Metagenome / Metatranscriptome Family F082938

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F082938
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	67 residues
Representative Sequence	MPTSDDYRQMANRAAQIAIGCSAPSVARALLALALAYMALADGVSPPTVEREQQLQEMQEDPAGYGD
Number of Associated Samples	76
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	82.30 %
% of genes near scaffold ends (potentially truncated)	20.35 %
% of genes from short scaffolds (< 2000 bps)	87.61 %
Associated GOLD sequencing projects	72
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (54.867 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (18.584 % of family members)
Environment Ontology (ENVO)	Unclassified (31.858 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (49.558 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 64.18% β-sheet: 0.00% Coil/Unstructured: 35.82%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF04392	ABC_sub_bind	21.24
PF13581	HATPase_c_2	7.08
PF03401	TctC	2.65
PF00072	Response_reg	1.77
PF00027	cNMP_binding	1.77
PF13493	DUF4118	1.77
PF00873	ACR_tran	1.77
PF06411	HdeA	1.77
PF00589	Phage_integrase	0.88
PF02566	OsmC	0.88
PF07045	DUF1330	0.88
PF12706	Lactamase_B_2	0.88
PF14023	DUF4239	0.88
PF13185	GAF_2	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	21.24
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	2.65
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	0.88
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	0.88
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	54.87 %
Unclassified	root	N/A	45.13 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	54.87 %
Unclassified	root	N/A	45.13 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	54.87 %
Unclassified	root	N/A	45.13 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	49.56 %
Unclassified	root	N/A	45.13 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	46.02 %
Unclassified	root	N/A	45.13 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.13 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	15.04 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	8.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.13 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	7.08 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	7.08 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.13 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	7.08 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	7.08 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.13 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	7.08 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1.77 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	1.77 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.13 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	7.08 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1.77 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1.77 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.77 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2228664021\|ICCgaii200_c0953858	Not Available	755	Open in IMG/M
3300000041\|ARcpr5oldR_c010296	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	796	Open in IMG/M
3300001431\|F14TB_101564911	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	583	Open in IMG/M
3300003911\|JGI25405J52794_10103272	Not Available	637	Open in IMG/M
3300004157\|Ga0062590_100549469	Not Available	1000	Open in IMG/M
3300004281\|Ga0066397_10031933	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	859	Open in IMG/M
3300004480\|Ga0062592_101245304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	699	Open in IMG/M
3300004633\|Ga0066395_10594225	Not Available	648	Open in IMG/M
3300005332\|Ga0066388_100053021	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4196	Open in IMG/M
3300005332\|Ga0066388_100940972	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1436	Open in IMG/M
3300005332\|Ga0066388_101424768	Not Available	1205	Open in IMG/M
3300005332\|Ga0066388_103184966	All Organisms → cellular organisms → Bacteria	838	Open in IMG/M
3300005332\|Ga0066388_104367394	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	720	Open in IMG/M
3300005332\|Ga0066388_104931102	Not Available	678	Open in IMG/M
3300005332\|Ga0066388_107575056	Not Available	544	Open in IMG/M
3300005335\|Ga0070666_10774498	All Organisms → cellular organisms → Bacteria → Proteobacteria	706	Open in IMG/M
3300005338\|Ga0068868_102273495	Not Available	517	Open in IMG/M
3300005341\|Ga0070691_11050283	Not Available	511	Open in IMG/M
3300005564\|Ga0070664_101191185	Not Available	718	Open in IMG/M
3300005713\|Ga0066905_101017966	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	731	Open in IMG/M
3300005713\|Ga0066905_101603375	Not Available	595	Open in IMG/M
3300005713\|Ga0066905_101986248	Not Available	539	Open in IMG/M
3300005713\|Ga0066905_102066774	Not Available	529	Open in IMG/M
3300005718\|Ga0068866_10996792	Not Available	595	Open in IMG/M
3300005764\|Ga0066903_100944935	All Organisms → cellular organisms → Bacteria → Proteobacteria	1567	Open in IMG/M
3300005764\|Ga0066903_101323702	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1347	Open in IMG/M
3300005764\|Ga0066903_105579852	Not Available	662	Open in IMG/M
3300005764\|Ga0066903_106900911	Not Available	589	Open in IMG/M
3300005764\|Ga0066903_107317990	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300005937\|Ga0081455_10033802	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4589	Open in IMG/M
3300005937\|Ga0081455_10047852	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3699	Open in IMG/M
3300005937\|Ga0081455_10057332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3301	Open in IMG/M
3300005937\|Ga0081455_10103990	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2273	Open in IMG/M
3300005983\|Ga0081540_1084831	All Organisms → cellular organisms → Bacteria → Proteobacteria	1412	Open in IMG/M
3300005983\|Ga0081540_1164694	Not Available	854	Open in IMG/M
3300006038\|Ga0075365_10108832	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1903	Open in IMG/M
3300006038\|Ga0075365_10339144	All Organisms → cellular organisms → Bacteria	1059	Open in IMG/M
3300006051\|Ga0075364_10078954	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2174	Open in IMG/M
3300006177\|Ga0075362_10101699	Not Available	1345	Open in IMG/M
3300006186\|Ga0075369_10584217	Not Available	534	Open in IMG/M
3300006844\|Ga0075428_100154175	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2495	Open in IMG/M
3300006844\|Ga0075428_100378121	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1518	Open in IMG/M
3300006844\|Ga0075428_101310483	Not Available	761	Open in IMG/M
3300006845\|Ga0075421_100551724	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1362	Open in IMG/M
3300006845\|Ga0075421_100664686	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1216	Open in IMG/M
3300006845\|Ga0075421_102473182	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	542	Open in IMG/M
3300006852\|Ga0075433_11407695	Not Available	603	Open in IMG/M
3300006853\|Ga0075420_100396421	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1194	Open in IMG/M
3300006871\|Ga0075434_101526321	Not Available	677	Open in IMG/M
3300006880\|Ga0075429_101144007	Not Available	680	Open in IMG/M
3300006969\|Ga0075419_10255062	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1173	Open in IMG/M
3300009094\|Ga0111539_10413007	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1572	Open in IMG/M
3300009094\|Ga0111539_11119716	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	915	Open in IMG/M
3300009094\|Ga0111539_11282647	Not Available	850	Open in IMG/M
3300009094\|Ga0111539_12884827	Not Available	556	Open in IMG/M
3300009147\|Ga0114129_10875797	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1140	Open in IMG/M
3300009147\|Ga0114129_11189968	Not Available	950	Open in IMG/M
3300009162\|Ga0075423_11142326	Not Available	830	Open in IMG/M
3300010043\|Ga0126380_11757011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	559	Open in IMG/M
3300010047\|Ga0126382_10219466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1369	Open in IMG/M
3300010047\|Ga0126382_10702737	Not Available	848	Open in IMG/M
3300010047\|Ga0126382_11069216	Not Available	713	Open in IMG/M
3300010360\|Ga0126372_10583405	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1069	Open in IMG/M
3300010362\|Ga0126377_10190321	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1959	Open in IMG/M
3300010362\|Ga0126377_10516915	Not Available	1228	Open in IMG/M
3300010366\|Ga0126379_12317468	Not Available	637	Open in IMG/M
3300010376\|Ga0126381_102347307	Not Available	766	Open in IMG/M
3300012212\|Ga0150985_109358470	Not Available	545	Open in IMG/M
3300012948\|Ga0126375_10249489	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1201	Open in IMG/M
3300012948\|Ga0126375_10679584	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	798	Open in IMG/M
3300012951\|Ga0164300_10493999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	698	Open in IMG/M
3300012958\|Ga0164299_10132811	Not Available	1350	Open in IMG/M
3300012985\|Ga0164308_10634247	Not Available	913	Open in IMG/M
3300012987\|Ga0164307_10025635	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3119	Open in IMG/M
3300012988\|Ga0164306_10084390	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2029	Open in IMG/M
3300013105\|Ga0157369_11915413	Not Available	602	Open in IMG/M
3300014325\|Ga0163163_11428772	Not Available	753	Open in IMG/M
3300015371\|Ga0132258_10120800	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6226	Open in IMG/M
3300015371\|Ga0132258_10519677	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2980	Open in IMG/M
3300015371\|Ga0132258_11143248	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1968	Open in IMG/M
3300015371\|Ga0132258_11780930	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1552	Open in IMG/M
3300015371\|Ga0132258_12046252	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1440	Open in IMG/M
3300015372\|Ga0132256_101228562	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	863	Open in IMG/M
3300015372\|Ga0132256_102451415	All Organisms → cellular organisms → Bacteria → Proteobacteria	624	Open in IMG/M
3300015374\|Ga0132255_103665743	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M
3300017792\|Ga0163161_10163733	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1697	Open in IMG/M
3300018000\|Ga0184604_10325098	Not Available	545	Open in IMG/M
3300018027\|Ga0184605_10526107	Not Available	512	Open in IMG/M
3300018051\|Ga0184620_10240247	Not Available	607	Open in IMG/M
3300019361\|Ga0173482_10770110	Not Available	506	Open in IMG/M
3300019875\|Ga0193701_1036667	All Organisms → cellular organisms → Bacteria	1005	Open in IMG/M
3300020001\|Ga0193731_1167363	Not Available	529	Open in IMG/M
3300021078\|Ga0210381_10009034	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2355	Open in IMG/M
3300022694\|Ga0222623_10412495	Not Available	513	Open in IMG/M
3300025903\|Ga0207680_10681910	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	736	Open in IMG/M
3300025934\|Ga0207686_11596149	Not Available	539	Open in IMG/M
3300025935\|Ga0207709_11234671	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	616	Open in IMG/M
3300026067\|Ga0207678_10045708	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3786	Open in IMG/M
3300026121\|Ga0207683_10276060	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1536	Open in IMG/M
3300027873\|Ga0209814_10465837	Not Available	558	Open in IMG/M
3300027909\|Ga0209382_10350991	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1652	Open in IMG/M
3300027909\|Ga0209382_11344363	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	721	Open in IMG/M
3300028787\|Ga0307323_10192678	Not Available	736	Open in IMG/M
3300028793\|Ga0307299_10232835	Not Available	692	Open in IMG/M
3300031114\|Ga0308187_10387539	Not Available	549	Open in IMG/M
3300031720\|Ga0307469_10070922	All Organisms → cellular organisms → Bacteria	2309	Open in IMG/M
3300031740\|Ga0307468_100226492	Not Available	1291	Open in IMG/M
3300031740\|Ga0307468_100747796	Not Available	825	Open in IMG/M
3300031820\|Ga0307473_10113433	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1472	Open in IMG/M
3300032174\|Ga0307470_10466996	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	912	Open in IMG/M
3300032180\|Ga0307471_103152100	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	585	Open in IMG/M
3300032205\|Ga0307472_102653060	Not Available	511	Open in IMG/M
3300034819\|Ga0373958_0047381	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	898	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	50.44%
Host-Associated	Host-Associated	49.56%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	49.56%
Terrestrial	Environmental → Terrestrial	46.02%
Aquatic	Environmental → Aquatic	4.42%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	46.02%
Rhizosphere	Host-Associated → Plants → Rhizosphere	27.43%
Rhizoplane	Host-Associated → Plants → Rhizoplane	16.81%
Roots	Host-Associated → Plants → Roots	5.31%
Sediment	Environmental → Aquatic → Sediment	3.54%
Freshwater	Environmental → Aquatic → Freshwater	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	28.32%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	21.24%
Loam	Environmental → Terrestrial → Soil → Loam	17.70%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	7.08%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.19%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	4.42%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.54%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.89%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.89%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	21.24%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.47%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	15.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	7.08%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.19%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.19%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	4.42%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.54%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.77%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.89%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.89%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.89%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.89%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	18.58%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	15.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.73%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.73%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.19%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	6.19%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	6.19%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	4.42%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.77%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.77%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.77%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.77%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.77%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.89%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.89%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.89%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000041	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis cpr5 old rhizosphere	Host-Associated	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004281	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006051	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4	Host-Associated	Open in IMG/M
3300006177	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2	Host-Associated	Open in IMG/M
3300006186	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019875	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s2	Environmental	Open in IMG/M
3300020001	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a2	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300034819	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_1	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICCgaii200_09538582	2228664021	Soil	MPTSEDYRQMANRTAQIAIACSAPSVAXALLALAVEYMALADGLSPRAFATEQQLQEMQQDPVGFGD
ARcpr5oldR_0102962	3300000041	Arabidopsis Rhizosphere	MPTSEDYRQMANRTAQIAIACSAPSVAGALLALAVEYMALADGLNPRAFAAEQQLQEMQQDPVGYGD*
F14TB_1015649112	3300001431	Soil	MPTSEDYRQLANRTAQIAIACSAPSVAAALLALALEYMALADGLSPPVFAKEQQLQEMQQDPVGFGD*
JGI25405J52794_101032722	3300003911	Tabebuia Heterophylla Rhizosphere	HRGGRAMPTSEDYRQMANRAAQIAIACSAPSVAGALLALALEYMALADGLSRPVVEKERQLQEMQQDPAGFGD*
Ga0062590_1005494691	3300004157	Soil	MPTSDDYRQMANRAAQIAIGCSAPSVARALLALALTYMALADGVSQPTVKREQQLQEMQEDPAGYGD*
Ga0066397_100319332	3300004281	Tropical Forest Soil	MPTSEDYRQMANRTAQIAIACSAPSVAGALLALAVEYMALADGLNPRAFATEQQLQEMQQDPV*
Ga0062592_1012453042	3300004480	Soil	MPTSDDYRQMANRAAQIAIGCSAPSVARALLALALTYMALADGVSQPTVEREIVKQLQEMQEDPAGYGD*
Ga0066395_105942251	3300004633	Tropical Forest Soil	MRQIADWGVEGRAMPTSDDYRQMANRAAQIAIGCSAPSVARALLALALAYMALADGIGPPTVDREQQQQEMQEDPAGYGD*
Ga0066388_1000530214	3300005332	Tropical Forest Soil	MPSFEDYRRMADRAAQLAIACSAPSVAGALLALAVEYMALADRLGQSAVAKEQQLQEMQQDPAGFGD*
Ga0066388_1009409722	3300005332	Tropical Forest Soil	MPTSDDYRQMANRAAQIAIGCSAPSVARALLALALTYMALADAVSSPTVEREQQQQEMQEDPAGYGD*
Ga0066388_1014247682	3300005332	Tropical Forest Soil	MPTSDDYRQIANRAAQIAIACSAPSVARALLALALTYMALADAVSPPTVEREQQLQEMQEDPAGYGD*
Ga0066388_1031849662	3300005332	Tropical Forest Soil	MPTSEDYRQLANRTAQIAIACSAPSVAAALLALALEYMALADGLSPPVLAKEQQLQEMQQDPVGFGD*
Ga0066388_1043673941	3300005332	Tropical Forest Soil	EGRAMPTSDDYRQMANRAAQIAIGCSAPSVARALLALALAYMALADGVSPPTVERERQLQEMQEDPAGYGD*
Ga0066388_1049311022	3300005332	Tropical Forest Soil	MPTSDDYRQMANRAAQIAIGCSAPSVARALLALALAYMALADGVSPPTVEREQQLQEMQEDPAGYGD*
Ga0066388_1075750562	3300005332	Tropical Forest Soil	MANRTAQIAIACSAPSVAGALLALAVEYMALADGLNPRPFATEQQLQEISKILSASEISF
Ga0070666_107744982	3300005335	Switchgrass Rhizosphere	MPTSDDYRQMANRAAQIAIGCSAPSVARALLALALTYMALADGISQPTVEREKQLQEMQENPAGYGD*
Ga0068868_1022734951	3300005338	Miscanthus Rhizosphere	MPTSDDYRQMANRAAQIAIGCSAPSVARALLGLALTYMALADGVSQPTVEREQQLQEMQEDPAGYGD*
Ga0070691_110502831	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MPTSDDYRQMANRAAQIAIGCSAPSVARALLALALTYMALADGVSQPTVEREQQLREMQEDPAGYGD*
Ga0070664_1011911852	3300005564	Corn Rhizosphere	MPTSDDYRQMANRAAQIAIGCSAPSVARALLALALTHMALADGISQPTVEREKQLQKMQEDPAGYGD*
Ga0066905_1010179661	3300005713	Tropical Forest Soil	YRQMANRAAQIAIACSAPSVAGALLALALEYMALADGLSPPALAKEQQLQEMQHDPVGYGD*
Ga0066905_1016033751	3300005713	Tropical Forest Soil	MPTSDDYRQMANRAAQIAIGCSAPSVARALLALALAYMALADGIGPPTVDREQQQQEMQEDPAGYGD*
Ga0066905_1019862481	3300005713	Tropical Forest Soil	MPTSDDYRQMANRAAQIAIGCSAPSVARALLALALAYMALADGVSSPMVEREQQLQEMQEDPAGYGD*
Ga0066905_1020667742	3300005713	Tropical Forest Soil	DYRQMANRTAQIAIACSAPSVAGALLALAVEYMALADGLSPRAFATEQQLQEMQQDPVGFGD*
Ga0068866_109967921	3300005718	Miscanthus Rhizosphere	MPTSDDYRQMANRAAQIAIGCSAPSVARALLALALTYMALAEGVGQQTVEREQQLQEMQEDPAGYGD*
Ga0066903_1009449352	3300005764	Tropical Forest Soil	MPTSDDYRQMANRAAQIAIGCSAPSVARALLALALTYMALADAVSSPTVEREQQQQEMQEDPAG
Ga0066903_1013237022	3300005764	Tropical Forest Soil	MPTSEDYRQMANRTAQIAIACSAPSVAGALLALAVEYMALADGLNPRAFATEQQLQEMQQDPVGFGD*
Ga0066903_1055798521	3300005764	Tropical Forest Soil	MPTSEDYTQIANRAAKIAIACSAPSVAAALLALALEYMALADGLSRPGIAQEQQLQETQQDPMGYGD*
Ga0066903_1069009112	3300005764	Tropical Forest Soil	MPTSDDYRQMANRAAQIAIGCSAPSVARALLALALTYMALADAVSPPTVEREQQLQEMQEDPAGYGD*
Ga0066903_1073179902	3300005764	Tropical Forest Soil	MPTPDDYRQMADRAVQIAIGCSAPSVARALLALALTYMALADAVSAPTVEREQQLQEMQEDPAGYGD*
Ga0081455_100338024	3300005937	Tabebuia Heterophylla Rhizosphere	MPTSDDYRQMANRAAQIAIGCSAPSVARALLALALAYMALADGVSPPTVERERQLQEMQEDPAGYGD*
Ga0081455_100478522	3300005937	Tabebuia Heterophylla Rhizosphere	MPTFEDYRQMADRAAQLAIACSAPSIAGALLALAVEYMTLAERLGQSAVAKQQQLQEMQQDPAGFGD*
Ga0081455_100573322	3300005937	Tabebuia Heterophylla Rhizosphere	MPTSEDYRQLANRTAQIAIACSAPSVAAALLALALEYMALADGLSPPFFAKEQQLQEMQQDPVGFGD*
Ga0081455_101039903	3300005937	Tabebuia Heterophylla Rhizosphere	RQMADRAAQIAIACSAPSVAGALLALALEYMALADRLSRPVLEKEQQLEEMQQDPAGYGD
Ga0081540_10848313	3300005983	Tabebuia Heterophylla Rhizosphere	MPTSDDYRQMANRAAQIAIGCSAPSVARALLALALAYMALADGVSPPTVEREQQQQEMQEDPAGYGD*
Ga0081540_11646943	3300005983	Tabebuia Heterophylla Rhizosphere	MPTSEDYRQMANRTAQIAIACSAPSVAGALLALAVEYMALADGLSPRAFATEQQLQEMQQDPVGFGD*
Ga0075365_101088323	3300006038	Populus Endosphere	MPTSEDYRQMANRAAQIAIACSAPSVAAGLLALALEYMALADGLSRPALEKEQQLQEMQEDPTGYGD*
Ga0075365_103391442	3300006038	Populus Endosphere	MPTPEDYRQMANRATQIAIACSAPSVAGALLALALDYMALADRLSRPVLEKEQQLQEMPQDPIGYGD*
Ga0075364_100789543	3300006051	Populus Endosphere	MPTSEDYRQMANRTAQIAIACSAPSVAGALLTLALEYMALADGLSPRAFATEQQLQEMQQDPVGFGD*
Ga0075362_101016992	3300006177	Populus Endosphere	MPTSEDCRQMANRTAQIAIACSAPSVAGALLALALEYMALADGLNRPVVEKEQQLQEMQQDPLGFGD*
Ga0075369_105842171	3300006186	Populus Endosphere	MPTSEDYRQMANRTAQIAIACSAPSVAGALLTLAVEYMALADGLSPRAFATEQQLQEMQQDPVGFGD*
Ga0075428_1001541753	3300006844	Populus Rhizosphere	MPTSEDYRQLANRTAQIAIACSAPSVAAALLALALEYMALAEGLSPPALAKEQQLQEMQQDPVGFGD*
Ga0075428_1003781213	3300006844	Populus Rhizosphere	MPTSEDYRQMANRTAQIAIACSAPSVAGALLALAVEYMALAGGLSPRAFATEQQLQEMQQDPVGFGD*
Ga0075428_1013104833	3300006844	Populus Rhizosphere	YRQMANRTAQIAIACSAPSVAGALLALALDYMALADGLGPPAFPKEQQLQEMQQDPAGFGD*
Ga0075421_1005517242	3300006845	Populus Rhizosphere	MANRTAQIAIACSAPSVAGALLALAVEYTALADGLSPRAFATEQQLQEMQQDPVGFGD*
Ga0075421_1006646863	3300006845	Populus Rhizosphere	MPTSEDYRQMADRTAQIAIACSAPSVAGALLALALEYMALADGLGPPAFPKEQQLQEMQQDPAGFGD*
Ga0075421_1024731821	3300006845	Populus Rhizosphere	MPTSDDYRQMANRAAQIAIGCSAPSVARALLALALAYMALADGVSQPTVEREQQLQEMQEDPAGYGD*
Ga0075433_114076952	3300006852	Populus Rhizosphere	SEDYRQMANRTAQIAIACSAPSVAGALLALAVEYMALADGLSPRAFATEQQLQEMQQDPVGFGD*
Ga0075420_1003964213	3300006853	Populus Rhizosphere	MANRTAQIAIACSAPSVAGALLALALDYMALADGLGPPAFPKEQQLQEMQQDPAGFGD*
Ga0075434_1015263212	3300006871	Populus Rhizosphere	MPTSEDYRQMADRTAQIAIACSAPSVAGALLALALEYMALAEGLSPPVFAKEQQLQEMQQDPVGYGD*
Ga0075429_1011440072	3300006880	Populus Rhizosphere	MPTSEDYRQMANRAAQIAIACSAPSVAGALLTLAVEYMALADGLSPRAFATEQQLQEMQQDPVGFGD*
Ga0075419_102550621	3300006969	Populus Rhizosphere	RQLANRTAQIAIACSAPSVAAALLALALEYMALAEGLSPPALAKEQQLQEMQQDPVGFGD
Ga0111539_104130071	3300009094	Populus Rhizosphere	MPTSDNYRQMANRAAQIAIGCSAPSVARALLALALTHMALADGVSQPTVEREQQLQEMQEDPAGYGD*
Ga0111539_111197162	3300009094	Populus Rhizosphere	MPTSEDYRQMANRTAQIAIACSAPSVAAALLALALEYMALAEGLSPPVFAKEQQLQEMQQDPVGFGD*
Ga0111539_112826471	3300009094	Populus Rhizosphere	PTSEEYRQMANRSAQIAIACSAPSVAAALLALALEYMALADGFGPPAFPKEQQLQEMQQDPAGFGD*
Ga0111539_128848271	3300009094	Populus Rhizosphere	RQLGGHRGGRAMPTSEDYRQMANRTAQTAIACSAPSVAGALLALAVEYMALADGLSPRAFATEQQLQEMQQDPVGFGD*
Ga0114129_108757972	3300009147	Populus Rhizosphere	MPTSEDYRQLANRTAQIAIACSAPSVAAALLALALEYMALADGLSRPVFAKEQQLQEMQQDPVGFGD*
Ga0114129_111899682	3300009147	Populus Rhizosphere	MPISEDYRQMANRAAQIAIACSAPSVAAALLALALEYMALADGLSRSVLEKEQRLQEMQEDPTGYGD*
Ga0075423_111423262	3300009162	Populus Rhizosphere	MANRTAQIAIACSAPSVAGALLALAVEYMALADGLNPRAFATEQQLQEMQQDPVGFGD*
Ga0126380_117570112	3300010043	Tropical Forest Soil	MPTSDDYRQMANRAAQIAIGCSAPSVARALLALALTYMALADAVSPPTVEREQQQQEMQEDPAGYGD*
Ga0126382_102194661	3300010047	Tropical Forest Soil	MPTSEDYRQMANRTAQIAIACSAPSVAGALLALAVEYMALADGLNPRVFATEQQLQEMQQDPVGFGD*
Ga0126382_107027371	3300010047	Tropical Forest Soil	PTSEDYRQMANRTAQIAIACSAPSVAGALLALAVEYMALADGLNPRAFATEQQLQEMQQDPVGFGD*
Ga0126382_110692162	3300010047	Tropical Forest Soil	MPTSEVYRQMANRTAQIAIACSAPSVAGALLALALEYMALADGLSPPAFAKEQQLQEMQQDPGGYGD*
Ga0126372_105834052	3300010360	Tropical Forest Soil	MPTFEDYRRMADRAAQLAIACSAPSVAGALLALAVEYMALADRLGQSAVAKEQQLQEMQQDPAGFGD*
Ga0126377_101903211	3300010362	Tropical Forest Soil	MPTSEDYRQLANRTAQIAIACSAPSVAAALLALALEYMALADGLSPPVLAKEQQMQEMQQDPVGFGD*
Ga0126377_105169153	3300010362	Tropical Forest Soil	GGRAMPTSEDYRQMANRTAQIAIACSAPSVAGALLALAVEYMALADGLNPRPFATEQQLQEISKILSASEISF*
Ga0126379_123174681	3300010366	Tropical Forest Soil	MPTSDDYRQIANRAAQIAIACSAPSVARALLALALTYMALADAVSPPTVEREQQQQKMQEDPAGNGD*
Ga0126381_1023473072	3300010376	Tropical Forest Soil	MREIAEWAVEGWAMPTSDDYRQMANRAAQIAIGCSAPSIARALLALALAYMTLADGLSPPTVDREQQQQEMLEDPAGYGD*
Ga0150985_1093584701	3300012212	Avena Fatua Rhizosphere	MPTSEDYRQMANRAAQIAIACSAPSVAAALLGLALEYMVLADGLSRPILEKEQQLQEMQQDPAGYGD*
Ga0126375_102494893	3300012948	Tropical Forest Soil	MANRTAQIAIACSAPSVAGALLALAVEYMALADGLNARAFATEQRLQEIQQDPVGFGD*
Ga0126375_106795841	3300012948	Tropical Forest Soil	MANRAAQIAIACSAPSVAGALLALALEYMALADGLSPPALAKEQQLQEMQHDPVGYGD*
Ga0164300_104939991	3300012951	Soil	MPTSDDYRQMANRAAQIAIGCSAPSVARALLALALTYMALADGVSQPTVEREQQLQEMQEDPAGYGD*
Ga0164299_101328111	3300012958	Soil	MPTSDDYRQMANRAAQIDIGCSAPSVARALLALALTYMALADGVSQPTVEREQQLREMQEDPAGYGD*
Ga0164308_106342471	3300012985	Soil	MPTSEDYRQMANRAAQIAIACSAPSVAAALLGLALEYMVLADGLSRPILEKEQPPQEMQQGPARYGD*
Ga0164307_100256355	3300012987	Soil	MPTSEDYRQMANRAAQIAIACSAPSVAAALLGLALEYMVLADGLSRPILEKEQPPQEMQQDPAGYGD*
Ga0164306_100843903	3300012988	Soil	MPTSDDYRQMANRAAQIAIGCSAPSVARALLALALTYMALADGISQPTVEREQQLQEMQEDPAGYGD*
Ga0157369_119154132	3300013105	Corn Rhizosphere	MPTSDDYRQMANRAAQIAIGCSAPSVARALLALALAYMALADGVSQPTVEREQQLREMQEDPAGYGD*
Ga0163163_114287721	3300014325	Switchgrass Rhizosphere	MPTSDDYRQMANRAAQIAIGCSAPSVARALLALALAYIALADEVSQPTVEREQQLQEMREDPAGYGD*
Ga0132258_101208003	3300015371	Arabidopsis Rhizosphere	MSGVEGRAMPTSDDYRQMANRAAQIAIGCCAPSVARALLALALTYMALADGISQPTVAREQQLQEMQEDPAGYGD*
Ga0132258_105196772	3300015371	Arabidopsis Rhizosphere	MPTSDDYRQMANRAAQIAIGCSAPSVARALLALALTYMALADAVSPPMVEREQQQQEMQEDPAGYGD*
Ga0132258_111432484	3300015371	Arabidopsis Rhizosphere	MANRAAQIAIACSAPSVAGALLALALEYMALADGLSPPALAKEQQLQEMQQDPVGYGD*
Ga0132258_117809303	3300015371	Arabidopsis Rhizosphere	FEDYRQMADRAAQLAIACSAPSIAGALLALAVEYMALADRLGQSAVAKQQQLQEMQQDPAGFGD*
Ga0132258_120462522	3300015371	Arabidopsis Rhizosphere	MPTSEDYRQMANRTAQIAIACSAPSVAGALLTLAVKYMALADGLNPRAFATEQQLQEMQQDPVGFGD*
Ga0132256_1012285621	3300015372	Arabidopsis Rhizosphere	RAAQIAIACSAPSVEAALLGLALEYMVLADGLSRPILEKEKQLQEMQQDPAGFGD*
Ga0132256_1024514152	3300015372	Arabidopsis Rhizosphere	MPTSDDYRQMANRAAQIAIGCSAPSVARALLALAVTYMALADGVSQPTVQREQQLQELQ
Ga0132255_1036657432	3300015374	Arabidopsis Rhizosphere	MPTSEDYRQLANRTAQIAIACSAPSVAAALLALALEYMALADGLSRPVFAKEQQLQEMQQGPVGFGD*
Ga0163161_101637333	3300017792	Switchgrass Rhizosphere	MPTSEDYRQMANRAAQIAIACSAPSVAAALLGLALEYMVLADGLSRPILEKEQQLQEMQQDPAGYGD
Ga0184604_103250981	3300018000	Groundwater Sediment	MPTSDDYRQMANRAAQIAIGCSAPSVARALLALALAYMALADGVSQPTVEREQQLQEMQEDPAGYGD
Ga0184605_105261071	3300018027	Groundwater Sediment	MPTSEDYRQMANRAAQIAITCSAPSVATALLGLALEYMALADGLSRPILEKEQQLQEMQQDPAGYGD
Ga0184620_102402471	3300018051	Groundwater Sediment	MPTSDDYRQMANRAAQIAIGCSAPSVARALLALALAYMALADGVSQLTVEREQQLQEMQEDPAGYGD
Ga0173482_107701101	3300019361	Soil	MPTSDDYRQMANRAAQIAIGCSAPSVARALLALALTYMALADGVSQPTVEREIVKQLQEMQEDPAGYGD
Ga0193701_10366672	3300019875	Soil	MPTSDDYRQMANRAAQIAIGCSAPSVAKALLALALAYMALADGVSQPTVEREQQLQEMQEDPAGYGD
Ga0193731_11673631	3300020001	Soil	MPTSEDYRQMANRAAQIAITCSAPSVAAALLGLALEYMALADGLSRPILEKEQQLQEMQQDPAGYGD
Ga0210381_100090341	3300021078	Groundwater Sediment	MPTSEDYRQMANRTAQIAIACSAPSVAGALLALAVEYMALADWLSPAAFAKEPQLQEMQQDPAGFGD
Ga0222623_104124951	3300022694	Groundwater Sediment	LGRRCGGRAMPTSEDYRQMANRAAQIAITCSAPSVAAALLGLALEYMALADGLSRPILEKEQQLQEMQQDPAGYGD
Ga0207680_106819102	3300025903	Switchgrass Rhizosphere	MPTSDDYRQMANRAAQIAIGCSAPSVARALLALALTYMALADGISQPTVEREKQLQEMQENPAGYGD
Ga0207686_115961491	3300025934	Miscanthus Rhizosphere	MPTSDDYRQMANRAAQIAIGCSAPSVARALLALALTYMALADGISQPTVEREQQLQEMQEDPAGYGD
Ga0207709_112346711	3300025935	Miscanthus Rhizosphere	IAERRVEGRAMPTSDDYRQMANRAAQIAIGCSAPSVARALLALALTYMALADGVSQPTVEREIVKQLQEMQEDPAGYGD
Ga0207678_100457083	3300026067	Corn Rhizosphere	MPTSDDYRQMANRAAQIAIGCSAPSVARALLALALTYMALADGVSQPTVEREQQLQEMQEDPAGYGD
Ga0207683_102760602	3300026121	Miscanthus Rhizosphere	MPTSDDYRQMANRAAQIAIGCSAPSVARALLGLALTYMALADGVSQPTVEREQQLQEMQEDPAGYGD
Ga0209814_104658372	3300027873	Populus Rhizosphere	MPTSEDYRQMANRTAQIAIACSAPSVAGALLALAVEYTALADGLSPRAFATEQQLQEMQQDPVGFGD
Ga0209382_103509912	3300027909	Populus Rhizosphere	MPTSEDYRQLANRTAQIAIACSAPSVAAALLALALEYMALAEGLSPPALAKEQQLQEMQQDPVGFGD
Ga0209382_113443632	3300027909	Populus Rhizosphere	PRLDRQGGRRAMPTSEDYRQMANRAAQIAIACSAPSVAAGLLALALEYMALADGLSRSVLEKEQRLQEMQEDPTGYGD
Ga0307323_101926781	3300028787	Soil	MPTSEDYRQMANRTAQIAIACSAPSVAGALLALALEYMALADWLSPAAFAKEPQLQEMQQDPAGFGD
Ga0307299_102328351	3300028793	Soil	VEGRAMPTSDDYRQMANRAAQIAIGCSAPSVAKALLALALAYMALADGVSQPTVERKQQLQEMQEDPAGYGD
Ga0308187_103875391	3300031114	Soil	MPTSEDYRQMANRTAQIAIACSAPSVAGALLALALEYMALADWLSPAAFAKETQLQEMQQDPA
Ga0307469_100709221	3300031720	Hardwood Forest Soil	MPTSEDYRQMANRTAQIAIACSAPSVAGALLTLAVEYMALADGLSPRAFATEQQLQEMQQDPVGFGD
Ga0307468_1002264921	3300031740	Hardwood Forest Soil	MPTSEDYRQMANRAAQIAIACSAPSVAAALLGLALEYMVLADGLSRPILEKEQQLQEMQQDPA
Ga0307468_1007477961	3300031740	Hardwood Forest Soil	MPTSEDYRQMANRTAQIAIACSAPSVAGALLALAVEYMALADGLNPRAFATEQQLQEMQQDPVGFGD
Ga0307473_101134332	3300031820	Hardwood Forest Soil	MPTPDDYRQMANRAAQIAIGCSAPSVARALLGLALTYMALADGVSQPTVEREQQLQEMQEDPAGYGD
Ga0307470_104669962	3300032174	Hardwood Forest Soil	MPTSEDYRQMANRTAQIAIACSAPSVAGALLALAVEYMALADGLNPRAFATEQQLQEMQQDPVGYGD
Ga0307471_1031521002	3300032180	Hardwood Forest Soil	MPTSDDYRQMANRAAQIAIGCSAPSVARALLALALTYMALADAVSPPTVEREQQQREMKEDPAGYGD
Ga0307472_1026530601	3300032205	Hardwood Forest Soil	SEDYRQMANRTAQIAIACSAPSVAGALLALAVEYMALADGLSPRAFATEQQLQEMQQDPVGFGD
Ga0373958_0047381_127_303	3300034819	Rhizosphere Soil	MANRAAQIAIGCSAPSVARALLGLALTYMALADGVSQPTVEREQQLQEMQEDPAGYGD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F082938

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences