Basic Information | |
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Family ID | F082875 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 113 |
Average Sequence Length | 37 residues |
Representative Sequence | MTQETVQIVAGVLAVLLIGIIIMRRKNKKKTQEDEF |
Number of Associated Samples | 101 |
Number of Associated Scaffolds | 113 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 37.50 % |
% of genes near scaffold ends (potentially truncated) | 1.77 % |
% of genes from short scaffolds (< 2000 bps) | 6.19 % |
Associated GOLD sequencing projects | 97 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.52 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (93.805 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (23.009 % of family members) |
Environment Ontology (ENVO) | Unclassified (37.168 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (43.363 % of family members) |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 42.19% β-sheet: 0.00% Coil/Unstructured: 57.81% | Feature Viewer |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.52 |
Powered by PDBe Molstar |
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Pfam ID | Name | % Frequency in 113 Family Scaffolds |
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PF08450 | SGL | 43.36 |
PF02866 | Ldh_1_C | 7.96 |
PF01243 | Putative_PNPOx | 4.42 |
PF00482 | T2SSF | 2.65 |
PF00903 | Glyoxalase | 1.77 |
PF03938 | OmpH | 1.77 |
PF07676 | PD40 | 0.88 |
PF00056 | Ldh_1_N | 0.88 |
PF00037 | Fer4 | 0.88 |
PF13751 | DDE_Tnp_1_6 | 0.88 |
PF01625 | PMSR | 0.88 |
PF12840 | HTH_20 | 0.88 |
PF08240 | ADH_N | 0.88 |
PF13442 | Cytochrome_CBB3 | 0.88 |
PF14224 | DUF4331 | 0.88 |
PF00216 | Bac_DNA_binding | 0.88 |
PF01425 | Amidase | 0.88 |
PF06262 | Zincin_1 | 0.88 |
PF01261 | AP_endonuc_2 | 0.88 |
PF03989 | DNA_gyraseA_C | 0.88 |
PF01808 | AICARFT_IMPCHas | 0.88 |
PF01933 | CofD | 0.88 |
PF07992 | Pyr_redox_2 | 0.88 |
PF00351 | Biopterin_H | 0.88 |
PF01596 | Methyltransf_3 | 0.88 |
PF00856 | SET | 0.88 |
PF01168 | Ala_racemase_N | 0.88 |
PF00501 | AMP-binding | 0.88 |
PF02627 | CMD | 0.88 |
PF00072 | Response_reg | 0.88 |
COG ID | Name | Functional Category | % Frequency in 113 Family Scaffolds |
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COG3391 | DNA-binding beta-propeller fold protein YncE | General function prediction only [R] | 43.36 |
COG3386 | Sugar lactone lactonase YvrE | Carbohydrate transport and metabolism [G] | 43.36 |
COG0039 | Malate/lactate dehydrogenase | Energy production and conversion [C] | 8.85 |
COG2825 | Periplasmic chaperone for outer membrane proteins, Skp family | Cell wall/membrane/envelope biogenesis [M] | 1.77 |
COG2128 | Alkylhydroperoxidase family enzyme, contains CxxC motif | Inorganic ion transport and metabolism [P] | 0.88 |
COG4123 | tRNA1(Val) A37 N6-methylase TrmN6 | Translation, ribosomal structure and biogenesis [J] | 0.88 |
COG4122 | tRNA 5-hydroxyU34 O-methylase TrmR/YrrM | Translation, ribosomal structure and biogenesis [J] | 0.88 |
COG3824 | Predicted Zn-dependent protease, minimal metalloprotease (MMP)-like domain | Posttranslational modification, protein turnover, chaperones [O] | 0.88 |
COG3186 | Phenylalanine-4-hydroxylase | Amino acid transport and metabolism [E] | 0.88 |
COG2518 | Protein-L-isoaspartate O-methyltransferase | Posttranslational modification, protein turnover, chaperones [O] | 0.88 |
COG1486 | Alpha-galactosidase/6-phospho-beta-glucosidase, family 4 of glycosyl hydrolase | Carbohydrate transport and metabolism [G] | 0.88 |
COG0776 | Bacterial nucleoid DNA-binding protein IHF-alpha | Replication, recombination and repair [L] | 0.88 |
COG0599 | Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family | General function prediction only [R] | 0.88 |
COG0391 | Archaeal 2-phospho-L-lactate transferase/Bacterial gluconeogenesis factor, CofD/UPF0052 family | Carbohydrate transport and metabolism [G] | 0.88 |
COG0225 | Peptide methionine sulfoxide reductase MsrA | Posttranslational modification, protein turnover, chaperones [O] | 0.88 |
COG0188 | DNA gyrase/topoisomerase IV, subunit A | Replication, recombination and repair [L] | 0.88 |
COG0154 | Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase | Translation, ribosomal structure and biogenesis [J] | 0.88 |
COG0138 | AICAR transformylase/IMP cyclohydrolase PurH | Nucleotide transport and metabolism [F] | 0.88 |
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Name | Rank | Taxonomy | Distribution |
Unclassified | root | N/A | 93.81 % |
All Organisms | root | All Organisms | 6.19 % |
Visualization |
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Scaffold | Taxonomy | Length | IMG/M Link |
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3300009093|Ga0105240_10047006 | All Organisms → cellular organisms → Bacteria | 5463 | Open in IMG/M |
3300010379|Ga0136449_102271273 | Not Available | 788 | Open in IMG/M |
3300021170|Ga0210400_11257025 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium | 595 | Open in IMG/M |
3300021432|Ga0210384_11761275 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia | 525 | Open in IMG/M |
3300025903|Ga0207680_11071373 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 576 | Open in IMG/M |
3300031231|Ga0170824_119856868 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium | 521 | Open in IMG/M |
3300031754|Ga0307475_10323815 | All Organisms → cellular organisms → Bacteria | 1238 | Open in IMG/M |
3300032955|Ga0335076_10375956 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 1306 | Open in IMG/M |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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Habitat | Taxonomy | Distribution |
Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 23.01% |
Sediment | Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment | 11.50% |
Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 7.08% |
Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 4.42% |
Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 4.42% |
Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil | 3.54% |
Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 3.54% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 2.65% |
Surface Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil | 2.65% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 2.65% |
Avena Fatua Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere | 2.65% |
Groundwater Sediment | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment | 1.77% |
Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 1.77% |
Serpentine Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil | 1.77% |
Peatlands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil | 1.77% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 1.77% |
Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 1.77% |
Freshwater Microbial Mat | Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat | 0.89% |
Freshwater Wetlands | Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands | 0.89% |
Hot Spring Sediment | Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment | 0.89% |
Sediment (Intertidal) | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) | 0.89% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 0.89% |
Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 0.89% |
Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 0.89% |
Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere | 0.89% |
Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil | 0.89% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil | 0.89% |
Permafrost | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost | 0.89% |
Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 0.89% |
Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil | 0.89% |
Fen | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen | 0.89% |
Plant Litter | Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter | 0.89% |
Microbial Mat On Rocks | Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks | 0.89% |
Exposed Rock | Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock | 0.89% |
Host-Associated | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated | 0.89% |
Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere | 0.89% |
Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 0.89% |
Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 0.89% |
Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere | 0.89% |
Avena Fatua Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere | 0.89% |
Anaerobic Digestor Sludge | Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge | 0.89% |
Visualization |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Taxon OID | Sample Name | Habitat Type | IMG/M Link |
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2199352024 | Bare-fallow DEEP SOIL | Environmental | Open in IMG/M |
3300000364 | Soil microbial communities from Great Prairies - Iowa, Native Prairie soil | Environmental | Open in IMG/M |
3300004798 | Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-2 (Metagenome Metatranscriptome) | Host-Associated | Open in IMG/M |
3300005533 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 | Environmental | Open in IMG/M |
3300005537 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 | Environmental | Open in IMG/M |
3300005553 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 | Environmental | Open in IMG/M |
3300005617 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 | Host-Associated | Open in IMG/M |
3300005618 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 | Host-Associated | Open in IMG/M |
3300005713 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2) | Environmental | Open in IMG/M |
3300005764 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2) | Environmental | Open in IMG/M |
3300005836 | Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB | Environmental | Open in IMG/M |
3300005841 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 | Host-Associated | Open in IMG/M |
3300005843 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 | Host-Associated | Open in IMG/M |
3300006034 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105 | Environmental | Open in IMG/M |
3300006050 | Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014 | Environmental | Open in IMG/M |
3300006224 | Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 4 metaG | Environmental | Open in IMG/M |
3300006845 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 | Host-Associated | Open in IMG/M |
3300006847 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 | Host-Associated | Open in IMG/M |
3300006854 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4 | Host-Associated | Open in IMG/M |
3300006904 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3 | Host-Associated | Open in IMG/M |
3300007255 | Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 | Environmental | Open in IMG/M |
3300009012 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159 | Environmental | Open in IMG/M |
3300009038 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG | Environmental | Open in IMG/M |
3300009088 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG | Environmental | Open in IMG/M |
3300009089 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG | Environmental | Open in IMG/M |
3300009090 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG | Environmental | Open in IMG/M |
3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Host-Associated | Open in IMG/M |
3300009137 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158 | Environmental | Open in IMG/M |
3300009143 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 | Environmental | Open in IMG/M |
3300009147 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) | Host-Associated | Open in IMG/M |
3300009162 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2 | Host-Associated | Open in IMG/M |
3300009400 | Soil microbial community of the Robinson Ridge, Antarctica. Combined Assembly of Gp0139162, Gp0138857, Gp0138858 | Environmental | Open in IMG/M |
3300010041 | Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A | Environmental | Open in IMG/M |
3300010044 | Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60 | Environmental | Open in IMG/M |
3300010346 | AD_USMOca | Engineered | Open in IMG/M |
3300010373 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4 | Environmental | Open in IMG/M |
3300010379 | Sb_50d combined assembly | Environmental | Open in IMG/M |
3300011120 | Combined assembly of Microbial Forest Soil metaT | Environmental | Open in IMG/M |
3300011270 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG | Environmental | Open in IMG/M |
3300012189 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG | Environmental | Open in IMG/M |
3300012199 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG | Environmental | Open in IMG/M |
3300012203 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG | Environmental | Open in IMG/M |
3300012208 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG | Environmental | Open in IMG/M |
3300012209 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG | Environmental | Open in IMG/M |
3300012210 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG | Environmental | Open in IMG/M |
3300012211 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG | Environmental | Open in IMG/M |
3300012212 | Combined assembly of Hopland grassland soil | Host-Associated | Open in IMG/M |
3300012350 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG | Environmental | Open in IMG/M |
3300012355 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG | Environmental | Open in IMG/M |
3300012361 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG | Environmental | Open in IMG/M |
3300012469 | Combined assembly of Soil carbon rhizosphere | Host-Associated | Open in IMG/M |
3300012532 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG | Environmental | Open in IMG/M |
3300012683 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG | Environmental | Open in IMG/M |
3300012922 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG | Environmental | Open in IMG/M |
3300012923 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG | Environmental | Open in IMG/M |
3300012958 | Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG | Environmental | Open in IMG/M |
3300014326 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG | Host-Associated | Open in IMG/M |
3300014501 | Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly) | Environmental | Open in IMG/M |
3300018052 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2 | Environmental | Open in IMG/M |
3300018059 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_coex | Environmental | Open in IMG/M |
3300019487 | White microbial mat communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-4 metaG | Environmental | Open in IMG/M |
3300020057 | Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.MP5.IB-2 | Environmental | Open in IMG/M |
3300021170 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M | Environmental | Open in IMG/M |
3300021374 | Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R08 | Environmental | Open in IMG/M |
3300021432 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M | Environmental | Open in IMG/M |
3300021560 | Tropical forest soil microbial communities from Panama - MetaG Plot_4 | Environmental | Open in IMG/M |
3300024288 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal | Environmental | Open in IMG/M |
3300025310 | Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG (SPAdes) | Environmental | Open in IMG/M |
3300025903 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
3300025930 | Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) | Environmental | Open in IMG/M |
3300025938 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) | Host-Associated | Open in IMG/M |
3300026088 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) | Host-Associated | Open in IMG/M |
3300026551 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes) | Environmental | Open in IMG/M |
3300027799 (restricted) | Sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Sediment_Towuti_2014_0_MG | Environmental | Open in IMG/M |
3300027826 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes) | Environmental | Open in IMG/M |
3300027882 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes) | Environmental | Open in IMG/M |
3300027909 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes) | Host-Associated | Open in IMG/M |
3300027915 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes) | Environmental | Open in IMG/M |
3300028043 (restricted) | Sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Sediment_Towuti_2014_0.5_MG | Environmental | Open in IMG/M |
3300028906 | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2) | Environmental | Open in IMG/M |
3300031231 | Coassembly Site 11 (all samples) - Champenoux / Amance forest | Environmental | Open in IMG/M |
3300031726 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1 | Environmental | Open in IMG/M |
3300031746 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_20 | Environmental | Open in IMG/M |
3300031754 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515 | Environmental | Open in IMG/M |
3300031772 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_20 | Environmental | Open in IMG/M |
3300031939 | Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2 | Environmental | Open in IMG/M |
3300031952 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40 | Environmental | Open in IMG/M |
3300032046 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_40 | Environmental | Open in IMG/M |
3300032118 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_15 | Environmental | Open in IMG/M |
3300032156 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G14_0 | Environmental | Open in IMG/M |
3300032173 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_top | Environmental | Open in IMG/M |
3300032177 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_0 | Environmental | Open in IMG/M |
3300032401 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G03_0 | Environmental | Open in IMG/M |
3300032515 | FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data) | Environmental | Open in IMG/M |
3300032516 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0 | Environmental | Open in IMG/M |
3300032770 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5 | Environmental | Open in IMG/M |
3300032955 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5 | Environmental | Open in IMG/M |
3300033158 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1 | Environmental | Open in IMG/M |
3300033412 | Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC | Environmental | Open in IMG/M |
3300033414 | Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D4_B | Environmental | Open in IMG/M |
3300033557 | Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D2_B | Environmental | Open in IMG/M |
Geographical Distribution | |
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Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Protein ID | Sample Taxon ID | Habitat | Sequence |
deeps_00649780 | 2199352024 | Soil | MTQENIQIGAGVLAVILIVIIILRRKGKKKQQEDEF |
INPhiseqgaiiFebDRAFT_1055452182 | 3300000364 | Soil | MTQETVQIISGVLAVLLVGIIILRRKSKKKQQEDEF* |
Ga0058859_117455832 | 3300004798 | Host-Associated | LYCLVVPSRRSMTQETVQIIAGVLAVVLIGLIIMRRKGKKKTQDDEF* |
Ga0070734_1000022849 | 3300005533 | Surface Soil | MTQQNVVQIVAGILCVLLVAIIIMRRKNKKKSQQDEF* |
Ga0070730_109287301 | 3300005537 | Surface Soil | MTQSTVQIVAGVLCLLLIVVVIMRRKGKKKTEDDF* |
Ga0066695_104357592 | 3300005553 | Soil | MTQETVQIVAGVLLVVIIGILIMRRKGKKKQQEDEF* |
Ga0068859_1020987612 | 3300005617 | Switchgrass Rhizosphere | GDRSMTQETVQIVAGVLAVLLIGIIIMRRKNKKKTQEDEF* |
Ga0068864_1009312771 | 3300005618 | Switchgrass Rhizosphere | MTQETVQIIAGVLAVLIIGIVIMRRKNKKKTQDDEF* |
Ga0066905_1009556212 | 3300005713 | Tropical Forest Soil | MTQETVQIVAGVLAVLLIGIVIMRRKSKKKTQEDEF* |
Ga0066903_1004212053 | 3300005764 | Tropical Forest Soil | MTQQTVQIVAGVLAVILVGIVILRRKNKKSKGADDEF* |
Ga0066903_1007560492 | 3300005764 | Tropical Forest Soil | MSQETVQIVAGVLAVILIGIIIMRRKGKKKTEDEF* |
Ga0066903_1043256332 | 3300005764 | Tropical Forest Soil | MTQETVQIVAGVLALVLVAIIILRRKSKKKQQEDEF* |
Ga0074470_107240831 | 3300005836 | Sediment (Intertidal) | MTQETVQIIAGVLALLLVGIIILRRKNKKKQQEDEF* |
Ga0068863_1021818432 | 3300005841 | Switchgrass Rhizosphere | FSFPRGDRSMTQETVQIIAGVLAVLIIGIVIMRRKNKKKTQDDEF* |
Ga0068860_1012931881 | 3300005843 | Switchgrass Rhizosphere | LTFHRGDRSMTQETVQIVAGVLAVLIIGIIIMRRKNKKKTQEDEF* |
Ga0066656_102202181 | 3300006034 | Soil | MTQETVQIVAGVLLVVVIGILIMRRKNKKKTQEDEF* |
Ga0075028_1002798092 | 3300006050 | Watersheds | MSSETVQIIAGLLCVVLVGVIIMRRKTKKKTDQQDEF* |
Ga0079037_1024777742 | 3300006224 | Freshwater Wetlands | LEDLAHVATETIVQIVSGVLAVACVVIIIMRRKKKKKQQEDEF* |
Ga0075421_1009062264 | 3300006845 | Populus Rhizosphere | MTQETVQIVAGVLAVLIIGIIIMRRKNKKKTQEDEF* |
Ga0075421_1013523232 | 3300006845 | Populus Rhizosphere | MTQETVQIVSGALAVLLVGIIFLRRKNKKKQQEDEF* |
Ga0075431_1000097414 | 3300006847 | Populus Rhizosphere | MTQETVQLVAGALAVLLVGIIILRRKNKKKQQEDEF* |
Ga0075425_1004473923 | 3300006854 | Populus Rhizosphere | MTQETVQIVAGVLAVILIAIVILRRKNKKKQQEDEF* |
Ga0075424_1011046644 | 3300006904 | Populus Rhizosphere | MSQTTVQVISGILCVILIVIIILRRKSKKKTEDEF* |
Ga0099791_102180632 | 3300007255 | Vadose Zone Soil | MTQETVQIIAGVLAVLLIGIVIMRRKSKKKTQEDEF* |
Ga0066710_1002319343 | 3300009012 | Grasslands Soil | MSQTTVQVISGILCVILIVIIILRRKSKKKTEDEF |
Ga0066710_1003284701 | 3300009012 | Grasslands Soil | MTQETVQIVAGVLLVVVIGILIMRRKNKKKTQEDEF |
Ga0099829_108108031 | 3300009038 | Vadose Zone Soil | MTQETVQIVAGVLLAVIIGILIMRRKGKKKQQEDEF* |
Ga0099830_112353342 | 3300009088 | Vadose Zone Soil | MTQETVQIIAGVLAVLLIGIIIMRRKSKKKTQEDEF* |
Ga0099828_104284902 | 3300009089 | Vadose Zone Soil | MTQETVQLIAGALAVLLIGIIILRRKNKKKQQDDEF* |
Ga0099827_109723592 | 3300009090 | Vadose Zone Soil | MTQETVQIIAGVLAVLIIGIVVMRRKSKKKTQEDEF* |
Ga0105240_100470062 | 3300009093 | Corn Rhizosphere | MTQSTVQIVAGILCLAVIAIIIMRRKGKKKSEDEF* |
Ga0066709_1009387402 | 3300009137 | Grasslands Soil | MTQETVQIISGALAVLLVGIIFLRRKSKKKEQEDEF* |
Ga0099792_104571842 | 3300009143 | Vadose Zone Soil | MSSETVQIIAGVLCIVLVGVIIMRRKNKKKTDQQDEF* |
Ga0099792_107165731 | 3300009143 | Vadose Zone Soil | DLSMTQETVQIVAGVLLVVIIGILIMRRKGKKKQQKDEF* |
Ga0099792_107916102 | 3300009143 | Vadose Zone Soil | MTQETVQIIAGVLAVLIIGIVIMRRKNKKKTQEDEF* |
Ga0114129_114014872 | 3300009147 | Populus Rhizosphere | MTQETVQIVAGVLAVLLIGIVIMRRKNKKKTQEDEF* |
Ga0075423_115510572 | 3300009162 | Populus Rhizosphere | MTQETVQLVAGALAVLLVGIIILRRKNKKKHQEDEF* |
Ga0116854_10357092 | 3300009400 | Soil | MSQTTVQIIAGVLCVLLIVVIIMRRKSKKKVDDDF* |
Ga0126312_108942521 | 3300010041 | Serpentine Soil | MTQETVQLVAGVLAVLLVGIIILRRKSKKKQEDEF* |
Ga0126310_105625312 | 3300010044 | Serpentine Soil | MTQETVQLVAGALAVLLVGIIILRRKNKKKQQEDDF* |
Ga0116239_105803311 | 3300010346 | Anaerobic Digestor Sludge | QQGSDTVVKVVCGVLAVVLIGIVILRRKSKKKQEDEF* |
Ga0134128_1000006299 | 3300010373 | Terrestrial Soil | MIQAALTPENVKLISGILAVVLVGIIIMRRKGKKKTEDEF* |
Ga0136449_1022712731 | 3300010379 | Peatlands Soil | RTEIIMTQTTVQIVAGVLCVVLIAIVILRRKSKKKTEDDF* |
Ga0136449_1032042571 | 3300010379 | Peatlands Soil | MSQETVQIIAAVLAVVIIGVIIMRRKGGKKKQEDEF* |
Ga0150983_124370552 | 3300011120 | Forest Soil | MSQETVQIIAAVLAVVLIGIIIMRRKGGKKKQEDEF* |
Ga0137391_109362332 | 3300011270 | Vadose Zone Soil | MNQQTVQIIAGVLCVIIIAVIVLRRKGKKKQEDEF* |
Ga0137388_101996182 | 3300012189 | Vadose Zone Soil | MTQETVQLIAGALAVLLVGIIILRRKNKKKQQDDEF* |
Ga0137383_110421861 | 3300012199 | Vadose Zone Soil | MTQETVQIIAGVLAVLIIGIVIMRRKSKKKTQEDEF* |
Ga0137399_106242232 | 3300012203 | Vadose Zone Soil | MVTEENIKIIAAVLAVVLIAIIIMRRKNKKKQQDDEF* |
Ga0137376_116104542 | 3300012208 | Vadose Zone Soil | MSQETVQIVAGVLLVVIIGIIIMRRKNKKKTQEDDF* |
Ga0137379_104485493 | 3300012209 | Vadose Zone Soil | MTQETVRIISGVLAVLLVGLIVLRRKSKKKQQEDEF* |
Ga0137378_106248412 | 3300012210 | Vadose Zone Soil | MTQETFQIIAGVLAVLIIGIVIMRRKSKKKTQEDEF* |
Ga0137377_112309891 | 3300012211 | Vadose Zone Soil | MTQETVQIIAGVLAVVLIAIIILRRKSKKKQQEDEF* |
Ga0137377_116837802 | 3300012211 | Vadose Zone Soil | MTQETVQIVAGVLLAVIIGILIMRRKSKKKQQEDEF* |
Ga0150985_1173620692 | 3300012212 | Avena Fatua Rhizosphere | MTQETVQIVAGVLLVVIIGILIMRRKSKKKTQEDDF* |
Ga0150985_1208654952 | 3300012212 | Avena Fatua Rhizosphere | MTQETVQIIAGVLAVVLIGLIIMRRKSKKKTQEDEF* |
Ga0150985_1215156012 | 3300012212 | Avena Fatua Rhizosphere | MTQETVQIIAGILAVVLIGLIIMRRKGKKKTQEDEF* |
Ga0137372_107009222 | 3300012350 | Vadose Zone Soil | MTQETVQIIAGVLAVLLIGIIVMRRKSKKKTQEDEF* |
Ga0137369_105293791 | 3300012355 | Vadose Zone Soil | TRIAQAGEDMSQEMVRIIAGVLAIILVVIIIMRRKARKKTEDEF* |
Ga0137360_104160072 | 3300012361 | Vadose Zone Soil | MTQETVQIVAGVLLVVIIGILIMSRKGKKKQQEDEF* |
Ga0150984_1022675592 | 3300012469 | Avena Fatua Rhizosphere | MTQETVQIVAGVLLVVIIGILIMRRKNKKKTQEDDF* |
Ga0137373_110368232 | 3300012532 | Vadose Zone Soil | EEDSMTQETVQIIAGVLAVLLIGIIVMRRKSKKKTQEDEF* |
Ga0137398_109762852 | 3300012683 | Vadose Zone Soil | MSQETVQIVAGVLLVVIIGILIMRRKNKKKTQEDDF* |
Ga0137394_111990351 | 3300012922 | Vadose Zone Soil | RSIAMTQETVQLVAGALAVLLVGIIILRRKNKKKQQQDDEF* |
Ga0137359_116418641 | 3300012923 | Vadose Zone Soil | MTQETVQIIAGVLAVLIIGIVILRRNSKKKTQDDEF* |
Ga0164299_113620892 | 3300012958 | Soil | MTQETVQIVAGVLAVLIIGIIIMRRKNKKKTQDDEF* |
Ga0157380_119819902 | 3300014326 | Switchgrass Rhizosphere | MTQETVQIVAGVLAVLLIGIIIMRRKNKKKTQEDEF* |
Ga0182024_103613983 | 3300014501 | Permafrost | MSQETVQIIAAVLAVVIIGVIVMRRKGGKKKQEDEF* |
Ga0184638_12669632 | 3300018052 | Groundwater Sediment | MTEETVKIVAGVLAVLIIGIIIMRRKSKKKTQEDEF |
Ga0184615_104624162 | 3300018059 | Groundwater Sediment | VDANTIVQVVSAVLAVLCVVIIIMRRKKKKKQQDEF |
Ga0187893_1000118426 | 3300019487 | Microbial Mat On Rocks | VNQETVQIISAVLAVLCVVIIILRRKGKKKDSQQDEF |
Ga0163151_102206232 | 3300020057 | Freshwater Microbial Mat | MTPETVQIISAVLCVALVGIIIMRRKSKKKDAPQDDF |
Ga0210400_112570252 | 3300021170 | Soil | LAQVTPQNIVQLIAGILCLALIGILIMRRKGKKKHQEDEF |
Ga0213881_100611702 | 3300021374 | Exposed Rock | MTSQGTVQLIAAILLVVVIAVIIMRRKGRKKQQEDEF |
Ga0210384_117612752 | 3300021432 | Soil | PVTPQNIVQLIAGILCLALIGILIMRRKGKKKHQEDEF |
Ga0126371_109152872 | 3300021560 | Tropical Forest Soil | MSQETVQIVAGVLAVILIGIIIMRRKGKKKTEDEF |
Ga0179589_101971192 | 3300024288 | Vadose Zone Soil | MSSETVQIIAGVLCIVLVGVIIMRRKNKKKTDQQDEF |
Ga0209172_100292555 | 3300025310 | Hot Spring Sediment | MTQETVQIVAAILAVLCVVAIVIRRKNKKKTTSQDDF |
Ga0207680_110713732 | 3300025903 | Switchgrass Rhizosphere | MTQSTVQIVAGILCLAVIAIIIMRRKGKKKSEDEF |
Ga0207701_102881282 | 3300025930 | Corn, Switchgrass And Miscanthus Rhizosphere | MTQETVQIIAGVLAVLIIGIVIMRRKNKKKTQDDEF |
Ga0207704_106354572 | 3300025938 | Miscanthus Rhizosphere | MTQETVQIVAGVLAVLIIGIIIMRRKNKKKTQEDEF |
Ga0207641_117341371 | 3300026088 | Switchgrass Rhizosphere | PFSCYTAFSFPRGDRSMTQETVQIIAGVLAVLIIGIVIMRRKNKKKTQDDEF |
Ga0209648_102579093 | 3300026551 | Grasslands Soil | MTQENIQIGAGVLAVILILIIILRRKGKKKQQEDEF |
(restricted) Ga0233416_101057482 | 3300027799 | Sediment | MTQETVQIVAGILCIVLVVIIILRRKVKKKKQEDEF |
Ga0209060_1000044949 | 3300027826 | Surface Soil | MTQQNVVQIVAGILCVLLVAIIIMRRKNKKKSQQDEF |
Ga0209590_102309863 | 3300027882 | Vadose Zone Soil | MTQETVQLIAGALAVLLIGIIILRRKNKKKQQDDEF |
Ga0209382_113407622 | 3300027909 | Populus Rhizosphere | MTQETVQIVSGALAVLLVGIIFLRRKNKKKQQEDEF |
Ga0209069_105116022 | 3300027915 | Watersheds | DTTVQIVAGVLLVVIIAVIVMRRKGKKSSSSEDEF |
(restricted) Ga0233417_101159961 | 3300028043 | Sediment | LDQSTVQIIAGILCVVCVAIIIMRRKAKKKQSQEDDC |
Ga0308309_113912412 | 3300028906 | Soil | MSQETVQLVAAILAVVLIGIIIMRRKGSKKKQEDEF |
Ga0170824_1198568682 | 3300031231 | Forest Soil | MTPQNIVQLVAGILCLALIGILIMRRKGKKKHQEDEF |
Ga0302321_1019967192 | 3300031726 | Fen | MDQTTVQIIAGVLLVVVIGVIIMRRKGKKTTSTEDDF |
Ga0315293_111810892 | 3300031746 | Sediment | VAPEIAVQIGCAVLAVLCVVIIIMRRKKKKKQQQEDEF |
Ga0307475_100258882 | 3300031754 | Hardwood Forest Soil | LAQVTPQNIVQLVAGILCLALIGILIMRRKAKKKHQEDEF |
Ga0307475_103238152 | 3300031754 | Hardwood Forest Soil | MTPQNIVQLIAGILCLALIGILIMRRKGKKKRQEDEF |
Ga0315288_101383211 | 3300031772 | Sediment | VAPEIAVQIGCAVLAVLCVVIIIMRRKKKKKKQQEDEF |
Ga0315288_113152792 | 3300031772 | Sediment | VDATTVVQLASAVLAVLCIAVIIMRRKKKKKQKQAEDDF |
Ga0308174_100208462 | 3300031939 | Soil | MIQAALTPENVKLISGILAVVLVGIIIVRRKGKKKTEDEF |
Ga0315294_110076881 | 3300031952 | Sediment | VAPETVVQIGCAVLAVLCVVIIIMRRKKKKKQQREDEF |
Ga0315289_100326766 | 3300032046 | Sediment | VAPETAVQIGCAVLAVLCVVIIIMRRKKKKKQQQEDEF |
Ga0315277_100675166 | 3300032118 | Sediment | VAPETAVQIGCAVLAVLCVVIIIMRRKKKKKQQEDEF |
Ga0315295_103199702 | 3300032156 | Sediment | VAPEIAVQIGCAVLAVLCVVIIIMRRKKKKKQQEDEF |
Ga0315268_123898932 | 3300032173 | Sediment | VAPENVVQIACAVLAVLCVVIIIMRRKKKKKKQEDEF |
Ga0315276_109814771 | 3300032177 | Sediment | VAPENVVQIACAVLAVLCVVIIIMRRKKKKKQQQEDEF |
Ga0315275_102887852 | 3300032401 | Sediment | VAPEIAVQIGCAVLAVLCVVIIIMRRKKKKKQQEDDF |
Ga0348332_122007022 | 3300032515 | Plant Litter | NYCMDAGTIQIIAAVLAVVLIGVIIMRRKGGKKKTDDDF |
Ga0315273_100091276 | 3300032516 | Sediment | VAPETVVQIGCAVLAVLCVVIIIMRRKKKKKQQEDEF |
Ga0335085_100197711 | 3300032770 | Soil | MTQATVQIVSGVLAVLLIVIVILRRKSKKKQEEDEF |
Ga0335076_103759562 | 3300032955 | Soil | MTQSTVQIIAGVLCVLVIVAIFLRRKGKKKTEDDF |
Ga0335077_120893552 | 3300033158 | Soil | MSQETIQIVSAVLAVVLIGIIIMRRKGKKKTEDEF |
Ga0310810_101916712 | 3300033412 | Soil | MTQETVQIIAGVLAVLLIGIIIMRRKSKKKTQEDEF |
Ga0316619_111100462 | 3300033414 | Soil | LEDLAHVATETIVQIVSGVLAVACVVIIIMRRKKKKKQQEDEF |
Ga0316617_1025754012 | 3300033557 | Soil | VATETIVQIVSGVLAVACVVIIIMRRKKKKKQQEDEF |
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