Metagenome / Metatranscriptome Family F082807

Basic Information
Family ID	F082807
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	52 residues
Representative Sequence	MKNYEDYKLTPRQEKFVRLANDNGFVNKISRKDIVILQAKYGIKWPAWL
Number of Associated Samples	108
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	1.77 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	100
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (98.230 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (30.088 % of family members)
Environment Ontology (ENVO)	Unclassified (76.991 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (86.726 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 42.86% β-sheet: 0.00% Coil/Unstructured: 57.14%
Feature Viewer

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Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF13759	2OG-FeII_Oxy_5	1.77
PF16363	GDP_Man_Dehyd	0.88
PF00044	Gp_dh_N	0.88
PF01327	Pep_deformylase	0.88
PF08406	CbbQ_C	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG0057	Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase	Carbohydrate transport and metabolism [G]	0.88
COG0242	Peptide deformylase	Translation, ribosomal structure and biogenesis [J]	0.88
COG0714	MoxR-like ATPase	General function prediction only [R]	0.88

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.23 %
All Organisms	root	All Organisms	1.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.23 %
Viruses	superkingdom	All Organisms → Viruses	1.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.23 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.77 %

Scaffold	Taxonomy	Length	IMG/M Link
3300001349\|JGI20160J14292_10022381	All Organisms → Viruses → Predicted Viral	3519	Open in IMG/M
3300007276\|Ga0070747_1003092	Not Available	7773	Open in IMG/M
(restricted) 3300024260\|Ga0233441_1016673	All Organisms → Viruses → Predicted Viral	3458	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Oceanic	Environmental → Aquatic → Marine → Oceanic	39.82%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	15.93%
Unclassified	Environmental → Aquatic → Marine → Unclassified	10.62%
Coastal	Environmental → Aquatic → Marine → Coastal	7.96%
Strait	Environmental → Aquatic → Marine → Strait	7.08%
Inlet	Environmental → Aquatic → Marine → Inlet	6.19%
Pelagic	Environmental → Aquatic → Marine → Pelagic	6.19%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	5.31%
Hydrothermal Vents	Environmental → Aquatic → Marine → Hydrothermal Vents	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	32.74%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	10.62%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	8.85%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	7.96%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	7.08%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	7.08%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	6.19%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	6.19%
Aphotic Zone	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone	5.31%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	5.31%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	1.77%
Diffuse Flow	Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow	0.89%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	30.09%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	7.08%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	7.08%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	5.31%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	5.31%
Marine	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine	4.42%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	4.42%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	4.42%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	4.42%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	3.54%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	2.65%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	2.65%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	2.65%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	1.77%
Marine	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine	1.77%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	1.77%
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	1.77%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	1.77%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	0.89%
Background Seawater	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Background Seawater	0.89%
Marine	Environmental → Aquatic → Marine → Inlet → Unclassified → Marine	0.89%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	0.89%
Sackhole Brine	Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine	0.89%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	0.89%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	0.89%
Diffuse Hydrothermal Flow Volcanic Vent	Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Flow Volcanic Vent	0.89%

Visualization

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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000101	Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010	Environmental	Open in IMG/M
3300000116	Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010	Environmental	Open in IMG/M
3300000152	Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2008 P12 500m	Environmental	Open in IMG/M
3300000265	Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_A_09_P04_10	Environmental	Open in IMG/M
3300000323	Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2009 P20 2000m	Environmental	Open in IMG/M
3300001349	Pelagic Microbial community sample from North Sea - COGITO 998_met_10	Environmental	Open in IMG/M
3300001354	Pelagic Microbial community sample from North Sea - COGITO 998_met_05	Environmental	Open in IMG/M
3300001450	Marine viral communities from the Pacific Ocean - LP-53	Environmental	Open in IMG/M
3300002919	Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - Bottom_A/KNORR_S2/LV	Environmental	Open in IMG/M
3300003498	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_130m_DNA	Environmental	Open in IMG/M
3300004110	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S2LV_100m_DNA	Environmental	Open in IMG/M
3300004273	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_135m	Environmental	Open in IMG/M
3300004279	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_10m	Environmental	Open in IMG/M
3300005951	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_250_ad_251m_LV_A	Environmental	Open in IMG/M
3300005969	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_Bottom_ad_4513_LV_A	Environmental	Open in IMG/M
3300006012	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_AAIW_ad_750m_LV_A	Environmental	Open in IMG/M
3300006013	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_NADW_ad_2500m_LV_B	Environmental	Open in IMG/M
3300006083	Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS908_Marker33_DNA	Environmental	Open in IMG/M
3300006313	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_2_0770m	Environmental	Open in IMG/M
3300006324	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_0500m	Environmental	Open in IMG/M
3300006340	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m	Environmental	Open in IMG/M
3300006344	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0500m	Environmental	Open in IMG/M
3300006752	Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG	Environmental	Open in IMG/M
3300006789	Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG	Environmental	Open in IMG/M
3300006947	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNA	Environmental	Open in IMG/M
3300006990	Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG	Environmental	Open in IMG/M
3300007276	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31	Environmental	Open in IMG/M
3300007291	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_AAIW_ad_750m_LV_A	Environmental	Open in IMG/M
3300007508	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 2.7-0.2um, replicate a	Environmental	Open in IMG/M
3300007758	Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample CTDPlume_2015_DNA CLC_assembly	Environmental	Open in IMG/M
3300008050	Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG	Environmental	Open in IMG/M
3300008629	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 200m, 2.7-0.2um	Environmental	Open in IMG/M
3300008999	Estuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.545	Environmental	Open in IMG/M
3300009003	Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.725	Environmental	Open in IMG/M
3300009056	Estuarine microbial communities from the Columbia River estuary - metaG 1449A-3	Environmental	Open in IMG/M
3300009080	Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.759	Environmental	Open in IMG/M
3300009172	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154	Environmental	Open in IMG/M
3300009173	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134	Environmental	Open in IMG/M
3300009409	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150	Environmental	Open in IMG/M
3300009432	Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean - Greenland ARC118M Metagenome	Environmental	Open in IMG/M
3300009433	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330	Environmental	Open in IMG/M
3300009436	Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome	Environmental	Open in IMG/M
3300010151	Marine viral communities from the Subarctic Pacific Ocean - 22_ETSP_OMZ_AT15343 metaG	Environmental	Open in IMG/M
3300011128	Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, 0.02	Environmental	Open in IMG/M
3300012953	Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome	Environmental	Open in IMG/M
3300014973	Marine microbial communities to study oil droplet degradation from Trondheimsfjord, Norway - 0116 : 2 days incubation	Environmental	Open in IMG/M
3300017717	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 27 SPOT_SRF_2011-10-25	Environmental	Open in IMG/M
3300017731	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 39 SPOT_SRF_2013-01-16	Environmental	Open in IMG/M
3300017739	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10	Environmental	Open in IMG/M
3300017752	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 23 SPOT_SRF_2011-06-22	Environmental	Open in IMG/M
3300017758	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 32 SPOT_SRF_2012-05-30	Environmental	Open in IMG/M
3300017759	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 37 SPOT_SRF_2012-11-28	Environmental	Open in IMG/M
3300017765	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 36 SPOT_SRF_2012-09-28	Environmental	Open in IMG/M
3300017767	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 29 SPOT_SRF_2011-12-20	Environmental	Open in IMG/M
3300020165	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1	Environmental	Open in IMG/M
3300020396	Marine microbial communities from Tara Oceans - TARA_B100000767 (ERX555915-ERR599122)	Environmental	Open in IMG/M
3300020431	Marine microbial communities from Tara Oceans - TARA_B100001142 (ERX556101-ERR598983)	Environmental	Open in IMG/M
3300020595	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160412_1	Environmental	Open in IMG/M
3300021085	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015	Environmental	Open in IMG/M
3300021389	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO127	Environmental	Open in IMG/M
3300021442	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 200m 12015	Environmental	Open in IMG/M
3300021957	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D	Environmental	Open in IMG/M
3300021960	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9D	Environmental	Open in IMG/M
3300022888 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_120_MG	Environmental	Open in IMG/M
3300024237	Seawater microbial communities from Monterey Bay, California, United States - 65D	Environmental	Open in IMG/M
3300024255 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_10_MG	Environmental	Open in IMG/M
3300024259 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_200_MG	Environmental	Open in IMG/M
3300024260 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_135_MG	Environmental	Open in IMG/M
3300024299 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_150_MG	Environmental	Open in IMG/M
3300024327 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_120_MG	Environmental	Open in IMG/M
3300024346	Whole water sample coassembly	Environmental	Open in IMG/M
3300025103	Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG (SPAdes)	Environmental	Open in IMG/M
3300025168	Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)	Environmental	Open in IMG/M
3300025488	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_10m_DNA (SPAdes)	Environmental	Open in IMG/M
3300025622	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_150m (SPAdes)	Environmental	Open in IMG/M
3300025632	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413 (SPAdes)	Environmental	Open in IMG/M
3300025709	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S4LV_130m_DNA (SPAdes)	Environmental	Open in IMG/M
3300025821	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110421 (SPAdes)	Environmental	Open in IMG/M
3300025830	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110407 (SPAdes)	Environmental	Open in IMG/M
3300025881	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120412 (SPAdes)	Environmental	Open in IMG/M
3300025886	Pelagic Microbial community sample from North Sea - COGITO 998_met_10 (SPAdes)	Environmental	Open in IMG/M
3300025894	Pelagic Microbial community sample from North Sea - COGITO 998_met_09 (SPAdes)	Environmental	Open in IMG/M
3300026091	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_AAIW_ad_750m_LV_A (SPAdes)	Environmental	Open in IMG/M
3300026199	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV51 (SPAdes)	Environmental	Open in IMG/M
3300026213	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV73 (SPAdes)	Environmental	Open in IMG/M
3300027159	Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.573 (SPAdes)	Environmental	Open in IMG/M
3300027191	Estuarine microbial communities from the Columbia River estuary - metaG S.737 (SPAdes)	Environmental	Open in IMG/M
3300027197	Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.743 (SPAdes)	Environmental	Open in IMG/M
3300027406	Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_07_M0_10 (SPAdes)	Environmental	Open in IMG/M
3300027677	Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_300m (SPAdes)	Environmental	Open in IMG/M
3300027687	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)	Environmental	Open in IMG/M
3300027752	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154 (SPAdes)	Environmental	Open in IMG/M
3300027753	Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741 (SPAdes)	Environmental	Open in IMG/M
3300027779	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)	Environmental	Open in IMG/M
3300027788	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88 (SPAdes)	Environmental	Open in IMG/M
3300027838	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)	Environmental	Open in IMG/M
3300027844	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134 (SPAdes)	Environmental	Open in IMG/M
3300027849	Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean - Greenland ARC118M Metagenome (SPAdes)	Environmental	Open in IMG/M
3300028175	Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_135m	Environmental	Open in IMG/M
3300028194	Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_10m	Environmental	Open in IMG/M
3300028280	Seawater microbial communities from Monterey Bay, California, United States - 58D	Environmental	Open in IMG/M
3300028489	Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_1000m	Environmental	Open in IMG/M
3300031142	Marine microbial communities from water near the shore, Antarctic Ocean - #353	Environmental	Open in IMG/M
3300031519	Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2	Environmental	Open in IMG/M
3300031694	Marine microbial communities from water near the shore, Antarctic Ocean - #231	Environmental	Open in IMG/M
3300031703	Marine microbial communities from water near the shore, Antarctic Ocean - #34	Environmental	Open in IMG/M
3300031851	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 21515	Environmental	Open in IMG/M
3300032130	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 34915	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOSum2010_100836192	3300000101	Marine	MKNYEDYKLTPRQEKFVRLANDNGFVNKISRKDIVILQAKYGVKWPAWLIKNTVFRYGRGVYKL
DelMOSpr2010_100493652	3300000116	Marine	MKNYEDYKLTPRQEKFVRLANDNGFVNKISRKDIVILQAKYGVKWPAWLIKNTVFRYGRG
LPjun08P12500mDRAFT_10292672	3300000152	Marine	MEDIKLTSRQERFVKLANDEGFTNKISRKDITILQAKYGIKKPA
LP_A_09_P04_10DRAFT_10505772	3300000265	Marine	MKNYEDYIMNRHQEKFVKLANENGFFIKISRKEIVMLEAKYGIKKPEWLMKNKLFRY
LPaug09P202000mDRAFT_10070841	3300000323	Marine	MKMEDIKLNPRQERFVKLANEEGFTNKISRKNIIILQAKYGIKKPEWLMKNTVYRYERGVYKL
JGI20160J14292_100223814	3300001349	Pelagic Marine	MIMKNFEDYKLTPRQEKFVRLANEWGFTNKITRKQITLLQAHYGIKKPAWLMKNSISIRKRCV*
JGI20155J14468_101829182	3300001354	Pelagic Marine	YKMTPRQEKFVRLANDNGFVNKISRKDIVILQAKYGVKWPAWLIKNTVFRYGRGVYKLPSLLSAQRSL*
JGI24006J15134_100387441	3300001450	Marine	MKKNQIMEDIKLTRHQEKFVKLANENGFTIKISRKDIIILQAKYGIKWPVWLVKNT
JGI26061J44794_10669071	3300002919	Marine	MKKTQIMEDIKLTAHQEKFVKLANDNGFTLKITRKDIIILQAKYGIKW
JGI26239J51126_10466872	3300003498	Marine	MKNFEDYKMTPRQEKFVRLANEWGFTNKITRKQITLLQAHYGIKKPAWLMKNP
Ga0008648_101723082	3300004110	Marine	MKNFEDYKMTPRQEKFVRLANEWGFTNKITRKQITLLQAH
Ga0066608_11155471	3300004273	Marine	MKNFEDYKLTPRQEKFVRLANEWGFTNKITRKQITLLQAHYGIKKP
Ga0066605_102991762	3300004279	Marine	MIMKNFEDYKMTPRQEKFVRLANEWGFTNKITRKQITLLQAH
Ga0066379_102340961	3300005951	Marine	MKMEDIKLNPRQERFVKLANEEGFTNKISRKDIIILQAKYGIKKPTWLMKNTVFRYDRGVYKLPSLLS
Ga0066369_100636732	3300005969	Marine	MEDIKLNPRQERFVKLANDEGFTNKISRKDIIILQAKYGIKKPEWLMKNKLFRYERGVY
Ga0066369_101581861	3300005969	Marine	MKKTQIMEDIKLTAHQEKFVKLANDNGFTLKISRKDIVILQAKYGIKKP
Ga0066374_100258592	3300006012	Marine	MKMEDIKLNPRQERFVKLANDNGFTNKISRKDIIILQAKYGIKKPTWLMKNIAYRYERGVYK
Ga0066382_103354722	3300006013	Marine	MKNYEDYIMNRHQEKFVKLANENGFFIKISRKEIVMLEAKYGIKKPEWLMK
Ga0081762_10552651	3300006083	Diffuse Hydrothermal Flow Volcanic Vent	MKMEDIKLNPRQERFVKLANEEGFTHKISRKNIIILQAKYGIKKPEWLMKNKLFRY
Ga0068472_102607331	3300006313	Marine	MKMEDIKLNPRQERFVKLANENGFTHKISRKDIIILQAKYGI
Ga0068476_11541491	3300006324	Marine	MIEDIKLNPRQERFVKLANDEGFTNKISRKDITILQAKYGIKKPTWLMKNITY
Ga0068503_104223392	3300006340	Marine	MKMEDIKLNPRQERFVKLANDNGFTNKISRKDIIILQAKYGIKKPEWLMK
Ga0099695_13143702	3300006344	Marine	MKMEDIKLNPRQERFVKLANDEGFTNKISRKDIIILQAKYGIKKPTWLMKN
Ga0098048_11211961	3300006752	Marine	MIMKRMEDIKLTPRQEKFVKLANDEGFTNKITRKDITILQAKYGIKKP
Ga0098048_11342271	3300006752	Marine	MKMEDIKLNPRQERFVKLANDEGFTNKISRKDIIILQAKYGIKKP
Ga0098054_11377701	3300006789	Marine	MKMEDIKLNPRQERFVKLANENGFTNKISRKSIIILQAKYGIKKPEWLMKNKLFRYER
Ga0075444_103758362	3300006947	Marine	MKNYEDYKMTPRQEKFVKLANDNGFVTKISRKDIVILQAKYGIKWPAWLIKNSVFRYNRGVYKLPSLLSVE
Ga0098046_10746612	3300006990	Marine	MKRMEDIKLTPRQEKFVKLANDEGFTNKITRKDITILQAK
Ga0070747_10030921	3300007276	Aqueous	MKNYEDYKLTPRQEKFVRLANDNGFVNKISRKDIVILQAKYGVKWPAWLIKNTVFRYGRGVYKLPSLLSA
Ga0066367_12771582	3300007291	Marine	MGKIMKMEDIRLNPRQERFVKLANDEGFTDKITRKDITILQAKYGIKK
Ga0105011_10074371	3300007508	Marine	MGKVMKMEDIKLNPRQERFVKLANDEGFTNRISRKDIIILQAKYGIKKPTWLMKNT
Ga0105668_10348221	3300007758	Background Seawater	MKMEDIKLNPRQERFVKLANENGFTNKISRTDIIILQAKYGIKK
Ga0098052_11804161	3300008050	Marine	MKMEDIKLNPRQERFVKLANDNGFTNKISRKDIIILQAKYGIKKPTWLMKNIVFRYDRGVYKL
Ga0115658_10180687	3300008629	Marine	MGKVMKMEDIKLNPRQERFVKLANDEGFTNKISRKDIVILQAKYGIKK
Ga0102816_12574322	3300008999	Estuarine	MKNYEDYIMNRHQEKFVKLANENGFFIKISRKEIVMLE
Ga0102813_11409012	3300009003	Estuarine	MKNYEDYKMNRHQEKFVKLANENGFKNKISRKEIVILEAKYGIKKPYWLMKNKLFRYGRG
Ga0102860_11660461	3300009056	Estuarine	MIMKNYEDYKLTPRQEKFVRLANDNGFVNKITGKDITILQ
Ga0102815_107014681	3300009080	Estuarine	MKNYEDYKMTPRQEKFVKLANDNGFVTKISRKDIVILQAKYGIKW
Ga0114995_105408601	3300009172	Marine	MKNYEDYKITPRQEKFVKLANDNGFVIKISRKDIVILQAKYGIKWPAWLIKNSVFRYSRGVYK
Ga0114996_106789951	3300009173	Marine	MKNYEDYKMTPRQEKFVKLANDNGFVTKISRKDIVILQA
Ga0114993_103515322	3300009409	Marine	MMEDIKLNTRQERFVKLANDEGFTNKISRKDIIILQAKYGIKK
Ga0115005_116688981	3300009432	Marine	MKNYEDYKMTRHQEKFVKLANDNGFVVKISRKDIVILQAKYGIKWPA
Ga0115545_12667672	3300009433	Pelagic Marine	MIMKNYEDYKLTPRQEKFVRLANDNGFVNKITRKD
Ga0115008_101130241	3300009436	Marine	MKNYEDYKLTPRQEKFVRLANEWGFTNKITRKQITL
Ga0115008_104929622	3300009436	Marine	MKNYEDYKMTPRQEKFVRLANEWGFTNKITRKQITLLQAHYGIK
Ga0098061_13238651	3300010151	Marine	MEKDMKMEDIKLNPRQERFVKLANENGFTNKISRKSIIILQAKYGIKKPEWLMKNKLFRYERG
Ga0151669_1085942	3300011128	Marine	MIMKRMEDIKLTPRQEKFVKLANDEGFTNKITRKD
Ga0163179_103331622	3300012953	Seawater	MIMKNYEDYKLTPRQEKFVRLANDNGFVNKISRKDIVILQAKYGIKWPAWLIK
Ga0134293_10138382	3300014973	Marine	MIMKNFEDYKMTPRQEKFVRLANEWGFTNKITRKQIPLIW*
Ga0181404_10301991	3300017717	Seawater	MKNFEDYKMTPRQEKFVRLANEWGFTNKITRKQITLLQAHYGIKKPAW
Ga0181416_11401832	3300017731	Seawater	MKNFEDYKMTPRQEKFVRLANEWGFTNKITRKQITLL
Ga0181433_10291041	3300017739	Seawater	MKNFEDYKMTPRQEKFVRLANEWGFTNKITRKQIT
Ga0181400_11865242	3300017752	Seawater	MKNFEDYKLTPRQEKFVRLANEWGFTNKITRKQITLLQAQNGNKTQAWLMKNPVFRYERGVYKL
Ga0181409_11645731	3300017758	Seawater	MKNYEDYKMNRHQEKFVKLANENGFKNKISRKEIVILEAKYGIKKPYWLMKNKLFRYGRGVYKLPSLLSV
Ga0181414_10530121	3300017759	Seawater	MEKTNTPINLNSNQEKFVKLANDHGFTLKITRKDIIILQAKYGIKWPVWLVKNKA
Ga0181413_12111312	3300017765	Seawater	MKNFEDYKMTPRQEKFVRLANEWGFTNKITRKQITLLQAHYGIKKPAWLMKNPVFR
Ga0181406_10400521	3300017767	Seawater	MKNYEDYKMNRHQEKFVKLANENGFKNKISRKEIVALEAKYGIKKPEWLMKNKLFRYGRGVYKLPS
Ga0206125_100387622	3300020165	Seawater	MKNYEDYKLTPRQEKFVRLANDNGFVNKISRKDIVILQAK
Ga0211687_101747421	3300020396	Marine	MKKTQIMEDIKLTAHQEKFVKLANDNGFTLKITRKDIIILQAKYGIKWPVW
Ga0211554_103111142	3300020431	Marine	MKNFEDYKMTPRQEKFVRLANDNGFVNKISRKDIVILQAKYGIKWPAWLIKNSVFRYRKRGKWLCSDLQQI
Ga0206126_101057621	3300020595	Seawater	MKNYEDYKLTPRQEKFVRLANDNGFVNKISRKDIVILQAKYGVKWPAWLIKNTVFRYGRGVY
Ga0206677_103848402	3300021085	Seawater	MIMKNFEDYKMTPRQEKFVRLANDNGFVNKISRKDIVILQAKYGVKWPAWLIKNTVFRYGRGVYKLPSLLSAE
Ga0213868_100790131	3300021389	Seawater	MKNYEDYKLTPRQEKFVRLANDNGFVNKISRKDIVILQAKYGVKWPAWLIKNTVFRYGRGVYKLPSLLSAE
Ga0206685_102551102	3300021442	Seawater	MKMEDIKLNPRQERFVKLANDNGFTNKISRKDIIILQAKYGIKKPTWLMKNTAYRYERGIYKLP
Ga0222717_105335072	3300021957	Estuarine Water	MKNFEDYKMTPRQEKFVRLANDNGFVNKISRKDIVILQAKYGVKWPAWLIKNTVFRYGRGVYKLPSLLSAE
Ga0222715_105576512	3300021960	Estuarine Water	MIMKNFEDYKMTPRQEKFVRLANDNGFVNKISRKDIVILQAKYGVKWPAWLIKNTVFRYGRGVYKLPSLLSA
(restricted) Ga0233428_12129651	3300022888	Seawater	MKNFEDYKLTPRQEKFVRLANEWGFTNKITRKQITLLQAHYGIKKPAWLMK
Ga0228653_10259472	3300024237	Seawater	MKNFEDYKMTPRQEKFVRLANEWGFTNKITRKQITLLQAHYGIKKPAWLMKNPVF
(restricted) Ga0233438_100744461	3300024255	Seawater	MKNYEDYKLTPRQEKFVRLANDNGFVNKISRKDIVILQAKYGVKWPAWLIKNTVFRYGRGVYKLPS
(restricted) Ga0233437_12935582	3300024259	Seawater	MKMEDIKLNPRQERFVKLANDNGFTNKISRKDIVILQAKYGIKKPTWLMKNTVY
(restricted) Ga0233441_10166731	3300024260	Seawater	MKNFEDYKMTPRQEKFVRLANEWGFTNKITRKQITLLQAHYGIKKPA
(restricted) Ga0233448_11883821	3300024299	Seawater	MIMKNFEDYKMTPRQEKFVRLANDNGFVNKISRKDIVIL
(restricted) Ga0233434_12134962	3300024327	Seawater	MKNYEDYKMNRHQEKFVILANENGFKNKISRKEIVALEAKYG
Ga0244775_103221482	3300024346	Estuarine	MKNYEDYKMNRHQEKFVKLANENGFKNKISRKEIVALEAKYGIKKPEWLMKNKLFRYGRG
Ga0208013_10587912	3300025103	Marine	MKMEDIKLNPRQERFVKLANENGFTNKISRKSIIILQAKYGIKKPEWLMKNKLFRYERGVYKLP
Ga0209337_10495621	3300025168	Marine	MKKNQIMEDIKLTRHQEKFVKLANENGFTIKISRKDIIILQAKYGIKWPVWLVKNTIYRYDRGVYK
Ga0209141_10324161	3300025488	Marine	MKNFEDYKMTPRQEKFVRLANEWGFTNKITRKQITLLQAHYGIK
Ga0209264_11778351	3300025622	Marine	MKNFEDYKMTPRQEKFVRLANEWGFTNKITRKQITLLQA
Ga0209194_11314932	3300025632	Pelagic Marine	MKNFEDYKLTPRQEKFVRLANEWGFTNKITRKQITLLQAHY
Ga0209044_10966481	3300025709	Marine	MKNFEDYKMTPRQEKFVRLANEWGFTNKITRKQITLLQAHYGIKK
Ga0209600_11914482	3300025821	Pelagic Marine	MKNFEDYKMTPRQEKFVRLANEWGFTNKITRKQITLLQAHYGIKKPAWLMKN
Ga0209832_11795342	3300025830	Pelagic Marine	MIMKNFEDYKMTPRQEKFVRLANDNGFVNKISRKDIVILQAKYGVKWPAWLIKNTVFRYGRGVYK
Ga0209309_101416271	3300025881	Pelagic Marine	MKNYEDYKLTPRQEKFVRLANDNGFVNKISRKDIVILQAKYGIKWPAWL
Ga0209632_102865071	3300025886	Pelagic Marine	MKNYEDYKLTPRQEKFVRLANDNGFVNKISRKDIVILQAKYGVKWPAWL
Ga0209335_101558061	3300025894	Pelagic Marine	MKNYEDYKLTPRQEKFVRLANDNGFVNKISRKDIVILQAKYGVKWPAWLIKNTVF
Ga0207962_10358341	3300026091	Marine	MKMEDIKLNPRQERFVKLANDNGFTNKISRKDIIILQAKYGIKKPTWLM
Ga0208638_11438531	3300026199	Marine	MMKMEDIKLNPRQERFVKLANNEGFTNKISRKNIIILQAKYGIKKPTWLMKNLVYQNKNK
Ga0208131_11383271	3300026213	Marine	MKMEDIKLNPRQERFVKLANEEGFTNKISRKDIIILQAKYGIKKPT
Ga0208020_10820652	3300027159	Estuarine	MKNYEDYKMTPRQEKFVRLANEWGFTNKITRKQITLLQA
Ga0208021_10629552	3300027191	Estuarine	MKNFEDYKMTPRQEKFVRLANEWGFTNKITRKQITLLQAHYGIKKPAWLMK
Ga0208922_10138822	3300027197	Estuarine	MKNYEDYKMNRHQEKFVILANENGFKNKISRKEIVALEAKYGIKKPEWLMKNKLFRYGRG
Ga0208965_10924521	3300027406	Marine	MKNFEDYKMTPRQEKFVRLANEWGFTNKITRKQITLLQ
Ga0209019_11257311	3300027677	Marine	MKMEDIKLNPRQERFVKLANDNGFTNKISRKDIIILQAKYGIKKPTWLMKNTV
Ga0209710_12783232	3300027687	Marine	MKNYEDYKMTRHQEKFVKLANENGFVVKISRKDIVILQAKY
Ga0209710_12853821	3300027687	Marine	MKNYEDYKMTRHQEKFVKLANENGFVIKISRKDIVILQAKYGIKK
Ga0209192_101573851	3300027752	Marine	MENYEDYKMTPRQEKFVKLANDNGFVIKISRKDIVILQAKYGIKKP
Ga0208305_103071721	3300027753	Estuarine	MKNYEDYKMNRHQEKFVKLANENGFKNKISRKEIVALEAKYGIKKPEWLMKNKLFRYGRGVYKLPSLLSV
Ga0209709_102832482	3300027779	Marine	MKKTEIMEDIKLTIHQEKFVKLANDNGFTLKISRKDIVILQAKYG
Ga0209711_102005501	3300027788	Marine	MKNYEDYKMTPRQEKFVKLANDNGFVIKISRKDIVILQAKYGIKWPAWLIKNSVFRYGRGVYKL
Ga0209089_101626452	3300027838	Marine	MENYEDYKMTPRQEKFVKLANDNGFVIKISRKDIVILQAKYGIKK
Ga0209501_106994451	3300027844	Marine	MKNYEDYKMTPRQEKFVKLANDNGFVIKISRKDIVILQAKYGIKWPAWLIKNSVFRYGRGVYKLPSLLSVE
Ga0209712_103056542	3300027849	Marine	MKNYEDYKMTPRQEKFVKLANDNGFVTKISRKDIVILQAKYGIKWPAWLI
Ga0257117_10198261	3300028175	Marine	MKNFEDYKMTPRQEKFVRLANEWGFTNKITRKQITLLQAHYGIKKPAWLMKNTVFRY
Ga0257106_13111061	3300028194	Marine	MKNYEDYIMNRHQEKFVKLANENGFFVKISRKEIVMLEAKYGIKKPEWLMKNKL
Ga0228646_11308302	3300028280	Seawater	MKNYEDYKMTPRQEKFVRLANEWGFTNKITRKQIT
Ga0257112_101473982	3300028489	Marine	MKKMEDMRLNPRQERFVKLANDEGFTNKITRKDITILQAKYGIKKPYWLMKNLIYRY
Ga0308022_11837682	3300031142	Marine	MKKTQIMEDIKLTAHQEKFVKLANDNGFILKITRKDIIILQAKYGIKWPVWLVKNTAYRFDRGVYKLPSL
Ga0307488_104034552	3300031519	Sackhole Brine	MKNYEDYKMTPRQEKFVKLANDNGFVTKISRKDIVILQAKYGIKWP
Ga0308015_104157701	3300031694	Marine	MKKTQIMEDIELTRHQEKFVKLANDNGFTLKISRKDIVILQAKYGI
Ga0308002_10598721	3300031703	Marine	MKKTQIMEDIELTRHQEKFVKLANDNGFTLKISRKDIVILQAKYG
Ga0315320_107446491	3300031851	Seawater	MKNYEDYKLTPRQEKFVRLANDNGFVNKISRKDIVILQAKYGVKWPAWLIKNTVFRYGRGVYKLPSLLS
Ga0315320_108977642	3300031851	Seawater	MKNYEDYKMTPRQEKFVRLANEWGFTNKITRKQITLLQAHYGIKKPA
Ga0315333_104157452	3300032130	Seawater	MKMEDIKLNPRQERFVKLANDNGFTNKISRKDIIILQAKYGIKK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F082807

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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