Metagenome / Metatranscriptome Family F082840

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F082840
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	100 residues
Representative Sequence	MQGDTAARESNSPAVGLFQKAHGKMVMLQRLDAQLGSLLEQRRKIQDELSSVQAQINDEFDRVMRQAEETPARILSEIAEGGHGGGARPVAGRLAEPEAANA
Number of Associated Samples	91
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	89.38 %
% of genes near scaffold ends (potentially truncated)	26.55 %
% of genes from short scaffolds (< 2000 bps)	97.35 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (99.115 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere (11.504 % of family members)
Environment Ontology (ENVO)	Unclassified (42.478 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (61.947 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 58.46% β-sheet: 0.00% Coil/Unstructured: 41.54%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF01925	TauE	4.42
PF07705	CARDB	1.77
PF13600	DUF4140	0.88
PF00916	Sulfate_transp	0.88
PF13792	Obsolete Pfam Family	0.88
PF00353	HemolysinCabind	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	Inorganic ion transport and metabolism [P]	4.42
COG0659	Sulfate permease or related transporter, MFS superfamily	Inorganic ion transport and metabolism [P]	0.88
COG2233	Xanthine/uracil permease	Nucleotide transport and metabolism [F]	0.88
COG2252	Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 ( NCS2) family	Nucleotide transport and metabolism [F]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.12 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.12 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.12 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	86.73 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	6.19 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.88 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	86.73 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3.54 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.88 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.88 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.88 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
Phycisphaerae	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae	86.73 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.54 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	0.88 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.88 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.88 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
unclassified Phycisphaerae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae	86.73 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.54 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.88 %
Burkholderiales genera incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis	0.88 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	0.88 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	86.73 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.54 %
Leptothrix	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Leptothrix	0.88 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.88 %
Clostridiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae	0.88 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	86.73 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	3.54 %
Myxococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae	0.88 %
Clostridium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium	0.88 %
Leptothrix cholodnii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Leptothrix → Leptothrix cholodnii	0.88 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	86.73 %
Bradyrhizobium sp. th.b2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. th.b2	3.54 %
unclassified Clostridium	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium	0.88 %
unclassified Myxococcaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae	0.88 %
Leptothrix cholodnii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Leptothrix → Leptothrix cholodnii	0.88 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	86.73 %
Bradyrhizobium sp. th.b2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. th.b2	3.54 %
Myxococcaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	0.88 %
Clostridium sp. KNHs216	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium → Clostridium sp. KNHs216	0.88 %
Leptothrix cholodnii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Leptothrix → Leptothrix cholodnii	0.88 %
Unclassified	root	N/A	0.88 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000363\|ICChiseqgaiiFebDRAFT_13507769	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	504	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100735451	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	1360	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100735753	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	3686	Open in IMG/M
3300000789\|JGI1027J11758_12681309	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	742	Open in IMG/M
3300000956\|JGI10216J12902_101266764	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Leptothrix → Leptothrix cholodnii	653	Open in IMG/M
3300004081\|Ga0063454_100449599	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	884	Open in IMG/M
3300004114\|Ga0062593_101459587	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	734	Open in IMG/M
3300004114\|Ga0062593_103289879	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	518	Open in IMG/M
3300004157\|Ga0062590_102152647	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	583	Open in IMG/M
3300004643\|Ga0062591_102380903	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	554	Open in IMG/M
3300005328\|Ga0070676_11392097	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	538	Open in IMG/M
3300005336\|Ga0070680_100865643	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	779	Open in IMG/M
3300005340\|Ga0070689_101060797	All Organisms → cellular organisms → Bacteria → Proteobacteria	723	Open in IMG/M
3300005340\|Ga0070689_101536103	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	603	Open in IMG/M
3300005353\|Ga0070669_101131206	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	675	Open in IMG/M
3300005364\|Ga0070673_100775852	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	884	Open in IMG/M
3300005365\|Ga0070688_101567456	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	537	Open in IMG/M
3300005367\|Ga0070667_100619753	All Organisms → cellular organisms → Bacteria	998	Open in IMG/M
3300005367\|Ga0070667_100835086	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	856	Open in IMG/M
3300005441\|Ga0070700_101080677	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	664	Open in IMG/M
3300005445\|Ga0070708_100607306	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	1031	Open in IMG/M
3300005456\|Ga0070678_102133463	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. th.b2	531	Open in IMG/M
3300005458\|Ga0070681_11936740	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. th.b2	517	Open in IMG/M
3300005459\|Ga0068867_102008044	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	547	Open in IMG/M
3300005466\|Ga0070685_10465827	All Organisms → cellular organisms → Bacteria	888	Open in IMG/M
3300005543\|Ga0070672_100783745	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. th.b2	838	Open in IMG/M
3300005548\|Ga0070665_102097696	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium → Clostridium sp. KNHs216	570	Open in IMG/M
3300005598\|Ga0066706_11412225	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. th.b2	525	Open in IMG/M
3300005840\|Ga0068870_11360591	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	519	Open in IMG/M
3300005843\|Ga0068860_100672280	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	1044	Open in IMG/M
3300006046\|Ga0066652_100939188	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	824	Open in IMG/M
3300006237\|Ga0097621_101354954	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	673	Open in IMG/M
3300006237\|Ga0097621_102125316	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	537	Open in IMG/M
3300006854\|Ga0075425_101185889	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	868	Open in IMG/M
3300006918\|Ga0079216_10857304	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	677	Open in IMG/M
3300009012\|Ga0066710_100450070	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	1930	Open in IMG/M
3300009012\|Ga0066710_100750121	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	1492	Open in IMG/M
3300009094\|Ga0111539_11781076	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	714	Open in IMG/M
3300009098\|Ga0105245_11055380	All Organisms → cellular organisms → Bacteria	858	Open in IMG/M
3300009100\|Ga0075418_12703369	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	542	Open in IMG/M
3300009137\|Ga0066709_100167226	All Organisms → cellular organisms → Bacteria	2840	Open in IMG/M
3300009137\|Ga0066709_100591652	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	1579	Open in IMG/M
3300009137\|Ga0066709_101545192	All Organisms → cellular organisms → Bacteria	954	Open in IMG/M
3300009148\|Ga0105243_11680425	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	663	Open in IMG/M
3300009156\|Ga0111538_10277204	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	2122	Open in IMG/M
3300009177\|Ga0105248_11539321	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	753	Open in IMG/M
3300009177\|Ga0105248_11832842	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	688	Open in IMG/M
3300009551\|Ga0105238_11000212	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	857	Open in IMG/M
3300009873\|Ga0131077_11086863	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	676	Open in IMG/M
3300010036\|Ga0126305_10800369	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	641	Open in IMG/M
3300010041\|Ga0126312_11304268	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	537	Open in IMG/M
3300010042\|Ga0126314_10833013	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	680	Open in IMG/M
3300010044\|Ga0126310_10936778	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	677	Open in IMG/M
3300010045\|Ga0126311_11011845	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	680	Open in IMG/M
3300010045\|Ga0126311_11269693	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	611	Open in IMG/M
3300010128\|Ga0127486_1053033	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	504	Open in IMG/M
3300010166\|Ga0126306_11793373	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	514	Open in IMG/M
3300010335\|Ga0134063_10582885	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	568	Open in IMG/M
3300010396\|Ga0134126_10383187	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	1635	Open in IMG/M
3300010400\|Ga0134122_12844169	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	537	Open in IMG/M
3300012212\|Ga0150985_100488515	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	505	Open in IMG/M
3300012212\|Ga0150985_105419780	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	513	Open in IMG/M
3300012212\|Ga0150985_105828903	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	741	Open in IMG/M
3300012212\|Ga0150985_105838870	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	570	Open in IMG/M
3300012212\|Ga0150985_115147411	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	545	Open in IMG/M
3300012212\|Ga0150985_118546726	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	619	Open in IMG/M
3300012212\|Ga0150985_119991156	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	559	Open in IMG/M
3300012212\|Ga0150985_120500187	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	529	Open in IMG/M
3300012354\|Ga0137366_10569881	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	814	Open in IMG/M
3300012469\|Ga0150984_104300552	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	508	Open in IMG/M
3300012469\|Ga0150984_107840761	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	566	Open in IMG/M
3300012469\|Ga0150984_116304774	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	580	Open in IMG/M
3300012912\|Ga0157306_10331697	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	570	Open in IMG/M
3300012955\|Ga0164298_11289904	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	559	Open in IMG/M
3300013102\|Ga0157371_11118691	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	604	Open in IMG/M
3300013105\|Ga0157369_11408668	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	710	Open in IMG/M
3300013297\|Ga0157378_10422380	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	1318	Open in IMG/M
3300013307\|Ga0157372_11487432	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	780	Open in IMG/M
3300013308\|Ga0157375_12179712	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	660	Open in IMG/M
3300013308\|Ga0157375_12915384	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	571	Open in IMG/M
3300013308\|Ga0157375_13778323	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	503	Open in IMG/M
3300014326\|Ga0157380_13522664	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	501	Open in IMG/M
3300014502\|Ga0182021_12599452	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	609	Open in IMG/M
3300014968\|Ga0157379_11926284	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	583	Open in IMG/M
3300014969\|Ga0157376_13081000	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	505	Open in IMG/M
3300015373\|Ga0132257_103041409	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	611	Open in IMG/M
3300018073\|Ga0184624_10375143	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	635	Open in IMG/M
3300018465\|Ga0190269_11571711	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	546	Open in IMG/M
3300018476\|Ga0190274_12875374	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	577	Open in IMG/M
3300018482\|Ga0066669_11493915	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	614	Open in IMG/M
3300020070\|Ga0206356_11125812	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	567	Open in IMG/M
3300024056\|Ga0124853_1432217	All Organisms → cellular organisms → Bacteria	1871	Open in IMG/M
3300025918\|Ga0207662_10956300	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	607	Open in IMG/M
3300025923\|Ga0207681_11361337	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	596	Open in IMG/M
3300025925\|Ga0207650_10365222	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	1190	Open in IMG/M
3300025926\|Ga0207659_11463118	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	585	Open in IMG/M
3300025927\|Ga0207687_11386587	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	604	Open in IMG/M
3300025931\|Ga0207644_11164999	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	648	Open in IMG/M
3300025936\|Ga0207670_11387956	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	596	Open in IMG/M
3300025960\|Ga0207651_11112438	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	708	Open in IMG/M
3300025960\|Ga0207651_11937807	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	530	Open in IMG/M
3300025972\|Ga0207668_11363174	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	639	Open in IMG/M
3300025986\|Ga0207658_11884220	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	545	Open in IMG/M
3300026075\|Ga0207708_11516468	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	589	Open in IMG/M
3300028379\|Ga0268266_12067031	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	543	Open in IMG/M
3300028381\|Ga0268264_11166975	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	779	Open in IMG/M
3300030988\|Ga0308183_1219157	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	503	Open in IMG/M
3300031093\|Ga0308197_10448986	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	517	Open in IMG/M
3300031231\|Ga0170824_124212138	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	591	Open in IMG/M
3300031938\|Ga0308175_100324047	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	1581	Open in IMG/M
3300031995\|Ga0307409_100745124	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	983	Open in IMG/M
3300032074\|Ga0308173_11669099	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	600	Open in IMG/M
3300032782\|Ga0335082_10382352	Not Available	1273	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	49.56%
Host-Associated	Host-Associated	49.56%
Engineered	Engineered	0.89%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	49.56%
Terrestrial	Environmental → Terrestrial	47.79%
Aquatic	Environmental → Aquatic	1.77%
Wastewater	Engineered → Wastewater	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	47.79%
Rhizosphere	Host-Associated → Plants → Rhizosphere	35.40%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.39%
Roots	Host-Associated → Plants → Roots	1.77%
Freshwater	Environmental → Aquatic → Freshwater	0.89%
Sediment	Environmental → Aquatic → Sediment	0.89%
Activated Sludge	Engineered → Wastewater → Activated Sludge	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	35.40%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	18.58%
Soil	Host-Associated → Plants → Rhizosphere → Soil	16.81%
Loam	Environmental → Terrestrial → Soil → Loam	10.62%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	7.96%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.54%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.77%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.77%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.89%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.89%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	18.58%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	16.81%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	11.50%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.73%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	7.96%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.42%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.54%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.77%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.77%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.89%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.89%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.89%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.89%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	11.50%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	7.08%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	6.19%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.19%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.31%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	5.31%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	5.31%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.54%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.54%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.65%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.65%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	2.65%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.77%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.77%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.77%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.77%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.77%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.89%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.89%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.89%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.89%
Wastewater	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater	0.89%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009873	Activated sludge microbial diversity in wastewater treatment plant from Taiwan - Wenshan plant	Engineered	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010128	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012912	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014502	Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024056	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300030988	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_157 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiFebDRAFT_135077691	3300000363	Soil	MQGDTAVRESNSPAVGLFQKAHGKMVMLQRLDAQLGSLLEQRRKIQDELSSVQAQINDEFDRVMRQAEETPARILSEIAEGTATSR
INPhiseqgaiiFebDRAFT_1007354511	3300000364	Soil	MTTEATSPAVALFQRVHGKMVMLQRLDAQLASLLEQRRKIQDELSSVQASINDEFDRVMRAAEETPARILSEIAEGAHGGARPVAGRLAEQTEAASA*
INPhiseqgaiiFebDRAFT_1007357532	3300000364	Soil	MQGENTGRESNSPAVGLFQKAHGKMVMLQRLDAQLASLLEQRRKIQDELSSVQASINDEFDRVMRAAEETPARILSEIAEGAHGGARPVAGRLAEQTEAASA*
JGI1027J11758_126813092	3300000789	Soil	MQGENTGRESNSPAVGLFQKAHGKMVMLQRLDAQLASLLEQRRKIQDELSSVXASINDEFDRVMRAAEETPARILSEIAEGAHGGARPVAGRLAEQTEAASA*
JGI10216J12902_1012667641	3300000956	Soil	MQGDTAVREANSPAVGLFQKAHGKMVMLQRLDAQLSSLLEQRRKIQDELSAVQSQINDEFDRVMRQAEETPARILTEIADSARNGSRPV
Ga0063454_1004495993	3300004081	Soil	MQGDTAARESNSPAVGLFQKAHGKMVMLQRLDAQLGSLLEQRRKIQDELSSVQAQINDEFDRVMRQAEETPARILSEIAEGGHGGGARPVAGRLAEPEAANA*
Ga0062593_1014595871	3300004114	Soil	MQGDTAARESNSPAVGLFQKAHGKMVMLQRLDAQLGSLLEQRRKIQDELSSVQAQINDEFDRVMRQAEETPARILSEIAEGTATSR
Ga0062593_1032898791	3300004114	Soil	MQGDTAVREANSPAVGLFQKAHGKMVMLQRLDAQLSSLLEQRRKIQDELSSVQNQINDEFDRVMRQAEETPARILTEIAESSRNGAPARPASRLPQPAD
Ga0062590_1021526472	3300004157	Soil	MQGDTAVREANSPAVGLFQKAHGKMVMLQRLDAQLGSLLEQRRKIQDELSSVQNQINDEFDRVMRQAEETPARILTEIADSARNGSRPVAGRLAEPEAANA*
Ga0062591_1023809031	3300004643	Soil	MQGDTAGREGNSPAVGLFQKAHGKMVMLQRLDAQLGSLLEQRRKIQDELSSVQSQINDEFDRVMRQAEETPARILSEIAETGRHDTRVAGRLAEPEAANA*
Ga0070676_113920971	3300005328	Miscanthus Rhizosphere	MQGDTAARESNSPAVGLFQKAHGKMVMLQRLDAQLGSLLEQRRKIQDELSSVQNQINDEFDRVMRQAEETPARILTEIAESSRNGAPARPASRLPQPADAE*
Ga0070680_1008656432	3300005336	Corn Rhizosphere	MQGESATQGSSPAVGLFQKAHGKMVMLQRLDAQLASLLEQRRKIQDELSSVQAQINDEFDRVMRQAEETPARILTEIADTSRNSRPIAGRLAEPEPASA*
Ga0070689_1010607972	3300005340	Switchgrass Rhizosphere	MQGDTAARESNSPAVGLFQKAHGKMVMLQRLDAQLGSLLEQRRKIQDELSSVQAQINDEFDRVMRQAEETPARILSEIAEGGSGGARPV
Ga0070689_1015361031	3300005340	Switchgrass Rhizosphere	MQGETTARESNSPAVGLFQKAHGKMVMLQRLDAQLASLLEQHRKIQDELSSVQSQINDEFDRVMRQAEETPARILTEIAESVHNGGARPVGRLAEPETANA*
Ga0070669_1011312061	3300005353	Switchgrass Rhizosphere	MQGETTARESNSPAVGLFQKAHGKMVMLQRLDAQLASLLEQRRKIQDELSSVQSQINDEFDRVMRQAEETPARILTEIAESVRNGGARPVGRLAEPETANA*
Ga0070673_1007758521	3300005364	Switchgrass Rhizosphere	MQGDTAARESNSPAVGLFQKAHGKMVMLQRLDAQLASLLEQRRKIQDELSSVQSQINDEFDRVMRQAEETPARILSEIAESANTRPVGRLAEPETANA*
Ga0070688_1015674561	3300005365	Switchgrass Rhizosphere	MQGETTARESNSPAVGLFQKAHGKMVMLQRLDAQLASLLEQRRKIQDELSSVQSQINDEFDRVMRQAEETPARILTEIAESVRNGGARPVGRLAEPETAN
Ga0070667_1006197533	3300005367	Switchgrass Rhizosphere	MQGDTAARESNSPAVGLFQKAHGKMVMLQRLDAQLGSLLEQRRKIQDELSSVQAQINDEFDRVMRQAEETPARILSEIAEGGS
Ga0070667_1008350862	3300005367	Switchgrass Rhizosphere	MQGDTTARESNSPAVGLFQKAHGKMVMLQRLDAQLSSLLEQRRKIQDELSSVQSQINDEFDRVMRQAEETPARILSEIAESANTRPVGRLAEPETANA*
Ga0070700_1010806771	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MQGDTAVREANSPAVGLFQKAHGKMVMLQRLDAQLASLLEQRRKIQDELSSVQNQINDEFDRVMRQAEETPARILTEIAESSRNGAPARPASRLPQPADAE*
Ga0070708_1006073062	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MQGDTTARESNSPAVGLFQKAHGKMVMLQRLDAQLSSLLEQRRKIQDELSSVQAQINDEFDRVMRQAEETPARILSEIAESAHSGRPVGRLAEPETANA*
Ga0070678_1021334631	3300005456	Miscanthus Rhizosphere	LFQKAHGKMVMLQRLDAQLGSLLEQRRKIQDELSSVQAQINDEFDRVMRQAEETPARILSEIAEGGASGARPVAGRLAEPEHANA*
Ga0070681_119367401	3300005458	Corn Rhizosphere	MQGDTAARESNSPAVGLFQKAHGKMVMLQRLDAQLGSLLEQRRKIQDELSSVQAQINDEFDRVMRQAEETPARILSEIAEGTATSRPVAGRLAEPEHAGA*
Ga0068867_1020080442	3300005459	Miscanthus Rhizosphere	MQGDTAARESNSPAVGLFQKAHGKMVMLQRLDAQLGSLLEQRRKIQDELSSVQAQINDEFDRVMRQAEETPARILSEIAEGGSGGARPVAGRLAEPEH
Ga0070685_104658272	3300005466	Switchgrass Rhizosphere	MQGDTAARESNSPAVGLFQKAHGKMVMLQRLDAQLGSLLEQRRKIQDELSSVQAQINDEFDRVMRQAEETPARILSEIAEGGSGGARPVAGRLAEPEHAGA*
Ga0070672_1007837451	3300005543	Miscanthus Rhizosphere	MQGDTTARESNSPAVGLFQKAHGKMVMLQRLDAQLGSLLEQRRKIQDELSSVQAQINDEFDRVMRQAEETPARILSEIAEGGSGGARPVAGRLAEPEHAGA*
Ga0070665_1020976961	3300005548	Switchgrass Rhizosphere	MQGDTTARETSSPAVGLFQKAHGKMVMLQRLDSELASLLEQRRKIQDELSAVQSQINDEFDRVMRQAEETPARILTEIADTARNGTRPVAGRLAEPEAANA*
Ga0066706_114122251	3300005598	Soil	MQGDTAARESNSPAVGLFQKAHGKMVMLQRLDAQLGSLLEQRRKIQDELSSVQAQINDEFDRVMRQAEETPARILSEIAEGGHGGTGARPVAGRLAEPEHAGA*
Ga0068870_113605911	3300005840	Miscanthus Rhizosphere	MQGDTAGASNSPAVGLFQKAHGKMVMLQRLDAQLSSLLEQRRKIQDELSAVQNQINDEFDRVMRQAEETPARILTEIAESSRNGAPARPASRLPQPADAE*
Ga0068860_1006722801	3300005843	Switchgrass Rhizosphere	MQGDTATQGASPAVGLFQKAHGKMVMLQRLDAQLASLLEQRRKIQDELSAVQSHINDEFDRVMRAAEETPARILTEIAESSRNGAPARSAGRLPEPEGAEA*
Ga0066652_1009391882	3300006046	Soil	MQGDTAARESNSPAVGLFQKAHGKMVMLQRLDAQLGTLLEQRRKIQDELSSVQAQINDEFDRVMRQAEETPARILSEIAEGGHGGGGARPVAGRLAEPEHAGA*
Ga0097621_1013549541	3300006237	Miscanthus Rhizosphere	MQGDTAARESNSPAVGLFQKAHGKMVMLQRLDAQLGSLLEQRRKIQDELSSVQAQINDEFDRVMRQAEETPARILSEIAEGGSGGARPVAGRLAEPEHANA*
Ga0097621_1021253161	3300006237	Miscanthus Rhizosphere	RHTRFFKEFQMQGDTATQGASPAVGLFQKAHGKMVMLQRLDAQLASLLEQRRKIQDELSSVQASINDEFDRVMRAAEETPARILSEIAEGASGNSRPVAGRLAEQTEAASA*
Ga0075425_1011858892	3300006854	Populus Rhizosphere	MQGDTGSANNSPAVGLFQKAHGKMVMLQRLDAQLASLLEQRRKIQEELTSTQSQINDEFDRVMRQAEEAPARILSEIAESSRGGAPARPANRLAEHTEAANA*
Ga0079216_108573042	3300006918	Agricultural Soil	MQGDTAGREGNSPAVGLFQKAHGKMVMLQRLDAQLASLLEQRRKIQDELSSVQSQINDEFDRVMRQAEETPARILSEIAETGRHHDTRPVGRLAEPEPANA*
Ga0066710_1004500702	3300009012	Grasslands Soil	MQGDTAARESNSPAVGLFQKAHGKMVMLQRLDAQLGSLLEQRRKIQDELSAVQSQINDEFDRVMRQAEETPARILSEIAESTHSGARPVAGRLAEPEAANA
Ga0066710_1007501213	3300009012	Grasslands Soil	MQGETTAREANSPAVGLFQKAHGKMVMLQRLDAQLASLLEQRRKIQDELSSVQSQINDEFDRVMRQAEETPARILSEIAESAHNNSRPVAGRLAEPEAANA
Ga0111539_117810762	3300009094	Populus Rhizosphere	MQGDTAARESNSPAVGLFQKAHGKMVMLQRLDAQLGSLLEQRRKIQDELSGIQSQINDEFDRVMRQAEETPARILSEIAEGGHGGARPVAGRLAEPEHAGA*
Ga0105245_110553802	3300009098	Miscanthus Rhizosphere	MQGDTAVREGNSPAVGLFQKAHGKMVMLQRLDAQLASLLEQRRKIQDELSSVQGQINDEFDRVMRQAEETPARILSEIAEGGSGGARPVAGRLAEPEHAGA*
Ga0075418_127033691	3300009100	Populus Rhizosphere	MQGDTAARESNSPAVGLFQKAHGKMVMLQRLDAQLGSLLEQRRKIQDELSAVQAQINDEFDRVMRQAEETPARILSEIAEGTAGGGARPVAGRLAEPEHAGA*
Ga0066709_1001672264	3300009137	Grasslands Soil	MQGDTAARESNSPAVGLFQKAHGKMVMLQRLDAQLGSLLEQRRKIQDELSAVQSQINDEFDRVMRQAEETPARILSEIAESTHSGARPVAGRLAEPEAANA*
Ga0066709_1005916521	3300009137	Grasslands Soil	MQGDTAARESNSPAVGLFQKAHGKMVMLQRLDAQLTSLLEQRRKIQDELSSVQAQINDEFDRVMRQAEETPARILSEIAEAGHGGAPRPVAGRLAEPEAANA*
Ga0066709_1015451921	3300009137	Grasslands Soil	NNSPAVGLFQKAHGKMVMLQRLDAQLASLLEQRRKIQEELTSTQSQINDEFDRVMRQAEEAPARILSEIAESTRGGAPARPANRLAEHTEAANA*
Ga0105243_116804251	3300009148	Miscanthus Rhizosphere	MQGDTAARESNSPAVGLFQKAHGKMVMLQRLDAQLGSLLEQRRKIQDELSAVQSHINDEFARVMRAAEETPARILTEIAESSRNGAPARSAGRLPEPEGAEA*
Ga0111538_102772042	3300009156	Populus Rhizosphere	MQGDTAARESNSPAVGLFQKAHGKMVMLQRLDAQLGSLLEQRRKIQDELSSVQAQINDEFDRVMRQAEETPARILSEIAEGTAGGGARPVAGRLAEPEHAGA*
Ga0105248_115393212	3300009177	Switchgrass Rhizosphere	MQGDTGSANNSPAVGLFQKAHGKMVMLQRLDAQLASLLEQRRKIQEELTSTQSQINDECDRVMRQAEEAPARILSEIAESSRGGAPARPANRLAGEGV
Ga0105248_118328421	3300009177	Switchgrass Rhizosphere	MQGEATTRETNSPAVGLFQKAHGKMVMLQRLDAQLASLLEQRRKIQDELSSVQSQINDEFDRVMRQAEETPARILTEIAESVRNGGSRPVGRLAEPETANA*
Ga0105238_110002121	3300009551	Corn Rhizosphere	MQGDTAVREGNSPAVGLFQKAHGKMVMLQRLDAQLASLLEQRRKIQDELSSVQAQINDEFDRVMRQAEETPARILTEIAENSRNGSAPARPAGRLPEPAEA*
Ga0131077_110868632	3300009873	Wastewater	FRFSKECQMQGDNSAANSSPAVGLFQKAHGKMVMLQRLDAQLGSLLEQRRKIQDELSAVQSQINDEFDRVMRQAEETPARILSEIAESVHTTRPVAGRLAEPEAASA*
Ga0126305_108003691	3300010036	Serpentine Soil	MQGDTASRENNSPAVGLFQKAHGKMVMLQRLDAQLASLLEQRRRIQEELTSTQSQINDEFDRVMRQAEEAPARILSEIADSVRNGGGARPTNRLADVSEPASA*
Ga0126312_113042681	3300010041	Serpentine Soil	MQGDTAGASNSPAVGLFQKAHGKMVMLQRLDAQLGSLLEQRRKIQDELSSVQNQINDEFDRVMRQAEETPARILTEIADSVRNGGNTRPVAGRLAEPETANA*
Ga0126314_108330132	3300010042	Serpentine Soil	MQGDTGSNNSPAVGLFQKAHGKMVMLQRLDAQLSSLLEQRRKIQEELTSTQAQINDEFDRVMRQAEEAPARILSEIAESARGGTARPTNRLAEHTEPANA*
Ga0126310_109367781	3300010044	Serpentine Soil	MQGDTAVREGNSPAVGLFQKAHGKMVMLQRLDAQLGSLLEQRRKIQDELSAVQNQINEEFDRVMRQAEETPARILTEIAETSRNGSAPRAMGRLAEPESANA*
Ga0126311_110118451	3300010045	Serpentine Soil	MQGDTTARESNSPAVGLFQKAHGKMVMLQRLDAQLGSLLEQRRKIQDELSTIQNQINDEFDRVMRQAEEMPARILSEIADSSRNGAAGAGGAAGAAGRPVARLT
Ga0126311_112696931	3300010045	Serpentine Soil	MQGDTAVREGNSPAVGLFQKAHGKMVMLQRLDAQLGSLLEQRRKIQDELSSVQNQINEEFDRVMRQAEETPARILTEIAETSRNGSAPRAMGRLAEPESANA*
Ga0127486_10530331	3300010128	Grasslands Soil	MGRPVVIATTRFFSKESAMQGDTTARETNSPAVGLFQKAHGKMVMLQRLDAQLGSLLEQRRKIQDELSSVQAQINDEFDRVMRQAEETPARILSEIAEGGHGGN*
Ga0126306_117933731	3300010166	Serpentine Soil	MQGDTAGASNSPAVGLFQKAHGKMVMLQRLDAQLASLLEQRRKIQDELSSVQNQINDEFDRVMRQAEETPARILTEIADSVRNGGNTRPVAGRLAEPETANA*
Ga0134063_105828851	3300010335	Grasslands Soil	LDLSSSPIHGFHSKEFRMQGDTAARESNSPAVGLFQKAHGKMVMLQRLDAQLASLLEQRRKIQDELSSVQSQINDEFDRVMRQAEETPARILTEIAENARNGSPAPARQASRLPEPAEA*
Ga0134126_103831871	3300010396	Terrestrial Soil	MQGDTNVREGSSPAVGLFQKAHGKMVMLQRLDAQLASLLEQRRKIQDELSAVQSNINDEFDRVMRAAEETPARILTEIAESARNGSATPARPAGRLPEPETADA*
Ga0134122_128441692	3300010400	Terrestrial Soil	MQGDTAARESNSPAVGLFQKAHGKMVMLQRLDAQLGSLLEQRRKIQDELSSIQAQINDEFDRVMRQAEETPARILDAIADSARNGSAPRPVA
Ga0150985_1004885151	3300012212	Avena Fatua Rhizosphere	MQGDTAVREANSPAVGLFQKAHGKMVMLQRLDAQLASLLEQRRKIQDELSSVQNHINDEFDRVMRQAEETPARILSEIAETSRNGAPARPASRLPQPADAE*
Ga0150985_1054197801	3300012212	Avena Fatua Rhizosphere	MQGDTATSNNSPAVGLFQKAHGKMVMLQRLDAQLASLLEQRRKIQEELTSTQSQINDEFDRVMRQAEEAPARILSEIADSARGGTARPTNRLAEHTEPANA*
Ga0150985_1058289032	3300012212	Avena Fatua Rhizosphere	MQGDTATQGASPAVGLFQKAHGKMVMLQRLDAQLASLLEQRRKIQDELSSVQSHINDEFDRVMRAAEETPARILTEIAESSRNGAPVRSAGRLPEPEGAEA*
Ga0150985_1058388702	3300012212	Avena Fatua Rhizosphere	MQGDTAARESNSPAVGLFQKAHGKMVMLQRLDAQLGSLLEQRRKIQDELSSVQAQINDEFDRVMRQAEETPARILSEIAESTHGGGSRPIAGRLAEPEAANA*
Ga0150985_1151474111	3300012212	Avena Fatua Rhizosphere	MQGDTAVREGNSPAVGLFQKAHGKMVMLQRLDAQLGSLLEQRRKIQDELSAVQNQINEEFDRVMRQAEETPARILTEIAETSRNGRAPRAMGRLAEPESANA*
Ga0150985_1185467261	3300012212	Avena Fatua Rhizosphere	MQGDTAARESNSPAVGLFQKAHGKMVMLQRLDAQLASLLEQRRKIQDELSSVQSSINDEFDRVMRQAEETPARILSEIAESAHGGGTRPVAGRLAAAEPEGANA*
Ga0150985_1199911561	3300012212	Avena Fatua Rhizosphere	MQGDTTAREGNSPAVGLFQKAHGKMVMLQRLDSQLASLLEQRRKIQDELSSVQSQINDEFDRVMRQAEETPARILTEIAESVRNGGGNTRPVAGRLAEPEAANA*
Ga0150985_1205001871	3300012212	Avena Fatua Rhizosphere	MQGDTAVREGNSPAVGLFQKAHGKMVMLQRLDAQLGSLLEQRRKIQDELSSVQSQINDEFDRVMRQAEETPARILTEIAESSRNGAPARQPSRLPEPAEA*
Ga0137366_105698811	3300012354	Vadose Zone Soil	MQGETTAREANSPAVGLFQKAHGKMVMLQRLDAQLASLLEQRRKIQDELSSVQSQINDEFDRVMRQAEETPARILSEIAESAHSNSRPVA
Ga0150984_1043005521	3300012469	Avena Fatua Rhizosphere	MQGDTAARETNSPAVGLFQKAHGKMVMLQRLDSQLASLLEQRRKIQDELSSVQSQINDEFDRVMRQAEETPARILTEIAESARNGSPAARPVGRLAEPEAANA*
Ga0150984_1078407611	3300012469	Avena Fatua Rhizosphere	MQGEATGRETNTAAVGLFQKAHGKMVMLQRLDSQLTSLLEQRRKIQDELSNIQLQINDEFDRVMRQAEETPARILDAIADSARNGSAPRPIAGRLAEPEAASA*
Ga0150984_1163047741	3300012469	Avena Fatua Rhizosphere	MQGDTAARESNSPAVGLFQKAHGKMVMLQRLDAQLASLLEQRRKIQDELSSVQLQINDEFDRVMRQAEETPARILSEIAEAGHGGGSRPVAGRLAEPEAANA*
Ga0157306_103316971	3300012912	Soil	MQGDTAVREANSPAVGLFQKAHGKMVMLQRLDAQLASLLEQRRKIQDELSSVQNQINDEFDRVMRQAEETPARILTEIAESSRNGAPARPASRLPQPADTE*
Ga0164298_112899041	3300012955	Soil	GLFQKAHGKMVMLQRLDAQLSTLLEQRRKIQDELSSVQSQINDEFDRVMRQAEETPARILTEIADTARNGSRPIAGRLAEPEAANA*
Ga0157371_111186911	3300013102	Corn Rhizosphere	MQGESATQGSSPAVGLFQKAHGKMVMLQRLDAQLGSLLEQRRKIQDELSSVQAQINDEFDRVMRQAEETPARILSEIAEGGSGGARPVAGRLAEPEHAGA*
Ga0157369_114086682	3300013105	Corn Rhizosphere	MQGESATQGSSPAVGLFQKAHGKMVMLQRLDAQLASLLEQRRKIQDELSSVQSQINDEFDRVMRQAEETPARILTEIAESARNGAPAARPVGRLAEPEAANA*
Ga0157378_104223802	3300013297	Miscanthus Rhizosphere	MQGESASNSPAVGLFQKAHGKMVMLQRLDAQLASLLEQRRKIQDELSSVQSSINDEFDRVMRQAEETPARILSEIAEGSSGNSRPVAGRLAEQTEAASA*
Ga0157372_114874322	3300013307	Corn Rhizosphere	MQGDTAVREGNSPAVGLFQKAHGKMVMLQRLDAQLASLLEQRRKIQDELSSVQSQINDEFDRVMRQAEETPARILTEIAENSRN
Ga0157375_121797122	3300013308	Miscanthus Rhizosphere	MQGDTAVREANSPAVGLFQKAHGKMVMLQRLDAQLSSLLEQRRKIQDELSSVQNQINDEFDRVMRQAEETPARILTEIAESSRNGAPARPASRLPQPADAE*
Ga0157375_129153841	3300013308	Miscanthus Rhizosphere	MQGDTASNNSPAVGLFQKAHGKMVMLQRLDAQLASLLEQRRKIQDELSSTQAQINDEFDRVMRQAEDAPARILSEIADSVRGGSSARPTNRLAEHSEPANA*
Ga0157375_137783231	3300013308	Miscanthus Rhizosphere	MQGDTAVRESNSPAVGLFQKAHGKMVMLQRLDAQLASLLEQRRKIQDELSSVQNQINDEFDRVMRQAEETPARILTEIAESS
Ga0157380_135226641	3300014326	Switchgrass Rhizosphere	MQGDTAARESNSPAVGLFQKAHGKMVMLQRLDAQLGSLLEQRRKIQDELSSVQAQINDEFDRVMRQAEETPARILSEIAEGGTHSCGARPVAGRLAEPEH
Ga0182021_125994521	3300014502	Fen	MGNDLSYRHTRFSSKEFQMQGDTAVREGSSPAVGLFQKAHGKMVMLQRLDAQLASLLEQRRKIQDELSSVQSQINDEFDRVMRAAEETPARILTEIAESNRNGAPARSAGRLPEPEGAEA
Ga0157379_119262842	3300014968	Switchgrass Rhizosphere	EATAREANSPAVGLFQKAHGKMVMLQRLDAQLASLLEQRRKIQDELSSVQASINDEFDRVMRAAEETPARILSEIAEGASGNSRPVAGRLAEQTEAASA*
Ga0157376_130810001	3300014969	Miscanthus Rhizosphere	ELQMQGDTGSANNSPAVGLFQKAHGKMVMLQRLDAQLASLLEQRRKIQEELTSTQSQINDEFDRVMRQAEEAPARILSEIAESSRGGAPARPANRLAEHTEAANA*
Ga0132257_1030414091	3300015373	Arabidopsis Rhizosphere	MQGDTAARESNSPAVGLFQKAHGKMVMLQRLDAQLGSLLEQRRKIQDELSGIQSQINDEFDRVMRQAEEAPARILSEIAESSRGGAPARPANRLAEHT
Ga0184624_103751431	3300018073	Groundwater Sediment	MQGDTAVREANSPAVGLFQKAHGKMVMLQRLDAQLGSLLEQRRKIQDELSSVQNQINDEFDRVMRQAEETPARILTEIAESSRNGAPARPASRLPQPADAE
Ga0190269_115717111	3300018465	Soil	MQGDTAARESNSPAVGLFQKAHGKMVMLQRLDAQLSSLLEQRRKIQDELSSVQNQINDEFDRVMRAAEETPARILTEIADTARNGSRPVGRLAEPEAVNA
Ga0190274_128753741	3300018476	Soil	MQGDTAVREANSPAVGLFQKAHGKMVMLQRLDAQLGSLLEQRRKIQDELSSVQNQINDEFDRVMRQAEETPARILTEIAESSRNGAPARPASRLPQP
Ga0066669_114939151	3300018482	Grasslands Soil	MQGDTGSANNSPAVGLFQKAHGKMVMLQRLDAQLASLLEQRRKIQEELTSTQSQINDEFDRVMRAAEEAPARILSEIAESVRGGAPARPANRLAEHTEAANA
Ga0206356_111258121	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	MQGESATQGSSPAVGLFQKAHGKMVMLQRLDAQLASLLEQRRKIQDELSSVQAQINDEFDRVMRQAEETPARILTEIADTSRNSRPIAGRLAEPEPASA
Ga0124853_14322171	3300024056	Freshwater Wetlands	MQGDTAVREGASPAVGLFQKAHGKMVMLQRLDAQLASLLEQRRKIQDELSSVQAQINDEFDRVMRQAEETPARILTEIAESSRNGAPARATGRLPEPKPPKPDLPAGRRYFS
Ga0207662_109563001	3300025918	Switchgrass Rhizosphere	MQGDTAARESNSPAVGLFQKAHGKMVMLQRLDAQLGSLLEQRRKIQDELSSVQSQINDEFDRVMRQAEETPARILTEIAESVRGGGNARPVGRL
Ga0207681_113613371	3300025923	Switchgrass Rhizosphere	MQGETTARESNSPAVGLFQKAHGKMVMLQRLDAQLASLLEQRRKIQDELSSVQSQINDEFDRVMRQAEETPARILTEIAESVRNGGARPVGRLAEPETANA
Ga0207650_103652222	3300025925	Switchgrass Rhizosphere	MQGDTAARESNSPAVGLFQKAHGKMVMLQRLDAQLGSLLEQRRKIQDELSSVQAQINDEFDRVMRQAEETPARILSEIAEGTAGGGARPVAGRLAEPEHAGA
Ga0207659_114631182	3300025926	Miscanthus Rhizosphere	MQGDTAGRESNSPAVGLFQKAHGKMVMLQRLDAQLGSLLEQRRKIQDELSSVQSQINDEFDRVMRQAEETPARILSEIAETGRHDTRVAGRLAEPEAANA
Ga0207687_113865871	3300025927	Miscanthus Rhizosphere	MQGDTATQGASPAVGLFQKAHGKMVMLQRLDAQLASLLEQRRKIQDELSAVQSHINDEFDRVMRAAEETPARILTEIAESSRNGAPARSAGRLPEPEGAEA
Ga0207644_111649991	3300025931	Switchgrass Rhizosphere	MQGDTTARESNSPAVGLFQKAHGKMVMLQRLDSQLASLLEQRRKIQDELSSVQSQINDEFDRVMRQAEETPARILTEIAESVRNGGGNTRPVAGRLAEPEAANA
Ga0207670_113879561	3300025936	Switchgrass Rhizosphere	MQGDTAARESNSPAVGLFQKAHGKMVMLQRLDAQLGSLLEQRRKIQDELSSVQAQINDEFDRVMRQAEETPARILSEIAEGGSGGARPVAGRLAEPEHAGA
Ga0207651_111124382	3300025960	Switchgrass Rhizosphere	QGDTTARESNSPAVGLFQKAHGKMVMLQRLDAQLSSLLEQRRKIQDELSSVQSQINDEFDRVMRQAEETPARILSEIAESANTRPVGRLAEPETANA
Ga0207651_119378071	3300025960	Switchgrass Rhizosphere	VGLFQKAHGKMVMLQRLDAQLGSLLEQRRKIQDELSSVQSQINDEFDRVMRQAEETPARILSEIAETGRHDTRVAGRLAEPEAANA
Ga0207668_113631741	3300025972	Switchgrass Rhizosphere	MQGDTAVREANSPAVGLFQKAHGKMVMLQRLDAQLASLLEQRRKIQDELSSVQNQINDEFDRVMRQAEETPARILTEIAESSRNGAP
Ga0207658_118842201	3300025986	Switchgrass Rhizosphere	MQGDTAARESNSPAVGLFQKAHGKMVMLQRLDAQLGSLLEQRRKIQDELSSVQAQINDEFDRVMRQAEETPARILSEIAEGGSGGAR
Ga0207708_115164681	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MQGDTAVREANSPAVGLFQKAHGKMVMLQRLDAQLASLLEQRRKIQDELSSVQAQINDEFDRVMRQAEETPARILSEIAEGGASGARPVAGRLAEPEHANA
Ga0268266_120670311	3300028379	Switchgrass Rhizosphere	MQGDTAVREGNSPAVGLFQKAHGKMVMLQRLDAQLASLLEQRRKIQDELSSVQGQINDEFDRVMRQAEETPARILTEIAESGRNSAPARSAGRLPEPAEA
Ga0268264_111669751	3300028381	Switchgrass Rhizosphere	MQGDTATQGASPAVGLFQKAHGKMVMLQRLDAQLGSLLEQRRKIQDELSSVQAQINDEFDRVMRQAEETPARILSEIAEGGSGGARPVAGRLAEPEHAGA
Ga0308183_12191571	3300030988	Soil	MQGDTAVREANSPAVGLFQKAHGKMVMLQRLDSQLSSLLEQRRKIQDELSSVQSQINDEFDRVMRQAEETPARILTEIAESVRGGGNARPVNRLAEPEPVNA
Ga0308197_104489861	3300031093	Soil	MQGDTAVREANSPAVGLFQKAHGKMVMLQRLDAQLGSLLEQRRKIQDELSSVQNQINDEFDRVMRQAEETPARILSEIAEGVHGGSSRPVAGRLAEPEAANA
Ga0170824_1242121381	3300031231	Forest Soil	MQGDTAVREGNSPAVGLFQKAHGKMVMLQRLDAQLGSLLEQRRKIQDELSSVQSQINDEFDRVMRQAEETPARILTEIAESSRNGSPAPARAAGRLPEPSEA
Ga0308175_1003240472	3300031938	Soil	MQGDTAARETNSPAVGLFQKAHGKMVMLQRLDSQLASLLEQRRKIQDELSSVQSQINDEFDRVMRQAEETPARILTEIAESARNGAPAARPVGRLAEPEAANA
Ga0307409_1007451241	3300031995	Rhizosphere	MQGDTAGREGNSPAVGLFQKAHGKMVMLQRLDAQLGSLLEQRRKIQDELSAVQSQINDEFDRVMRQAEETPARILTEIADSARNGSRPVGRLAEPEPANA
Ga0308173_116690991	3300032074	Soil	MQGDPATPGNSPAVGLFQKAHGKMVMLQRLDAQLGSLLEQRRKIQDELSAVQSQINDEFDRVMRQAEETPARILTEIADTARNGSRPIAGRLAEPEPANA
Ga0335082_103823522	3300032782	Soil	MQGETASNSPAVGLFQKAHGKMVMLQRLDAQLASLLEQRRKIQDELSSVQASINDEFDRVMRQAEETPARILSEIAENATGGSAPRPVAGRLAEQTEAANA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F082840

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences