Metagenome / Metatranscriptome Family F082951

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F082951
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	45 residues
Representative Sequence	TKSVASSFLAHVGYNGTLMVLAAVATDGFRHMEKAGVLLF
Number of Associated Samples	101
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.88 %
% of genes near scaffold ends (potentially truncated)	97.35 %
% of genes from short scaffolds (< 2000 bps)	92.04 %
Associated GOLD sequencing projects	96
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (92.035 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (14.159 % of family members)
Environment Ontology (ENVO)	Unclassified (28.319 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (60.177 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 44.12% β-sheet: 0.00% Coil/Unstructured: 55.88%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.52
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.52
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF00210	Ferritin	20.35
PF13426	PAS_9	6.19
PF03069	FmdA_AmdA	4.42
PF00156	Pribosyltran	3.54
PF00989	PAS	2.65
PF05580	Peptidase_S55	2.65
PF01797	Y1_Tnp	1.77
PF13481	AAA_25	0.88
PF02535	Zip	0.88
PF02548	Pantoate_transf	0.88
PF02224	Cytidylate_kin	0.88
PF07478	Dala_Dala_lig_C	0.88
PF01850	PIN	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG2421	Acetamidase/formamidase	Energy production and conversion [C]	4.42
COG1943	REP element-mobilizing transposase RayT	Mobilome: prophages, transposons [X]	1.77
COG0283	Cytidylate kinase	Nucleotide transport and metabolism [F]	0.88
COG0413	Ketopantoate hydroxymethyltransferase	Coenzyme transport and metabolism [H]	0.88
COG0428	Zinc transporter ZupT	Inorganic ion transport and metabolism [P]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	92.04 %
Unclassified	root	N/A	7.96 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	92.04 %
Unclassified	root	N/A	7.96 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	92.04 %
Unclassified	root	N/A	7.96 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	64.60 %
Unclassified	root	N/A	7.96 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.65 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	38.05 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	17.70 %
Unclassified	root	N/A	7.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.65 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	26.55 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	17.70 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	11.50 %
Unclassified	root	N/A	7.96 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.65 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	26.55 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	17.70 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	11.50 %
Unclassified	root	N/A	7.96 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.65 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	26.55 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	11.50 %
Unclassified	root	N/A	7.96 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.65 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	2.65 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	0.88 %
Terriglobus	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	26.55 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	11.50 %
Unclassified	root	N/A	7.96 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.65 %
Terriglobus roseus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus → Terriglobus roseus	0.88 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.88 %
Acidobacterium ailaaui	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium ailaaui	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001471\|JGI12712J15308_10169774	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	568	Open in IMG/M
3300004080\|Ga0062385_10593235	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	699	Open in IMG/M
3300004082\|Ga0062384_100474548	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	823	Open in IMG/M
3300004082\|Ga0062384_100593020	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	749	Open in IMG/M
3300004082\|Ga0062384_101392089	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	516	Open in IMG/M
3300004135\|Ga0058884_1319686	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus → Terriglobus roseus	544	Open in IMG/M
3300004476\|Ga0068966_1502803	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	776	Open in IMG/M
3300005534\|Ga0070735_10239590	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1102	Open in IMG/M
3300005555\|Ga0066692_10925339	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300005712\|Ga0070764_10008454	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	4959	Open in IMG/M
3300005712\|Ga0070764_10531711	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	710	Open in IMG/M
3300005712\|Ga0070764_10930067	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	546	Open in IMG/M
3300005921\|Ga0070766_10207100	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1229	Open in IMG/M
3300005921\|Ga0070766_10384449	All Organisms → cellular organisms → Bacteria	917	Open in IMG/M
3300006052\|Ga0075029_100476885	All Organisms → cellular organisms → Bacteria	821	Open in IMG/M
3300006176\|Ga0070765_101613306	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium ailaaui	610	Open in IMG/M
3300009090\|Ga0099827_11505866	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300009143\|Ga0099792_10110895	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1457	Open in IMG/M
3300009522\|Ga0116218_1220171	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	855	Open in IMG/M
3300009624\|Ga0116105_1029131	All Organisms → cellular organisms → Bacteria → Acidobacteria	1193	Open in IMG/M
3300009645\|Ga0116106_1010543	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3419	Open in IMG/M
3300009759\|Ga0116101_1050952	All Organisms → cellular organisms → Bacteria → Acidobacteria	891	Open in IMG/M
3300009764\|Ga0116134_1297160	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	555	Open in IMG/M
3300010339\|Ga0074046_10709212	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	591	Open in IMG/M
3300010341\|Ga0074045_10736939	All Organisms → cellular organisms → Bacteria	625	Open in IMG/M
3300010343\|Ga0074044_11167182	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300010379\|Ga0136449_102513533	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	738	Open in IMG/M
3300011120\|Ga0150983_12068615	All Organisms → cellular organisms → Bacteria	673	Open in IMG/M
3300011120\|Ga0150983_12199894	All Organisms → cellular organisms → Bacteria → Acidobacteria	1767	Open in IMG/M
3300011120\|Ga0150983_12630424	Not Available	2094	Open in IMG/M
3300011120\|Ga0150983_13257220	All Organisms → cellular organisms → Bacteria → Acidobacteria	1457	Open in IMG/M
3300011120\|Ga0150983_16144361	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	967	Open in IMG/M
3300011269\|Ga0137392_10573112	All Organisms → cellular organisms → Bacteria → Acidobacteria	937	Open in IMG/M
3300012359\|Ga0137385_11264511	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	600	Open in IMG/M
3300012930\|Ga0137407_11195563	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	722	Open in IMG/M
3300014169\|Ga0181531_10102285	All Organisms → cellular organisms → Bacteria → Acidobacteria	1712	Open in IMG/M
3300014201\|Ga0181537_10354216	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1007	Open in IMG/M
3300014498\|Ga0182019_10182446	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1348	Open in IMG/M
3300014657\|Ga0181522_10900576	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	545	Open in IMG/M
3300015193\|Ga0167668_1086427	All Organisms → cellular organisms → Bacteria	600	Open in IMG/M
3300017822\|Ga0187802_10239025	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	702	Open in IMG/M
3300017940\|Ga0187853_10067502	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1805	Open in IMG/M
3300017946\|Ga0187879_10570771	All Organisms → cellular organisms → Bacteria → Acidobacteria	628	Open in IMG/M
3300017970\|Ga0187783_11310689	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300018002\|Ga0187868_1304840	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	525	Open in IMG/M
3300018007\|Ga0187805_10104721	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1280	Open in IMG/M
3300018040\|Ga0187862_10305149	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1004	Open in IMG/M
3300018044\|Ga0187890_10620586	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	609	Open in IMG/M
3300018058\|Ga0187766_10591813	Not Available	756	Open in IMG/M
3300019182\|Ga0184598_130894	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300019284\|Ga0187797_1573547	All Organisms → cellular organisms → Bacteria	739	Open in IMG/M
3300019786\|Ga0182025_1010713	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	716	Open in IMG/M
3300019786\|Ga0182025_1088430	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	728	Open in IMG/M
3300019786\|Ga0182025_1262396	All Organisms → cellular organisms → Bacteria	1573	Open in IMG/M
3300020580\|Ga0210403_10028401	All Organisms → cellular organisms → Bacteria	4463	Open in IMG/M
3300020580\|Ga0210403_10244063	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1473	Open in IMG/M
3300021180\|Ga0210396_10738934	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	848	Open in IMG/M
3300021401\|Ga0210393_11153326	All Organisms → cellular organisms → Bacteria	625	Open in IMG/M
3300021403\|Ga0210397_11632504	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	500	Open in IMG/M
3300021404\|Ga0210389_10545274	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	912	Open in IMG/M
3300021405\|Ga0210387_10248454	All Organisms → cellular organisms → Bacteria → Acidobacteria	1556	Open in IMG/M
3300021420\|Ga0210394_11401804	All Organisms → cellular organisms → Bacteria	594	Open in IMG/M
3300021433\|Ga0210391_10621028	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	848	Open in IMG/M
3300021476\|Ga0187846_10322119	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300021478\|Ga0210402_10310096	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1462	Open in IMG/M
3300022508\|Ga0222728_1063003	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
3300022522\|Ga0242659_1001918	Not Available	2273	Open in IMG/M
3300022722\|Ga0242657_1026471	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1140	Open in IMG/M
3300023250\|Ga0224544_1010233	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1267	Open in IMG/M
3300024271\|Ga0224564_1139371	Not Available	500	Open in IMG/M
3300025414\|Ga0208935_1008165	All Organisms → cellular organisms → Bacteria → Acidobacteria	1456	Open in IMG/M
3300025922\|Ga0207646_10031150	All Organisms → cellular organisms → Bacteria	4830	Open in IMG/M
3300027117\|Ga0209732_1078268	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	576	Open in IMG/M
3300027648\|Ga0209420_1106552	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	793	Open in IMG/M
3300027676\|Ga0209333_1096425	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	807	Open in IMG/M
3300027696\|Ga0208696_1000312	All Organisms → cellular organisms → Bacteria → Acidobacteria	33448	Open in IMG/M
3300027729\|Ga0209248_10062341	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1138	Open in IMG/M
3300027829\|Ga0209773_10365123	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300027889\|Ga0209380_10232557	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1082	Open in IMG/M
3300027895\|Ga0209624_10932371	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	565	Open in IMG/M
3300027905\|Ga0209415_10450762	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1013	Open in IMG/M
3300028780\|Ga0302225_10179274	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1023	Open in IMG/M
3300028798\|Ga0302222_10204393	All Organisms → cellular organisms → Bacteria	773	Open in IMG/M
3300028873\|Ga0302197_10539662	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	506	Open in IMG/M
3300028906\|Ga0308309_11212221	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300029915\|Ga0311358_11087641	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	541	Open in IMG/M
3300029952\|Ga0311346_10069715	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4791	Open in IMG/M
3300030054\|Ga0302182_10078521	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1468	Open in IMG/M
3300030399\|Ga0311353_10619137	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	944	Open in IMG/M
3300030503\|Ga0311370_11687168	All Organisms → cellular organisms → Bacteria	651	Open in IMG/M
3300030520\|Ga0311372_11284231	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	927	Open in IMG/M
3300030528\|Ga0210277_10146207	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M
3300030580\|Ga0311355_10548543	All Organisms → cellular organisms → Bacteria	1100	Open in IMG/M
3300030618\|Ga0311354_10881698	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	836	Open in IMG/M
3300030730\|Ga0307482_1301495	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300030743\|Ga0265461_13147013	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300031057\|Ga0170834_108673782	Not Available	554	Open in IMG/M
3300031231\|Ga0170824_113230018	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	665	Open in IMG/M
3300031233\|Ga0302307_10597035	Not Available	556	Open in IMG/M
3300031234\|Ga0302325_11810665	All Organisms → cellular organisms → Bacteria	765	Open in IMG/M
3300031446\|Ga0170820_16462644	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	643	Open in IMG/M
3300031708\|Ga0310686_101910558	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1175	Open in IMG/M
3300031718\|Ga0307474_10996362	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	663	Open in IMG/M
3300031754\|Ga0307475_10783345	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	757	Open in IMG/M
3300031808\|Ga0316037_102967	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	988	Open in IMG/M
3300031823\|Ga0307478_10062841	All Organisms → cellular organisms → Bacteria	2785	Open in IMG/M
3300031837\|Ga0302315_10308047	Not Available	906	Open in IMG/M
3300031947\|Ga0310909_10194978	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1682	Open in IMG/M
3300032783\|Ga0335079_10988895	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	859	Open in IMG/M
3300033134\|Ga0335073_10472528	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1441	Open in IMG/M
3300033158\|Ga0335077_11257323	Not Available	721	Open in IMG/M
3300034163\|Ga0370515_0256978	Not Available	741	Open in IMG/M
3300034199\|Ga0370514_067601	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	903	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	80.53%
Aquatic	Environmental → Aquatic	19.47%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	66.37%
Freshwater	Environmental → Aquatic → Freshwater	18.58%
Peat	Environmental → Terrestrial → Peat	13.27%
Sediment	Environmental → Aquatic → Sediment	0.89%
Cave	Environmental → Terrestrial → Cave	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	35.40%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	18.58%
Loam	Environmental → Terrestrial → Soil → Loam	17.70%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	13.27%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	13.27%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.89%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	20.35%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	16.81%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.16%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	13.27%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	12.39%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	9.73%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	4.42%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	3.54%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.77%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.89%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.89%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.16%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	9.73%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	9.73%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	7.08%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	5.31%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	4.42%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	4.42%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.42%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.54%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.54%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	2.65%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.65%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.65%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	2.65%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	2.65%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	2.65%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.77%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.77%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.77%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.89%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.89%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.89%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.89%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.89%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.89%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001471	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004135	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF204 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004476	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 58 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009624	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10	Environmental	Open in IMG/M
3300009645	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40	Environmental	Open in IMG/M
3300009759	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_10	Environmental	Open in IMG/M
3300009764	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_40	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014498	Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300015193	Arctic soil microbial communities from a glacier forefield, Rabots glacier, Tarfala, Sweden (Sample Rb6, proglacial stream)	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017940	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018002	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_40	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300019182	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZE1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019284	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019786	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300022508	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-19-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022522	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022722	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300023250	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P1 10-14	Environmental	Open in IMG/M
3300024271	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU5	Environmental	Open in IMG/M
3300025414	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10 (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027117	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027648	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027676	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)	Environmental	Open in IMG/M
3300027696	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG (SPAdes)	Environmental	Open in IMG/M
3300027729	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027829	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300028780	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2	Environmental	Open in IMG/M
3300028798	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_2	Environmental	Open in IMG/M
3300028873	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N2_1	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029915	III_Bog_E1 coassembly	Environmental	Open in IMG/M
3300029952	II_Bog_N3 coassembly	Environmental	Open in IMG/M
3300030054	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_1	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030528	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO135-VCO084SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030743	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VCO Co-assembly	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031233	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_2	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031808	Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLE3 metaT (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031837	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_1	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300034163	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14	Environmental	Open in IMG/M
3300034199	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_01D_14	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12712J15308_101697742	3300001471	Forest Soil	VRAVTKSVASSFLAHVGYNATLMALAVWATDGFRHMDKAGVLLF*
Ga0062385_105932351	3300004080	Bog Forest Soil	AVRAMTKSVASSLLAHMGYNGTLMLLAALSTDGFKHMEKAGVLLF*
Ga0062384_1004745482	3300004082	Bog Forest Soil	TGSVASSFLVHVGYNATEMLIFAIATDGFRHMEKAGMLLF*
Ga0062384_1005930202	3300004082	Bog Forest Soil	TTVRAVTKSVGASFLVHVGYNGTLSALLLVATGGFRHLEKLNQ*
Ga0062384_1013920891	3300004082	Bog Forest Soil	VRAATKSVASSFLAHVGYNGTLMVLAAWTTDGFKHMEKAAVGLF*
Ga0058884_13196861	3300004135	Forest Soil	LIVFMVGVVLTAIRAMTKSVAASFLAHVGYNGTLMMLAAWSTDGFKHMEKAAMGLF*
Ga0068966_15028032	3300004476	Peatlands Soil	FLVGVVLTAVRAMTKSVAASFLAHVGYNGTLMMLAAWSTDGFKHMEKAGVLLF*
Ga0070735_102395902	3300005534	Surface Soil	SVAASFLVHVGYNGTLMVMAALATDGFRHMPKAAIFLP*
Ga0066692_109253392	3300005555	Soil	AVTKSVAASFLVHVSYNGTLMGLAALATDGFRHMEKAAVIRF*
Ga0070764_100084541	3300005712	Soil	VGVVLTTVRAVTKSVASSFLTHVGYNGTLMVLAALQTDGFRHMDKAASLAGWIK*
Ga0070764_105317111	3300005712	Soil	VTKSVASSFLAHVGYNAALMTLAAIATDGFRHMEKAGVWLF*
Ga0070764_109300671	3300005712	Soil	VASSFLVHVGYNATEMLLFAIATDGFRHMEKAGMVLF*
Ga0070766_102071001	3300005921	Soil	ESVAASFLVHVGYNGTEMFMLMLATDGFRHMEKVLK*
Ga0070766_103844492	3300005921	Soil	AVFIIVLVGIVLTTVRAVTKSVSSSFLAHVGYNATLMVLAAWATDGFRHMEKAGLALF*
Ga0075029_1004768851	3300006052	Watersheds	AVTKSVAASFLVHVGYNATLMVLAAVATDGFRHMEKATLTLQP*
Ga0070765_1016133062	3300006176	Soil	VVLATVRAMTKSVASSFLAHVGYNGTLMVIAALQTDGFRHMEKAAVLLF*
Ga0099827_115058662	3300009090	Vadose Zone Soil	VGVVLTAVRAVTKSVASSFLAHVGYNGTLMVLAAWATDGFRHMEKAGTLLLCR*
Ga0099792_101108952	3300009143	Vadose Zone Soil	FLVHVGYNGTLMFLAALATDGFRHMDKAGMFLWRF*
Ga0116218_12201713	3300009522	Peatlands Soil	LVGVVLTAVRAITKSVAASFLAHVGYNGTLMMLAAWSTDGFKHMEKAGVLLF*
Ga0116105_10291312	3300009624	Peatland	VLTTIRAVTKSVASSFLAHVGYNGTLMVLAAVATDGFRHMEKVGIVLF*
Ga0116106_10105436	3300009645	Peatland	VRAITKSVAASFLAHVGYNATLMVLAAWATDGFRHMDKAGVLLF*
Ga0116101_10509522	3300009759	Peatland	ASSFLAHVGYNGTLMVLAAVATDGFRHMEKVGIVLF*
Ga0116134_12971601	3300009764	Peatland	TKSVASSFLAHVGYNGTLMVLAAVATDGFRHMEKAGVLLF*
Ga0074046_107092121	3300010339	Bog Forest Soil	SFLVHVGYNGTEMFLLALATQGFQHMEKAVLSCLH*
Ga0074045_107369392	3300010341	Bog Forest Soil	GVVLTAVRAKTKSVASSFLAHVGYNGTLMVLAALQTDGFRHMEKAAVVLGWLNLTTRY*
Ga0074044_111671822	3300010343	Bog Forest Soil	GIVLTTVRAVTKSVASSFLAHIGYNGTLMVLAALQTDGFRHMDKAGVLLGWLGSN*
Ga0136449_1025135331	3300010379	Peatlands Soil	KSVAASFLAHVGYNATLMVLAAVATDGFRHMEKAGVLLF*
Ga0150983_120686152	3300011120	Forest Soil	LTAIRAVTGSVAASFLAHVGYNATLMMLTAAATGGFRHMDRFGLWLR*
Ga0150983_121998942	3300011120	Forest Soil	AVTKSVASSLLAHVGYNGTLMVLAAVATDGFRHMEKAGVLLF*
Ga0150983_126304241	3300011120	Forest Soil	KSVASSFLAHVGYNAALMTLAAIATDGFRQMEKAGVWLF*
Ga0150983_132572203	3300011120	Forest Soil	GVVLTTVRAVTKSVASSFLTHVGYNGTLMVLAALQTDGFRHMDKAGVLLGWLGSN*
Ga0150983_161443612	3300011120	Forest Soil	VLVGVVLTLVRAVTKSVAASFLVHVGYNATLMFFAALATDGFRHMEKAGVGLF*
Ga0137392_105731123	3300011269	Vadose Zone Soil	VTKSVAASFLVHVGYNGTLMFLAALATDGFRHMDKAGMFLWRF*
Ga0137385_112645112	3300012359	Vadose Zone Soil	VTRSVAASFLVHVGYNATVTIIALIATGGFRHMEKMNQ*
Ga0137407_111955631	3300012930	Vadose Zone Soil	TTVRAVTKSVAASFLVHIGYNGILMAAAAVATDGFRHMDKAGVALF*
Ga0181531_101022852	3300014169	Bog	AIRAATKSVASSFLAHIGYNGTLMVIAALQTDGFRHMEKAAVLLPYLNLGTRY*
Ga0181537_103542161	3300014201	Bog	IVLVGVVLTAIRAITKSVASSFLAHVGYNGTLMVLAALQTDGFRHMEKAGVALF*
Ga0182019_101824462	3300014498	Fen	TVVRAVTKSVAASFLVHVGYNATLMTLAALATDGFRHMEKVAVGQLYLR*
Ga0181522_109005762	3300014657	Bog	SVASSFLAHVGYNGTLMLLAAVATGGFKHMEKASLLLAR*
Ga0167668_10864272	3300015193	Glacier Forefield Soil	VRAVTGSVAASFLAHVGYNATLMMLTAAATGGFRHMDRLGLWLAYL*
Ga0187802_102390251	3300017822	Freshwater Sediment	IRETTKSVAASFLVHVGYNGTLMALAAIATDGFRHMEKAVLVGS
Ga0187853_100675021	3300017940	Peatland	VVLTTVRAVTKSVASSFLAHVGYNGTLMVLAAVATDGFRHMEKAGVLLF
Ga0187879_105707712	3300017946	Peatland	LIIMMVGVVLTAVRAITKSVASSFLAHVGYNTTLMILAAWATDGFRHMEKAGFVLNVWF
Ga0187783_113106891	3300017970	Tropical Peatland	VVLTTVRAVTKSVASSFLAHIGYNATLMVLAIVATDGFRHMEKAGVFMKY
Ga0187868_13048401	3300018002	Peatland	ASFLAHVGYNATLMVLAAWATDGFRHMDKAGVLLF
Ga0187805_101047212	3300018007	Freshwater Sediment	MTKSVSASFLVHVGYNGTLMALAAVATDGFRHMEKASIVDCFLR
Ga0187862_103051492	3300018040	Peatland	AMTKSVAASFLVHVGYNGTLMTLAAVATDGFRHMEKALIQLSVHLS
Ga0187890_106205862	3300018044	Peatland	AKTKSVASSFLAHVGYNTTLMLLAASQTDGFRHMEKAAAFLF
Ga0187766_105918131	3300018058	Tropical Peatland	TAVRAVTKSVAASFLVHVGYNGTLSTLLVVATDGFRHLEKLNS
Ga0184598_1308942	3300019182	Soil	VASSFLAHVGYNGTLMVLAALQTDGFRHMDKAGVLLGWLRSS
Ga0187797_15735471	3300019284	Peatland	IVCLVGVVLTSIRAATKSVASSFLAHVGYNATLMVLAAIQTDGFRHMEKAAFLS
Ga0182025_10107131	3300019786	Permafrost	AMTKSAVASSFLAHVGYNGTLMVLAAVATDGFRHMDKAGFFLFRL
Ga0182025_10884301	3300019786	Permafrost	RSGRCGVVLTTVRAVTKSVASSFLAHVGYNATLMALAAWATDGFRHMEKAGVLLF
Ga0182025_12623963	3300019786	Permafrost	LIIVLVGVVLTTVRAVTKSVASSFLAHVGYNATLMALAAWATDGFRHMEKAGVLLF
Ga0210403_100284011	3300020580	Soil	VTKSVASSFLAHVGYNGIQMILAIWATDGFRHMEKAGLLLLWR
Ga0210403_102440632	3300020580	Soil	LVGVVLTTVRAVTKSVASSLLAHVGYNGTLMVLAAVATDGFRHMEKAGVLLF
Ga0210396_107389342	3300021180	Soil	FLAHVGYNGTLMVLAALQTDGFRHMDKAGILLGWAVN
Ga0210393_111533261	3300021401	Soil	VRAVTKSVASSFLAHVGYNGTLMVLAALATDGFKHMEKAGIVLF
Ga0210397_116325042	3300021403	Soil	MAVAFTVVRAKTGSVAASFLVHVGYNATEMFLFALATDGFRHMEKAGMLIR
Ga0210389_105452741	3300021404	Soil	IVRWKTESVAASFLVHVGYNGTEMFMLMLATDGFRHMEKVLR
Ga0210387_102484541	3300021405	Soil	TVRAVTKSVASSFLAHVGYNGTLMVLAALQTDGFRHMDKAGVLLGWH
Ga0210394_114018042	3300021420	Soil	SFLAHVGYNGTLMVLAALQTDGFRHMDKAGILLGWAVN
Ga0210391_106210281	3300021433	Soil	SSFLAHVGYNGTLMVIAALQTDGFRHMEKAGVWLF
Ga0187846_103221192	3300021476	Biofilm	VASSFLAHVGYNGTLMVLAALQTDGFRHMEKAVSMVRF
Ga0210402_103100962	3300021478	Soil	VAASFLVHVGYNGTLMALAALLTDGFRHMPKAAAGLVFLL
Ga0222728_10630032	3300022508	Soil	AATKSVASSFLAHVGYNGTLMVLAALQTDGFRHMEKAAVLLAYLKLGTG
Ga0242659_10019181	3300022522	Soil	VLTAVRARTKSVASSFLAHVGYNATLMILAALQTDGFRHMDKAGFALLR
Ga0242657_10264711	3300022722	Soil	TKSVASSFLAHVGYNGTLMVLAAWSTDGFKHMEKAGVLLGYLRG
Ga0224544_10102331	3300023250	Soil	VASSFLAHVGYNGTLMVLAAWSTDGFKHMEKAAVGLF
Ga0224564_11393712	3300024271	Soil	VLVGVVLTTIRAVTKSVGSSFLAHVGYNGTLMVLAAVATDGFKHMDKAGMLLF
Ga0208935_10081651	3300025414	Peatland	VLTTIRAVTKSVASSFLAHVGYNGTLMVLAAVATDGFRHMEKVGIVLF
Ga0207646_100311506	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	VTKSVAASFLVHVGYNGTLMFLAALATDGFRHMDKAGMLLF
Ga0209732_10782682	3300027117	Forest Soil	RAKTGSVAASFLVHVGYNATEMFLFALATDGFRHMEKAGMLIR
Ga0209420_11065522	3300027648	Forest Soil	KSVAASFLAHVGYNGTLMVLAAVATDGFRHMEKVGVVLF
Ga0209333_10964251	3300027676	Forest Soil	AATKSVASSFLTHVGYNGTLMVLAALQTDGFRHMDKAGALLGWLGSN
Ga0208696_100031226	3300027696	Peatlands Soil	VLTVVRAVTKSVAASFVVHVGYNATLMVLTAAATGGFHHMEKATMLTVGL
Ga0209248_100623411	3300027729	Bog Forest Soil	RAVTKSVASSFLAHVGYNGTLMVLAALQTDGFRHMEKAALGLF
Ga0209773_103651232	3300027829	Bog Forest Soil	TVRAVTKSVASSFLAHVGYNGTLMVLAALQTDGFRHMEKAALGLF
Ga0209380_102325571	3300027889	Soil	ESVAASFLVHVGYNGTEMFMLMLATDGFRHMEKVLK
Ga0209624_109323712	3300027895	Forest Soil	TTVRAVTKSVASSFLAHVGYNATLMALAVWATDGFRHMDKAGVLLF
Ga0209415_104507622	3300027905	Peatlands Soil	KSVASSFLAHVGYNGTLMVLAAWQTDGFRHMDKAGVLLGWLRFVTRY
Ga0302225_101792741	3300028780	Palsa	VVCTAVRAATGSVASSFLVHVGYNATEMLLFAVATDGFRHMEKAGMVLF
Ga0302222_102043932	3300028798	Palsa	RTKSVAASFLAHVGYNGTLMALAAWSSDGFKHMEKAAISLF
Ga0302197_105396621	3300028873	Bog	VASSFLAHVGYNGTLMILAAVATDGFRHMEKAGVLLF
Ga0308309_112122211	3300028906	Soil	VVLATVRAMTKSVASSFLAHVGYNGTLMVIAALQTDGFRHMEKAAVLLF
Ga0311358_110876412	3300029915	Bog	ASSFLAHVGYNGTLMILAAVATDGFRHMEKAGVLLF
Ga0311346_100697156	3300029952	Bog	VTKSVASSFLAHVGYNGTLMILAAVATDGFRHMEKAGVLLF
Ga0302182_100785211	3300030054	Palsa	KSVAASFLAHVGYNGTLMALAAWSSDGFKHMEKAAISLF
Ga0311353_106191371	3300030399	Palsa	VLTAVRARTKSVAASFLAHVGYNGTLMALAAWSSDGFKHMEKAAISLF
Ga0311370_116871682	3300030503	Palsa	TKSVAASFLAHVGYNGTLMALAAWSSDGFKHMEKAAISLF
Ga0311372_112842312	3300030520	Palsa	KSVAASFLVHVGYNGMLMVLIGVATDGFRHMEKVALVVF
Ga0210277_101462072	3300030528	Soil	VCLVGVVLTTVRAMTKSVASSFLAHVGYNGTLMVLAALQTDGFRHMEKAGVLLGWLGFELGTRY
Ga0311355_105485431	3300030580	Palsa	AVRASTGSVAASFLVHVAYNATDMLLIGAATGGFRHMEKAAIMIGRFLH
Ga0311354_108816982	3300030618	Palsa	IVRAVTKSVAASFLVHVGYNGMLMVLIGVATDGFRHMEKVALVVF
Ga0307482_13014951	3300030730	Hardwood Forest Soil	KTKSVASSFLAHVGYNGTLMVLAAVATDGFRHMDKAGVLLTLVKN
Ga0265461_131470131	3300030743	Soil	LIVCLVGVVLTTVRAITKSVASSFLAHVGYNATLMVLAAVATDGFRHMEKAGALLFGWV
Ga0170834_1086737822	3300031057	Forest Soil	VLTAVRAMTKSVAASFLAHAGYNATLMALVAWSTDGFKHMEKAAMGLF
Ga0170824_1132300182	3300031231	Forest Soil	AASFLVHVGYNGTLMGLAALATDGFRHMEKAAVVLR
Ga0302307_105970351	3300031233	Palsa	GVVLTAVRARTKSVASSFLTHVGYNTTLMFLAALQTDGFRHMEKAAVLLF
Ga0302325_118106651	3300031234	Palsa	ASSFLAHVGYNGTLMVLAALQTDGFRHMEKAAVLLF
Ga0170820_164626441	3300031446	Forest Soil	KSVAASFLVHVGYNGTLMALAAVATDGFRHMEKAAIVGFCVR
Ga0310686_1019105581	3300031708	Soil	TTVRAITKSVASSFLAHVGYNATLMVLAAVATDGFRHMEKAGALLFGWV
Ga0307474_109963621	3300031718	Hardwood Forest Soil	IRAVTKSVASSFLAHVGYNGIQMILAIWATDGFRHMEKAGFLLLRR
Ga0307475_107833452	3300031754	Hardwood Forest Soil	TKSVASSFLAHVGYNGTLMVLAAVATDGFRHMDKAGVLLTLVKN
Ga0316037_1029672	3300031808	Soil	VGVVLTTVRAVTKAVASSFLAHVGYNGTLMILAAVATDGFKHMEKAGVLLF
Ga0307478_100628413	3300031823	Hardwood Forest Soil	TKSVAASFLVHVGYNGMQMIIAVVATHGFRHMEKAFVWIR
Ga0302315_103080472	3300031837	Palsa	MTKSVAASFLAHVGYNGTLMALAVWSTDGFRHMDKAGALLF
Ga0310909_101949783	3300031947	Soil	VTKSVAASFLVHVGYNGTLSMLLVVATGGFHHLEKLNS
Ga0335079_109888952	3300032783	Soil	TIVRAASGSVGASFLVHVGYNGTLMMITALATDGFRHMQKAP
Ga0335073_104725281	3300033134	Soil	GIVVTIVRAKTGSVAASFLVHVGYNATEMFALLLATDGFRHMEKAALG
Ga0335077_112573231	3300033158	Soil	KSVAASFLVHVGYNGTLSTLLVVATDGFRHLQKLNS
Ga0370515_0256978_622_735	3300034163	Untreated Peat Soil	VASSFLAHVGYNVTLMALAAWATDGFRHMEKAGVLLF
Ga0370514_067601_31_216	3300034199	Untreated Peat Soil	VLIVFLVGVVLAAVRAMTKSVAASFLAHVGYNGTLMALAAWSTDGFKHMDKVGVLLVYLR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F082951

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences