Metagenome / Metatranscriptome Family F082846

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F082846
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	55 residues
Representative Sequence	MTKADEFREYAGEALRWSCQSSTEEEKKALIDLAVTWTQAASLSERKFVGPLRA
Number of Associated Samples	87
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	69.03 %
% of genes near scaffold ends (potentially truncated)	34.51 %
% of genes from short scaffolds (< 2000 bps)	95.58 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.67

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (62.832 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (29.203 % of family members)
Environment Ontology (ENVO)	Unclassified (34.513 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (53.097 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 51.22% β-sheet: 0.00% Coil/Unstructured: 48.78%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.67
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.67
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF00072	Response_reg	7.08
PF14347	DUF4399	2.65
PF12071	DUF3551	2.65
PF01569	PAP2	2.65
PF00664	ABC_membrane	0.88
PF13546	DDE_5	0.88
PF06325	PrmA	0.88
PF07045	DUF1330	0.88
PF01068	DNA_ligase_A_M	0.88
PF12802	MarR_2	0.88
PF00296	Bac_luciferase	0.88
PF13924	Lipocalin_5	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.88
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.88
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.88
COG2264	Ribosomal protein L11 methylase PrmA	Translation, ribosomal structure and biogenesis [J]	0.88
COG2890	Methylase of polypeptide chain release factors	Translation, ribosomal structure and biogenesis [J]	0.88
COG3897	Protein N-terminal and lysine N-methylase, NNT1/EFM7 family	Posttranslational modification, protein turnover, chaperones [O]	0.88
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.83 %
All Organisms	root	All Organisms	37.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.83 %
cellular organisms	root	All Organisms → cellular organisms	37.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.83 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	37.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	30.97 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	4.42 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.83 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	25.66 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	4.42 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.83 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	16.81 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7.08 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	4.42 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	16.81 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4.42 %
Hyphomicrobiales incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis	2.65 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.65 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	0.88 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	16.81 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	4.42 %
Vineibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Vineibacter	2.65 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	0.88 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.88 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	16.81 %
unclassified Granulicella	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella	4.42 %
Vineibacter terrae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Vineibacter → Vineibacter terrae	2.65 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.88 %
unclassified Pseudolabrys	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys	0.88 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	16.81 %
Granulicella sp. dw_53	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. dw_53	4.42 %
Vineibacter terrae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Vineibacter → Vineibacter terrae	2.65 %
Rhodoplanes sp. JGI PP 4-B12	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. JGI PP 4-B12	0.88 %
Pseudolabrys sp. FHR47	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. FHR47	0.88 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002568\|C688J35102_117839276	Not Available	510	Open in IMG/M
3300004081\|Ga0063454_100560026	Not Available	823	Open in IMG/M
3300004479\|Ga0062595_100606371	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	854	Open in IMG/M
3300005093\|Ga0062594_101313247	Not Available	727	Open in IMG/M
3300005161\|Ga0066807_1039315	Not Available	534	Open in IMG/M
3300005337\|Ga0070682_100689414	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	818	Open in IMG/M
3300005338\|Ga0068868_101664605	Not Available	601	Open in IMG/M
3300005339\|Ga0070660_101859980	Not Available	513	Open in IMG/M
3300005341\|Ga0070691_10456404	Not Available	731	Open in IMG/M
3300005344\|Ga0070661_101199175	Not Available	635	Open in IMG/M
3300005455\|Ga0070663_101236327	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	657	Open in IMG/M
3300005544\|Ga0070686_100330737	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1139	Open in IMG/M
3300005548\|Ga0070665_100774345	Not Available	972	Open in IMG/M
3300005548\|Ga0070665_101238862	Not Available	756	Open in IMG/M
3300005548\|Ga0070665_101357875	All Organisms → cellular organisms → Bacteria → Proteobacteria	720	Open in IMG/M
3300005548\|Ga0070665_102415594	Not Available	528	Open in IMG/M
3300005616\|Ga0068852_101641948	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. dw_53	665	Open in IMG/M
3300005840\|Ga0068870_11225476	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	544	Open in IMG/M
3300005842\|Ga0068858_101494210	All Organisms → cellular organisms → Bacteria → Proteobacteria	666	Open in IMG/M
3300006038\|Ga0075365_10160622	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. dw_53	1566	Open in IMG/M
3300006038\|Ga0075365_10161057	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1563	Open in IMG/M
3300006038\|Ga0075365_10179392	Not Available	1480	Open in IMG/M
3300006038\|Ga0075365_10429329	Not Available	933	Open in IMG/M
3300006038\|Ga0075365_10663246	Not Available	737	Open in IMG/M
3300006038\|Ga0075365_11220983	Not Available	529	Open in IMG/M
3300006237\|Ga0097621_100772954	Not Available	888	Open in IMG/M
3300006353\|Ga0075370_10257430	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1035	Open in IMG/M
3300006353\|Ga0075370_10441206	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. dw_53	783	Open in IMG/M
3300006603\|Ga0074064_11212308	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. FHR47	608	Open in IMG/M
3300006606\|Ga0074062_11906690	All Organisms → cellular organisms → Bacteria → Proteobacteria	1130	Open in IMG/M
3300009098\|Ga0105245_11950039	All Organisms → cellular organisms → Bacteria → Proteobacteria	640	Open in IMG/M
3300009176\|Ga0105242_10346387	Not Available	1371	Open in IMG/M
3300009551\|Ga0105238_11735443	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. dw_53	656	Open in IMG/M
3300009553\|Ga0105249_11576319	Not Available	729	Open in IMG/M
3300009553\|Ga0105249_12203736	Not Available	624	Open in IMG/M
3300009840\|Ga0126313_11726466	Not Available	523	Open in IMG/M
3300010371\|Ga0134125_11729342	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	680	Open in IMG/M
3300010403\|Ga0134123_10774928	Not Available	949	Open in IMG/M
3300011119\|Ga0105246_10597855	Not Available	953	Open in IMG/M
3300011119\|Ga0105246_10734026	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	869	Open in IMG/M
3300012212\|Ga0150985_107525588	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. JGI PP 4-B12	888	Open in IMG/M
3300012212\|Ga0150985_108459897	Not Available	1007	Open in IMG/M
3300012212\|Ga0150985_111193561	Not Available	715	Open in IMG/M
3300012469\|Ga0150984_106162059	Not Available	948	Open in IMG/M
3300012469\|Ga0150984_106504391	Not Available	838	Open in IMG/M
3300012939\|Ga0162650_100019817	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	958	Open in IMG/M
3300012951\|Ga0164300_10153221	Not Available	1082	Open in IMG/M
3300012951\|Ga0164300_10488882	Not Available	700	Open in IMG/M
3300012955\|Ga0164298_10495935	Not Available	815	Open in IMG/M
3300012955\|Ga0164298_11481836	Not Available	529	Open in IMG/M
3300012958\|Ga0164299_10947063	Not Available	629	Open in IMG/M
3300012960\|Ga0164301_10330360	All Organisms → cellular organisms → Bacteria	1040	Open in IMG/M
3300012961\|Ga0164302_10966975	Not Available	660	Open in IMG/M
3300012985\|Ga0164308_10174701	Not Available	1613	Open in IMG/M
3300012985\|Ga0164308_11108643	Not Available	709	Open in IMG/M
3300012985\|Ga0164308_11553124	Not Available	609	Open in IMG/M
3300012985\|Ga0164308_12185465	Not Available	515	Open in IMG/M
3300012987\|Ga0164307_10351748	Not Available	1069	Open in IMG/M
3300012989\|Ga0164305_10608953	Not Available	879	Open in IMG/M
3300012989\|Ga0164305_11272088	Not Available	641	Open in IMG/M
3300013297\|Ga0157378_10736529	Not Available	1008	Open in IMG/M
3300013306\|Ga0163162_10543870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1290	Open in IMG/M
3300013306\|Ga0163162_10907691	Not Available	994	Open in IMG/M
3300014969\|Ga0157376_10419330	Not Available	1298	Open in IMG/M
3300015371\|Ga0132258_13142987	Not Available	1141	Open in IMG/M
3300015374\|Ga0132255_103372071	Not Available	680	Open in IMG/M
3300015374\|Ga0132255_103530554	Not Available	665	Open in IMG/M
3300017792\|Ga0163161_10100202	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2155	Open in IMG/M
3300017792\|Ga0163161_10159111	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Vineibacter → Vineibacter terrae	1721	Open in IMG/M
3300017965\|Ga0190266_10484279	Not Available	715	Open in IMG/M
3300018031\|Ga0184634_10469656	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	565	Open in IMG/M
3300018051\|Ga0184620_10072201	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1018	Open in IMG/M
3300018073\|Ga0184624_10028051	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2156	Open in IMG/M
3300018081\|Ga0184625_10022835	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Vineibacter → Vineibacter terrae	3005	Open in IMG/M
3300018476\|Ga0190274_10106465	All Organisms → cellular organisms → Bacteria	2247	Open in IMG/M
3300018476\|Ga0190274_12419452	Not Available	622	Open in IMG/M
3300019263\|Ga0184647_1243684	Not Available	636	Open in IMG/M
3300019356\|Ga0173481_10546852	Not Available	599	Open in IMG/M
3300019767\|Ga0190267_11304155	Not Available	542	Open in IMG/M
3300025919\|Ga0207657_11476952	Not Available	508	Open in IMG/M
3300025926\|Ga0207659_11818360	Not Available	517	Open in IMG/M
3300025927\|Ga0207687_10056178	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Vineibacter → Vineibacter terrae	2760	Open in IMG/M
3300025934\|Ga0207686_10507775	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	936	Open in IMG/M
3300025942\|Ga0207689_11661384	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	530	Open in IMG/M
3300025981\|Ga0207640_11672342	Not Available	574	Open in IMG/M
3300026067\|Ga0207678_11110015	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	700	Open in IMG/M
3300026118\|Ga0207675_101343176	Not Available	735	Open in IMG/M
3300027388\|Ga0208995_1014041	Not Available	1368	Open in IMG/M
3300027669\|Ga0208981_1064506	Not Available	933	Open in IMG/M
3300027866\|Ga0209813_10188213	Not Available	758	Open in IMG/M
3300028379\|Ga0268266_10312959	Not Available	1468	Open in IMG/M
3300028379\|Ga0268266_11121661	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. dw_53	761	Open in IMG/M
3300028379\|Ga0268266_11788742	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	589	Open in IMG/M
3300028708\|Ga0307295_10105226	Not Available	763	Open in IMG/M
3300028710\|Ga0307322_10065167	Not Available	905	Open in IMG/M
3300028754\|Ga0307297_10216751	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	673	Open in IMG/M
3300028755\|Ga0307316_10197766	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	724	Open in IMG/M
3300028768\|Ga0307280_10089388	Not Available	1012	Open in IMG/M
3300028784\|Ga0307282_10414067	Not Available	653	Open in IMG/M
3300028790\|Ga0307283_10042213	All Organisms → cellular organisms → Bacteria → Proteobacteria	1061	Open in IMG/M
3300028793\|Ga0307299_10313568	Not Available	589	Open in IMG/M
3300028810\|Ga0307294_10034537	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1408	Open in IMG/M
3300028875\|Ga0307289_10424741	Not Available	546	Open in IMG/M
3300030829\|Ga0308203_1074928	Not Available	549	Open in IMG/M
3300031058\|Ga0308189_10080900	All Organisms → cellular organisms → Bacteria → Proteobacteria	985	Open in IMG/M
3300031082\|Ga0308192_1075798	Not Available	542	Open in IMG/M
3300031091\|Ga0308201_10097924	Not Available	841	Open in IMG/M
3300031446\|Ga0170820_16520464	Not Available	858	Open in IMG/M
3300031892\|Ga0310893_10268781	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	712	Open in IMG/M
3300031908\|Ga0310900_10894459	Not Available	724	Open in IMG/M
3300031940\|Ga0310901_10350675	Not Available	632	Open in IMG/M
3300032174\|Ga0307470_10976455	Not Available	672	Open in IMG/M
3300034149\|Ga0364929_0144957	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	768	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	53.10%
Host-Associated	Host-Associated	46.90%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	48.67%
Plants	Host-Associated → Plants	46.90%
Aquatic	Environmental → Aquatic	4.42%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	46.90%
Rhizosphere	Host-Associated → Plants → Rhizosphere	23.01%
Rhizoplane	Host-Associated → Plants → Rhizoplane	15.04%
Roots	Host-Associated → Plants → Roots	8.85%
Sediment	Environmental → Aquatic → Sediment	3.54%
Freshwater	Environmental → Aquatic → Freshwater	0.89%
Floodplain	Environmental → Terrestrial → Floodplain	0.89%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	40.71%
Soil	Host-Associated → Plants → Rhizosphere → Soil	13.27%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	9.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.73%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	7.96%
Loam	Environmental → Terrestrial → Soil → Loam	6.19%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	5.31%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.54%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.89%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.89%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.89%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	34.51%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	13.27%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	9.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.73%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	7.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	5.31%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.54%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.65%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.77%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.77%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.77%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.77%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.89%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.89%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.89%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	29.20%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	7.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	6.19%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	5.31%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	4.42%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.54%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.65%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.65%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	2.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.65%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.77%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.77%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.77%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.77%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.77%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.77%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.89%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.89%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.89%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.89%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.89%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.89%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005161	Soil and rhizosphere microbial communities from Laval, Canada - mgLPA	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006353	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5	Host-Associated	Open in IMG/M
3300006603	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006606	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012939	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t1i015	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019263	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027388	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_O2 (SPAdes)	Environmental	Open in IMG/M
3300027669	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027866	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028754	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028790	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_122	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028810	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300030829	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_357 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031082	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_193 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031940	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300034149	Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
C688J35102_1178392761	3300002568	Soil	KADEFREYAGEALRWSCQSSTEEEKKALIDLAVTWTQAASLSERKFVGPLRA*
Ga0063454_1005600261	3300004081	Soil	MTKVEQFREYAEEAMQWSRQSRTKEAKDILIDLAFTWTQAASLSERKSVDPLRP*
Ga0062595_1006063712	3300004479	Soil	MTKADEFREYAEEALRWSCESKTEEEKSLLIDLAINWMQAAEVSKRKSDGQLG*
Ga0062594_1013132472	3300005093	Soil	MTKADEFREYAEEALRWSSQSGTEEEKEALIDLAVTWTQAASLSERKFAGPSRT*
Ga0066807_10393151	3300005161	Soil	MTKADEFREYAGEALRWSCQSSTEEEKKALIDLAVTWTQAASLSERTFVGPLRA*
Ga0070682_1006894141	3300005337	Corn Rhizosphere	VERSMTKADEFREYAGEALRWSCQSSTEEEKKALIDLAVTWTQAASLSERKFAGPSRT*
Ga0068868_1016646051	3300005338	Miscanthus Rhizosphere	MTKADEFREYAEEAMQWSSQTRTEEEKKVLIDLAFTWTQAASLSEKKSVGPLRA*
Ga0070660_1018599801	3300005339	Corn Rhizosphere	SMTKADEFREYAEEALRWSSQSGTEEEKKALIDLAVTWTQAASLSERTFVGPLRA*
Ga0070691_104564042	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MTKADEFREYAGEALRWSCQSSTEEEKKALIDLAVTWTQAASLSERKFVGPLPA*
Ga0070661_1011991751	3300005344	Corn Rhizosphere	VELMTKADEFREYAGEALRWSCQSSTEEEKKALIDLAVTWTQAASLSERTFVGPLRA*
Ga0070663_1012363272	3300005455	Corn Rhizosphere	ADEFREYAEEALRWSCESKTEEEKSLLIDLAINWMQAAEVSERYSDGPLG*
Ga0070686_1003307371	3300005544	Switchgrass Rhizosphere	ERSMTKADEFREYAGEALRWSCQSRTEEEKKALIDLAVTWTPAASLSERTFVGPLRA*
Ga0070665_1007743452	3300005548	Switchgrass Rhizosphere	MTKADEFREYAEEALRWSSQSGTEEEKKALIDLAVTWTQAASLSERKFAGPSRT*
Ga0070665_1012388621	3300005548	Switchgrass Rhizosphere	MTRADEFREYAGEALRWSSQSSTEEEKKALIDLAVTWTQAASLSARKFVGPPRT*
Ga0070665_1013578752	3300005548	Switchgrass Rhizosphere	MTKADQFREYAEEALQWSRQSKTEYARNVLIDLALTWRQAALLSERKSVCLPEQGV*
Ga0070665_1024155942	3300005548	Switchgrass Rhizosphere	LERSMTKADRFREYAEEALRWSRKSRTEDARNVLIDLAFTWRQAALLSERKPVCLPEQRV
Ga0068852_1016419482	3300005616	Corn Rhizosphere	LGLERSMTKADRFREYAEEALRWSRKSRTEDARNVLIDLAFTWRQAALLSERKPVCLPEQRV*
Ga0068870_112254762	3300005840	Miscanthus Rhizosphere	REYAEEALRWSCESKTEEEKSLLIDLAINWMQAAEVSKRKSDGQLG*
Ga0068858_1014942101	3300005842	Switchgrass Rhizosphere	MTKADQFREYAEEALQWSRQSKTEYARNVLIDLALTWRQAALLSERKSVCLLEQGV*
Ga0075365_101606224	3300006038	Populus Endosphere	VELMTKADEFREYAGEALRWSSQSSTEEEKKALIDLAVTWTQAASLSARKFVGPPRT*
Ga0075365_101610575	3300006038	Populus Endosphere	MTKADRFREYAEEALRWSRKSRTEDARNVLIDLAFTWRQAALLSERKPVCLPEQRV*
Ga0075365_101793924	3300006038	Populus Endosphere	MTKADEFREYAEEALRWSSQSSTEVEKKALIGLAVTWTQAASLSERVSAGTPMA*
Ga0075365_104293293	3300006038	Populus Endosphere	MTKADEFREYAEEALRWSSQSSTEEEKKALIGLAVTWTQAASLSERTFFGPLRA*
Ga0075365_106632461	3300006038	Populus Endosphere	MTKADEFRAYAGEALRWSCQSSSEEEKKALIDLAVTLTQAASSSERKFVGPLRA*
Ga0075365_112209831	3300006038	Populus Endosphere	MTKADEFRGYAEEALRWSSQSGTEEEKKALIDLAVTWTQAASLS
Ga0097621_1007729542	3300006237	Miscanthus Rhizosphere	MTKADEFREYAEEAMQWSRQSKTEDARKMLIDLAFTWTQAASLSEMKSLCPPEQRISIEPKLAMYVL*
Ga0075370_102574301	3300006353	Populus Endosphere	RGGAHWMERSMTKADVFREYAEEALRWSSQSSTEEEKKALIDLAVTWTQAASLSERKFAGPSRT*
Ga0075370_104412062	3300006353	Populus Endosphere	RNRSALVMERSMTKADRFREYAEEALRWSRQSRTEDARNVLIDLAFTWRQAALLSERKPVCLPEQRV*
Ga0074064_112123081	3300006603	Soil	MIRANPALSVSKADQFREYAEEAMRWSRQAKTEDAKNTLIDLALTWRQAASLSEMKSVGPLKGLTLA*
Ga0074062_119066902	3300006606	Soil	MTKADEFREHAGEALRWSCRSGTEEEKKALIGLAVTWTQAASLSEMKSVGPPRA*
Ga0105245_119500392	3300009098	Miscanthus Rhizosphere	MTKADEFREHAGEALRWSCQSGTEEEKKALIGLAVTWTQAASLSEMKSVGPPRA*
Ga0105242_103463873	3300009176	Miscanthus Rhizosphere	MTKSDQFREYAEEAMQWSSQTRTEEEKKVLIDLAFTWTQAASLSEKKSVGPLRA*
Ga0105238_117354432	3300009551	Corn Rhizosphere	ERSMTKADQFREYAEEALQWSRQSKTEYARNVLIDLALTWRQAALLSERKSVCLPEQGV*
Ga0105249_115763192	3300009553	Switchgrass Rhizosphere	MTKSDQFREYAEEALQWSRQSSTEEEKKALLDLAFTWTQAASLSEKKSVGPLRA*
Ga0105249_122037362	3300009553	Switchgrass Rhizosphere	MTKADEFREYAGEALRWSCQSSTEEEKKALIDLAVTWTQAASLSERKFAGPSRT*
Ga0126313_117264661	3300009840	Serpentine Soil	MIKADEFREYAGEALRWSCQSSTEEEKKALIDLAVTWTQAASLSERKFVGPLRA*
Ga0134125_117293421	3300010371	Terrestrial Soil	LPWGRSWVERSITKADEFREYAEEALRWSCESKTEEEKSLLIDLAINWMQAAEVSKRKSDGQLG*
Ga0134123_107749283	3300010403	Terrestrial Soil	MTKADEFREYAEEALRWSCESKTEEEKSLLIDLAINWMQAAEVSERYSDGPLG*
Ga0105246_105978554	3300011119	Miscanthus Rhizosphere	MIKADEFREYAGEALQWSCQSSSEEEKKALIDLAVTWTQAASLSERTFVGPLRA*
Ga0105246_107340261	3300011119	Miscanthus Rhizosphere	MTKADRFREYAEEALRWSRQSRTEDARNVLIDLAFTWRQAALLSERKPVCLPEQRV*
Ga0150985_1075255883	3300012212	Avena Fatua Rhizosphere	MTKADEFREYAEEALWWSSQSSTEEEKKALIGLAVTWTQAASLSERKFVGPLPA*
Ga0150985_1084598972	3300012212	Avena Fatua Rhizosphere	MTKSDQFRELAEEALQWSRQSKTEEEKKALLDLAVTWTQAAALSEKSVGALGP*
Ga0150985_1111935611	3300012212	Avena Fatua Rhizosphere	ELMTRADEFREYAGEALRWSSQSSTEEEKKALIDLAVTWTQAASLSERKFAGPSRT*
Ga0150984_1061620593	3300012469	Avena Fatua Rhizosphere	SRVERSMTKADEFREYAEEALRWSSQSGTEEEKKALIDLAVTWTQAASLSERKFAGPSRT
Ga0150984_1065043912	3300012469	Avena Fatua Rhizosphere	MTKADEFREYAEEALWWSSQSSTEEEKKALIGLAVTWTQAASLSERTFFGPLRA*
Ga0162650_1000198171	3300012939	Soil	GVERSMTKADEFREYAGEALRWSCQSSTEEEKKALIDLAVTWTQAVSLSERTFVVPLRA*
Ga0164300_101532213	3300012951	Soil	MTKSDQFREYADEALHWSRQSNTEEEKKALLDLAVTWTQAAALSEKSVGPLRA*
Ga0164300_104888821	3300012951	Soil	MTKAEQFREYAEEAMQWSRQSKTEDARKMLIDLAFTWTQTASLSEMKSLCPP
Ga0164298_104959352	3300012955	Soil	MTKAEQFREYAEEAMQWSRQSRTKEAKDILIDLAFTWTQAASLSERKSVDPLRA*
Ga0164298_114818362	3300012955	Soil	MTKADEFREYAGEALRWSCQSSTEEEKKALIGLAVTWTQAASLSEMKSVGPPRA*
Ga0164299_109470631	3300012958	Soil	MTKADEFREYAGEALRWSCQSSTEEEKKALIDLAVTWTQAASLSERTFFGPLRA*
Ga0164301_103303602	3300012960	Soil	REYAEEAMQWSRQSKTEDARKMLIDLAFTWTQAASLSEMKSLCPPEQRISIEPKLAMYVL
Ga0164302_109669753	3300012961	Soil	MTKADEFREYAGEALRWSSQSGTEEEKKALIDLAVTWTQAAALSEK
Ga0164308_101747011	3300012985	Soil	MTKSDQFREYADEALHWSRQSNTEEEKKALLDLAVTWTQAAALSEKSVDPLRA*
Ga0164308_111086431	3300012985	Soil	MTKAEQFREYAEEAMQWSRQSKTEDARKMLIDLAFTWTQAASLSEMKSLCPPEQRISIEP
Ga0164308_115531242	3300012985	Soil	VERSMTKADEFREYAEEALRWSSQSGTEEEKKALIDLAVTWTQAASLSEKKSVGPLRA*
Ga0164308_121854652	3300012985	Soil	MTKADEFREYAEEALRWSRESKTKEEKKALIDLAINWMQAAEVSERYSDGPLG*
Ga0164307_103517481	3300012987	Soil	MTKSDQFREYADEALQWSRQSNTEEEKKALLDLAFTWTQAASLSEKKSVGPLRA*
Ga0164305_106089531	3300012989	Soil	MTKAEQFREYAEEAMQWSRQSKTEDARKMLIDLAFTWTQAASLSEMTSLCPPEQRISIEPKLAMYVL*
Ga0164305_112720882	3300012989	Soil	MTKSDQFREYAEEALQWSRQSSTEEEKKALLDLAVTWTQAAALSEKSVGPLRA*
Ga0157378_107365292	3300013297	Miscanthus Rhizosphere	MTKADEFREYAEEAMQWSSQTRAEEDKQVLHDLAFTWTQAASLSEKKSVGPLRA*
Ga0163162_105438701	3300013306	Switchgrass Rhizosphere	KADEFREYAEEAMQWSSQTRTEEEKKVLIDLAFTWTQAASLSEKKSVGPLRA*
Ga0163162_109076912	3300013306	Switchgrass Rhizosphere	MTKADEFREYAGEALRWSCQSSTEEEKKALIGLAVTWTQAAALSEKSVGPLRA*
Ga0157376_104193302	3300014969	Miscanthus Rhizosphere	EFREYAEEAMQWSSQTRTEEEKKVLIELALTWTQAASLSEKKSVGPLRA*
Ga0132258_131429871	3300015371	Arabidopsis Rhizosphere	MTKADEFREYAGEALRWSSQSSTQEEKKALIDLAVTWTQAASSSERKFAGPPRI*
Ga0132255_1033720712	3300015374	Arabidopsis Rhizosphere	TKSDQFREYADEALHWTRQSNTEEEKKALLDLAVTWTQAAALSERSVGPLRA*
Ga0132255_1035305541	3300015374	Arabidopsis Rhizosphere	MTKADEFREYAGEALRWSSQSSTEEEKKALIDLAVTWTQAASLSERKFAGPSRT*
Ga0163161_101002024	3300017792	Switchgrass Rhizosphere	MTKADEFREYAEEAMQWSSQTRTEEEKKVLIDLAFTWTQAASLSEKKSVGPLRA
Ga0163161_101591112	3300017792	Switchgrass Rhizosphere	MTKADEFREYAEEALRWSSQSSTEEEKKALIDLAVTWTQAASLSERTFVGPLRA
Ga0190266_104842793	3300017965	Soil	MTKADEFREYAEEALWWSSQSSTEEEKKVLIELAFTWTQAASLSERKSVGPLKGLTPA
Ga0184634_104696562	3300018031	Groundwater Sediment	MSKADQFREYAERATRWSRQAKSEDAKNTLIDLALTWRQAASLS
Ga0184620_100722012	3300018051	Groundwater Sediment	MTKADEFREYAEEALWWSSQSSTEEEKKALIGLAVTWTQAASLSERKFVGPLPA
Ga0184624_100280512	3300018073	Groundwater Sediment	MTKADEFREYAEEALQWSRHSTTKEEKKALLDLAVTWTQAAALSEKSVGPLSA
Ga0184625_100228351	3300018081	Groundwater Sediment	MTKADEFREYAGEALWWSSQSSTEEEKKALIGLAVTWTQAASLSERTFVGPLRA
Ga0190274_101064654	3300018476	Soil	MTKADEFREYAGEALRWSCQSRTEEEKKALIDLAVTWTQAASLSERTFVGPLRA
Ga0190274_124194521	3300018476	Soil	MTKADQFRECAEEAMRWSRQSRTEEENTVLIDLAFTWTRAASLSERKSVLGRPEQRI
Ga0184647_12436841	3300019263	Groundwater Sediment	QTRSASMSKADQFREYAEEAMRWSRQAKTEDAKNTLIDLALTWRQAASLSEMKSVGPLKGLTLA
Ga0173481_105468521	3300019356	Soil	MTKADEFREYAEEALRWSHESKTEEEKKALIDLAVTWTQAASLSARKFVGPPRT
Ga0190267_113041551	3300019767	Soil	MTKADEFREYAGEALRRSCQSSTEEEKKALFDLAVTWTQAASLSERKFVGPLRA
Ga0207657_114769521	3300025919	Corn Rhizosphere	MTKADEFREYAGEALRWSCQSSTEEEKKALIDLAVTWTQAASLSERTFVGPLRA
Ga0207659_118183601	3300025926	Miscanthus Rhizosphere	KADEFREYAGEALRWSSQSSTEEEKKALIDLAVTWTQAASLSARKFVGPPRT
Ga0207687_100561781	3300025927	Miscanthus Rhizosphere	MTKADEFREHAGEALRWSCQSGTEEEKKALIGLAVTWTQAASLSEMKSVGPPRA
Ga0207686_105077751	3300025934	Miscanthus Rhizosphere	RGGAQGVERSMTKADEFREYAGEALRWSCQSSTEEEKKALIDLAVTWTQAASLSERTFVGPLRA
Ga0207689_116613843	3300025942	Miscanthus Rhizosphere	MTKADEFREYAGEALRWSSQSSTEEEKKALIDLAVTWTQAASLSERTFVGPLRA
Ga0207640_116723421	3300025981	Corn Rhizosphere	MTKADEFREYAEEALRWSSQSGTEEEKEALIDLAVTWTQAASLSERKFAGPSRT
Ga0207678_111100151	3300026067	Corn Rhizosphere	ADEFREYAEEALRWSCESKTEEEKSLLIDLAINWMQAAEVSERYSDGPLG
Ga0207675_1013431762	3300026118	Switchgrass Rhizosphere	MTKADEFREYAEEALWWSSQSSTEEEKKALIGLAVTWTQAASLSERTFFGPLRA
Ga0208995_10140411	3300027388	Forest Soil	MSKAEFREYAEEAMRWSRQSKTEEARNILIDLALTWTQAAACSERTIVRPPEQRV
Ga0208981_10645062	3300027669	Forest Soil	MSKAEFREYAEEAMRWSRQSKTEEARNILIDLALTWTQAAACTERTIVRPPEQRV
Ga0209813_101882131	3300027866	Populus Endosphere	LQLGGRSRVELMTKADEFREYAGEALRWSSQSSTEEEKKALIDLAVTWTQAASLSARKFVGPPRT
Ga0268266_103129592	3300028379	Switchgrass Rhizosphere	MTKADEFREYAEEALRWSSQSGTEEEKKALIDLAVTWTQAASLSERKFAGPSRT
Ga0268266_111216611	3300028379	Switchgrass Rhizosphere	MTKADRFREYAEEALRWSRKSRTEDARNVLIDLAFTWRQAALLSERKPVCLPEQRV
Ga0268266_117887421	3300028379	Switchgrass Rhizosphere	MTKADQFREYAEEALQWSRQSKTEYARNVLIDLALTWRQAALLSERKSVCLPEQGV
Ga0307295_101052262	3300028708	Soil	VVERSMIKADEFREYAGEALRWSCQSSTEEEKKALIGLAVTWTQAASLSERKFVGPLRA
Ga0307322_100651672	3300028710	Soil	VVERSMIKADEFREYAGEALRWSCQSSTEEEKKALIDLAVTWTQAASLSERTFVGPLRA
Ga0307297_102167512	3300028754	Soil	ERSMIKADEFREYAGEALRWSCQSSTEEEKKALIDLAVTWTQAASLSERKFVGPLRA
Ga0307316_101977662	3300028755	Soil	MSKADQFREYAEEAMQWSRQSKTEDARKVLIDLAFTWTQAASLSERKSVGPLKGLTPA
Ga0307280_100893881	3300028768	Soil	FREYAEEALWWSSQSSTSSTEEEKKALIGLAVTWTQAASLSERKFVGPLRA
Ga0307282_104140672	3300028784	Soil	MTKADEFREYAEEALWWSSQSSTSSTEEEKKALIGLAVTWTQAASLSEM
Ga0307283_100422131	3300028790	Soil	MTKADEFREHAGEALRWSCRSGTEEEKKALIGLAVTWTQAASLSEMKSVGPPRA
Ga0307299_103135681	3300028793	Soil	VVERSMIKADEFREYAGEALRWSCQSSTEEEKKALIDLAVTWTQAASLSERKFVGPLPA
Ga0307294_100345373	3300028810	Soil	MIKADEFREYAGEALRWSCQSSTEEEKKALIGLAVTWTQAASLSERKFVGPLRA
Ga0307289_104247411	3300028875	Soil	MSKADQFREYAERATRWSRQAKSEDAKNTLIDLALTWRQAASLSERTVVSPPEQRV
Ga0308203_10749282	3300030829	Soil	MSKADQFREYAEEAMRWSRQAKTEDAKNTLIDLALTWGQAASLSERTVVSPPEQRV
Ga0308189_100809002	3300031058	Soil	MTKADEFREYAGEALRWSCQSSTEEEKKALIDLAVTWTQAASLSERKFVGPLRA
Ga0308192_10757982	3300031082	Soil	MTKADEFREYAEEALWWSSQSSTEEEKKALIDLAVTWTQAASLSERKFVGPLRA
Ga0308201_100979242	3300031091	Soil	MTKADEFREYAGEALWWSSQSSTEEEKKALIGLAVTWTQAASLSERKFVGPLPA
Ga0170820_165204643	3300031446	Forest Soil	GRILSTGAVREYAEEVMRWSSQSSTEEEKKALIGLAVTWTQAASLSERKFVGPLPA
Ga0310893_102687812	3300031892	Soil	SMTKADEFREYAGEALRWSCQSSTEEEKKALIDLAVTWTQAASLSERTFVGPLRA
Ga0310900_108944592	3300031908	Soil	MTKAEQFREYAEEAMQWSRQSKTEDARKMLIDLAFTWTQAASLSEMKSLCPPEQRISIEPKLAMYVL
Ga0310901_103506751	3300031940	Soil	EQFREYAEEAMQWSRQSKTEDARKMLIDLAFTWTQTASLSEMKSLCPPEQRISIEPKLAMYVL
Ga0307470_109764552	3300032174	Hardwood Forest Soil	MTKADGFREYAGEALRWSCQSSTEEEKKALIDLAVTWTQAASLSERTFVGPLRA
Ga0364929_0144957_511_675	3300034149	Sediment	MTKADEFREYAEEALWWSSQSSTEEEKKALIGLAVTWTQAASLSERTFVGPLRA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F082846

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences