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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F082960 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 113 |
| Average Sequence Length | 44 residues |
| Representative Sequence | MLVALLGRGPAVLRAERLDPGGTRMPRQHAKDGITRMPSAVYKV |
| Number of Associated Samples | 99 |
| Number of Associated Scaffolds | 113 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 84.07 % |
| % of genes near scaffold ends (potentially truncated) | 23.89 % |
| % of genes from short scaffolds (< 2000 bps) | 72.57 % |
| Associated GOLD sequencing projects | 96 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.13 |
| Hidden Markov Model |
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| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (63.717 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (17.699 % of family members) |
| Environment Ontology (ENVO) | Unclassified (31.858 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (35.398 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.13 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 113 Family Scaffolds |
|---|---|---|
| PF00672 | HAMP | 24.78 |
| PF13520 | AA_permease_2 | 17.70 |
| PF00067 | p450 | 2.65 |
| PF01126 | Heme_oxygenase | 0.88 |
| PF00324 | AA_permease | 0.88 |
| PF13450 | NAD_binding_8 | 0.88 |
| PF13424 | TPR_12 | 0.88 |
| PF02518 | HATPase_c | 0.88 |
| COG ID | Name | Functional Category | % Frequency in 113 Family Scaffolds |
|---|---|---|---|
| COG2124 | Cytochrome P450 | Defense mechanisms [V] | 2.65 |
| COG0531 | Serine transporter YbeC, amino acid:H+ symporter family | Amino acid transport and metabolism [E] | 0.88 |
| COG0833 | Amino acid permease | Amino acid transport and metabolism [E] | 0.88 |
| COG1113 | L-asparagine transporter or related permease | Amino acid transport and metabolism [E] | 0.88 |
| COG1115 | Na+/alanine symporter | Amino acid transport and metabolism [E] | 0.88 |
| COG3230 | Heme oxygenase | Inorganic ion transport and metabolism [P] | 0.88 |
| COG5398 | Heme oxygenase | Coenzyme transport and metabolism [H] | 0.88 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 63.72 % |
| All Organisms | root | All Organisms | 36.28 % |
| Visualization |
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| Powered by ApexCharts |
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| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 17.70% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 10.62% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 7.96% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 7.08% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 6.19% |
| Agricultural Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil | 5.31% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 4.42% |
| Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil | 3.54% |
| Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 3.54% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 2.65% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere | 2.65% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 2.65% |
| Soil | Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil | 1.77% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 1.77% |
| Tabebuia Heterophylla Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere | 1.77% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere | 1.77% |
| Bog Forest Soil | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil | 0.89% |
| Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 0.89% |
| Groundwater Sediment | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment | 0.89% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 0.89% |
| Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 0.89% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil | 0.89% |
| Unplanted Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil | 0.89% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 0.89% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 0.89% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil | 0.89% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil | 0.89% |
| Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 0.89% |
| Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil | 0.89% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere | 0.89% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere | 0.89% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere | 0.89% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere | 0.89% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 0.89% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 0.89% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere | 0.89% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere | 0.89% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300003659 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 | Host-Associated | Open in IMG/M |
| 3300004114 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5 | Environmental | Open in IMG/M |
| 3300005169 | Soil and rhizosphere microbial communities from Laval, Canada - mgHPA | Environmental | Open in IMG/M |
| 3300005327 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG | Host-Associated | Open in IMG/M |
| 3300005332 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly) | Environmental | Open in IMG/M |
| 3300005364 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG | Host-Associated | Open in IMG/M |
| 3300005434 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG | Environmental | Open in IMG/M |
| 3300005436 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG | Environmental | Open in IMG/M |
| 3300005437 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG | Environmental | Open in IMG/M |
| 3300005471 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG | Environmental | Open in IMG/M |
| 3300005553 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 | Environmental | Open in IMG/M |
| 3300005563 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 | Host-Associated | Open in IMG/M |
| 3300005764 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2) | Environmental | Open in IMG/M |
| 3300006028 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG | Environmental | Open in IMG/M |
| 3300006050 | Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014 | Environmental | Open in IMG/M |
| 3300006176 | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 | Environmental | Open in IMG/M |
| 3300006358 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 | Host-Associated | Open in IMG/M |
| 3300006755 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter | Environmental | Open in IMG/M |
| 3300006804 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 | Environmental | Open in IMG/M |
| 3300006806 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 | Environmental | Open in IMG/M |
| 3300006854 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4 | Host-Associated | Open in IMG/M |
| 3300006903 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5 | Host-Associated | Open in IMG/M |
| 3300006954 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control | Environmental | Open in IMG/M |
| 3300009162 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2 | Host-Associated | Open in IMG/M |
| 3300010043 | Tropical forest soil microbial communities from Panama - MetaG Plot_26 | Environmental | Open in IMG/M |
| 3300010154 | Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300010359 | Tropical forest soil microbial communities from Panama - MetaG Plot_15 | Environmental | Open in IMG/M |
| 3300010361 | Tropical forest soil microbial communities from Panama - MetaG Plot_23 | Environmental | Open in IMG/M |
| 3300010399 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3 | Environmental | Open in IMG/M |
| 3300011120 | Combined assembly of Microbial Forest Soil metaT | Environmental | Open in IMG/M |
| 3300012200 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG | Environmental | Open in IMG/M |
| 3300012201 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG | Environmental | Open in IMG/M |
| 3300012204 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG | Environmental | Open in IMG/M |
| 3300012206 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG | Environmental | Open in IMG/M |
| 3300012208 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG | Environmental | Open in IMG/M |
| 3300012349 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG | Environmental | Open in IMG/M |
| 3300012473 | Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.12.yng.090610 | Host-Associated | Open in IMG/M |
| 3300012497 | Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.2.old.240510 | Host-Associated | Open in IMG/M |
| 3300012517 | Unplanted soil (control) microbial communities from North Carolina - M.Soil.6.yng.070610 | Environmental | Open in IMG/M |
| 3300012917 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG | Environmental | Open in IMG/M |
| 3300012951 | Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG | Environmental | Open in IMG/M |
| 3300012986 | Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG | Environmental | Open in IMG/M |
| 3300013100 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG | Host-Associated | Open in IMG/M |
| 3300013308 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG | Host-Associated | Open in IMG/M |
| 3300014157 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG | Environmental | Open in IMG/M |
| 3300015371 | Combined assembly of cpr5 and col0 rhizosphere and soil | Host-Associated | Open in IMG/M |
| 3300016319 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H | Environmental | Open in IMG/M |
| 3300019361 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2) | Environmental | Open in IMG/M |
| 3300020069 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300020070 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300020081 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300020579 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M | Environmental | Open in IMG/M |
| 3300021171 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M | Environmental | Open in IMG/M |
| 3300021178 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M | Environmental | Open in IMG/M |
| 3300021405 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O | Environmental | Open in IMG/M |
| 3300021415 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s1 | Environmental | Open in IMG/M |
| 3300021478 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M | Environmental | Open in IMG/M |
| 3300021479 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M | Environmental | Open in IMG/M |
| 3300022756 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1 | Environmental | Open in IMG/M |
| 3300025915 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025942 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026310 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes) | Environmental | Open in IMG/M |
| 3300027725 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes) | Environmental | Open in IMG/M |
| 3300027787 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes) | Environmental | Open in IMG/M |
| 3300027812 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes) | Environmental | Open in IMG/M |
| 3300028718 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194 | Environmental | Open in IMG/M |
| 3300028768 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119 | Environmental | Open in IMG/M |
| 3300031170 | Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S | Environmental | Open in IMG/M |
| 3300031199 | Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 7_S | Environmental | Open in IMG/M |
| 3300031231 | Coassembly Site 11 (all samples) - Champenoux / Amance forest | Environmental | Open in IMG/M |
| 3300031469 | Fir Spring Coassembly Site 11 - Champenoux / Amance forest | Environmental | Open in IMG/M |
| 3300031474 | Fir Coassembly Site 11 - Champenoux / Amance forest | Environmental | Open in IMG/M |
| 3300031544 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26 | Environmental | Open in IMG/M |
| 3300031561 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26 | Environmental | Open in IMG/M |
| 3300031640 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23 | Environmental | Open in IMG/M |
| 3300031668 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23 | Environmental | Open in IMG/M |
| 3300031720 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515 | Environmental | Open in IMG/M |
| 3300031740 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05 | Environmental | Open in IMG/M |
| 3300031747 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22 | Environmental | Open in IMG/M |
| 3300031799 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21 | Environmental | Open in IMG/M |
| 3300031860 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25 | Environmental | Open in IMG/M |
| 3300031890 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2) | Environmental | Open in IMG/M |
| 3300031912 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2) | Environmental | Open in IMG/M |
| 3300031946 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172 | Environmental | Open in IMG/M |
| 3300031947 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H | Environmental | Open in IMG/M |
| 3300031996 | Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2 | Environmental | Open in IMG/M |
| 3300032008 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18 | Environmental | Open in IMG/M |
| 3300032010 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22 | Environmental | Open in IMG/M |
| 3300032066 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18 | Environmental | Open in IMG/M |
| 3300032076 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2) | Environmental | Open in IMG/M |
| 3300032261 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2) | Environmental | Open in IMG/M |
| 3300032770 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5 | Environmental | Open in IMG/M |
| 3300032783 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3 | Environmental | Open in IMG/M |
| 3300032805 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2 | Environmental | Open in IMG/M |
| 3300032893 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1 | Environmental | Open in IMG/M |
| 3300032898 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1 | Environmental | Open in IMG/M |
| 3300032954 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2 | Environmental | Open in IMG/M |
| 3300032955 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5 | Environmental | Open in IMG/M |
| 3300033134 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2 | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| JGI25404J52841_100043923 | 3300003659 | Tabebuia Heterophylla Rhizosphere | MLVALLGRGPAVLRAERLDPDGTRLPRQHARDGITRMPSAVNKV* |
| JGI25404J52841_101118451 | 3300003659 | Tabebuia Heterophylla Rhizosphere | LREAFMLVALLGRGPAVLRAERLDPDGTRLPRQHAKDGITRMPSAVNKV* |
| Ga0062593_1029844662 | 3300004114 | Soil | MLVALLGRGPAVLRDERLDPGETRMPRKHAKDGITRMPSAVYKV* |
| Ga0066810_101372931 | 3300005169 | Soil | MLVVLLGRGPAVLRAERLDPGGTRKRRQHTKDGVTRMPSAVYKV* |
| Ga0070658_110573141 | 3300005327 | Corn Rhizosphere | LVALLGRGPAVLRDERLDPGETRMPRKHAKDGITRMPSAVYKV* |
| Ga0066388_1000520084 | 3300005332 | Tropical Forest Soil | MLVALPGAYPAVLRDERLDPYGTRRRRPHTADGITRTPSAADKV* |
| Ga0066388_1000616643 | 3300005332 | Tropical Forest Soil | MLVALLGRGPAVLRAERLDRDGTRMPREHAKDGITSMPSAVYKV* |
| Ga0070673_1020257621 | 3300005364 | Switchgrass Rhizosphere | LREAFMLVALLGRGPAVLRDERLDPGETRMPRKHAKDGITRMPSAVYKV* |
| Ga0070709_100764632 | 3300005434 | Corn, Switchgrass And Miscanthus Rhizosphere | MLVALPGRGPAGLRAERLDPGGTRMPRQHAEDGIARMPSAVCKV* |
| Ga0070709_102406332 | 3300005434 | Corn, Switchgrass And Miscanthus Rhizosphere | MLVALLGRGPAVLRAERLDPGGNRMPRQHAKDGITRMPSAVYKV* |
| Ga0070709_111375451 | 3300005434 | Corn, Switchgrass And Miscanthus Rhizosphere | MLVALLGRGPAVLRAERLDPGGTRKRRQHAKDGITRMPSAVYKV* |
| Ga0070713_1024393232 | 3300005436 | Corn, Switchgrass And Miscanthus Rhizosphere | MLVALLGRGPAVLRAERLDPGGTRMPRQHAKDGITRMPSAVCKV* |
| Ga0070710_111735221 | 3300005437 | Corn, Switchgrass And Miscanthus Rhizosphere | ALREAFMLVALLGRGPAVLRAERLDPGGTRMPRQHAKDGITRMPSAVYKV* |
| Ga0070698_1005204451 | 3300005471 | Corn, Switchgrass And Miscanthus Rhizosphere | MLVVLLGLCPAVLRAERLDPCETRRCRQHIRDGITRMRSPVY |
| Ga0066695_101442592 | 3300005553 | Soil | MLVALLGRGPAVLKAERLDPGGTRKPRQCTKDGITRMPSAVYKV* |
| Ga0068855_1019989072 | 3300005563 | Corn Rhizosphere | LREAFMLVALLGRGPAVLRAERLDPGGTRKRRQHAKDGITRMPSAVYKV* |
| Ga0066903_1024393492 | 3300005764 | Tropical Forest Soil | MLVALPGVCPAVLRAERLEPSGTRQCRQHTTDGTMRMPSAVGKV* |
| Ga0070717_101875422 | 3300006028 | Corn, Switchgrass And Miscanthus Rhizosphere | MLVVLLGLCPAVLRAERLDPCETRRCRQHIRGIRDGITRVPSPVYKV* |
| Ga0075028_1002535422 | 3300006050 | Watersheds | LREGSMLVVLLGLCPAVLRAERLDPCETRRCRQHIRGIRDGITRMPSPVYKV* |
| Ga0070765_1012753262 | 3300006176 | Soil | MLVALPGLCPAVLTAERLDPAGTRTCRQRTRDGITRIP |
| Ga0068871_1000888142 | 3300006358 | Miscanthus Rhizosphere | MLVALLGRGPAVLRAERLDPGGTRMPRQHAEDGIARMPSAVCKV* |
| Ga0079222_124720151 | 3300006755 | Agricultural Soil | LVALPGRGPAVLRAERLDPGGTRMPRQHAEDGIARMPSAVYKV* |
| Ga0079221_100809622 | 3300006804 | Agricultural Soil | LCRSGARLSLEGGFMLVALPGRGPAVLRAERLDPGRTRMPRQHAEDGIARMPSAVYKV* |
| Ga0079220_102787181 | 3300006806 | Agricultural Soil | MLVALPGRGPAVLRAERLDPGGTRMPRQHAEDGIARMPSAVYKV* |
| Ga0075425_1020649711 | 3300006854 | Populus Rhizosphere | MLVALPGRGPAVLRAERLDPGRTRMPRQHAEDGIARMPSAVYKV* |
| Ga0075425_1030165682 | 3300006854 | Populus Rhizosphere | LSLEGGFMLVALPGRGPAVLRAERLDPGGTRMPRQHAKDGITRMPSAVYKV* |
| Ga0075426_111072732 | 3300006903 | Populus Rhizosphere | MLVALPGRGPAVLRAERLDPGETRMPRKHAKDGITRMPSAVYKV* |
| Ga0079219_104335972 | 3300006954 | Agricultural Soil | MLVALPGRGPAVLRAERLNPGGTRMPRQHAEDGIARMPSAVYKV* |
| Ga0075423_125573112 | 3300009162 | Populus Rhizosphere | MLVALLGRGPAVLRDERLDPGETRMPRKHAKDGITRKPSAVYKV* |
| Ga0126380_102214051 | 3300010043 | Tropical Forest Soil | RLSLEGGFMLVALLGRGPAVLRAERLDRDGTRMPREHAKDGITRMPSAVNKV* |
| Ga0127503_104277552 | 3300010154 | Soil | MLVALPGRYPAVLGDERLDPYGTRKYRHRTKDGIMRMPQAVDKM* |
| Ga0127503_106393592 | 3300010154 | Soil | LREGSMLVVLLGLRPVVLRAERLDPCETRRCRQHIREIRDGITRMPSPVYKV* |
| Ga0126376_119666392 | 3300010359 | Tropical Forest Soil | MLVALPGRGPAVLRAERLDPGRTRMPREHAKDGITRMPSAVNKV* |
| Ga0126378_120815011 | 3300010361 | Tropical Forest Soil | MLVALPGLCPAVLTAERLDPAGTRKRRLRTGGGITRIPSAVSKV* |
| Ga0134127_103044032 | 3300010399 | Terrestrial Soil | PAVLRDERLDPGETRMPRKHAKDGITRMPSAVYKV* |
| Ga0150983_164416511 | 3300011120 | Forest Soil | MLVVLLGLCPAVPRAERLDPCETRGCRQHIRDIRDGITRMPSPVYKV* |
| Ga0137382_104055511 | 3300012200 | Vadose Zone Soil | MLVALLGRGPAVLRAERLDSGGTRMPRQHAKDGITRMPSAVYKV* |
| Ga0137365_100059682 | 3300012201 | Vadose Zone Soil | MLVVLLGRGPAVLRAERLDPGGTRKRRQHTKDGITRTPSAVYKV* |
| Ga0137374_109250541 | 3300012204 | Vadose Zone Soil | LLGRGPAVLRAERLDPGGTRKRRQHTKDGITRTPSAVYKV* |
| Ga0137380_103160362 | 3300012206 | Vadose Zone Soil | MLVVLLGRGPAVLRGERLDPDGTRKRRQHTRDGITRMPSAVYKV* |
| Ga0137376_110240632 | 3300012208 | Vadose Zone Soil | LGRGPAVLRAERLDPGGTRMPRQHAKDGITRMPSAVYKV* |
| Ga0137387_101764762 | 3300012349 | Vadose Zone Soil | MLVALLGRGPAVLRAERLDPGGTRKRRQHTTDGITYMPSAVYKV* |
| Ga0157340_10133751 | 3300012473 | Arabidopsis Rhizosphere | MLVALLGRGPAVLRAERLDPGGTRKRRQHTKDGITRKPSAVYKV* |
| Ga0157319_10476231 | 3300012497 | Arabidopsis Rhizosphere | MLVALLGRGPAVLRDERLDPGETRMPRKHAKDGITHMSSAVYKV* |
| Ga0157354_10246812 | 3300012517 | Unplanted Soil | MLVALLGRGPAVLKAERLDPGGTRKPRQHTKDGITRMPSAICKM* |
| Ga0137395_108131442 | 3300012917 | Vadose Zone Soil | MLVVLLGLCPAVLRAERLDPCETRRCRQHIADIRDGITPMPSPVYKV* |
| Ga0164300_104923002 | 3300012951 | Soil | AFMLVALLGRGPAVLRAERLDPGGTRKRRQHAKDGITRMPSAVYKV* |
| Ga0164304_101097732 | 3300012986 | Soil | MLVALLGRGPAVLRDERLDPGGTRKRRQHTKDGITRMPSAVYKV* |
| Ga0157373_100628871 | 3300013100 | Corn Rhizosphere | MLVALLGRGPVVLRDERLDPGETRMPRKHAKDGITRMPSAVYKV* |
| Ga0157375_105446881 | 3300013308 | Miscanthus Rhizosphere | MLVALLGRGPAVLRAERLDPGGTRMPRQHAEDGIARMPSAVCK |
| Ga0134078_102295312 | 3300014157 | Grasslands Soil | MLVALLGRGPAVLKAERRDPGGTRKRRQHTTDGITHMPSAVYKV* |
| Ga0132258_129589732 | 3300015371 | Arabidopsis Rhizosphere | MLVALLGRGPAVLKAERLDPGGTRMPRQHAKDGITRMPSAVCKV* |
| Ga0182033_109133232 | 3300016319 | Soil | MLVALPGLCPAVLRAERLGPSGIRKCRQHTADGITRMP |
| Ga0173482_102599241 | 3300019361 | Soil | MLVALLGRGPAVLRAERLDPGGTRMPRQHAKDGITRMPSAVYKV |
| Ga0197907_108074943 | 3300020069 | Corn, Switchgrass And Miscanthus Rhizosphere | MLVALLGRGPAVLRAERLDPGGTRKRRQHAKDGITRMPSAVYKV |
| Ga0206356_113200241 | 3300020070 | Corn, Switchgrass And Miscanthus Rhizosphere | MLVALLGRGPAVLRDERLDPGETRMPRKHAKDGITRMPSAVYKV |
| Ga0206354_112440061 | 3300020081 | Corn, Switchgrass And Miscanthus Rhizosphere | MLVAMLGRGPAVLRDERLDPGETRMPRKHAKDGITRMPSAVYKV |
| Ga0210407_100417482 | 3300020579 | Soil | MLVVLLGLCPAVLRAERLDPCETRRCRQHIRDIRDSITRMPSPVYKV |
| Ga0210405_103322622 | 3300021171 | Soil | MLVVLLGLCPAVLRAERLDPCETRRCRQHIRDIRDGITRIPSPVYKV |
| Ga0210408_108875992 | 3300021178 | Soil | LREGSMLVVLLGLCPAVLRAERLDPCETRRCRQHIRDIRDGITRMPSPVYKV |
| Ga0210387_110975282 | 3300021405 | Soil | MLVALLGRGPAVLRAERLDPGGNRMPRQHAKDGITRMPSAVYKV |
| Ga0193694_10455261 | 3300021415 | Soil | AFMLVALLGRGPAVLRAERLDPGGTRKRRQHAKDGITRMPSAVYKV |
| Ga0210402_100432854 | 3300021478 | Soil | MLVVLLGPCPAVLRVERLDPCETRRCRQHIEDIRDGITRMPPPAYKV |
| Ga0210402_106274621 | 3300021478 | Soil | MLVVLLGLCPAVLRAERLDPCETRRCRQHIRDIRDGITRMPSPVYKV |
| Ga0210410_103815902 | 3300021479 | Soil | LREGSMLVVLLGLCPAVLRAERLDPCETRRCRQHIRDIRDSITRMPSPVYKV |
| Ga0222622_111135152 | 3300022756 | Groundwater Sediment | MLVALLGRGPAVLRAERLDPGGTRKRRQHTKDGVTRMPSAVYKV |
| Ga0207693_101143172 | 3300025915 | Corn, Switchgrass And Miscanthus Rhizosphere | MLVALPGRGPAVLRAERLDPGGTRMPRQHAEDGIARMPSAVCKV |
| Ga0207693_103698451 | 3300025915 | Corn, Switchgrass And Miscanthus Rhizosphere | MLVVLLGLCPAVLRAERLDPCETRRCRQHIRGIRDGITRVPSPVYKV |
| Ga0207689_105258441 | 3300025942 | Miscanthus Rhizosphere | MLVALLGRGPAVLRDERLDPGETRMPRKHAKDGITR |
| Ga0209239_13702051 | 3300026310 | Grasslands Soil | MLVALLGRGPAVLRAERLDPGGTRKRRQHTTDGITHMPSAVYKV |
| Ga0209178_12134722 | 3300027725 | Agricultural Soil | MLVALPGRGPAVLRAERLDPGGTRMPRQHAEDGIARMPSAVYKV |
| Ga0209074_100348171 | 3300027787 | Agricultural Soil | MLVALPGRGPAVLRAERLDPGGTRMPRQHAEDDIARMPSAVYKV |
| Ga0209656_100454092 | 3300027812 | Bog Forest Soil | MLVALPGRYPAVLRDKRLDSYGTRKYWHHTRDGITRMPSAIDKM |
| Ga0307307_101364062 | 3300028718 | Soil | MLVALLGRGPAVLRAERLDPGGTRKRRQHTKDGITRMPSAVYKV |
| Ga0307280_100831612 | 3300028768 | Soil | LREAFMLVALLGRGPAVLRAERLDPGGTRKRRQHAKDGITRMPSAVYKV |
| Ga0307498_100058872 | 3300031170 | Soil | MLVVLLGRGPAVLRAERLDPGGTRKRQQHTKDGITRMPSAVCKV |
| Ga0307495_100409062 | 3300031199 | Soil | MLVALLGRGPAVLRAERLDPGGTRKRQQHTKDGITRMPSAVYKV |
| Ga0170824_1034438861 | 3300031231 | Forest Soil | MLVALPGRYPAVLGDERLDPYGTRKYRHRTKDGIMRMPQAVDKM |
| Ga0170824_1210734001 | 3300031231 | Forest Soil | LREGSMAVVLLGLCPAVLRAERLDPCETRRCRQHIADIRDGITRMPSPVYKV |
| Ga0170819_120739671 | 3300031469 | Forest Soil | LREGSMAVVLLGLCPAVLRAERLDPCETRRCRQHIRDSRDGITRMPSPVYKV |
| Ga0170818_1131421812 | 3300031474 | Forest Soil | MAVVLLGLCPAVLRAERLDPCETRRCRQHIADIRDGITRMPLPVYKV |
| Ga0318534_103023521 | 3300031544 | Soil | LVALPGLCPAVLRAERLGPSGIRKCRQRTADGITCMPSAVDKV |
| Ga0318528_100816452 | 3300031561 | Soil | MLVALPGLCPAVLRAERLRVSGTRKCRRHTTDGTTRI |
| Ga0318555_105884261 | 3300031640 | Soil | MLVALPGLCPAVLTAERLDPSGTRNCRQRIRDGITRIPSAV |
| Ga0318542_105853501 | 3300031668 | Soil | VALPGLCPAVLRAERLRVSGTRKCRRHTTDGTTRIPSAVGKA |
| Ga0307469_107901051 | 3300031720 | Hardwood Forest Soil | RGPAVLRDERLDPGETRMPRKHAKDGITRMPSAVYKV |
| Ga0307468_1020765952 | 3300031740 | Hardwood Forest Soil | MLVALLGRGPAVLRDERLDPGETRMPRKHAKDGITRM |
| Ga0318502_102069912 | 3300031747 | Soil | MLVALPGLYPAVLRAERLDPSGTRNCQHTGDGITRMSSTVDKV |
| Ga0318565_100357282 | 3300031799 | Soil | MLVALPGLCPAVLRAERLGPSGIRKRRQHTADGITCMPSAVDKV |
| Ga0318495_103178342 | 3300031860 | Soil | MLVALPGLCPAVLRGKRLDPAGTGKRRPRTQDGLT |
| Ga0306925_102188672 | 3300031890 | Soil | MLVALPGLCPAVLRAERLGPSGIRKCRQRTADGITCMPSAVDKV |
| Ga0306921_104176822 | 3300031912 | Soil | LVALPGLCPAVLRAERLGPSGIRKCRQHTADGITRMPSAVDKV |
| Ga0310910_105209342 | 3300031946 | Soil | LVALPGLCPAVLRAERLGPSGIRKRRQHTADGITCMPSAVDKV |
| Ga0310909_101623162 | 3300031947 | Soil | MLVALPGLCPAVLRAERLGPSGIRKCRQRTADGITCMPS |
| Ga0308176_112089481 | 3300031996 | Soil | MLVALPGRGPAVLRAERLDPGGTRMPRQHAKDGITRMPSAVYKV |
| Ga0318562_100871482 | 3300032008 | Soil | MLVALPGLCPAVLRAERLGPSGIRKCRQHTADGITRMPSAVDKV |
| Ga0318562_103845312 | 3300032008 | Soil | MLVALPGLCPAVLTAERLDPAGTRKCRLRTGGGITRRPSAVSKV |
| Ga0318569_106268071 | 3300032010 | Soil | MLVALPGLYPAVLRAERLDPSGTRNCQHTGDGITRMSSTVDK |
| Ga0318514_101447482 | 3300032066 | Soil | SMLVALPGLCPAVLRAERLGPSGIRKRRQHTADGITCMPSAVDKV |
| Ga0306924_101116551 | 3300032076 | Soil | MLVALPGLCPAVLRAGQFDPSGARRCRQHTTNGITRI |
| Ga0306920_1007793622 | 3300032261 | Soil | RGSMLVALPGLCPAVLRAERLGPSGIRKCRQRTADGITCMPSAVDKV |
| Ga0335085_100785903 | 3300032770 | Soil | MLVALPGLCPAVLTAERLDPAGTRNCRLRTGGGITRIPSAVSKV |
| Ga0335085_101104474 | 3300032770 | Soil | MLVTLPGVCPAVLRAERLGPAGIRKCRQRTADGITRMPSAVDKV |
| Ga0335085_102142963 | 3300032770 | Soil | MLVALLGRGPAVLKAMRLDPGGTRKPRQHTKDGIMRMPSAI |
| Ga0335079_100094205 | 3300032783 | Soil | MLVALLGRGPAVLKAMRLDPGGTRKPRQHTKDGIMRMPSAICKV |
| Ga0335079_100139662 | 3300032783 | Soil | MLVALPGLCPAVLRGERLDPAGTGKCRPRTQDGITRSPSAVGKV |
| Ga0335078_100498142 | 3300032805 | Soil | MLVALPGLCPAVLRGERLDPAGSGKCRPRTQDGITRSPSAVGKV |
| Ga0335069_100495834 | 3300032893 | Soil | MLVALPGLCPAVLRAGQLDPSGTRRCRQHTTNGITRIPSAVGKV |
| Ga0335069_101058052 | 3300032893 | Soil | MLVALPGLCPAVLRAERLGPSGIRQCRQHTADGVTRMPSAVDKV |
| Ga0335072_101006852 | 3300032898 | Soil | MLVALLGRGPAVLRAERLDPGGTRMPRQHAKDGIMRMPSAVYKV |
| Ga0335083_109799211 | 3300032954 | Soil | MLVVLLGLCPAVLTAERLDPAGTRNCRLRTGGGITRIPSAVSKV |
| Ga0335076_100770832 | 3300032955 | Soil | MLFALPGVCPAVLRGERLDPAGTGERRPHTQDDLTRSPSAVGKV |
| Ga0335073_100968402 | 3300033134 | Soil | MLVALLGRGPAVLRAERLDPGETRMPRQHAKDGITRMPSAVYKV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |