Metagenome Family F082756

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F082756
Family Type	Metagenome
Number of Sequences	113
Average Sequence Length	109 residues
Representative Sequence	MTFDITGRSVRWPDGSDGTIQQEAFDGDGSAGGRQAFVARLRVRREGKPDITGGLRFTAAAHGRMPGRDDAEKANAVALKVVSWVAQHGLTDGFFFRVDADDSGVQIFEA
Number of Associated Samples	78
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	27.43 %
% of genes near scaffold ends (potentially truncated)	35.40 %
% of genes from short scaffolds (< 2000 bps)	86.73 %
Associated GOLD sequencing projects	72
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.83

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (20.354 % of family members)
Environment Ontology (ENVO)	Unclassified (23.894 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (40.708 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 18.12% β-sheet: 36.23% Coil/Unstructured: 45.65%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.83
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.83
Powered by PDBe Molstar

Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
e.29.1.1: RNA-polymerase beta	d4c2mb_	4c2m	0.60662
e.29.1.1: RNA-polymerase beta	d1twfb_	1twf	0.59553
e.29.1.1: RNA-polymerase beta	d4g7hc_	4g7h	0.57654
e.43.1.1: Capz alpha-1 subunit	d3aa0a_	3aa0	0.53204
c.72.1.5: PfkB-like kinase	d1lhpa_	1lhp	0.5247

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF13378	MR_MLE_C	8.85
PF07638	Sigma70_ECF	7.96
PF13360	PQQ_2	5.31
PF12704	MacB_PCD	5.31
PF13442	Cytochrome_CBB3	3.54
PF13620	CarboxypepD_reg	2.65
PF00561	Abhydrolase_1	2.65
PF13570	PQQ_3	1.77
PF01784	NIF3	1.77
PF12833	HTH_18	0.88
PF13487	HD_5	0.88
PF00069	Pkinase	0.88
PF05448	AXE1	0.88
PF07606	DUF1569	0.88
PF13614	AAA_31	0.88
PF01011	PQQ	0.88
PF07995	GSDH	0.88
PF01980	TrmO	0.88
PF06071	YchF-GTPase_C	0.88
PF04542	Sigma70_r2	0.88
PF07786	HGSNAT_cat	0.88
PF07635	PSCyt1	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	8.85
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.54
COG0327	Putative GTP cyclohydrolase 1 type 2, NIF3 family	Coenzyme transport and metabolism [H]	1.77
COG3323	PII-like insert in the uncharacterized protein YqfO, YbgI/NIF3 family	Function unknown [S]	1.77
COG0012	Ribosome-binding ATPase YchF, GTP1/OBG family	Translation, ribosomal structure and biogenesis [J]	0.88
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.88
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.88
COG1506	Dipeptidyl aminopeptidase/acylaminoacyl peptidase	Amino acid transport and metabolism [E]	0.88
COG1720	tRNA (Thr-GGU) A37 N6-methylase	Translation, ribosomal structure and biogenesis [J]	0.88
COG2133	Glucose/arabinose dehydrogenase, beta-propeller fold	Carbohydrate transport and metabolism [G]	0.88
COG3458	Cephalosporin-C deacetylase or related acetyl esterase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.88
COG3503	Uncharacterized membrane protein, DUF1624 family	Function unknown [S]	0.88
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	76.11 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.42 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	0.88 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	70.80 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.42 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.88 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	0.88 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	70.80 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.42 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	0.88 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.88 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	70.80 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.42 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	0.88 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.88 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	70.80 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.42 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	0.88 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.88 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	70.80 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.42 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	0.88 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.88 %
Unclassified	root	N/A	0.00 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000550\|F24TB_16938262	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	618	Open in IMG/M
3300000956\|JGI10216J12902_101354437	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	793	Open in IMG/M
3300000956\|JGI10216J12902_103482402	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1771	Open in IMG/M
3300000956\|JGI10216J12902_106558342	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2362	Open in IMG/M
3300000956\|JGI10216J12902_111872371	All Organisms → cellular organisms → Bacteria → Acidobacteria	968	Open in IMG/M
3300003267\|soilL1_10079943	All Organisms → cellular organisms → Bacteria	1399	Open in IMG/M
3300003319\|soilL2_10067874	All Organisms → cellular organisms → Bacteria → Proteobacteria	4154	Open in IMG/M
3300004114\|Ga0062593_101787826	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	675	Open in IMG/M
3300004156\|Ga0062589_101223828	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	720	Open in IMG/M
3300004157\|Ga0062590_100528346	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1014	Open in IMG/M
3300004157\|Ga0062590_102228327	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	574	Open in IMG/M
3300004463\|Ga0063356_100055686	All Organisms → cellular organisms → Bacteria	4016	Open in IMG/M
3300004463\|Ga0063356_100489693	All Organisms → cellular organisms → Bacteria	1621	Open in IMG/M
3300004463\|Ga0063356_101236657	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1087	Open in IMG/M
3300004463\|Ga0063356_104594321	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	594	Open in IMG/M
3300004463\|Ga0063356_105982852	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	522	Open in IMG/M
3300004479\|Ga0062595_102278277	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	533	Open in IMG/M
3300004480\|Ga0062592_100027739	All Organisms → cellular organisms → Bacteria	2730	Open in IMG/M
3300004480\|Ga0062592_100193357	All Organisms → cellular organisms → Bacteria	1425	Open in IMG/M
3300004643\|Ga0062591_100335219	All Organisms → cellular organisms → Bacteria	1212	Open in IMG/M
3300004643\|Ga0062591_102362661	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	556	Open in IMG/M
3300005290\|Ga0065712_10503125	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	647	Open in IMG/M
3300005330\|Ga0070690_100904711	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	690	Open in IMG/M
3300005331\|Ga0070670_100238095	All Organisms → cellular organisms → Bacteria	1584	Open in IMG/M
3300005356\|Ga0070674_101447681	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	616	Open in IMG/M
3300005457\|Ga0070662_101207914	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	650	Open in IMG/M
3300005549\|Ga0070704_100519746	All Organisms → cellular organisms → Bacteria	1036	Open in IMG/M
3300005617\|Ga0068859_100976302	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	930	Open in IMG/M
3300006358\|Ga0068871_100327286	All Organisms → cellular organisms → Bacteria	1351	Open in IMG/M
3300006844\|Ga0075428_101035417	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	868	Open in IMG/M
3300006854\|Ga0075425_101596994	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	735	Open in IMG/M
3300006876\|Ga0079217_10100126	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1301	Open in IMG/M
3300006876\|Ga0079217_10837721	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	645	Open in IMG/M
3300006881\|Ga0068865_100410547	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1111	Open in IMG/M
3300006894\|Ga0079215_10513560	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	752	Open in IMG/M
3300006894\|Ga0079215_10651332	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	700	Open in IMG/M
3300006894\|Ga0079215_11349440	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	554	Open in IMG/M
3300006894\|Ga0079215_11552565	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	524	Open in IMG/M
3300007004\|Ga0079218_10146938	All Organisms → cellular organisms → Bacteria	1714	Open in IMG/M
3300007004\|Ga0079218_10251501	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1395	Open in IMG/M
3300007004\|Ga0079218_11699347	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	699	Open in IMG/M
3300007004\|Ga0079218_12999156	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	568	Open in IMG/M
3300009053\|Ga0105095_10008988	All Organisms → cellular organisms → Bacteria → Proteobacteria	5392	Open in IMG/M
3300009053\|Ga0105095_10248962	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	975	Open in IMG/M
3300009078\|Ga0105106_10006317	All Organisms → cellular organisms → Bacteria → Proteobacteria	8529	Open in IMG/M
3300009078\|Ga0105106_10085941	All Organisms → cellular organisms → Bacteria	2314	Open in IMG/M
3300009094\|Ga0111539_11243287	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	865	Open in IMG/M
3300009162\|Ga0075423_13005190	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	517	Open in IMG/M
3300009609\|Ga0105347_1057683	All Organisms → cellular organisms → Bacteria	1404	Open in IMG/M
3300010399\|Ga0134127_10709136	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1047	Open in IMG/M
3300011420\|Ga0137314_1090998	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	747	Open in IMG/M
3300011422\|Ga0137425_1136331	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	608	Open in IMG/M
3300012907\|Ga0157283_10101622	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	772	Open in IMG/M
3300012909\|Ga0157290_10299125	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	592	Open in IMG/M
3300013306\|Ga0163162_11528893	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	761	Open in IMG/M
3300014326\|Ga0157380_10498675	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1182	Open in IMG/M
3300015371\|Ga0132258_10032110	All Organisms → cellular organisms → Bacteria → Acidobacteria	11746	Open in IMG/M
3300015371\|Ga0132258_11108045	All Organisms → cellular organisms → Bacteria → Acidobacteria	2001	Open in IMG/M
3300015372\|Ga0132256_103368887	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	537	Open in IMG/M
3300015373\|Ga0132257_104179690	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	525	Open in IMG/M
3300015373\|Ga0132257_104195824	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	524	Open in IMG/M
3300015374\|Ga0132255_102692874	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	760	Open in IMG/M
3300018027\|Ga0184605_10449447	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	568	Open in IMG/M
3300018063\|Ga0184637_10073238	All Organisms → cellular organisms → Bacteria	2099	Open in IMG/M
3300018063\|Ga0184637_10253009	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1073	Open in IMG/M
3300018079\|Ga0184627_10391030	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	725	Open in IMG/M
3300018422\|Ga0190265_10236093	All Organisms → cellular organisms → Bacteria	1867	Open in IMG/M
3300018422\|Ga0190265_10320905	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1626	Open in IMG/M
3300018422\|Ga0190265_11358687	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	826	Open in IMG/M
3300018422\|Ga0190265_13499993	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	524	Open in IMG/M
3300018429\|Ga0190272_11128141	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	763	Open in IMG/M
3300018429\|Ga0190272_12217948	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	589	Open in IMG/M
3300018432\|Ga0190275_10123924	All Organisms → cellular organisms → Bacteria	2336	Open in IMG/M
3300018469\|Ga0190270_10016699	All Organisms → cellular organisms → Bacteria	4395	Open in IMG/M
3300018469\|Ga0190270_10256809	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1525	Open in IMG/M
3300018469\|Ga0190270_10568193	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	1098	Open in IMG/M
3300018469\|Ga0190270_12128644	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	621	Open in IMG/M
3300018481\|Ga0190271_10091155	All Organisms → cellular organisms → Bacteria	2772	Open in IMG/M
3300018920\|Ga0190273_10745389	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	768	Open in IMG/M
3300019362\|Ga0173479_10035379	All Organisms → cellular organisms → Bacteria	1545	Open in IMG/M
3300019362\|Ga0173479_10417082	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	653	Open in IMG/M
3300019377\|Ga0190264_12216877	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	512	Open in IMG/M
3300020020\|Ga0193738_1023794	All Organisms → cellular organisms → Bacteria	1922	Open in IMG/M
3300020020\|Ga0193738_1067826	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1055	Open in IMG/M
3300021339\|Ga0193706_1133106	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	677	Open in IMG/M
3300022756\|Ga0222622_11118000	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	580	Open in IMG/M
3300023263\|Ga0247800_1068441	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	676	Open in IMG/M
3300025901\|Ga0207688_10024740	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3294	Open in IMG/M
3300025907\|Ga0207645_10553542	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	780	Open in IMG/M
3300025925\|Ga0207650_10226439	All Organisms → cellular organisms → Bacteria → Acidobacteria	1507	Open in IMG/M
3300025926\|Ga0207659_10655389	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	897	Open in IMG/M
3300025926\|Ga0207659_11588051	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	558	Open in IMG/M
3300027513\|Ga0208685_1067100	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	773	Open in IMG/M
3300027731\|Ga0209592_1050006	All Organisms → cellular organisms → Bacteria → Proteobacteria	1566	Open in IMG/M
3300027818\|Ga0209706_10060933	All Organisms → cellular organisms → Bacteria	1896	Open in IMG/M
3300027876\|Ga0209974_10060339	All Organisms → cellular organisms → Bacteria → Acidobacteria	1283	Open in IMG/M
3300027886\|Ga0209486_10136440	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1338	Open in IMG/M
3300027886\|Ga0209486_10494217	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	759	Open in IMG/M
3300027979\|Ga0209705_10023611	All Organisms → cellular organisms → Bacteria → Proteobacteria	3394	Open in IMG/M
3300028768\|Ga0307280_10360236	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	538	Open in IMG/M
3300028824\|Ga0307310_10637753	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	544	Open in IMG/M
3300031548\|Ga0307408_100159299	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1791	Open in IMG/M
3300031731\|Ga0307405_10366462	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1117	Open in IMG/M
3300031858\|Ga0310892_10087921	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1666	Open in IMG/M
3300031858\|Ga0310892_10163570	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1304	Open in IMG/M
3300031943\|Ga0310885_10304680	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	824	Open in IMG/M
3300031995\|Ga0307409_102497789	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	545	Open in IMG/M
3300032075\|Ga0310890_10166990	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1475	Open in IMG/M
3300032075\|Ga0310890_10519799	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	908	Open in IMG/M
3300032122\|Ga0310895_10476747	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300032211\|Ga0310896_10617070	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	607	Open in IMG/M
3300033811\|Ga0364924_012902	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1576	Open in IMG/M
3300034113\|Ga0364937_032487	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	917	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	70.80%
Host-Associated	Host-Associated	29.20%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	56.64%
Plants	Host-Associated → Plants	29.20%
Aquatic	Environmental → Aquatic	14.16%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	54.87%
Rhizoplane	Host-Associated → Plants → Rhizoplane	14.16%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.16%
Sediment	Environmental → Aquatic → Sediment	7.96%
Freshwater	Environmental → Aquatic → Freshwater	6.19%
Floodplain	Environmental → Terrestrial → Floodplain	1.77%
Roots	Host-Associated → Plants → Roots	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	52.21%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.08%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.08%
Sediment	Environmental → Aquatic → Freshwater → Sediment	6.19%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	5.31%
Loam	Environmental → Terrestrial → Soil → Loam	2.65%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.77%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.24%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	21.24%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.08%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.08%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	6.19%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	6.19%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	5.31%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.54%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.77%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.77%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.89%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	20.35%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	10.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	7.96%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	6.19%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	6.19%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	5.31%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.42%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	3.54%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.54%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.54%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	3.54%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.65%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	1.77%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.77%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.89%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.89%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.89%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003267	Sugarcane bulk soil Sample L1	Environmental	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009053	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009078	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009609	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011420	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT199_2	Environmental	Open in IMG/M
3300011422	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT640_2	Environmental	Open in IMG/M
3300012907	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1	Environmental	Open in IMG/M
3300012909	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S149-409B-1	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018079	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300020020	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a1	Environmental	Open in IMG/M
3300021339	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c1	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300023263	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S092-311B-6	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027513	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890 (SPAdes)	Environmental	Open in IMG/M
3300027731	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027818	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300027876	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300027979	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental	Open in IMG/M
3300033811	Sediment microbial communities from East River floodplain, Colorado, United States - 28_j17	Environmental	Open in IMG/M
3300034113	Sediment microbial communities from East River floodplain, Colorado, United States - 7_s17	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F24TB_169382622	3300000550	Soil	VRVETEMTFDISGRVVRWPDGSDGIIQQEDFTXXXXXGSRQAYVVRLRIKREAKPDITGGLRFTGAAHNQMPGRNDEEKANAVALKLVSWIALHGLQDGFFFRIEANDLGIEVVEA*
JGI10216J12902_1013544372	3300000956	Soil	HQEDFSQDQSAASRRAYVARLRIKRESKPDITGGLRFTGEAHNRMPGRNDAEKANAVALKLVSWIALHGLEDGFFFRVEADDLGIELVEA*
JGI10216J12902_1034824022	3300000956	Soil	MTFDISGRAVRWPDGSDGIIQQEDFTLDHGAGSRQAYVVRLRIKREAKPDITGGLRFTAASHNQMPGRNDEEKANAVALKLVSWIALHGLQDGFFFRIEANDLGIEVVEA*
JGI10216J12902_1065583422	3300000956	Soil	MTFDISGRVVRWPDGSDGVIQQEDFTLDQTSAGSRQAYVVRLRIKREAKPDITGGLRFTGASHHQMPGRNDEEKAYAVALKLVSWIALHGLEDGFFFRIEADDHGIEVVEA*
JGI10216J12902_1118723712	3300000956	Soil	MTFDITGKVIRWPDGSDGTIRQETFEQDSTSSGRQAYIARLRIERADASNISGGLRFTAKAHDQMPGRNDEEKANAVALKIVSWVAQHGLKDGFFFRVDADDMGIELFEA*
soilL1_100799432	3300003267	Sugarcane Root And Bulk Soil	MNFDITGSVLRWPDGSDGTVQQEEFGPDHSVGRRDAYVARLRVKRGNKPDITGGLRFTGAAHGRMPGRDDSEKAHAVALKLRAWVAQHGLADGFFFRVEADDNSGIEVFEA*
soilL2_100678742	3300003319	Sugarcane Root And Bulk Soil	MTFDISGRVVRWPNGSHGTIRQSSFDRDPGTSRPAYVARLRVERPGEPDVAGALRFTAEAHNRMPGRNDEEKANAVALKIVSWVALHGLTDGFFFRVDAGDSGIEVFEA*
Ga0062593_1017878261	3300004114	Soil	MTFDITGRSVRWPDGSDGTIQQEAFDGDGSAGGRQAFVARLRVRREGKPDITGGLRFTAAAHGRMPGRDDAEKANAVALKVVSWVAQHGLTDGFFFRVDADDSGVQIFEA*
Ga0062589_1012238282	3300004156	Soil	MNFDISGRMLRWPDGSDGVIHQESFDREQSTGSRQAYVVRLRVDRAGAHPITGALRFTAAAHQHMPGRNDAEKADAVALKIHSWVAQHGLTDGFFFRVEADDSGIEVLEA*
Ga0062590_1005283461	3300004157	Soil	MTFDITGRAVRWPDGSDGTIQQEAFDGDGSAGGRQAFVARLRVRREGKPDITGGLRFTAAAHGRMPGRDDAEKANAVALKVVSWVAQHGLTDGFFFRVDADDSGVQIFEA*
Ga0062590_1022283272	3300004157	Soil	GVRAETEMTFDISGRVVRWPDGSDGIIQQEDFTLDHGAGSRQAYVVRLRIKREAKPDITGGLRFTGAAHNQMPGRNDEEKANAVALKLVSWIALHGLQDGFFFRIEANDLGIEVVEA*
Ga0063356_1000556862	3300004463	Arabidopsis Thaliana Rhizosphere	MTFDISGRVLRWPDGSDGTIMQESFDRDSSSGTGSRLAYVARFRVDRAGGHPISGALRFTAAAHGRMPGRNDEEKAEAVALKIVTWVALNGLSDGFFFRVEADDSGIEVSEA*
Ga0063356_1004896932	3300004463	Arabidopsis Thaliana Rhizosphere	MRDGAGIETEDRERGNTIYTTAMTFDISGRSVRWPDGSDGVIQQEGFDREGSGSRHAYVVRFRVERTGAPHITGGLRFTAAAHERMPGRNDEEKAEALALKIVSWVAQHGLTDGFFFRVDANDSGIEVLEA*
Ga0063356_1012366573	3300004463	Arabidopsis Thaliana Rhizosphere	GAYGTIRQSSFDRDPGTSRQAYVARLRVERPGEQDIAGAVRFTADAHRRMPGRNDEEKANAVALKIVSWVALHGLTDGFFFRVDAGDSGIEIFEA*
Ga0063356_1045943211	3300004463	Arabidopsis Thaliana Rhizosphere	MKTSTRAFDISGRMIRWPDGSDGTIRQETFEQDSTTTGRQAYIARLRIERADAPDISGGLRFTAKAHDQMPGRNDEEKANAVALKIVSWVAQHGLKDGFFFRVDADDMGIELFE
Ga0063356_1059828521	3300004463	Arabidopsis Thaliana Rhizosphere	PMTFDISGCILRWPDGSDGTIYQESLEREKTSSSRQAFVVRLRVDRAGTNPITGALRFTAAAHERMPGRNDREKVEAVALKIHSWVAQHGLTDGFFFRVEADDMGIEVLEA*
Ga0062595_1022782772	3300004479	Soil	MTFDISGCILRWPDGSDGTIYQESLEREKTSSSRQAFVVRLRVDRAGTNPITGALRFTAAAHERMPGRNDREKVEAVALKIHSWVAQHGLTDGFFFRVEADDMGIEVLEA*
Ga0062592_1000277392	3300004480	Soil	MTFDISGRSVRWPDGSDGVIQQEGFDREGSGSRHAYVVRFRVERTGAPHITGGLRFTAAAHERMPGRNDEEKAEALALKIVSWVAQHGLTDGFFFRVDANDSGIEVLEA*
Ga0062592_1001933572	3300004480	Soil	MKTSTRAFDISGRMIRWPDGSDGTIRQETFEQDSTTTGRQAYIARLRIERADAPDISGGLRFTAKAHDQMPGRNDEEKANAVALKIVSWVAQHGLKDGFFFRVDADDMGIELFEA*
Ga0062591_1003352192	3300004643	Soil	MTFDISGRAIRWPDGSDGTIRQETFEQDSSSGGRQAYIARLRIQRADAPDISGGLRFTAKAHDLMPGRNDEEKANAVALKIVSWVAQHGLKDGFFFRVDANDMGIELFEA*
Ga0062591_1023626611	3300004643	Soil	MNFDISGRMLRWPDGSDGVIHQESFDREQSTGSRQAYVVRLRVDRAGAHPITGALRFTAAAHQHMPGRNDAEKADAVALKIHSWVAQHGLTDGFFFRVEAD
Ga0065712_105031252	3300005290	Miscanthus Rhizosphere	MTFDISGRVVRWPDGSDGIIQQEDFTQDQSAASRRAYVARLRIKREAKPDITGGLRFTAEAHNRMPGRNDAEKANAVALKLVSRIALHGLEDGFFFRVEADDLGIEVVEA*
Ga0070690_1009047111	3300005330	Switchgrass Rhizosphere	MTFDITGRSVRWPDGSDGTIQQEAFDGDRSAGGRQAFVARLRVRREGKPDITGGLRFTAAAHGRMPGRDDAEKANAVALKVVSWVAQHGLTDGFFFRVDADDSGVQIFEA*
Ga0070670_1002380953	3300005331	Switchgrass Rhizosphere	VGCLALERKLVVMTFDITGRSVRWPDGSDGTIQQEAFDGDGSAGGRQAFVARLRVRREGKPDITGGLRFTAAAHGRMPGRDDAEKANAVALKVVSWVAQHGLTDGFFFRVDADDSGVQIFEA*
Ga0070674_1014476812	3300005356	Miscanthus Rhizosphere	MTFDITGRSVRWPDGSDGTIQQEAFDGDRSAGGRQAFVARLRVRREGKPDITGGLRFTAAAHGRMPGRDDAEKANAVALKVVSWVAQHGLTDGFFF
Ga0070662_1012079142	3300005457	Corn Rhizosphere	RSVRWPDGSDGTIQQEAFDGDRSAGGRQAFVARLRVRREGKPDITGGLRFTAAAHGRMPGRDDAEKANAVALKVVSWVAQHGLTDGFFFRVDADDSGVQIFEA*
Ga0070704_1005197462	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MTFDISGCILRWPDGSDGTIYQESLEREKTSSSRQAFVVRLRVDRAGTNPITGALRFTAAAYERMPGRNDREKVEAVALKIHSWVAQHGLTDGFFFRLEADDMGIEVLEA*
Ga0068859_1009763021	3300005617	Switchgrass Rhizosphere	MTFDISGCMLRWPDGSDGTIYQESIEREKTSSSRQAYVVRLRVDRSGTNPISGGLRFTAAAHERMPGRNDMEKVEAVALKIHSWVAQHGLTDGFFFRLEADDMGIEVLEA
Ga0068871_1003272861	3300006358	Miscanthus Rhizosphere	MAMTFDITGRVLRWPDGSDGTIHQEAFDRDGSGGGRHAFVARLNVRRDGKPDLTGGLRFTAEAHDRMPGRDDAEKANAVALKVVSWVAQHGLTDGFFFRVDADDSGVQIFEA*
Ga0075428_1010354171	3300006844	Populus Rhizosphere	MTFDISGRVVRWPNGSFGTIRQSSFERDPGTGRQAYVARLRVERPGEPDIAGALRFTAAAHNRMPGRNDEEKANAVALKIVSWVALHGLTDGFFFRVDAGDSGIEMFEA*
Ga0075425_1015969941	3300006854	Populus Rhizosphere	DGSDGTIQQEAFDGDRSAGGRQAFVARLRVRREGKPDITGGLRFTAAAHGRMPGRDDAEKANAVALKVVSWVAQHGLTDGFFFRVDADDSGVQIFEA*
Ga0079217_101001262	3300006876	Agricultural Soil	MTFDISGRSVRWPDGSNGTIHQEDFSQDQSAASRHAYVARLRIRRDAKPDITGGLRFTGDAHNRMPGRNDAEKANAVALKLVSWIARHGLED
Ga0079217_108377212	3300006876	Agricultural Soil	MTFDISGRVVRWPDGSNGTIEQEDFAQDQSVTGRHAFVVRLRVRRDAKADITGGLRFTGDAHNRMPGRNDAEKANAVALKLVSWVARNGLEDGFFFRVEVDDLGIEIVEA*
Ga0068865_1004105471	3300006881	Miscanthus Rhizosphere	MTFDVTGRSVRWPDGSDGTIQQEAFDGDGSAGGRQAFVARLRVRREGKPDITGGLRFTAAAHGRMPGRDDAEKANAVALKVVSWVAQHGLTDGFFFRVDADDSGVQIFEA*
Ga0079215_105135601	3300006894	Agricultural Soil	MTFDISGRVVRWPDGSNGTIEQEDFAQDQSATSRHAFVVRLRIRRNAKADITGGLRFTGEAHKRMPGRNDAEKANAVALKLVSWVARNGLADGFFFRVEADDLGIEIVEA*
Ga0079215_106513322	3300006894	Agricultural Soil	SGRVSEVAVIREPGLETEDGEEGNTIYTTAMTFDISGRSVRWPDGSDGTIQQEGFDREGSGSRHAYVVRFRVERTGAPHITGGLRFTAAAHERMPGRNDEEKADALALKIVSWVAQHGLTDGFFFRVDANDSGIEMSEA*
Ga0079215_113494402	3300006894	Agricultural Soil	MTFDMSGRVVRWPDGSDGVIHQEDFTQDQSGGGRRAYVARLRIKRQAKPDITGGLRFTGEAHTRMPGRNDIEKANAVALKLVSWVARHGLEDGFFFRVEADDLGIEIVEA*
Ga0079215_115525652	3300006894	Agricultural Soil	MEFDISGRMVRWPDGSDGVIHQENFTQDQSGGNRRAYVARLRIKRQTKPDITGGLRFTGEAHNRMPGRNDAEKANAVALKLVSWIARHGLEDGFFFRVEADDLGIEVVEA*
Ga0079218_101469382	3300007004	Agricultural Soil	MTFDISGRVVRWPNGTDGVIQQEDFTLDQSASSRQAYVARLRIKREAKPDITGGLRFTGAAHNRMPGRNDEEKAHAVGLKLVSWIAVHGLEDGFFFRVEADDLGIEIVEA*
Ga0079218_102515011	3300007004	Agricultural Soil	MTFDISGRSVRWPDGSDGTIQQEGFDREGSGSRHAYVVRFRVERTGAPHITGGLRFTAAAHERMPGRNDEEKADALALKIVSWVAQHGLTDGFFFRVDANDS
Ga0079218_116993471	3300007004	Agricultural Soil	MVRSQLAPKLVASRLKAGHYAKLGVENVVYTTAMTFDISGRSVRWPDGSDGVIQQEGFDREGSGSRHAYVVRFRVERTGAPHITGGLRFTAAAHERMPGRNDEEKAEALALKIVSWVAQHGLTDGFFFRVDANDSGIEMSEA*
Ga0079218_129991562	3300007004	Agricultural Soil	MTFDISGRVVRWPNGSDGIIQQEDFTLDQSAGSRQAYVARLRIKREAKPDITGGLRFTGAAHNRMPGRNDEEKANAVALKLVSWIALHGLEDGFFFRVEADDLGIEVVEA*
Ga0105095_100089883	3300009053	Freshwater Sediment	MTFDISGRILRWPDGSDGTIQQESFDRDPTSGSRHAYVARFRVERAGAPPISGGLRFTAAAHHRMPGRNDEEKAHGVALKIVGWVAQHGLTDGFFFRVDADENGVIEISEA*
Ga0105095_102489622	3300009053	Freshwater Sediment	WPDGTDGTIHQESFERDPKSGSGSRYAYVARFRVDHAGAPPISGGLRFTAAAYDRMPGRNDAEKANAVALKIVGWVAQNGLTDGFFFRVDADENGVIEVSEA*
Ga0105106_100063178	3300009078	Freshwater Sediment	MTFDISGRILRWPDGSDGTIQQESFDRDPTSGSRHAYVARFRVERAGTPPISGGLRFTAAAHDRMPGRNDEEKAHGVALKIVGWVAQHGLTDGFFFRVDADENGVIEISEA*
Ga0105106_100859413	3300009078	Freshwater Sediment	MTFDISGRILRWPDGTDGTIHQESFERDPKSGSGSRYAYVARFRVDHAGAPPISGGLRFTAAAYDRMPGRNDAEKANAVALKIVGWVAQNGLTDGFFFRVDADENGVIEVSEA*
Ga0111539_112432872	3300009094	Populus Rhizosphere	MHFDISGRVIRWPDGSDGTIRQESFDQDKTSSSGRHAYIVRLRIERGDAPDITGGLRFTAKAHERMPGRNDEEKANAVALKIVSWVALHGLKDGFFFRVDVDENNFGIELFEA*
Ga0075423_130051901	3300009162	Populus Rhizosphere	MTFDITGRSVRWPDGSDGTLQQEAFDGDRSAGGRQAFVARLRVRREGKPDITGGLRFTAAAHGRMPGRDDAEKANAVALKVVSWVAQHGLTDGFFFRVDADDSGVQIFEA*
Ga0105347_10576832	3300009609	Soil	MTFDISGRVVRWPDGSDGVIQQEDFTQDQSAASRRAYVARLRIKREAKPDITGALRFTAEAHNRMPGRNDAEKANAVALKLVSRIALHGLDDGFFFRVEADDLGIEVVEA*
Ga0134127_107091362	3300010399	Terrestrial Soil	MTFDISGCMLRWPDGSDGTIYQESIEREKTSSSRQAYVVRLRVDRSGTNPISGGLRFTAAAHERMPGRNDMEKVEAVALKIHSWVAQHGLTDGFFFRLEADDMGIEVLEA*
Ga0137314_10909981	3300011420	Soil	MTFDISGRVVRWPDGSDGVIQQEDFTQDQSAASRRAYVARLRIKREAKPDITGALRFTAEAHNRMPGRNDAEKANAVALKLVSWIALHGLQDGFFFRVEADDLGIEVVEA*
Ga0137425_11363311	3300011422	Soil	MTFDISGRVVRWPDGSDGVIQQEDFTQDQSAASRRAYVARLRIKREAKPDITGALRFTAEAHNRMPGRNDAEKANAVALKLVSRIALHGL
Ga0157283_101016222	3300012907	Soil	MTFDISGCILRWPDGSDGTIYQESLEREKTSSSRQAFVVRLRVDRAGTNPITGALRFTAAAHERMPGRNDREKVEAVALKIHSWVAQHGL
Ga0157290_102991252	3300012909	Soil	TFDISGCILRWPDGSDGTIYQESLEREKTSSSRQAFVVRLRVDRAGTNPITGALRFTAAAHERMPGRNDREKVEAVALKIHSWVAQHGLTDGFFFRVEADDMGIEVLEA*
Ga0163162_115288931	3300013306	Switchgrass Rhizosphere	FDISGCILRWPDGSDGTIYQESLEREKTSSSRQAFVVRLRVDRAGTNPITGALRFTAAAHERMPGRNDREKVEAVALKIHSWVAQHGLTDGFFFRVEADDMGIEVLEA*
Ga0157380_104986751	3300014326	Switchgrass Rhizosphere	MTFDISSRVVRWPDGSDGIIQQEDFTLDHGAGSRQAYVVRLRIKREAKPDITGGLRFTGAAHNQMPGRNDEEKANAVALKLVSWIALHGLQDGFFFRIEANDLGIEVVEA*
Ga0132258_100321105	3300015371	Arabidopsis Rhizosphere	MTFDISGRVLRWPDGSDGTIMQESFDRDSSSGTGSRLAYVARFRVDRAGGHPISGALRFTAAAHGRMPGRNDEEKAEAVALKIVTWVALNGLSDGFFFRVEADDMGIEVSEA*
Ga0132258_111080452	3300015371	Arabidopsis Rhizosphere	MTFDITGRAVRWPDGSDGIIQQEAFDGDGSAGGRQAFVARLRVRREGKPDITGGLRFTAAAHDKMPGRDDAEKANAVALKVVSWVAQHGLTDGFFFRVDADDSGVQIFEA*
Ga0132256_1033688871	3300015372	Arabidopsis Rhizosphere	MTFDITGRAVRWPDGSDGTIQQEAFDRDGSGGRHAFVARLRVRRDGKPDLTGGLRFTAEAHDRMPGRDDTQKANAGALKVVSWVAQHGLTDGFFFRVDADDSGVQ
Ga0132257_1041796901	3300015373	Arabidopsis Rhizosphere	MTFDISGRVLRWPDGSDGTIMQESFDRDSSSGTGSRLAYVARFRVDRAGGHPISGALRFTAAAHGRMPGRNDEEKAEAVALKIVTWVALNGLSDGF
Ga0132257_1041958241	3300015373	Arabidopsis Rhizosphere	MTFDITGRTVRWPDGSDGIIQQEAFDGDGSAGGRQAFVARLRVRREGKPDITGGLRFTAAAHGRMPGRDDAEKANAVALKVVSWVAQHGLTDGFFFRVDADDSGVQIFEA*
Ga0132255_1026928742	3300015374	Arabidopsis Rhizosphere	MTFDITGRAVRWPDGSDGTIQQEAFDRDGSGGRHAFVARLRVGRDGKPDLTGGLRFTAEAHDRMPGRDDTQKANAVALKVVSWVAQHGLTDGFFFRVDAD
Ga0184605_104494471	3300018027	Groundwater Sediment	MTFDISGRVVRWPDGSDGTIQQEAFDRDASGGGRHAFVARLSVRRVGKPDLTGGLRFTAEAHDRMPGRDDAEKANAVALKVVSWVAQHGLTDGFFFRVDADDTGVQVHEA
Ga0184637_100732382	3300018063	Groundwater Sediment	MTFDISGRVVRWPDGSDGTIQQEDFTQDQSAGSRHAYVARLRIKREAKPDITGGLRFTGEAHNRMPGRNDAEKANAVALKLVSRIALHGLADGFFFRVEADDLGIEVVEA
Ga0184637_102530092	3300018063	Groundwater Sediment	MVALETIMTFDISGTAVRWPDGTEGIIKQESFDRDRGRGGRHAYVVHLRVKRDGKPEISGALRFTFEAHERMPGRDNAEKANAVGRKLVSWVAENGLKDGFFFRVDADDFGVQVLEASD
Ga0184627_103910301	3300018079	Groundwater Sediment	LPMVALETIMTFDISGTAVRWPDGTEGIIRQESFDRDRGRGGRHAYVVHLRVKRDGKPEISGALRFTFEAHERMPGRDNAEKANAVGRKLVSWVAENGLKDGFFFRVDADDFGVQVVEAS
Ga0190265_102360932	3300018422	Soil	MTFDISGRVVRWPDGSDGIVQQEDFTLDQGAGSRQAYVARLRIRREAKPDITGALRFTGASHNRMPGRNDEEKANAVALKLVSWIALHGLQDGFFFRVEADDLGIEVVEA
Ga0190265_103209052	3300018422	Soil	MTFDISGRSVRWPDGSDGTIQQEGFDREGSGSRHAYVVRFRVERTGAPRITGGLRFTAAAHERMPGRNDEEKADALALKIVSWVAQHGLTDGFFFRVDANDSGIEMSEA
Ga0190265_113586871	3300018422	Soil	MNFDITGKVLRWPDGSEGTVHQEAFDRDKGGRHAYVARFLVKREAKPDITGGLRFTAEAHDRMPGRNDAEKANAVALKLVSWVAQHGLTDGFFFRVDANDFGIEVSEA
Ga0190265_134999932	3300018422	Soil	MTFDITGRMLRWPDGSDGTIHQESFDREKSTGSRQAFVVRVRVERAGSQPITGGLRFTAAAHERMPGRNDEEKAEAVALKIHSWVAQHGLTDGFFFRVEADDMGIEVLEA
Ga0190272_111281412	3300018429	Soil	MTFDISGRVVRWPDGSDGIVQQEDFTLDQSAGSRQAYVARLRIRREAKPDITGALRFTGASHNRMPGRNDEEKANAVALKLVSWIALHGLQDGFFFRVEADDLGIEVVEA
Ga0190272_122179481	3300018429	Soil	MTFDISRRSVRWPDGSDGTIQQESFDREGSGSRYAYVVRFRVERAGAPHITGGLRFTAAAHERMPGRNDEEKADALALKIVSWVAQHGLTDGFFFRVDANDTGIEVSEA
Ga0190275_101239243	3300018432	Soil	MTFDISGRSVRWPDGSDGTIQQEGFDREGSSSRHAYVVRFRVERTGAPPITGGLRFTAAAHERMPGRNDEEKAEALALKIVSWVAQHGLTDGFFFRVDANDSGIEMSEA
Ga0190270_100166993	3300018469	Soil	MIFDISGRLVRWPDGSDGTIHQEDFAQDQSAASRRAYVARLRIKRDAKPEITGALRFTGEAHARMPGRNDAEKANAVALKLVSWIALHGLDDGFFFRVEADDFGIEIVEA
Ga0190270_102568091	3300018469	Soil	NTIYTTAMTFDISGRSVRWPNGSDGIIQQEGFDREGSGSRHAYVVRFRVERTGAPHITGGLRFTAAAHERMPGRNDEEKAEALALKIVSWVAQHGLTDGFFFRVDANDSGIEMSEA
Ga0190270_105681932	3300018469	Soil	MTFDISGRLVRWPDGSDGIVQQEEFTLDRSAGSRQAYVARLRIRREAKPDITGALRFTGASHNRMPGRNDEEKANAVALKLVSWIALHGLQDGFFFRVEADDLGIEVVEA
Ga0190270_121286441	3300018469	Soil	FTIYTTAMTFDISSRSVRWPDGSDGTIQQESFDREGSGSRHAYVVRFRVERAGAPHITGGLRFTTAAHERMPGRNDEEKAEALALKIVSWVAQHGLTDGFFFRVDANDTGIEVLEA
Ga0190271_100911552	3300018481	Soil	MTFDISGRLVRWPDGSDGTIHQEDFAQDQSAASRRAYVARLRIKRDAKPDITGALRFTGEAHARMPGRNDAEKANAVALKLVSWIALHGLDDGFFFRVEADDLGIEIVEA
Ga0190273_107453891	3300018920	Soil	SGRSVRWPDGSDGTIQQEGFDREGSGSRHAYVVRFRVERAGVPHITGGLRFTAAAHERMPGRNDEEKAEALALKIVSWVAQHGLTDGFFFRVDANDSGIEVLEA
Ga0173479_100353792	3300019362	Soil	MTFDISGCILRWPDGSDGTIYQESLEREKTSSSRQAFVVRLRVDRAGTNPITGALRFTAAAHERMPGRNDREKVEAVALKIHSWVAQHGLTDGFFFRVEADDMGIEVLEA
Ga0173479_104170821	3300019362	Soil	MTFDITGRSVRWPDGSDGTIQQEAFDGDGSAGGRQAFVARLRVRREGKPDITGGLRFTAAAHGRMPGRDDAEKANAVALKVVSWVAQHGLTDGFFFRVDADDSGVQIFEA
Ga0190264_122168771	3300019377	Soil	MTFDISGRSVRWPDGSDGIIQQEGFDREGSGSRHAYVVRFRVERTGAPHITGGLRFTAAAHERMPGRNEEEKADALALKIVSWVAQHGLTDGF
Ga0193738_10237942	3300020020	Soil	MIFDISGRLVRWPDGSDGTIHQEDFAQDQSAASRRAYVARLRIKRDAKPEITGALRFTGEAHARMPGRNDAEKANAVALKLVSWIALHGLDDGFFFRVEADDLGIEIVEA
Ga0193738_10678262	3300020020	Soil	MTFDISGRAVRWPDGSDGVIQQEDFTLDQKSSGSRQAYVVRLRIKREAKPDITGGLRFTGASHNQMPGRNDEEKAYAVALKLVSWIALHGLEDGFFFRIEADDHGIDVVEA
Ga0193706_11331061	3300021339	Soil	MTFDISGRSVRWPDGSDGTIKQESFDREGSGSRHAYVVRFRVERAGAPRITGGLRFTAAAHERMPGRNDEEKAEALALKIVSWVAQHGLTDGFFFRVDANDAGIEVSEA
Ga0222622_111180001	3300022756	Groundwater Sediment	MTFDITGRAVRWPDGSDGTIQQEAFDGDGSSGGRQAFVARLRVRRDGKPDITGGLRFTAAAHGRMPGRDDAEKANAVALKVVSWVAQHGLTDGFFFRVDADDSGVQIFE
Ga0247800_10684411	3300023263	Soil	FRLQPMTFDISGCILRWPDGSDGTIYQESLEREKTSSSRQAFVVRLRVDRAGTNPITGALRFTAAAHERMPGRNDREKVEAVALKIHSWVAQHGLTDGFFFRVEADDMGIEVLEA
Ga0207688_100247402	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MTFDITGRSVRWPDGSDGTIQQEAFDGDRSAGGRQAFVARLRVRREGKPDITGGLRFTAAAHGRMPGRDDAEKANAVALKVVSWVAQHGLTDGFFFRVDADDSGVQIFEA
Ga0207645_105535421	3300025907	Miscanthus Rhizosphere	MTFDITGRAVRWPDGSDGTIQQEAFDGDGSAGGRQAFVARLRVRRDGKPDITGGLRFTAAAHDKMPGRDDAEKANAVALKVVSWVAQHGLTDGFFFRVDADDSGVQIFEA
Ga0207650_102264393	3300025925	Switchgrass Rhizosphere	GSDGTIQQEAFDGDGSAGGRQAFVARLRVRREGKPDITGGLRFTAAAHGRMPGRDDAEKANAVALKVVSWVAQHGLTDGFFFRVDADDSGVQIFEA
Ga0207659_106553891	3300025926	Miscanthus Rhizosphere	MTFDITGRSVRWPDGSDGTIQQEAFDGDRSAGGRQAFVARLRVRREGKPDITGGLRFTAAAHGRMPGRDDAEKANAVALKVVSWVAQHGLT
Ga0207659_115880511	3300025926	Miscanthus Rhizosphere	YNLQPMTFDISGCILRWPDGSDGTIYQESLEREKTSSSRQAFVVRLRVDRAGTNPITGALRFTAAAHERMPGRNDREKVEAVALKIHSWVAQHGLTDGFFFRVEADDMGIEVLEA
Ga0208685_10671001	3300027513	Soil	SCRHSQLRGIRAETAMTFDISGRVVRWPDGSDGVIQQEDFTQDQSAASRRAYVARLRIKREAKPDITGALRFTAEAHNRMPGRNDAEKANAVALKLVSRIALHGLDDGFFFRVEADDLGIEVVEA
Ga0209592_10500062	3300027731	Freshwater Sediment	MTFDISGRILRWPDGSDGTIQQESFDRDPTSGSRHAYVARFRVERAGAPPISGGLRFTAAAHHRMPGRNDEEKAHGVALKIVGWVAQHGLTDGFFFRVDADENGVIEISEA
Ga0209706_100609332	3300027818	Freshwater Sediment	MTFDISGRILRWPDGTDGTIHQESFERDPKSGSGSRYAYVARFRVDHAGAPPISGGLRFTAAAYDRMPGRNDAEKANAVALKIVGWVAQNGLTDGFFFRVDADENGVIEVSEA
Ga0209974_100603392	3300027876	Arabidopsis Thaliana Rhizosphere	MTFDISGKVIRWPDGSDGTIRQETFDQDSSISGRHAYIARLRIERADGPDISGGLRFTAKAHGQMPGRNDEEKANAVALKIVSWVAQHGLKDGFFFRVDADDMGIELFEA
Ga0209486_101364402	3300027886	Agricultural Soil	MTFDISGRSVRWPDGSDGTIQQEGFDREGSGSRHAYVVRFRVERTGAPHITGGLRFTAAAHERMPGRNDEEKADALALKIVSWVAQHGLTDGFFFRVDANDSGIEMSEA
Ga0209486_104942172	3300027886	Agricultural Soil	MVRSQLAPKLVASRLKAGHYAKLGVENVVYTTAMTFDISGRSVRWPDGSDGVIQQEGFDREGSGSRHAYVVRFRVERTGAPHITGGLRFTAAAHERMPGRNDEEKAEALALKIVSWVAQHGLTDGFFFRVDANDSGIEMSEA
Ga0209705_100236112	3300027979	Freshwater Sediment	MTFDISGRILRWPDGSDGTIQQESFDRDPTSGSRHAYVARFRVERAGTPPISGGLRFTAAAHDRMPGRNDEEKAHGVALKIVGWVAQHGLTDGFFFRVDADENGVIEISEA
Ga0307280_103602362	3300028768	Soil	MTFDITGRVLRWPDGSDGTIHQETFDRDGSGGGRHAFVARLSVRRDGKPDLTGGLRFTADAHDRMPGRDDAEKANAVALKVVSWVAQHG
Ga0307310_106377531	3300028824	Soil	MTFDITGRVLRWPDGSDGTIHQETFDRDGSGGGRHAFVARLSVRRDGKPDLTGGLRFTADAHDRMPGRDDAEKANAVALKVVSWVAQHGLTDGFFFRVDADDSGIQIF
Ga0307408_1001592991	3300031548	Rhizosphere	MTFDISGRAVRWPDGSDGTIQQEDFTQDQSAASRRAYVARLRIKRESKSDITGGLRFTGDAHGRMPGRNDTEKANAVALKLVSWIALNGLEDGFFFRVDAGDLGIELVEA
Ga0307405_103664622	3300031731	Rhizosphere	LMTFDISGRAVRWPDGSDGTIQQEDFTQDQSAASRRAYVARLRIKRESKSDITGGLRFTGDAHGRMPGRNDTEKANAVALKLVSWISLNGLEDGFFFRVDAGDLGIELVEA
Ga0310892_100879211	3300031858	Soil	MTFDISGCILRWPDGSDGTIYQESLEREKTSSSRQAFVVRLRVDRAGTNPITGALRFTAAAHERMPGRNDREKVEAVALKIHSWVAQHGLTDGFFFRVEADDMGI
Ga0310892_101635701	3300031858	Soil	VTFDLSGRAIRWPDGSDGTIRQETFEQDSSSSGRQAYIARIRIERADAPDISGGLRFTAKAHERMPGRNDEEKANAVALKIVSWVAQHGLKDGFFFRVDADDVGIELSEA
Ga0310885_103046801	3300031943	Soil	VTFDLSGRAIRWPDGSDGTIRQETFEQDSSSSGRQAYIARIRIERADAPDISGGLRFTAKAHERMPGRNDEEKANAVALKIVSWVAQHGLKDGFFFRVDADDLGIELSEA
Ga0307409_1024977892	3300031995	Rhizosphere	VRWPDGSDGTIQQEDFTQDQSAASRRAYVARLRIKRESKSDITGGLRFTGDAHGRMPGRNDTEKANAVALKLVSWIALNGLEDGFFFRVDAGDLGIELVEA
Ga0310890_101669902	3300032075	Soil	VTFDLSGRAIRWPDGSDGTIRQETFEQDSSSSGRQAYIARIRIERADAPDISGGLRFTAKAHERMPGRNDEEKANAVALKIVSWVAQHGLKDGFFFRVDADDVGIEQSEA
Ga0310890_105197992	3300032075	Soil	MTFDISGRVVRWPDGSDGVIQQEDFTQDQSAASRRAYVARLRIKREAKPDITGALRFTAEAHNRMPGRNDAEKANAVALKLVSRIALHGLDD
Ga0310895_104767472	3300032122	Soil	MTFDISGRTLRWPDGSDGTIHQDGCQSDGRSGRRESFVVRLRVSHAGGTSLNGGLRFTAEAHERMPGRDDAEKANAVALKLVSWVAQHGLTDGFFFRVDADELGVVQISEA
Ga0310896_106170702	3300032211	Soil	MTFDISGRVVRWPDGSDGIIQQEDFTLDHGAGSRQAYVVRLRIKREAKPDITGALRFTAEAHNRMPGRNDAEKANAVALKLVSRIALHGLDDGFFFRVEADDLGIEVVEA
Ga0364924_012902_805_1164	3300033811	Sediment	MVALETIMTFDISGTAVRWPDGTEGIIKQESFDRDRGRGGRHAYVAHLSVKRDGKPEISGALRFTFEAHERMPGRDNAEKANAVGRKLVSWVAENGLKDGFFFRVDADDFGVQVLEASD
Ga0364937_032487_27_359	3300034113	Sediment	MTFDISGRVVRWPDGSDGVIQQEDFTQDQSAASRRAYVARLRIKREAKPDITGALRFTAEAHNRMPGRNDAEKANAVALKLVSRIALHGLDDGFFFRVEADDLGIEVVEA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F082756

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences