Metagenome / Metatranscriptome Family F082911

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F082911
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	49 residues
Representative Sequence	DGKLRYRSSRTTGTARLSEDKGKTILTVMPEDPNYRTGRAEYERVK
Number of Associated Samples	88
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.89 %
% of genes near scaffold ends (potentially truncated)	97.35 %
% of genes from short scaffolds (< 2000 bps)	89.38 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.62

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (80.531 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (23.009 % of family members)
Environment Ontology (ENVO)	Unclassified (30.088 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (49.558 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 33.78% Coil/Unstructured: 66.22%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.62
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.62
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF02515	CoA_transf_3	5.31
PF12697	Abhydrolase_6	2.65
PF08327	AHSA1	1.77
PF00589	Phage_integrase	1.77
PF02776	TPP_enzyme_N	1.77
PF10442	FIST_C	1.77
PF07690	MFS_1	1.77
PF00300	His_Phos_1	1.77
PF13533	Biotin_lipoyl_2	0.88
PF13473	Cupredoxin_1	0.88
PF07883	Cupin_2	0.88
PF01812	5-FTHF_cyc-lig	0.88
PF03061	4HBT	0.88
PF04185	Phosphoesterase	0.88
PF01527	HTH_Tnp_1	0.88
PF07366	SnoaL	0.88
PF03466	LysR_substrate	0.88
PF01425	Amidase	0.88
PF14378	PAP2_3	0.88
PF13304	AAA_21	0.88
PF06897	DUF1269	0.88
PF00528	BPD_transp_1	0.88
PF02780	Transketolase_C	0.88
PF00115	COX1	0.88
PF13177	DNA_pol3_delta2	0.88
PF02775	TPP_enzyme_C	0.88
PF04343	DUF488	0.88
PF13432	TPR_16	0.88
PF04392	ABC_sub_bind	0.88
PF02211	NHase_beta	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	5.31
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.88
COG0212	5-formyltetrahydrofolate cyclo-ligase	Coenzyme transport and metabolism [H]	0.88
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.88
COG3189	Uncharacterized conserved protein YeaO, DUF488 family	Function unknown [S]	0.88
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	0.88
COG4803	Uncharacterized membrane protein	Function unknown [S]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	82.30 %
Unclassified	root	N/A	17.70 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	80.53 %
Unclassified	root	N/A	17.70 %
Viruses	superkingdom	All Organisms → Viruses	1.77 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	80.53 %
Unclassified	root	N/A	17.70 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.77 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	45.13 %
Unclassified	root	N/A	17.70 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	7.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.77 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	0.88 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	45.13 %
Unclassified	root	N/A	17.70 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.77 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.77 %
uncultured bacterium fosmid pJB190D12_contig II	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium fosmid pJB190D12_contig II	0.88 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	44.25 %
Unclassified	root	N/A	17.70 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.77 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.77 %
Candidatus Fischerbacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Fischerbacteria	0.88 %
uncultured bacterium fosmid pJB190D12_contig II	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium fosmid pJB190D12_contig II	0.88 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	42.48 %
Unclassified	root	N/A	17.70 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.77 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.77 %
Candidatus Fischerbacteria bacterium RBG_13_37_8	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Fischerbacteria → Candidatus Fischerbacteria bacterium RBG_13_37_8	0.88 %
uncultured bacterium fosmid pJB190D12_contig II	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium fosmid pJB190D12_contig II	0.88 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	42.48 %
Unclassified	root	N/A	17.70 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.77 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.77 %
Candidatus Fischerbacteria bacterium RBG_13_37_8	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Fischerbacteria → Candidatus Fischerbacteria bacterium RBG_13_37_8	0.88 %
uncultured bacterium fosmid pJB190D12_contig II	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium fosmid pJB190D12_contig II	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2070309009\|GPKNP_GG3DY5401DBQXZ	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	505	Open in IMG/M
3300000550\|F24TB_10062233	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1167	Open in IMG/M
3300000550\|F24TB_12223409	Not Available	831	Open in IMG/M
3300001139\|JGI10220J13317_10213299	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	558	Open in IMG/M
3300005166\|Ga0066674_10385699	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	652	Open in IMG/M
3300005167\|Ga0066672_10165605	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1393	Open in IMG/M
3300005167\|Ga0066672_10272355	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1094	Open in IMG/M
3300005178\|Ga0066688_10482615	All Organisms → cellular organisms → Bacteria	799	Open in IMG/M
3300005180\|Ga0066685_10150176	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1584	Open in IMG/M
3300005186\|Ga0066676_10443435	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	879	Open in IMG/M
3300005289\|Ga0065704_10730757	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Fischerbacteria → Candidatus Fischerbacteria bacterium RBG_13_37_8	549	Open in IMG/M
3300005330\|Ga0070690_101018902	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	653	Open in IMG/M
3300005332\|Ga0066388_105351707	All Organisms → cellular organisms → Bacteria	651	Open in IMG/M
3300005444\|Ga0070694_100789569	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	778	Open in IMG/M
3300005467\|Ga0070706_100630455	All Organisms → cellular organisms → Bacteria	995	Open in IMG/M
3300005468\|Ga0070707_101703601	Not Available	597	Open in IMG/M
3300005468\|Ga0070707_102043814	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300005518\|Ga0070699_100025992	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	5049	Open in IMG/M
3300005536\|Ga0070697_100281639	All Organisms → cellular organisms → Bacteria → Proteobacteria	1427	Open in IMG/M
3300005544\|Ga0070686_101560086	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	558	Open in IMG/M
3300005555\|Ga0066692_10106257	All Organisms → cellular organisms → Bacteria	1672	Open in IMG/M
3300005555\|Ga0066692_10333366	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	963	Open in IMG/M
3300005568\|Ga0066703_10684138	Not Available	591	Open in IMG/M
3300005568\|Ga0066703_10717241	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	575	Open in IMG/M
3300005598\|Ga0066706_10763674	All Organisms → cellular organisms → Bacteria	765	Open in IMG/M
3300005713\|Ga0066905_101131664	All Organisms → cellular organisms → Bacteria	697	Open in IMG/M
3300005713\|Ga0066905_101551477	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300005764\|Ga0066903_101429307	Not Available	1301	Open in IMG/M
3300005764\|Ga0066903_106967614	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	586	Open in IMG/M
3300006034\|Ga0066656_10198061	All Organisms → cellular organisms → Bacteria	1277	Open in IMG/M
3300006034\|Ga0066656_10292584	All Organisms → Viruses → Predicted Viral	1050	Open in IMG/M
3300006194\|Ga0075427_10021119	Not Available	1035	Open in IMG/M
3300006572\|Ga0074051_11466803	Not Available	823	Open in IMG/M
3300006796\|Ga0066665_10406942	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1123	Open in IMG/M
3300006852\|Ga0075433_11176864	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	666	Open in IMG/M
3300006854\|Ga0075425_100175957	All Organisms → cellular organisms → Bacteria	2456	Open in IMG/M
3300006854\|Ga0075425_101232385	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	850	Open in IMG/M
3300006854\|Ga0075425_101454886	Not Available	774	Open in IMG/M
3300006904\|Ga0075424_100255871	Not Available	1862	Open in IMG/M
3300006914\|Ga0075436_101146388	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	586	Open in IMG/M
3300009098\|Ga0105245_12433076	Not Available	577	Open in IMG/M
3300009100\|Ga0075418_10720339	All Organisms → cellular organisms → Bacteria	1076	Open in IMG/M
3300009100\|Ga0075418_12135626	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300009147\|Ga0114129_10305897	All Organisms → cellular organisms → Bacteria	2117	Open in IMG/M
3300009147\|Ga0114129_11294939	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	903	Open in IMG/M
3300010301\|Ga0134070_10445137	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	518	Open in IMG/M
3300010335\|Ga0134063_10450820	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	637	Open in IMG/M
3300010336\|Ga0134071_10433300	All Organisms → cellular organisms → Bacteria	672	Open in IMG/M
3300010336\|Ga0134071_10497511	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	629	Open in IMG/M
3300010358\|Ga0126370_11099845	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium fosmid pJB190D12_contig II	732	Open in IMG/M
3300010358\|Ga0126370_11226019	All Organisms → cellular organisms → Bacteria	699	Open in IMG/M
3300010362\|Ga0126377_10166562	All Organisms → cellular organisms → Bacteria	2085	Open in IMG/M
3300010362\|Ga0126377_10192042	All Organisms → cellular organisms → Bacteria	1950	Open in IMG/M
3300010362\|Ga0126377_12125739	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300010373\|Ga0134128_11930205	Not Available	650	Open in IMG/M
3300010375\|Ga0105239_11630423	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	746	Open in IMG/M
3300010863\|Ga0124850_1062743	Not Available	1145	Open in IMG/M
3300012189\|Ga0137388_11490146	All Organisms → cellular organisms → Bacteria	614	Open in IMG/M
3300012199\|Ga0137383_11141675	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	562	Open in IMG/M
3300012203\|Ga0137399_10918549	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	737	Open in IMG/M
3300012205\|Ga0137362_10439579	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1129	Open in IMG/M
3300012362\|Ga0137361_10542587	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1067	Open in IMG/M
3300012362\|Ga0137361_10785883	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	867	Open in IMG/M
3300012582\|Ga0137358_10933034	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	567	Open in IMG/M
3300012685\|Ga0137397_10261619	All Organisms → cellular organisms → Bacteria	1289	Open in IMG/M
3300012685\|Ga0137397_10902589	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	655	Open in IMG/M
3300012922\|Ga0137394_11465873	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300012927\|Ga0137416_11169911	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	692	Open in IMG/M
3300012930\|Ga0137407_11362667	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	674	Open in IMG/M
3300012948\|Ga0126375_10924217	All Organisms → cellular organisms → Bacteria	703	Open in IMG/M
3300012948\|Ga0126375_11150428	Not Available	642	Open in IMG/M
3300013297\|Ga0157378_11074866	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	841	Open in IMG/M
3300014154\|Ga0134075_10441645	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	578	Open in IMG/M
3300015264\|Ga0137403_11052346	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	660	Open in IMG/M
3300015359\|Ga0134085_10227631	All Organisms → cellular organisms → Bacteria	808	Open in IMG/M
3300015373\|Ga0132257_101287299	Not Available	928	Open in IMG/M
3300015374\|Ga0132255_100387994	Not Available	2030	Open in IMG/M
3300017944\|Ga0187786_10312052	Not Available	650	Open in IMG/M
3300018468\|Ga0066662_12738247	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	522	Open in IMG/M
3300020170\|Ga0179594_10404021	Not Available	518	Open in IMG/M
3300025910\|Ga0207684_11709261	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	507	Open in IMG/M
3300026297\|Ga0209237_1000690	All Organisms → cellular organisms → Bacteria	19406	Open in IMG/M
3300026298\|Ga0209236_1080185	All Organisms → cellular organisms → Bacteria	1516	Open in IMG/M
3300026313\|Ga0209761_1121852	All Organisms → Viruses → Predicted Viral	1266	Open in IMG/M
3300026331\|Ga0209267_1012624	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	4504	Open in IMG/M
3300026331\|Ga0209267_1142648	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	993	Open in IMG/M
3300026335\|Ga0209804_1107649	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1275	Open in IMG/M
3300026529\|Ga0209806_1305782	Not Available	534	Open in IMG/M
3300026532\|Ga0209160_1060785	All Organisms → cellular organisms → Bacteria	2113	Open in IMG/M
3300026537\|Ga0209157_1012229	All Organisms → cellular organisms → Bacteria → Proteobacteria	5687	Open in IMG/M
3300026540\|Ga0209376_1069416	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1924	Open in IMG/M
3300026548\|Ga0209161_10334399	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	690	Open in IMG/M
3300026548\|Ga0209161_10513560	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	531	Open in IMG/M
3300027324\|Ga0209845_1004292	All Organisms → cellular organisms → Bacteria	2456	Open in IMG/M
3300027748\|Ga0209689_1112505	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1383	Open in IMG/M
3300028381\|Ga0268264_11916884	Not Available	602	Open in IMG/M
3300031226\|Ga0307497_10700927	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	522	Open in IMG/M
3300031544\|Ga0318534_10719433	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300031561\|Ga0318528_10036801	All Organisms → cellular organisms → Bacteria	2431	Open in IMG/M
3300031680\|Ga0318574_10308420	All Organisms → cellular organisms → Bacteria → Proteobacteria	920	Open in IMG/M
3300031736\|Ga0318501_10565325	All Organisms → cellular organisms → Bacteria → Proteobacteria	623	Open in IMG/M
3300031740\|Ga0307468_102153982	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	538	Open in IMG/M
3300031740\|Ga0307468_102354649	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	518	Open in IMG/M
3300031819\|Ga0318568_10343302	All Organisms → cellular organisms → Bacteria → Proteobacteria	929	Open in IMG/M
3300031820\|Ga0307473_10272724	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1050	Open in IMG/M
3300031820\|Ga0307473_10935257	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	628	Open in IMG/M
3300031890\|Ga0306925_12068948	All Organisms → cellular organisms → Bacteria → Proteobacteria	535	Open in IMG/M
3300031910\|Ga0306923_11796875	All Organisms → cellular organisms → Bacteria → Proteobacteria	630	Open in IMG/M
3300032174\|Ga0307470_11242832	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	607	Open in IMG/M
3300032180\|Ga0307471_102009296	All Organisms → cellular organisms → Bacteria	725	Open in IMG/M
3300032180\|Ga0307471_102584014	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	643	Open in IMG/M
3300032180\|Ga0307471_103071456	Not Available	592	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	84.07%
Host-Associated	Host-Associated	15.93%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	84.07%
Plants	Host-Associated → Plants	15.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	84.07%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.39%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.54%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	66.37%
Loam	Environmental → Terrestrial → Soil → Loam	15.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.39%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.65%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.89%
Sand	Environmental → Terrestrial → Soil → Sand	0.89%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.55%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	26.55%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	13.27%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.39%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.31%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.65%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.77%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.89%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	23.01%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	12.39%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	9.73%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	7.08%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.08%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.19%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	5.31%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.42%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.77%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.77%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.77%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.89%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.89%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2070309009	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300001139	Soil microbial communities from Great Prairies - Wisconsin, Switchgrass soil	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006194	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1	Host-Associated	Open in IMG/M
3300006572	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010863	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017944	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_10_20_MG	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026298	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026331	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)	Environmental	Open in IMG/M
3300026335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)	Environmental	Open in IMG/M
3300026529	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)	Environmental	Open in IMG/M
3300026532	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)	Environmental	Open in IMG/M
3300026537	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)	Environmental	Open in IMG/M
3300026540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300027324	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_50_60 (SPAdes)	Environmental	Open in IMG/M
3300027748	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPKNP_05731020	2070309009	Soil	EGKFYLQDGQLRYRSSRTTGTATVFEDQGRTLLAVMPKNLDYKTGRAEYERVK
F24TB_100622332	3300000550	Soil	FYLQDGKLRYRSSRTTGTARLSEDKGKTSLTMIADNPDYGKAEYERIR*
F24TB_122234091	3300000550	Soil	KLRYRSSRTTGTASLSEDQGKTILTVMPEDSYYKTGKAEYERVK*
JGI10220J13317_102132991	3300001139	Soil	SSRTTGTAKLSEDKGKTTLTVTPEDPNFRTGTGEYERVK*
Ga0066674_103856991	3300005166	Soil	AEGKFYLKDGKLSYRSSRTTGTARLSEEGGKTTLTVTPEDPNYRTGKAEYERVK*
Ga0066672_101656051	3300005167	Soil	LRYRSSRTTGTASLSEDKGKTTLTVLPEDSTYGRADYERVK*
Ga0066672_102723551	3300005167	Soil	KFYLQDGKLRYRSSRTTGTASLSEDRGKTMLTVMPEDPKYHTGRAEYERVKE*
Ga0066688_104826151	3300005178	Soil	FYLQDGKLRYRSSRTIGTASLSEDQGKTMLTVMPEDPKYQTGRAEYERVKE*
Ga0066685_101501765	3300005180	Soil	GKFYLQDGKLRYRSSRTTGTASLSEDNGKTVLTVKPEDPNYQTGTGEYERVK*
Ga0066676_104434352	3300005186	Soil	YRSSRTTGTAKLSEDQGKTILTVMPEDPNYRTGRAEYERVK*
Ga0065704_107307572	3300005289	Switchgrass Rhizosphere	GQFYLQNGKLFYRSSRTTGAASLSEDKGKTTLSVLPEDPNYRTGRADYERAD*
Ga0070690_1010189022	3300005330	Switchgrass Rhizosphere	GKLMYRSSRTAGVAKLTEDDGKTTITITPDDPSYRTGSARYERVK*
Ga0066388_1053517071	3300005332	Tropical Forest Soil	GASTEGKFYLQDGKLRYRSSRTTGTASLSEDQGKTVLTVMPADPKYRAGSAAFERVK*
Ga0070694_1007895692	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	NGSTAVGQFSLRDGKLVYQSSRTTGTAKLSEDKGKTTLTVTPEDPNFRTGTGEYERVK*
Ga0070708_1012164503	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	LHDGKLLYRSSRTTGAASISEDQGKTVLTVLPVDPLYGAGSRAEYERVE*
Ga0070706_1006304551	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	GSTSEGRFYLQDGKLRYRSSRTTGTARLSEDKGKTTLTVMPEDSTYGRADYERVK*
Ga0070707_1017036011	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	FYLQDGKLRYRSSRTTGTASVSEDKGKTVLKLMPEDPNYRTGRAEYERVK*
Ga0070707_1020438141	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	FYLQDGKLRYRSSRTTGTATLSEDQGKTMLTVMPENSYYKTGKAEYERVK*
Ga0070699_10002599211	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	KFYLRDGKLRYRSSRTTGTASLSEDQGKTMLKVTPENSNYKTGRAEYERVK*
Ga0070697_1002816391	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	EGKFYLQDGKLRYRSSRTTGTARLSEEQGRTTLTVMPENSYYKTGRAEYERVKE*
Ga0070686_1015600862	3300005544	Switchgrass Rhizosphere	YQSSRTTGTAKLSEDKGKTTLTVTPEDPNFRTGTGEYERVK*
Ga0066692_101062571	3300005555	Soil	GKLRYRSSRTTGTASVSEDKGKTVLTVMPEDPNYRTGRAQYERLK*
Ga0066692_103333661	3300005555	Soil	RTTGTAKLSEDQGKTTLTVMPEDPNYRTGRAEYERVK*
Ga0066703_106841381	3300005568	Soil	LRYRSSGTTGTASLSEDEGITVLTVMPEDANYRTGSAKYQRVR*
Ga0066703_107172412	3300005568	Soil	GTFYLQDGKLRYRSSRTTGTASVSEDKGKTVLKLMPEDPNYRTGRAEYERVK*
Ga0066706_107636741	3300005598	Soil	SRTTGTARLSEEGGKTTLTVTPEDPNYRTGKAEYERVK*
Ga0066905_1011316641	3300005713	Tropical Forest Soil	GAITEGKFYLQDGQLRYRSSRTTGAATLSEDQDKTVLTVMPADPRYHTGRAEYERVK*
Ga0066905_1015514772	3300005713	Tropical Forest Soil	QDGQLRYRSSRTTGAASLSDDQGTTRLTMMPADPKYHTGRAEYERVKQ*
Ga0066903_1014293071	3300005764	Tropical Forest Soil	TTEGQFYLQDGKLRYRSSRSEGTASLSDDKGKATLRMTADNPDYGKAEYERIR*
Ga0066903_1069676142	3300005764	Tropical Forest Soil	LQDGQLRYRSSRTTGAATVSEDQDKTVLTVMPADPKYHTGRAEYERVK*
Ga0066656_101980614	3300006034	Soil	VSGSTAEGKFYLKDGKVLYRSSRTTGTARLSEEGGKTTLMVTPEDPNYRTGKAEYERVK*
Ga0066656_102925843	3300006034	Soil	DGKLRYRSSRTTGTARLSEDKGKTILTVMPEDPNYRTGRAEYERVK*
Ga0075427_100211191	3300006194	Populus Rhizosphere	DGKLLYRSSRTTGKAQLTEDKGKTTLSVIPDDPNYRTGRGDYERVK*
Ga0074051_114668032	3300006572	Soil	KFYLQDGKLRYQSSRTAGTASLSEDRGKTTLTMTPENLDYGKAEYERVQ*
Ga0066665_104069422	3300006796	Soil	LLYRSSRTTGTARLSEEGGKTTLTVTPEDPNYRTGKAEYERVK*
Ga0075433_111768642	3300006852	Populus Rhizosphere	GKFYLQEGQLRYRSSRTTGTASLSEDRGKTMLTVMPEDPKYHTGRAEYERVKE*
Ga0075425_1001759574	3300006854	Populus Rhizosphere	FYLQDGKLMYRSSRTTGTARLTEEGGKTTITVTPDDPTYRTGSAQYERIK*
Ga0075425_1012323853	3300006854	Populus Rhizosphere	SRTAGTASLSEDQGKTILTVMPEGPTCETGRKEYERAK*
Ga0075425_1014548863	3300006854	Populus Rhizosphere	TRTTGTANLSEDQGKTILTVMPEDPTSDTGRTKYERVK*
Ga0075424_1002558711	3300006904	Populus Rhizosphere	GSTTEGQFYLQGGKLLYRSSRTTGAAKLSEDKGRTTLTVTPDDPNYRTGTGEYERVK*
Ga0075436_1011463881	3300006914	Populus Rhizosphere	QGEFYLQDGKLMYRSSRTTGTARVTEEGGKTTITVTPDDPTFRTGSAQYERIK*
Ga0105245_124330761	3300009098	Miscanthus Rhizosphere	RTTGTASFSEDKGKTTLTLKPEDATYGKAEYERVK*
Ga0075418_107203393	3300009100	Populus Rhizosphere	SSRTTGTATVFEDQGRTLLAVMPENLDYKTGRAEYERVK*
Ga0075418_121356261	3300009100	Populus Rhizosphere	TQRGVQTEGKFYLQDGKLLYQSSRTAGTARLSEDRGKTSLTMTPENPDYGKAEYERVR*
Ga0114129_103058974	3300009147	Populus Rhizosphere	EDGKLRYRSSRTTGTASLSEDRGKAVLTVMPEDPNYQTGRGEYERVK*
Ga0114129_112949392	3300009147	Populus Rhizosphere	SQGKFYLQDGKLMYRSSRTTGTARLTEEGGKTTITVTPDDPTYRTGSAQYERIK*
Ga0134070_104451372	3300010301	Grasslands Soil	GKFYLKDGKLLYQSSRTTGTARLSEEGGKTTLTVTPADPNYRTGKAEYERVK*
Ga0134063_104508202	3300010335	Grasslands Soil	GKLRYRSSRTTGTASLSEDKGKTTLTVLPEDSTYGRADYERVK*
Ga0134071_104333002	3300010336	Grasslands Soil	SEGKFYLQDGKLRYRSSRTTGTASLSEDKGKTTLTVVPEDPNYQTGRAEYERVK*
Ga0134071_104975111	3300010336	Grasslands Soil	TEGKFYLQDGKLRYRSSRTIGTASLSEDQGKTMLTVMPEDPKYQTGRAEYERVKE*
Ga0126370_110998452	3300010358	Tropical Forest Soil	EGQFYLQGGKILYRSSRTTGAAKLTEDKGRTTLTVTPDDPNYRTGTGEYERVR*
Ga0126370_112260192	3300010358	Tropical Forest Soil	LQDGQLRYRSSRTTGAATLSEDQDKTVLTVMPADPKYHTGRAEYERVK*
Ga0126377_101665622	3300010362	Tropical Forest Soil	LTTDGATTEGKFYLQDGKLRYRSSRTTGTASLSEDQGKTMLKVMPENSYYKTGRAEYERVK*
Ga0126377_101920424	3300010362	Tropical Forest Soil	LTTDGAITEGKFYLQEGRLRYRSSRTTGAASLSEDQGKTMLKVMPENSYYKTGEAQYERVK*
Ga0126377_121257392	3300010362	Tropical Forest Soil	FYLQNGKILYRSSRTTGAAKLTEDKGRTTLTVTPDDPNYRTGTGEYERVR*
Ga0134128_119302051	3300010373	Terrestrial Soil	RYRSSRTMGTAKLSEDNGKTTLRVIPERPNIETGPAEYERVK*
Ga0105239_116304231	3300010375	Corn Rhizosphere	GQFSLRDGKLVYQSSRTTGTAKLSEDKGKTTLTVTPEDPNFRTGTGEYERVK*
Ga0124850_10627431	3300010863	Tropical Forest Soil	QDGKLRYRSLGTTGTARVDEDEGITVLTVMPEAPNSRTGSARYQRGK*
Ga0137388_114901461	3300012189	Vadose Zone Soil	KFYLQDGKLRYRSSRTTGTASLSEDQGKSILTVMPEDPNYQTGKAEYERVK*
Ga0137383_111416751	3300012199	Vadose Zone Soil	TSEGKFYLQDGKLRYRSSRTTGTASLSEDKGKTTLTLKPEDATYGKAEYERVKK*
Ga0137399_109185491	3300012203	Vadose Zone Soil	QDGKLMYRSSRTTGAAKLTEEGGKTTVTITPNDPSYRTGSARYERVK*
Ga0137362_104395793	3300012205	Vadose Zone Soil	QSSRTTGTARLSAEGGKTTLTVTPADPNYRTGKAEYERVK*
Ga0137361_105425873	3300012362	Vadose Zone Soil	LQDGKLRYRSSRTTGTASLSEDKGKTVLPVKAEDPNYRTGTGEYERVKQ*
Ga0137361_107858832	3300012362	Vadose Zone Soil	GQFYLQDGQLRYRSSRTTGTAKLSEDQGKTTLTVKPEDPNYQTGTAEYERVK*
Ga0137358_109330342	3300012582	Vadose Zone Soil	LTSEGQFYLQDGKLRYRSSRTTGTASLSEDKGKTTLTVLPEDSTYGRADYERVK*
Ga0137397_102616192	3300012685	Vadose Zone Soil	VETEGKFYLQDGKLRYQSSRTAGTARLSEDQGKTTLTMTPENPDYGKAEYELIK*
Ga0137397_109025891	3300012685	Vadose Zone Soil	QDGKLVYRSSRTTGTATLSEDKGKTTLKVTPEDPNYRTGTGEYERVK*
Ga0137394_114658732	3300012922	Vadose Zone Soil	YLQDGKLRYRSSRTTGTAILSEDKGKTVLKVVPEDPNYRTGTGEYERVK*
Ga0137416_111699112	3300012927	Vadose Zone Soil	KLMYRSSRTTGAAKLTEEGGKTTVTITPNDPSYRTGSARYERVK*
Ga0137407_113626672	3300012930	Vadose Zone Soil	SSIFKTASCAYQSSRTKGTASLSEDNGKTVLKVAPDDRNYRTGTGEYERVK*
Ga0126375_109242171	3300012948	Tropical Forest Soil	KFYLQDGGLRYRSSRTRGAASLSQDQGKTVLTVMPADPRYHTGGAEYERVK*
Ga0126375_111504282	3300012948	Tropical Forest Soil	IRGSTTEGKFYLEDGKLRYRSSRTTGTASLSEDRGKAVLTVLPEYPNYQTGRGEYERVK*
Ga0157378_110748661	3300013297	Miscanthus Rhizosphere	QSSRTTGTAKLSEDKGKTTLTVTPEDPNFRTGTGEYERVK*
Ga0134075_104416451	3300014154	Grasslands Soil	RYRSSRTTGTASLSEDNGKTVLTVKPEDPNYQTGTGEYERVK*
Ga0137403_110523461	3300015264	Vadose Zone Soil	QDGKLRYRSSRTTGTASLSEDKGKTTLTLKPEDATYGKAEYERVKK*
Ga0134085_102276312	3300015359	Grasslands Soil	YRSSRTTGTARLSEEGGKTTLTVTPEDPNYRTGKAEYERVK*
Ga0132257_1012872992	3300015373	Arabidopsis Rhizosphere	EGQFYLQDGKLLYRSSRTTGAAKLTEDKGRTTLTVTPDDPNYTTGKGEYERVK*
Ga0132255_1003879942	3300015374	Arabidopsis Rhizosphere	GQFYLQDGKLLYRSSRTTGAAKLTEDKGRTTLTVTPDDPNYRTGTGEYERVR*
Ga0187786_103120521	3300017944	Tropical Peatland	DGKLRYRSSLTTGTASVSQDKGKTVLTMMPDNANSRTGRAEYERVK
Ga0066662_127382471	3300018468	Grasslands Soil	AEGKFYVKDGKLLYRSSRTTGTARLSEEGGKTTLTVTPEDPNYRTGKAEYERVK
Ga0179594_104040212	3300020170	Vadose Zone Soil	SEGKFFLENGALRYRSSRTMGTAKLSEDNGKTTLKVIPEGPNIETGPAEYERVK
Ga0207684_117092611	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	EGKFYLQDGKLRYRSSRTTGTAKLSEDQGKTTLTVMPEDPNYRTGRAEYERVK
Ga0209237_10006901	3300026297	Grasslands Soil	RTTGTAKLSEDQGKTTLTVMPEDPNYRTGRAEYERVK
Ga0209236_10801854	3300026298	Grasslands Soil	TTGTAKLSEDQGKTILTVMPEDPNYRTGRAEYERVK
Ga0209761_11218523	3300026313	Grasslands Soil	SSRTTGTAKLSEDQGKTILTVMPEDPNYRTGRAEYERVK
Ga0209267_10126249	3300026331	Soil	LQDGKLRYRSSRTTGTARLSEDKGKTTLTVMPEDSTYGRADYERVK
Ga0209267_11426481	3300026331	Soil	DGKLRYRSSRTTGTASLSEDKGKTTLTVLPEDSTYGRADYERVK
Ga0209804_11076491	3300026335	Soil	TTEGKFYLQDGKLRYRSSRTIGTASLSEDQGKTMLTVMPEDPKYQTGRAEYERVKE
Ga0209806_13057821	3300026529	Soil	GKLRYRSSRTTGTASLSEDKGKTTLTVLPEDSTYGRADYERVK
Ga0209160_10607853	3300026532	Soil	DGKLRYRSSRTTGTARLSEDKGKTILTVMPEDPTYGRADYERVK
Ga0209157_10122295	3300026537	Soil	RSSRTTGTARLSEEGGKTTLTVTPEDPNYRTGKAEYERVK
Ga0209376_10694161	3300026540	Soil	GKFYLQDGKLRYRSSRTTGTASLSEDNGKTVLTVKPEDPNYQTGTGEYERVK
Ga0209161_103343992	3300026548	Soil	YLKDGKLLYQSSRTTGTARLSEEGGKTTLTVTPADPNYRTGKAEYERVK
Ga0209161_105135601	3300026548	Soil	DRFYIQDGTLRYRSSRTTGIARLSGDRGTTVLTVMPEDPNYRTGTAEYERVK
Ga0209845_10042925	3300027324	Groundwater Sand	EGKFYLQDGKLQYRSSRTTGTARLSEDQGKTILTVMPEDPNYQTGRAEYERVK
Ga0209689_11125054	3300027748	Soil	RSSRTTGTASLSEDKGKTTLTVLPEDSTYGRADYERVK
Ga0268264_119168841	3300028381	Switchgrass Rhizosphere	SSRTTGTASLSEDKGKTTLTLKPEDATYGKAEYERVK
Ga0307497_107009272	3300031226	Soil	RYRSSRTTGTASLSEDKGKTTLTVMPEDATYGKAEYERVK
Ga0318534_107194331	3300031544	Soil	LQDGKLRYRSSRTTGDATLSEDKGKVTLKVSPEDPNYRTGRAEYERVK
Ga0318528_100368014	3300031561	Soil	FLQDGKLRYRSSRTTGDATLSEDKGKVTLKVSPEDPNYRTGRAEYERVK
Ga0318574_103084201	3300031680	Soil	TTEGQFYLQNGKLLYRSSRTTGAAKLTEDQGRTTLTQIPDDPNFRTGTGRYERVK
Ga0318501_105653252	3300031736	Soil	YLQNGKLMYRSSRTTGAAKLTEEQGRTTLTQIPDDPNFRTGTGRYERVK
Ga0307468_1021539821	3300031740	Hardwood Forest Soil	TAEGQFSLQDGKLVYRSSRTTGTARLSEDKGKTTLTVTPEDPNFRTGTGEYERVK
Ga0307468_1023546492	3300031740	Hardwood Forest Soil	VTTEGQFYLQDGKLRYRSSRTTGTARLSEDQGKTTLTVISDNPDYGKAEYERIK
Ga0318568_103433022	3300031819	Soil	TEGQFYLQNGKLMYRSSRTTGAAKLTEDKGRTTLTQIPDDPNFRTGTGRYERVK
Ga0307473_102727243	3300031820	Hardwood Forest Soil	DGKLRYRSSRTTGTASLSEDKGKTTLTLKPEDATYGKAAYERVK
Ga0307473_109352571	3300031820	Hardwood Forest Soil	KLRYRSSRTTGTASLSEDKGKTTLTVLPEDSTYGRADYERVK
Ga0306925_120689481	3300031890	Soil	TINGSTTEGQFYLQNGKLMYRSSRTTGAAKLTEEQGRTTLTQIPDDPNFRTGTGRYERVK
Ga0306923_117968751	3300031910	Soil	RTTGAAKLTEDKGRTTLTQIPDDPNFRTGTGRYERVK
Ga0307470_112428322	3300032174	Hardwood Forest Soil	YLQDGKLRYRSSRTTGTASLSEDKGKTTLTLKPEDATYGKAEYERVK
Ga0307471_1020092961	3300032180	Hardwood Forest Soil	QFYLQDGELRYRSSRTTGTAKLSEDGGTTVLTVMPEDPNYRTGTAEYERIR
Ga0307471_1025840141	3300032180	Hardwood Forest Soil	YLQDGKLRYRSSRTTGTASLSEDKGKTTLTLKPEDATYGKAAYERVK
Ga0307471_1030714561	3300032180	Hardwood Forest Soil	EGKFYLQDGKLRYRSSRTTGTARLSEEQGRTTLTVMPENSYYKTGRAEYERVKE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F082911

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences