Metagenome / Metatranscriptome Family F082859

Basic Information
Family ID	F082859
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	91 residues
Representative Sequence	MQLRKYLAAPFAALLLTGASLANAAAPIDVTWNPSAAGITTAAPFTFDNVLINTYAAIDITGGGTAFSEQGFAQLTVFSNNGLPTSIPT
Number of Associated Samples	95
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	95.65 %
% of genes near scaffold ends (potentially truncated)	40.71 %
% of genes from short scaffolds (< 2000 bps)	38.94 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (60.177 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere (9.735 % of family members)
Environment Ontology (ENVO)	Unclassified (57.522 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (68.142 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 23.60% β-sheet: 37.08% Coil/Unstructured: 39.33%
Feature Viewer

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Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF01436	NHL	4.42
PF07589	PEP-CTERM	4.42
PF04392	ABC_sub_bind	2.65
PF00753	Lactamase_B	1.77
PF00881	Nitroreductase	0.88
PF00216	Bac_DNA_binding	0.88
PF13751	DDE_Tnp_1_6	0.88
PF02839	CBM_5_12	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	2.65
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	0.88

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.18 %
All Organisms	root	All Organisms	39.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.18 %
cellular organisms	root	All Organisms → cellular organisms	39.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.18 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	39.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.18 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	37.17 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.18 %
uncultured bacterium CSL12	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium CSL12	37.17 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.18 %
uncultured bacterium CSL12	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium CSL12	37.17 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.18 %
uncultured bacterium CSL12	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium CSL12	37.17 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.18 %
uncultured bacterium CSL12	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium CSL12	37.17 %
Massilia group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.18 %
uncultured bacterium CSL12	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium CSL12	37.17 %
Duganella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Duganella	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.18 %
uncultured bacterium CSL12	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium CSL12	37.17 %
Duganella aceris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Duganella → Duganella aceris	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002077\|JGI24744J21845_10067936	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium CSL12	650	Open in IMG/M
3300002459\|JGI24751J29686_10139675	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium CSL12	513	Open in IMG/M
3300004114\|Ga0062593_101429432	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium CSL12	741	Open in IMG/M
3300004463\|Ga0063356_102105929	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium CSL12	856	Open in IMG/M
3300005162\|Ga0066814_10080283	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium CSL12	585	Open in IMG/M
3300005328\|Ga0070676_10521452	All Organisms → cellular organisms → Bacteria	847	Open in IMG/M
3300005341\|Ga0070691_10265971	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium CSL12	925	Open in IMG/M
3300005354\|Ga0070675_100406471	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium CSL12	1215	Open in IMG/M
3300005445\|Ga0070708_101315672	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium CSL12	675	Open in IMG/M
3300005577\|Ga0068857_101669578	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium CSL12	623	Open in IMG/M
3300005618\|Ga0068864_100346605	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium CSL12	1400	Open in IMG/M
3300005840\|Ga0068870_10147029	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium CSL12	1384	Open in IMG/M
3300005843\|Ga0068860_100719630	Not Available	1009	Open in IMG/M
3300006237\|Ga0097621_100105663	All Organisms → cellular organisms → Bacteria	2374	Open in IMG/M
3300009553\|Ga0105249_10923905	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium CSL12	940	Open in IMG/M
3300009553\|Ga0105249_11562085	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium CSL12	732	Open in IMG/M
3300009610\|Ga0105340_1340501	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium CSL12	662	Open in IMG/M
3300010375\|Ga0105239_13293397	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium CSL12	526	Open in IMG/M
3300010397\|Ga0134124_12479730	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium CSL12	560	Open in IMG/M
3300011119\|Ga0105246_11880845	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium CSL12	574	Open in IMG/M
3300011332\|Ga0126317_10655453	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium CSL12	561	Open in IMG/M
3300012517\|Ga0157354_1059117	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium CSL12	572	Open in IMG/M
3300012901\|Ga0157288_10250623	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium CSL12	594	Open in IMG/M
3300012908\|Ga0157286_10105625	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium CSL12	835	Open in IMG/M
3300013100\|Ga0157373_11249959	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium CSL12	561	Open in IMG/M
3300014326\|Ga0157380_11554823	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium CSL12	716	Open in IMG/M
3300014326\|Ga0157380_11901312	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium CSL12	656	Open in IMG/M
3300014969\|Ga0157376_10888008	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium CSL12	909	Open in IMG/M
3300015200\|Ga0173480_10449575	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium CSL12	760	Open in IMG/M
3300015371\|Ga0132258_11354810	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium CSL12	1798	Open in IMG/M
3300018073\|Ga0184624_10106874	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium CSL12	1202	Open in IMG/M
3300018074\|Ga0184640_10371573	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium CSL12	647	Open in IMG/M
3300019263\|Ga0184647_1430183	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium CSL12	569	Open in IMG/M
3300023067\|Ga0247743_1069857	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium CSL12	531	Open in IMG/M
3300025908\|Ga0207643_10328479	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Duganella → Duganella aceris	957	Open in IMG/M
3300025917\|Ga0207660_11043271	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium CSL12	667	Open in IMG/M
3300025925\|Ga0207650_10067679	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium CSL12	2680	Open in IMG/M
3300025925\|Ga0207650_11699774	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium CSL12	535	Open in IMG/M
3300025926\|Ga0207659_10461634	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium CSL12	1071	Open in IMG/M
3300026121\|Ga0207683_11521021	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium CSL12	618	Open in IMG/M
3300030993\|Ga0308190_1141962	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium CSL12	564	Open in IMG/M
3300031847\|Ga0310907_10815710	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium CSL12	523	Open in IMG/M
3300031858\|Ga0310892_11352373	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium CSL12	511	Open in IMG/M
3300032075\|Ga0310890_11375629	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium CSL12	579	Open in IMG/M
3300034149\|Ga0364929_0164923	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium CSL12	723	Open in IMG/M
3300034150\|Ga0364933_077714	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium CSL12	832	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	60.18%
Environmental	Environmental	39.82%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	60.18%
Terrestrial	Environmental → Terrestrial	31.86%
Aquatic	Environmental → Aquatic	7.96%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	30.09%
Soil	Environmental → Terrestrial → Soil	29.20%
Rhizoplane	Host-Associated → Plants → Rhizoplane	27.43%
Freshwater	Environmental → Aquatic → Freshwater	4.42%
Sediment	Environmental → Aquatic → Sediment	3.54%
Floodplain	Environmental → Terrestrial → Floodplain	2.65%
Roots	Host-Associated → Plants → Roots	2.65%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	23.01%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	21.24%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	18.58%
Soil	Host-Associated → Plants → Rhizosphere → Soil	11.50%
Loam	Environmental → Terrestrial → Soil → Loam	6.19%
Soil	Host-Associated → Plants → Rhizoplane → Soil	4.42%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.54%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.65%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	2.65%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	2.65%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.77%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	21.24%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	18.58%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.27%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	11.50%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	7.08%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.19%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	4.42%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.54%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.65%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	2.65%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	2.65%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	1.77%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.77%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.89%

Habitat	Taxonomy	Distribution
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	9.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	7.08%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	5.31%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	5.31%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	5.31%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.42%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	4.42%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.42%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	4.42%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	3.54%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	2.65%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	2.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.65%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	2.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.65%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	1.77%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.77%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	1.77%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.77%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.89%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.89%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.89%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.89%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.89%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002077	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3	Host-Associated	Open in IMG/M
3300002459	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005162	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300009011	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009610	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700	Environmental	Open in IMG/M
3300010147	Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300011332	Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012517	Unplanted soil (control) microbial communities from North Carolina - M.Soil.6.yng.070610	Environmental	Open in IMG/M
3300012901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S119-311C-1	Environmental	Open in IMG/M
3300012905	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S013-104B-2	Environmental	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012909	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S149-409B-1	Environmental	Open in IMG/M
3300012912	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300019263	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021951	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300023067	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S221-509R-5	Environmental	Open in IMG/M
3300025290	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300030993	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_185 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031123	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_196 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300034149	Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17	Environmental	Open in IMG/M
3300034150	Sediment microbial communities from East River floodplain, Colorado, United States - 25_j17	Environmental	Open in IMG/M
3300034417	Sediment microbial communities from East River floodplain, Colorado, United States - 17_s17	Environmental	Open in IMG/M
3300034660	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034662	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034666	Metatranscriptome of lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034672	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24R2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24744J21845_100679361	3300002077	Corn, Switchgrass And Miscanthus Rhizosphere	MQLRKYLAAPFAALLLTGASLANAAAPIDVTWNPSGAGITTGGPFTFDNVLINTYANIDITGGGTAFSEQGFARLTVFSDNGLPTAIPTSGVPGGTPYSLYISFTATGTQT
JGI24751J29686_101396751	3300002459	Corn, Switchgrass And Miscanthus Rhizosphere	MQLRKYLAAPFAALLLTGASLANAAAPIDVTWNPSGAGITTGGPFTFDNVLINTYANIDITGGGTAFSEQGFARLTVFSDNGLPTAIPTSGVPGGTPYSLYISFTA
Ga0062593_1014294321	3300004114	Soil	MQLRKYLAAPFAALLLTGASLANAAAPIDVRWNPSAVPGLSTAGAFTFDNILLNSYAAIDITGGGTTFSEQGFVS
Ga0063356_1021059291	3300004463	Arabidopsis Thaliana Rhizosphere	MQLRKYLAAMFAALLLTGASFANAAAPIDVTWNPSAAGVSTQGAFTFDNILINSYAAIDITGGGTTFSEQGFVTLFTFSNNNLATSIPTAGFPGGTPYS
Ga0066814_100802831	3300005162	Soil	MQLRKYLAAPFAALLLTGASLANAAAPLDVRWNPSAAGITNAAPFTFDNVLINTYAAIDITGGGTAFSEQGFAV
Ga0066809_100856541	3300005168	Soil	MQLRKYLAAPFAALLLTGASLANAAAPIDVRWNPSATPISTAAPFTFDNILINTYAAIDITGGGTAFSEQGFAQLTVFSNNGLPTSIPTASFP
Ga0065715_107922451	3300005293	Miscanthus Rhizosphere	MQLENKKYFAAVSAALLFTGSSLANAAAPIDVTWNPSATPISTQGAFTFDNILINTYATIDITGGGTTFSEQGFARLTVFSNNGLPT
Ga0070676_105214522	3300005328	Miscanthus Rhizosphere	MKLSKYLAAPFAALLLTGASLANAAAPIDVTWNPSGAGITTGGPFTFDNVLINTYANIDITGGGTAFSEQ
Ga0070690_1000391934	3300005330	Switchgrass Rhizosphere	MQLRKYLAAPLAALLLTGASLANAAAPIDVRWNPSATPISTAAPFTFDNILINTYAAIDITGGGTAFSEQGFAQLTVFSN
Ga0070677_100990931	3300005333	Miscanthus Rhizosphere	MQLRKYLAAPFAALLLTGASLANAAAPIDVTWNPSAVPGLSTAGAFTFDNILLNSYAAIDITGGGTTFSERGFIDLAAFSNNNVFTSI
Ga0070691_102659711	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MQLRKYLAAPFAALLLTGASLANAAAPIDVTWNPSGAGITNGGPFTFDNVLINTYANIDITGGGTAFSEQGFARLTVFSDNGLPTAIPTSGLPGGTPYSLYFSFTATGT
Ga0070692_111580082	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MQLRKYFTAPFAALLLTGASLANAATPIDVTWNPTGAGITNAGAFTFDNVLINTYANIDITGGGTAFSEQGFARLTVFSDNGLPTAIPTS
Ga0070669_1011391201	3300005353	Switchgrass Rhizosphere	MQLRKYFTAPFAALLLTGASLANAATPIDVTWNPTGAGITNAGAFTFDNVLINTYANIDITGGGTAFSEQGFARLTVFSDNGLPTAVPTAGLPG
Ga0070675_1004064712	3300005354	Miscanthus Rhizosphere	MQLKNKKYFAAVSAALLFTGSSLANAAAPIDVTWNPSATPISTQGAFTFDNILINTYATIDITGGGTTFSEQGFARLTVFSNNGLPTSVPTAGVPGGTPYSLYLSFTATG
Ga0070675_1012655371	3300005354	Miscanthus Rhizosphere	MQLRKYLAAPFAALLLTGASLANAAAPIDVTWNPSGAGISTAGPFTFDNVLINTYANIDITGGGTAFSEQGFARMTVFSDNGLPTSIPTAGFPGGSTPYSLY
Ga0070671_1002754661	3300005355	Switchgrass Rhizosphere	MQLRKYLAAPFAALLLTGASLANAAAPIDVTWNPSGAGITTGGPFTFDNVLINTYANIDITGGGTAFSEQGFARLTVFSDNGLPTAIPTSG
Ga0070700_1010533332	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MQLRKYFTAPFAALLLTGASLANAATPIDVTWNPTGAGITNAGAFTFDNVLINTYANIDITGGGTAFSEQGFARLTVFSD
Ga0070694_1008053441	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MQLRKYLAAPFAALLLTGASLANAAAPIDVTWNPSAAGITTAAPFTFDNVLINTYAAIDITGGGTAFSEQGFARLTVFSNNGLPTSIPTASFPGGT
Ga0070708_1013156721	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MQLRKYLAAPFAALLLTGASLANAAAPIDVTWNPSGAGISTAGPFTFDNVLINTYAAIDITGGGTAFSEQGFAQLTVFSNNGLPTSIPTASFPGGTAYTLYISFTAT
Ga0070678_1001635111	3300005456	Miscanthus Rhizosphere	MQLRKYLAAPFAALLLTGASLANAAAPIDVTWNPSGAGISTAGPFTFDNVLINTYANIDITGGGTAFSEQGFARMTVFSDNGLPTAIPTAGVPGGTPYS
Ga0070678_1009221651	3300005456	Miscanthus Rhizosphere	MQLRKYLAAPFVALMLTGASLANAAAPIDVTWNPSAAGISTAGAFTFDNILLNSYAAIDITGGGTTFSEQGFVSLAGF
Ga0070678_1018364661	3300005456	Miscanthus Rhizosphere	MQLKNKKYFAAVSAALLFTGSSLANAAAPIDVTWNPSATPISTQGAFTFDNILINTYATIDITGGGTTFSEQGFARLTVFSNNGLPT
Ga0068853_1015675722	3300005539	Corn Rhizosphere	MQLRKYLAAPFAALLLTGASLANAAAPIDVTWNPSGAGITNGGPFTFDNVLINTYANIDITGGGTAFSEQGFARLTVFSDNGLPTA
Ga0070672_1005030132	3300005543	Miscanthus Rhizosphere	MQLKKYLAAPFAALLLTGASLANAAAPIDVTWNPSAVPGLSTAGAFTFDNILLNSYAAIDITGGGTTFSEQGFVSLAGFSNNNVFTSIPTAGFPGGA
Ga0068857_1016695782	3300005577	Corn Rhizosphere	MQLRKYLAAPLAALLLTGASLANAAAPIDVRWNPSATPISTAAPFTFDNILINTYAAIDITGGGTAFSEQGFAELTVFSNNGLPTSIPTASFPGGTAYSLYIS
Ga0068852_1017462221	3300005616	Corn Rhizosphere	MQLRKYLAAPFAALLLTGASLANAAAPIDVTWNPSAVAGLSSAGAFTFDNVLINTYGNIDITNGGTAFSEQGFARLTVFSNNGLPTSIPTASF
Ga0068859_1016210971	3300005617	Switchgrass Rhizosphere	MQLRKYLAAPFAALLLTGASLANAAAPIDVTWNPSGAGISTAGPFTFDNVLINTYANIDITGGGTAFSEQGFARMTVFSDNGLPTSIP
Ga0068859_1019668801	3300005617	Switchgrass Rhizosphere	MQLRKYFTAPFAALLLTGASLANAATPIDVTWNPTGAGITNAGAFTFDNVLINTYANIDITGGGTAFSEQGFARLTVFSDNGLPTA
Ga0068864_1003466054	3300005618	Switchgrass Rhizosphere	MQLRKYLAAPFAALLLTGASLANAAAPIDVTWNPSAAGISTAGAFTFDNILLNSYAAIDITGGGTTFSEQGFVSLAAFSNNNVFTSIPTAGFPGGATPYSLYISFTAAGTQSP
Ga0068870_101470293	3300005840	Miscanthus Rhizosphere	MQLRKYLAAPFAALLLTGASLANAAAPIDVTWNPSAAGITTAAPFTFDNVLINTYAAIDITGGGTAFSEQGFAQLTVFSNNGLPTSIPTASFPGGTAYSLYIS
Ga0068870_110492061	3300005840	Miscanthus Rhizosphere	MQLRKYLAAPFAALLLTGASLANAAAPIDVTWNPSGAGISTAGPFTFDNVLINTYANIDITGGGTAFSEQGFARMTVFSDNGLPTSIPTAGFPGGSTPYS
Ga0068863_1005382024	3300005841	Switchgrass Rhizosphere	MQLRKYLAAPFAALLLTGASLANAAAPIDVTWNPSAAGISTAGAFTFDNILLNSYAAIDITGGGTTFSEQGFVSLAGFS
Ga0068860_1007196302	3300005843	Switchgrass Rhizosphere	MQLKKYLAAPFAALLLTGASLANAAAPIDVTWNPSAVPGLTTSAPFTFDNVLINTYAAIDITGGGTAFSEQGFA
Ga0068860_1018006301	3300005843	Switchgrass Rhizosphere	MQLKNKKYFAAVSAALLFTGSSLANAAAPIDVTWNPSATPISTQGAFTFDNILINTYATIDITGGGTTFSEQGFARL
Ga0097621_1001056633	3300006237	Miscanthus Rhizosphere	MQLRKYLMAPLAALLLTGASLSNAAAPIDVTWNPSAVPGLSTAGAFTFDNILLNSYAAIDITGGGTTFSEQGFVSLA
Ga0105251_105183971	3300009011	Switchgrass Rhizosphere	MQLRKYLAAPFAALLLTGASLANAAAPIDVTWNPSAVPGLSTAGAFTFDNILLNSYAAIDITGGGTTFSEQGFVSLAGFSDNNVFTSIPTAGFPGG
Ga0111539_103975002	3300009094	Populus Rhizosphere	MQLRKYFTAPFAALLLTGASLANAATPIDVTWNPTGAGITNAGAFTFDNVLINTYANIDITGGGTAFSEQGFARLTVFSDNGLPTAVPTAGLPGGTPYS
Ga0105245_106575461	3300009098	Miscanthus Rhizosphere	MQLRKYLAAPFAALLLTGASLANAAAPIDVRWNPSATPISTAAPFTFDNILINTYAAIDITGGGTAFSEQGFAELTVFSNNGLPTSIPTASFPGGTPYSL
Ga0105243_100343015	3300009148	Miscanthus Rhizosphere	MQLRKYLAAPFAALLLTGASLANAAAPIDVTWNPSAAGITTAAPFTFDNVLINTYAAIDITGGGTAFSEQGFARLTVF
Ga0105248_120598072	3300009177	Switchgrass Rhizosphere	MQLKNKKYFAAVSAALLFTGASLANAAAPIDVTWNPSATSISTQGAFTFDNILINTYATIDITGGGTTFSEQGFARLTFFSNNGLPTSVPTAGVPGGT
Ga0105248_123606271	3300009177	Switchgrass Rhizosphere	MQIRKYFATMFAALLFSGASVANAALLDLTWNPTAIGLSAGGPFTFDNVLINTYGNIDITGGGAAFSEQGFARLTVFSDNGLP
Ga0105249_109239053	3300009553	Switchgrass Rhizosphere	MQLRKYLAAPFAALLLTGASLANAAAPIDVTWNPSAAGITTAAPFTFDNVLINTYAAIDITGGGTAFSEQGFARLTVFSNNGLPTSIPTASFPGGTAYSLYISFTATGTQT
Ga0105249_115620851	3300009553	Switchgrass Rhizosphere	MQLKNKKYFAAVSAALLFTGSSLANAAAPIDVTWNPSATPISTQGAFTFDNILINTYATIDITGGGTTFSEQGFARLTVFSNNGLPTSVPTAGVPGGTPYSLYLS
Ga0105340_13405012	3300009610	Soil	MQLRKYLAAPFAALLLTGASLANAAAPIDVTWNPSAAGITTAAPFTFDNILINTYAAIDITGGGTAFSEQGFAQLTVFSNNGFPTSIPTASFPGGTPYSLYFSFTATGT
Ga0126319_10579712	3300010147	Soil	MQLRKYLAAPFAALLLTGASLANAAAPIDVRWNPSAAGITNAAPFTFDNVLINTYAAIDITGGGTAFSEQGFARLTVFSDNGLPTSIPTAGFPGGAT
Ga0105239_132933971	3300010375	Corn Rhizosphere	MQLRKYLAAPFAALLLTGASLANAAAPIDVTWNPSGAGITNGGPFTFDNVLINTYANIDITGGGTAFSEQGFARLTVFSDNGLPTAIPTSGVPGGTPFSLYISFTAT
Ga0134124_108091881	3300010397	Terrestrial Soil	MQLRKYLAASFAALLLTGASLANAVAPIDVRWNPSAVPGLSTAGAFTFDNVILNSYAAIDITGGGTAFSEQGFIDLAGFTNNNVFTQIPTAGFPG
Ga0134124_124797301	3300010397	Terrestrial Soil	MQIRKYFATMFAALLFSGASVANAALLDLTWNPTAIGLSAGGPFTFDNVLINTYGNIDITAGGTAFTEQGFARLTVFSDNGLPTAIPTAGLPGNTPYTLYFDFTATGTQT
Ga0105246_118808452	3300011119	Miscanthus Rhizosphere	MQLRKYLAAPFAALLLTGASLANAAAPIDVTWNPSATPISTAAPFTFDNILINTYAAIDITGGGTAFSEQGFAQLTVFSNNGLPTSIPTASFPGGTPYSLYFSF
Ga0126317_106554531	3300011332	Soil	MQLRKYLAAPLAALLLTGASLANAAAPIDVRWNPSAVPGLSTAGAFTFDNILINTYSAIDITAGGTAFTEQGFVSLAAFSNNNVFTQIPTAGFPGGATPYSLYMSFTAAGTQS
Ga0157354_10591171	3300012517	Unplanted Soil	MQLRKYLAAPLAALLLTGASLANAAAPIDVTWNPSATPISTAAPFTFDNILINTYAAIDITGGGTAFSEQGFAQLT
Ga0157288_102506232	3300012901	Soil	MQLRKYLAAPLAALLLTGASLANAAAPIDVRWNPSATPISTAAPFTFDNILINTYAAIDITGGGTAFSEQGF
Ga0157296_100297192	3300012905	Soil	MQLRKYFTAPFAALLLTGASLANAAAPIDVTWNPSAVPGLSTAGAFTFDNILLNSYAAIDITGGGTTFSEQGFVSLAGFSDNNVFTQIPTAGFPGG
Ga0157286_101056252	3300012908	Soil	MQLRKYLAAPFAALLLTGASLANAAAPIDVTWNPSAVAGLSSAGAFTFDNVLINTYGNIDITNGGTVFSEQGFARLTAFSNNGLPTSIPTASFPGGTPYSLYFQFTATGT
Ga0157290_101432301	3300012909	Soil	MQLRKYLAAPFAALLLTGASLANAAAPIDVTWNPSATPISTAAPFTFDNILINTYAAIDITGGGTAFSEQGFAELTVFSNNGLPTSIPTA
Ga0157306_101557581	3300012912	Soil	MQLRKYLAASFTALLLTGASLANAAAPIDVTWNPSGAGITTGGPFTFDNVLINTYANIDITGGGTAFSEQGFARLTVFSDNGLPTAI
Ga0164305_108529462	3300012989	Soil	MQLRKYLAAPFAALLLTGASLANAAAPLDVRWNPSAAGITNAAPFTFDNVLINTYANIDITGGGTAFSEQGFARMTVFSDNGLPTS
Ga0157373_112499591	3300013100	Corn Rhizosphere	MQLRKYLAAPFAALLLTGASLANAAAPIDVTWNPSGAGISTAGPFTFDNVLINTYANIDITGGGTAFSEQGF
Ga0157374_103602041	3300013296	Miscanthus Rhizosphere	MQLRKYLAAPFAALLLTGASLANAAAPIDVTWNPSGAGITNGGPFTFVNVLINTYANIDITGGGTAFSEQGFARLTVFSDNG
Ga0157375_102434523	3300013308	Miscanthus Rhizosphere	MQLRKYLAAPLAALLLTGASLANAAAPIDVTWNPSATPISTAAPFTFDNILINTYAAIDITGGGTAFSEQGFAELTVFSNNGLPTSIPTAS
Ga0157375_102710516	3300013308	Miscanthus Rhizosphere	MQLRKYLAAPFAALLLTGASLANAAAPIDVTWNPSAAGITTAAPFTFDNVLINTYAAIDITGGGTAFSEQGFAELTVFSNNGLPTSIPTAS
Ga0163163_111457012	3300014325	Switchgrass Rhizosphere	MQLRKYLAAPFAALLLTGASLANAAAPIDVTWNPSGAGITTGGPFTFDNVLINTYANIDITGGGTAFSEQGFARLTVF
Ga0163163_122611091	3300014325	Switchgrass Rhizosphere	MQLRKYLATMFAALLFTGASFANAALLDLTWNPSGAGISTGGPFTFDNVLINTYANIDITGGGTAFSEQGFAR
Ga0157380_100935291	3300014326	Switchgrass Rhizosphere	MQLRKYLAAPFAALLLTGASLANAAAPIDVTWNPSGAGITNGGPFTFDNVLINTYANIDITGGGTAFSEQGFARLTVF
Ga0157380_115548231	3300014326	Switchgrass Rhizosphere	MQLRKYFTAPFAALLLTGASLANAATPIDVTWNPTGAGITNAGAFTFDNVLINTYANIDITGGGTAFSEQGFARLTVFSNNGLPTAVPTAGLPGGTPYSLYISF
Ga0157380_119013121	3300014326	Switchgrass Rhizosphere	MKLSKYLAAPFAALLLTGASLANAAAPIDVTWNPSGAGITTGGPFTFDNVLINTYANIDITGGGTAFSEQGFARL
Ga0157379_126531092	3300014968	Switchgrass Rhizosphere	MQLRKYFTAPFAALLLTGASLANAATPIDVTWNPTGAGITNAGAFTFDNVLINTYANIDITGGGTAFSEQGFARLTVFSDNGLPT
Ga0157376_102403513	3300014969	Miscanthus Rhizosphere	MQLRKYLAAPFAALLLTGASLANAAAPIDVTWNPSAVPGLTTSAPFTFDNVLINTYAAIDITGGGTAFSEQGFAVLTVFSNNGLPTSIP
Ga0157376_108880082	3300014969	Miscanthus Rhizosphere	VKGKTMQLKKYLAAPFAALLLTGASLANAAAPIDVTWNPSAVPGLSTAGAFTFDNILLNSYAAIDITGGGTTFS
Ga0173480_104495751	3300015200	Soil	MQLKKYLAAPFAALLLTGASLANAAAPIDVTWNPSAVPGLTTSAPFTFDNVLINTYAAIDITGGGTAFSEQGFAVLTVFSNNGLPTSIPTASFPGGTAYTLYF
Ga0132258_113548101	3300015371	Arabidopsis Rhizosphere	MQLRKYLAASFAALMLTGASLANAAAPIDVTWNPSAAGITTAAPFTFDNVLINTYAAIDITGGGTAFSEQGFARLTVFSNNGLPTSIPTASFPGGTAYSLYI
Ga0190266_111770391	3300017965	Soil	MQLKNKKYFAAVSAALLFTGASLANAAAPIDVTWNPSATPISTQGAFTFDNILINTYATIDITGGGTTFSEQGFARLTVFSNNGLPTSVPTAGFPGGTP
Ga0184624_101068744	3300018073	Groundwater Sediment	MQLRKYLAAPFAALLLTGASLANAAAPIDVTWNPSATPISTAAPFTFDNILINTYAAIDITGGGTAFSEQGF
Ga0184640_103715732	3300018074	Groundwater Sediment	MQLKKYLAAPFAALLLTGASLANAAAPIDVTWNPSAVPGLSTAGAFTFDNILLNSYAAIDITGGGTTFSEQGFVSLAGFSNNNVFTSIPTAGFPGGATPYSLYISFTA
Ga0184647_13161902	3300019263	Groundwater Sediment	MQLRKYLAAPFAALLLTGASLANAAAPIDVTWNPSAAGITTAAPFTFDNILINTYAAIDITGGGTAFSEQGFAQLTVFSNNGL
Ga0184647_14301832	3300019263	Groundwater Sediment	MQLRKYLAAPFAALLLTGASLANAAAPIDVTWNPSAVPGLTTSAPFTFDNVLINTYAAIDITGGGTAFSEQGFAVLTVFSNNGLPTSIPTASFPGGTAYSLYISFTATGTQT
Ga0222624_12733621	3300021951	Groundwater Sediment	MQLRKYLAAPFAALLLTGASLANAAAPIDVRWNPSAVPGLSTAGAFTFDNILLNSYAAIDITGGGTTFSEQGFVSLAGFSNNNVFTSIPTAGFP
Ga0222622_110386951	3300022756	Groundwater Sediment	MQLKNKKYFAAVSVALLLTGASLANAAAPIDVTWNPLGAGISTAGPFTFDNVLINTYSNIDITSGGTAFSEQGFAKLVTFSNNGTGTGSPDFG
Ga0247743_10698571	3300023067	Soil	MQLKKYLAAPFAALLLTGASLANAAAPIDVTWNPSAVPGLSTAGAFTFDNILLNSYAAIDITGGGTTFSEQGFVSLAGFSNNNVFTSIPTAGFPGGATPYSLYISFTATGT
Ga0207673_10642481	3300025290	Corn, Switchgrass And Miscanthus Rhizosphere	MQLRKYLAAPFAALLLTGASLANAAAPIDVTWNPSATPISTAAPFTFDNILINTYAAIDITGGGTAFSEQGFAQLTVFSN
Ga0207643_103284791	3300025908	Miscanthus Rhizosphere	MQLRKYLAAPFAALLLTGASLANAAAPIDVTWNPSAVPGLSTAGAFTFDNILLNSYAAIDITGGGTTFSEQGFVSLA
Ga0207660_110432711	3300025917	Corn Rhizosphere	MQLRKYLAAPFAALLLTGASLANAAAPIDVTWNPSAAGITTAAPFTFDNVLINTYAAIDITGGGTAFSEQGFARLTVFSNNGLPTSIPTASFPGGTVDRGGATIGGRSFPDDSVRRSGRR
Ga0207650_100676793	3300025925	Switchgrass Rhizosphere	MQLRKYLMAPLAALLLTGASLSNAAAPIDVTWNPSAVPGLSTAGAFTFDNILLNSYAAIDITGGGTTFSEQGFVSLAGFSNNNVFTSIPTAGFPGGATPYSLY
Ga0207650_116997741	3300025925	Switchgrass Rhizosphere	MQLKKYLAAPFAALLLTGASLANAAAPIDVTWNPSAVPGLTTSAPFTFDNVLINTYAAIDITGGGTAFSEQGFAVL
Ga0207659_104616342	3300025926	Miscanthus Rhizosphere	MQLRKYLAAPFAALLLTGASLANAAAPIDVTWNPSATPISTAAPFTFDNILINTYAAIDITGGGTAFSEQG
Ga0207644_105603163	3300025931	Switchgrass Rhizosphere	MQLRKYLAAPFAALLLTGASLANAAAPIDVRWNPSAVPGLSTAGAFTFDNILLNSYAAIDITGGGTTFSEQGFVSLAAF
Ga0207711_110138652	3300025941	Switchgrass Rhizosphere	MQLRKYFAAMSAALLFTGASYANAASLLDVTWNPTAIGLSAGGPFTFDNVLINTYGNIDITGGGAAFSEQGFARLTVFSDNGLP
Ga0207679_119181401	3300025945	Corn Rhizosphere	MQLRKYFTAPFAALLLTGASLANAAAPIDVTWNPSGAGITTGGPFTFDNVLINTYANIDITGGGTAFSEQGFARLTVFSDNG
Ga0207639_118548412	3300026041	Corn Rhizosphere	MQLRKYLAAPFAALLLTGASLANAAAPIDVTWNPSAAGITTAAPFTFDNVLINTYAAIDITGGGTAFSEQGFARLTVFSNNGLPTSIPTASFPGGTAYS
Ga0207678_102280972	3300026067	Corn Rhizosphere	MKLSKYLAAPFAALLLTGASLANAAAPIDVTWNPSAVPGLSTAASFTFDNILLNSYAAIDITGGGTAFSEQGFAVLTVFS
Ga0207702_121110641	3300026078	Corn Rhizosphere	MQLRKYLAAPFAALLLTGASLANAAAPIDVTWNPSGAGITNGGPFTFDNVLINTYANIDITGGGTAFSEQGFARLTVFSDNG
Ga0207641_104406971	3300026088	Switchgrass Rhizosphere	MQLRKYLAAPFAALLLTGASLANAAAPIDVTWNPSAAGISTAGAFTFDNILLNSYAAIDITGGGTTFSEQGFVSLAAFSNNNVFTSIPTAGFPG
Ga0207676_100867735	3300026095	Switchgrass Rhizosphere	MQLRKYLAAPFAALLLTGASLANAAAPIDVTWNPSAVPGLSTAGAFTFDNILLNSYAAIDITGGGTTFSEQGFVSLAGFSNNNVFTSIPTAGFPGG
Ga0207676_103679273	3300026095	Switchgrass Rhizosphere	MQLRKYLAAPFAALLLTGASLANAAAPIDVRWNPSAVPGLSTAGAFTFDNILLNSYAAIDITGGGTTFSEQGFVSLAGFSDNNVF
Ga0207674_117044071	3300026116	Corn Rhizosphere	MQLKKYLAAPFAALLLTGASLSNAAAPIDVTWNPSAVPGLSTAGAFTFDNVILNSYAAIDITGGGTAFSEQGFIDLAGFTNNNVFTQIPSAGYPGSATP
Ga0207683_102796341	3300026121	Miscanthus Rhizosphere	MQLRKYLMAPLAALLLTGASLSNAAAPIDVTWNPSAVPGLSTAGAFTFDNILLNSYAAIDITGGGTTFSEQGFVSLAGFSNNNVFTSIPTAGFP
Ga0207683_115210211	3300026121	Miscanthus Rhizosphere	MQLKNKKYFAAVSAALLFTGSSLANAAAPIDVTWNPSATPISTQGAFTFDNILINTYATIDITGGGTTFSEQGFARLTVFSNNGLPTSVPTAGVPGGTPYSLY
Ga0268265_123034681	3300028380	Switchgrass Rhizosphere	MQLRKYLAAPFAALLLTGASLANAAAPIDVTWNPSATPISTAAPFTFDNILINTYAAIDITGGGTAFSEQGFAELTVFSNNGLPTSIPTASF
Ga0268264_106788281	3300028381	Switchgrass Rhizosphere	MQLKKYLAAPFAALLLTGASLANAAAPIDVTWNPSAVPGLTTSAPFTFDNVLINTYAAIDITGGGTAFSEQGFAVLTVFSNNGLPTSIP
Ga0308190_11419621	3300030993	Soil	MQLRKYLAALLLTGASLANAAAPIDVTWNPSATPLSTQGAFTFDNVLINTYANIDSTAGGTAFTEQGFARLTTFSNDGLPTSIPTAGFPGGTPYSLYISFTAAGTSTA
Ga0308195_10907172	3300031123	Soil	MQLRKYFATLSAALLLTGASLANAAAPIDVTWNPSATPLSTQGAFTFDNVLINTYANIDSTAGGTAFTEQGFARLTTFSNDGLPTSI
Ga0170819_180097352	3300031469	Forest Soil	MQLRKYLAAPFAALLLTGASLANAAAPIDVTWNPSAVPGLTTSAPFTFDNILINTYAAIDITGGGTAFSEQGFAVLTVFSNNGLPTSIPTASFPGG
Ga0310907_108157101	3300031847	Soil	MQLRKYLAAPFAALLLTGASLANAAAPIDVTWNPSAAGITTAAPFTFDNVLINTYAAIDITGGGTAFSEQ
Ga0310892_113523731	3300031858	Soil	MQLKKYLAAPFAALLLTGASLANAAAPIDVTWNPSAVPGLSTAGAFTFDNILLNSYAAIDITGGGTTFSEQGFVSLAGFSNNNVFTSIPTAGFPGGATPYSLY
Ga0308173_110212252	3300032074	Soil	MQLRKYFSALSAALLLTGASVAQAALTPIDVTWNPSGAGISTAGAFTFDNVVLNSYITIDNISGTSFTEQGFLRMAVFNGPNN
Ga0310890_113756291	3300032075	Soil	MQLRKYLAAPFAALLLTGASLANAAAPIDVTWNPSGAGITTGGPFTFDNVLINTYANIDITGGGTAFSE
Ga0364929_0164923_1_366	3300034149	Sediment	MSLGPAVEIYCGHITLLVKGKTMQLKKYLAAPFAALLLTGASLANAAAPIDVTWNPSATGITTSAPFTFDNVLINTYAAIDITGGGTAFSEQGFAQLTVFSNNGLPTSIPTASFPGGTAYTL
Ga0364933_077714_605_832	3300034150	Sediment	MQLRKYLAAPFAALLLTGASLANAAAPIDVRWNPSATPISTAAPFTFDNILINTYAAIDITGGGTAFSEQGFAQLT
Ga0364941_079867_502_768	3300034417	Sediment	MQLRKYLAAPFAALLLTGASLANAAAPIDVTWNPSAAGITTAAPFTFDNVLINTYAAIDITGGGTAFSEQGFAQLTVFSNNGLPTSIPT
Ga0314781_126330_3_284	3300034660	Soil	MQLRKYLAAPFAALLLTGASLANAAAPIDVRWNPSAVPGLSTAGAFTFDNILLNSYAAIDITGGGTTFSEQGFVSLAAFSNNNVFTSIPTAGFP
Ga0314783_140937_1_297	3300034662	Soil	MQLRKYLAAPFAALLLTGASLANAAAPIDVRWNPSAVPGLSTAGAFTFDNILLNSYAAIDITGGGTTFSEQGFVSLAGFSDNNVFTQIPTAGFPGGATP
Ga0314788_161510_252_554	3300034666	Soil	MQLRKYLAAPFAALLLTGASLANAAAPIDVRWNPSAVPGLSTAGAFTFDNVILNSYAAIDITGGGTAFSEQGFIDLAGFTNNNVFTQIPTAGYPGSATPYS
Ga0314797_157952_1_267	3300034672	Soil	MQLRKYLAAPFAALLLTGASLANAAAPIDVRWNPSAVPGLSTAGAFTFDNILLNSYAAIDITGGGTTFSEQGFVSLAGFSDNNVFTQIP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F082859

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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