest Soil	MCKVVERNATRAFGTLRAGAFHLMLSKLKPAGAEYTTLRSFPFAAEA
Ga0335083_103064771	3300032954	Soil	GKNARREFGTIMTREFRLIESRLKAGGAEYTTVQQFQFATEF
Ga0310914_117910871	3300033289	Soil	REFGSLRTGEFHLMQSKLKPSGAEYTTLKTFPFSTSVE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F082964

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences