Metagenome / Metatranscriptome Family F082641

Basic Information
Family ID	F082641
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	54 residues
Representative Sequence	MKCWREPSLEDILSDPITQAVISADGVDTGELDAMLRRVAHKRRSAQRSAGATA
Number of Associated Samples	100
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	76.11 %
% of genes near scaffold ends (potentially truncated)	30.97 %
% of genes from short scaffolds (< 2000 bps)	79.65 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.50

Most Common Taxonomy
Group	Bacteria (92.035 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands (7.965 % of family members)
Environment Ontology (ENVO)	Unclassified (32.743 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (39.823 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 48.78% β-sheet: 0.00% Coil/Unstructured: 51.22%
Feature Viewer

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Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF00873	ACR_tran	41.59
PF02310	B12-binding	12.39
PF04055	Radical_SAM	9.73
PF13519	VWA_2	3.54
PF13767	DUF4168	2.65
PF00571	CBS	2.65
PF00664	ABC_membrane	0.88
PF07750	GcrA	0.88
PF13533	Biotin_lipoyl_2	0.88
PF03176	MMPL	0.88
PF09864	MliC	0.88
PF00753	Lactamase_B	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG1033	Predicted exporter protein, RND superfamily	General function prediction only [R]	0.88
COG2409	Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily	General function prediction only [R]	0.88
COG5352	Uncharacterized conserved protein	Function unknown [S]	0.88

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	92.04 %
Unclassified	root	N/A	7.96 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	92.04 %
Unclassified	root	N/A	7.96 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	92.04 %
Unclassified	root	N/A	7.96 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	73.45 %
Unclassified	root	N/A	7.96 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	1.77 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	69.03 %
Unclassified	root	N/A	7.96 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1.77 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	24.78 %
Unclassified	root	N/A	7.96 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	4.42 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1.77 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	7.96 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1.77 %
Hyphomicrobiales incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis	0.88 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	0.88 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	7.96 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1.77 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.88 %
Pseudorhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes	0.88 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	7.96 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1.77 %
Pseudorhodoplanes sinuspersici	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	0.88 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.88 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090015\|GPICI_8953971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1380	Open in IMG/M
3300000156\|NODE_c0668733	All Organisms → cellular organisms → Bacteria	2680	Open in IMG/M
3300000891\|JGI10214J12806_13077089	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	831	Open in IMG/M
3300000953\|JGI11615J12901_11117968	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1067	Open in IMG/M
3300001976\|JGI24752J21851_1008849	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1313	Open in IMG/M
3300001990\|JGI24737J22298_10014632	All Organisms → cellular organisms → Bacteria	2546	Open in IMG/M
3300003319\|soilL2_10068373	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1550	Open in IMG/M
3300003324\|soilH2_10294338	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1845	Open in IMG/M
3300003911\|JGI25405J52794_10006035	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2205	Open in IMG/M
3300003994\|Ga0055435_10129382	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	690	Open in IMG/M
3300004024\|Ga0055436_10045647	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1174	Open in IMG/M
3300004062\|Ga0055500_10058896	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	786	Open in IMG/M
3300004114\|Ga0062593_101543265	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	718	Open in IMG/M
3300004145\|Ga0055489_10020113	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1592	Open in IMG/M
3300004156\|Ga0062589_101237734	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	717	Open in IMG/M
3300004157\|Ga0062590_100660452	All Organisms → cellular organisms → Bacteria	933	Open in IMG/M
3300004463\|Ga0063356_103083617	All Organisms → cellular organisms → Bacteria → Proteobacteria	718	Open in IMG/M
3300004463\|Ga0063356_106141087	All Organisms → cellular organisms → Bacteria → Proteobacteria	515	Open in IMG/M
3300004480\|Ga0062592_101726086	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	610	Open in IMG/M
3300004643\|Ga0062591_102085233	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	587	Open in IMG/M
3300005093\|Ga0062594_100052470	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2100	Open in IMG/M
3300005093\|Ga0062594_101347218	All Organisms → cellular organisms → Bacteria	720	Open in IMG/M
3300005103\|Ga0066813_1001875	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	852	Open in IMG/M
3300005162\|Ga0066814_10016487	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	981	Open in IMG/M
3300005162\|Ga0066814_10018748	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	941	Open in IMG/M
3300005168\|Ga0066809_10050288	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	933	Open in IMG/M
3300005183\|Ga0068993_10058137	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1146	Open in IMG/M
3300005276\|Ga0065717_1000133	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2951	Open in IMG/M
3300005280\|Ga0065696_1219476	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	530	Open in IMG/M
3300005329\|Ga0070683_101359142	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	683	Open in IMG/M
3300005332\|Ga0066388_100324543	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2185	Open in IMG/M
3300005332\|Ga0066388_101570268	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1156	Open in IMG/M
3300005340\|Ga0070689_101361096	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	640	Open in IMG/M
3300005438\|Ga0070701_10938955	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	600	Open in IMG/M
3300005440\|Ga0070705_100164460	All Organisms → cellular organisms → Bacteria	1487	Open in IMG/M
3300005440\|Ga0070705_100480702	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	938	Open in IMG/M
3300005529\|Ga0070741_10004486	All Organisms → cellular organisms → Bacteria	32540	Open in IMG/M
3300005530\|Ga0070679_101701108	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	579	Open in IMG/M
3300005547\|Ga0070693_100217758	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1249	Open in IMG/M
3300005618\|Ga0068864_102239769	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	553	Open in IMG/M
3300005764\|Ga0066903_106276184	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	621	Open in IMG/M
3300005764\|Ga0066903_107961437	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	544	Open in IMG/M
3300005841\|Ga0068863_102573140	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	518	Open in IMG/M
3300005842\|Ga0068858_100637966	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1035	Open in IMG/M
3300006042\|Ga0075368_10150793	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	971	Open in IMG/M
3300006604\|Ga0074060_11830025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	582	Open in IMG/M
3300006806\|Ga0079220_10568146	Not Available	796	Open in IMG/M
3300006845\|Ga0075421_102391105	Not Available	553	Open in IMG/M
3300006854\|Ga0075425_100084121	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3600	Open in IMG/M
3300009177\|Ga0105248_11404683	All Organisms → cellular organisms → Bacteria	790	Open in IMG/M
3300009553\|Ga0105249_10115097	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2547	Open in IMG/M
3300010359\|Ga0126376_12248094	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	591	Open in IMG/M
3300010362\|Ga0126377_10032984	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4393	Open in IMG/M
3300010362\|Ga0126377_10159459	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2127	Open in IMG/M
3300010371\|Ga0134125_11396665	All Organisms → cellular organisms → Bacteria → Proteobacteria	763	Open in IMG/M
3300010371\|Ga0134125_12727841	Not Available	537	Open in IMG/M
3300010396\|Ga0134126_11850463	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	661	Open in IMG/M
3300012489\|Ga0157349_1036791	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300012494\|Ga0157341_1018883	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300012508\|Ga0157315_1002548	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1149	Open in IMG/M
3300012513\|Ga0157326_1006829	All Organisms → cellular organisms → Bacteria	1225	Open in IMG/M
3300012896\|Ga0157303_10000934	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3894	Open in IMG/M
3300012901\|Ga0157288_10000021	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	15444	Open in IMG/M
3300012907\|Ga0157283_10021215	All Organisms → cellular organisms → Bacteria	1234	Open in IMG/M
3300012910\|Ga0157308_10308847	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	582	Open in IMG/M
3300012943\|Ga0164241_11042856	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300012948\|Ga0126375_10008850	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	4123	Open in IMG/M
3300012985\|Ga0164308_10510996	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1007	Open in IMG/M
3300014262\|Ga0075301_1067553	All Organisms → cellular organisms → Bacteria	722	Open in IMG/M
3300014321\|Ga0075353_1120053	All Organisms → cellular organisms → Bacteria	635	Open in IMG/M
3300015371\|Ga0132258_10282287	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4075	Open in IMG/M
3300015371\|Ga0132258_13055592	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1158	Open in IMG/M
3300015372\|Ga0132256_102575603	All Organisms → cellular organisms → Bacteria → Proteobacteria	609	Open in IMG/M
3300015373\|Ga0132257_100955213	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1077	Open in IMG/M
3300015374\|Ga0132255_102697313	All Organisms → cellular organisms → Bacteria	759	Open in IMG/M
3300015374\|Ga0132255_104608145	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	584	Open in IMG/M
3300019356\|Ga0173481_10000447	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8787	Open in IMG/M
3300021560\|Ga0126371_12007911	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	696	Open in IMG/M
3300022737\|Ga0247747_1003598	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1479	Open in IMG/M
3300022901\|Ga0247788_1005967	All Organisms → cellular organisms → Bacteria	1978	Open in IMG/M
3300025538\|Ga0210132_1014463	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1075	Open in IMG/M
3300025900\|Ga0207710_10072385	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1583	Open in IMG/M
3300025901\|Ga0207688_10014620	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4264	Open in IMG/M
3300025907\|Ga0207645_10140378	All Organisms → cellular organisms → Bacteria	1574	Open in IMG/M
3300025912\|Ga0207707_10311679	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1359	Open in IMG/M
3300025917\|Ga0207660_10124985	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1952	Open in IMG/M
3300025925\|Ga0207650_10504756	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1011	Open in IMG/M
3300025932\|Ga0207690_11696131	Not Available	528	Open in IMG/M
3300025959\|Ga0210116_1020079	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1240	Open in IMG/M
3300025965\|Ga0210090_1016112	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1021	Open in IMG/M
3300025985\|Ga0210117_1021267	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	949	Open in IMG/M
3300026035\|Ga0207703_10103068	Not Available	2422	Open in IMG/M
3300026116\|Ga0207674_11187751	All Organisms → cellular organisms → Bacteria	732	Open in IMG/M
3300026725\|Ga0207474_102081	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	639	Open in IMG/M
3300026995\|Ga0208761_1013173	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	731	Open in IMG/M
3300027765\|Ga0209073_10249769	Not Available	689	Open in IMG/M
3300027775\|Ga0209177_10486532	Not Available	512	Open in IMG/M
3300027866\|Ga0209813_10062847	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1189	Open in IMG/M
3300027876\|Ga0209974_10059924	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1287	Open in IMG/M
3300027992\|Ga0247750_1002892	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1280	Open in IMG/M
(restricted) 3300031150\|Ga0255311_1000248	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	7794	Open in IMG/M
(restricted) 3300031150\|Ga0255311_1118363	Not Available	579	Open in IMG/M
(restricted) 3300031197\|Ga0255310_10032088	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1359	Open in IMG/M
3300031716\|Ga0310813_10019258	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4624	Open in IMG/M
3300031720\|Ga0307469_12475719	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	507	Open in IMG/M
3300031740\|Ga0307468_100014791	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3225	Open in IMG/M
3300031858\|Ga0310892_10544185	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	779	Open in IMG/M
3300031913\|Ga0310891_10004295	All Organisms → cellular organisms → Bacteria	3005	Open in IMG/M
3300031913\|Ga0310891_10123950	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	816	Open in IMG/M
3300032174\|Ga0307470_10650175	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	796	Open in IMG/M
3300032174\|Ga0307470_11675422	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	534	Open in IMG/M
3300032205\|Ga0307472_100623568	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	956	Open in IMG/M
3300033513\|Ga0316628_100252183	Not Available	2162	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	69.91%
Host-Associated	Host-Associated	29.20%
Engineered	Engineered	0.89%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	61.95%
Plants	Host-Associated → Plants	29.20%
Aquatic	Environmental → Aquatic	7.96%
Solid Waste	Engineered → Solid Waste	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	61.95%
Rhizoplane	Host-Associated → Plants → Rhizoplane	19.47%
Marine	Environmental → Aquatic → Marine	7.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.96%
Roots	Host-Associated → Plants → Roots	1.77%
Grass	Engineered → Solid Waste → Grass	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	45.13%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	13.27%
Loam	Environmental → Terrestrial → Soil → Loam	11.50%
Wetlands	Environmental → Aquatic → Marine → Wetlands	7.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	6.19%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.42%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.54%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.65%
Sand	Environmental → Terrestrial → Soil → Sand	2.65%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	1.77%
Composting	Engineered → Solid Waste → Grass → Composting	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.24%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	14.16%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	13.27%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	7.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	6.19%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.42%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.42%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.54%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.54%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.65%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.65%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.65%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	2.65%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	1.77%
Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor	0.89%

Habitat	Taxonomy	Distribution
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	7.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.08%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	7.08%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.31%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	5.31%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.42%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.42%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.54%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.54%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.54%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.54%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.65%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	2.65%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.65%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	2.65%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.65%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	1.77%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	1.77%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.77%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	1.77%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.77%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.89%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.89%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.89%
Switchgrass Rhizosphere Bulk Soil	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere Bulk Soil	0.89%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.89%
Sugar Cane Bagasse Incubating Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor → Sugar Cane Bagasse Incubating Bioreactor	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090015	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000156	Sugar cane bagasse incubating bioreactor microbial communities from Sao Carlos, Brazil, that are aerobic and semianaerobic	Engineered	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300001976	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S7	Host-Associated	Open in IMG/M
3300001990	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3	Host-Associated	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300003994	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D2	Environmental	Open in IMG/M
3300004024	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D2	Environmental	Open in IMG/M
3300004062	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004145	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqB_D2	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005103	Soil and rhizosphere microbial communities from Laval, Canada - mgLAA	Environmental	Open in IMG/M
3300005162	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005183	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D1	Environmental	Open in IMG/M
3300005276	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Mutant cpr5	Host-Associated	Open in IMG/M
3300005280	Switchgrass rhizosphere microbial community from Michigan, USA - East Lansing bulk soil	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006042	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3	Host-Associated	Open in IMG/M
3300006604	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300012489	Unplanted soil (control) microbial communities from North Carolina - M.Soil.5.yng.040610	Environmental	Open in IMG/M
3300012494	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.2.yng.030610	Host-Associated	Open in IMG/M
3300012508	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.2.old.270510	Host-Associated	Open in IMG/M
3300012513	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.2.old.250510	Host-Associated	Open in IMG/M
3300012896	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S118-311C-2	Environmental	Open in IMG/M
3300012901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S119-311C-1	Environmental	Open in IMG/M
3300012907	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1	Environmental	Open in IMG/M
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental	Open in IMG/M
3300012943	Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300014262	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleA_D1	Environmental	Open in IMG/M
3300014321	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleB_D1	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022737	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S094-311B-5	Environmental	Open in IMG/M
3300022901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S156-409C-4	Environmental	Open in IMG/M
3300025538	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleC_D2 (SPAdes)	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025959	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqB_D2 (SPAdes)	Environmental	Open in IMG/M
3300025965	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025985	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqC_D2 (SPAdes)	Environmental	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026725	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07A5-12 (SPAdes)	Environmental	Open in IMG/M
3300026995	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300027866	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes)	Host-Associated	Open in IMG/M
3300027876	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027992	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S125-311R-5	Environmental	Open in IMG/M
3300031150 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH4_T0_E4	Environmental	Open in IMG/M
3300031197 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031913	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D4	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
GPICI_03018530	2088090015	Soil	MKCWREPSLEDILSDPITQAVISADGVDTGELEAMLRQVAHKRRSVRRSAGATA
NODE_06687335	3300000156	Sugar Cane Bagasse Incubating Bioreactor	MKCWREPSLEDILSDPIVKAVIEADGVDTNELDAMLRQIAHKRSVSRSGATAWL*
JGI10214J12806_130770891	3300000891	Soil	ILSDPITQAVISADRVDTGELDAMLRQVAHKRRSVRRSAGATA*
JGI11615J12901_111179682	3300000953	Soil	MKYCREPSLEDILADPIIQAVIDADGVDAHELDAMLRGVARKRRSAERTASFAPW*
JGI24752J21851_10088492	3300001976	Corn, Switchgrass And Miscanthus Rhizosphere	LSLEDMLADPIIQAVIDADGVDANELDAMLRGVAHERRSAERMASAAWRR*
JGI24737J22298_100146321	3300001990	Corn Rhizosphere	WREPSLEDILSDPITQAVISADGVDTGELDAMLRRVAHKRRSAQRSASATA*
soilL2_100683732	3300003319	Sugarcane Root And Bulk Soil	MKCWREPSLEDILSDPITQAVISADGVDTGELDAMLRQIAHKRRSVRRSAGATT*
soilH2_102943382	3300003324	Sugarcane Root And Bulk Soil	MNCCREPSLEDILSDPIVKAVIDADGLDANELDAMLRGVAQRRRSVQRTVGARP*
JGI25405J52794_100060352	3300003911	Tabebuia Heterophylla Rhizosphere	MHFLPVRQSKVNPMTCWREPSLEDILSDPITKAVISADGVDTGELDAMLRCVAQKRRSAERSTGAAVWRR*
Ga0055435_101293821	3300003994	Natural And Restored Wetlands	MKCWREPSLEDILSDPLTQAVISADGVDANELDAMLRRVAHKRRSAAGGKGDGVGVVS*
Ga0055436_100456471	3300004024	Natural And Restored Wetlands	MKCWREPSLEDILSDPLTQAVISADGVDANELDAMLRRVAHQRRSAAGSIGRGR*
Ga0055500_100588961	3300004062	Natural And Restored Wetlands	MKCWRELSLEDILSDPLTQAVISADGVDANELDAMLRRVAHQRRSAADSIGRGR*
Ga0062593_1015432652	3300004114	Soil	MKCWREPSLEDILSDPITQAVISADGVDANELDAMLRRVEHKRRSAPDSIGRGR*
Ga0055489_100201132	3300004145	Natural And Restored Wetlands	MKCWREPSLEDILSDPLTQAVISADGVDANELDAMLRRVAHKRRSAAGGKGDGIGVVS*
Ga0062589_1012377342	3300004156	Soil	MRCYREPSLEDILADPIIQAVIDADGVDANELDAMLRGVAHERRSAEGMASAAWRRW*
Ga0062590_1006604522	3300004157	Soil	MRCWREPSLEEILSDPITQAVISADGVDTGELDAMLRQVAHKRRSVRRSAGATA*
Ga0063356_1030836172	3300004463	Arabidopsis Thaliana Rhizosphere	MKCYRELSLEDMLADPIIQAVIDADGVDANELDAMLRGVAHERRSAERMASAAWRR*
Ga0063356_1061410872	3300004463	Arabidopsis Thaliana Rhizosphere	MKCWREPSLEDILSDPITQAVISADGVDANELDAMLRHVAHKRRSTADSIGRGR*
Ga0062592_1017260862	3300004480	Soil	MNYCREPSLEDILSDPIIKAVIDADGVDANELGAMLRRVANTRRLAADSVGRRW*
Ga0062591_1020852331	3300004643	Soil	IRSRFMKCWREPSLEDILSDPITQAVISADRVDASELDAMLRRVAQSRRLVGDSIGQGR*
Ga0062594_1000524702	3300005093	Soil	MKCWREPSLEDILSDPIVKAVIEADGVDTNELDAMLRQIAHKRSVGRSGATAWL*
Ga0062594_1013472182	3300005093	Soil	ILSDPITQAVISADGVDTGELDAMLRQVAHKRRSVRRSAGATA*
Ga0066813_10018752	3300005103	Soil	MRACREPSLQDILSDPITRAVISADGVDTGELDAMLRRVAHKRRSAQRSASATA*
Ga0066814_100164872	3300005162	Soil	MRACREPSLHDILSDPITQAVISADGVDTGELEAMLRQVAQKRRSAADSMGRGR*
Ga0066814_100187482	3300005162	Soil	MKCWREPSLEDILSDPITQAVISADGVNTGELDAMLRWVAHKRRSAQRSASATA*
Ga0066809_100502881	3300005168	Soil	MRACREPSLQDILSDPITQAVISADGVDTGELDPMLRQVAQKRRSAADSMGRGR*
Ga0068993_100581372	3300005183	Natural And Restored Wetlands	MKCWREPSLEDILSDPLTQAVISADGVDANELDAMLRRVAHQRRSAADSIGRGR*
Ga0065717_10001333	3300005276	Arabidopsis Rhizosphere	MKCWREPSLEDILSDPITQAVISADGVDTGELDAMLRRVAHKRRSAQRSASATA*
Ga0065696_12194761	3300005280	Switchgrass Rhizosphere Bulk Soil	MKCWREPSLEDILSDPITQAVISADGVDTGELDAMLRRVAHKRRSAQRSAGATA*
Ga0070683_1013591421	3300005329	Corn Rhizosphere	MKCWREPSLEDILSDPIVKAVIEADGVDTNELDAMLRQIAHKRSVGRS
Ga0066388_1003245434	3300005332	Tropical Forest Soil	MTCWREPSLEDILSDPIVKAVIDADDVDTNELDAMLRRVAHKRRVDFGATMRQ*
Ga0066388_1015702682	3300005332	Tropical Forest Soil	MNCWREPSLEDILSDPITQAVISADGVDTGELDAMLRRVAQKRRSAERSMGASVWRR*
Ga0070689_1013610962	3300005340	Switchgrass Rhizosphere	EDILSDPITQAVISADGVDTGELDALLRRVAHKRRSAQRSASATA*
Ga0070701_109389551	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MKCWREPSLEDILSDPITQAVISADGVDTGELDALLRRVAHKRRSAQRSASATA*
Ga0070705_1001644601	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MKCWREPSLEDILSDPITQAVISADGVDTGELDAMLRQVAHKRRSVRRSAGATA*
Ga0070705_1004807022	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MKCWREPSLEDILSDPITQAVISADGVDANELDAMLRRVAHKRRSAANSIGHGR*
Ga0070741_1000448637	3300005529	Surface Soil	MKCCREPSLEDILSDPIVKAVIDADGVDTNELNAMLRCVAHRRRSLERGAPLVARR*
Ga0070679_1017011082	3300005530	Corn Rhizosphere	MKCWREPSLEDILSDPIVKAVIEADGVDTNELDAMLRQIAHKRSVGRSGA
Ga0070693_1002177582	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MKCWREPSPEDILSDPIVKAVIEADGVDTNELDAMLRQIAHKRSVGRSGAMAWL*
Ga0068864_1022397691	3300005618	Switchgrass Rhizosphere	AIRSRFMKCWREPSLEDILSDPITQAVISADRVDASELDAMLRRVAQSRRLVGDSIGQGR
Ga0066903_1062761842	3300005764	Tropical Forest Soil	MTCWREPSLEDILSDPIVKAVIEADDVDTNELDAMLRRVAHKRRVGLGATARQ*
Ga0066903_1079614371	3300005764	Tropical Forest Soil	MTCWREPSLEDILSDPIIRAVIEADGVDTTELNAMLRRIAHKRGAAAAGATH*
Ga0068863_1025731401	3300005841	Switchgrass Rhizosphere	PSLEDILSDPITQAVISADRVDASELDAMLRRVAQSRRLVGDSIGQGR*
Ga0068858_1006379662	3300005842	Switchgrass Rhizosphere	MKCWREPSLEDILSDPITQAVISADRVDASELDAMLRRVAQSRRLVGDSIGQGR*
Ga0075368_101507932	3300006042	Populus Endosphere	MKCYRELSLEDMLADPIIQAVIDAVGVDANELDAMLRGVAHERRSAERMASAAWRR*
Ga0074060_118300252	3300006604	Soil	MKCWREPSLEDILSDPITQAVISADGVNTGELDAMLRWVAHKRRSAQRS
Ga0079220_105681461	3300006806	Agricultural Soil	SLEDILSDPITQAVISADGVDTGELDAMLRGVVQKRRSAERATGAAFWRR*
Ga0075421_1023911051	3300006845	Populus Rhizosphere	MKCWREPSLEDILSDPITQAVISADGVDTGELEAMLRQVAHKRRSVRRSAGATA*
Ga0075425_1000841212	3300006854	Populus Rhizosphere	MNCWREPSLEDILSDPITQAVISADGVDTGELDAMLRCVAQKRRSAERSMGATVWRR*
Ga0105248_114046831	3300009177	Switchgrass Rhizosphere	IRSRFMKCWREPSLEDILSDPITQAVISADGVDTGELDAMLRRVAHKRRSAQRSASATA*
Ga0105249_101150972	3300009553	Switchgrass Rhizosphere	MKCWREPSLEDILSDPITQAVISADAVDTGELDALLRRVAHKRRSAQRSASATA*
Ga0126376_122480942	3300010359	Tropical Forest Soil	MNCWREPSLEDILSDPITKAVIEADGVDMHELGAMLRQIAQQRRTGVSATMRV*
Ga0126377_100329842	3300010362	Tropical Forest Soil	MTCWREPSLEDILSDPIVKAVIEADGVDTNELDAMLRRVAHKRRVGFSAATRQ*
Ga0126377_101594592	3300010362	Tropical Forest Soil	MNCWREPSLEDILSDPITQAVISADGVDTGELDAMLRCVAHKRRKAEGALLTKMR*
Ga0134125_113966652	3300010371	Terrestrial Soil	MKCWREPSLEDILSDPITQAVISADGVDTNKLDAMLRHVANTRRSTANSIGRGG*
Ga0134125_127278412	3300010371	Terrestrial Soil	MKCWREPSLEDILSDPITQAVISADRVDANELDAMLRRVAQSRRLVADSIGQGR*
Ga0134126_118504632	3300010396	Terrestrial Soil	MKCWREPSPEDILSDPIVKAVIEADGVDTNELDAMLRQIAHKRSVGRSGATAWL*
Ga0157349_10367911	3300012489	Unplanted Soil	LEDILSDPITQAVISADGVDTGELDAMLRRVAHKRRSAQRSASATA*
Ga0157341_10188831	3300012494	Arabidopsis Rhizosphere	EPSLEDILSDPITQAVISADGVDTGELDAMLRRVAHKRRSAQRSASATA*
Ga0157315_10025482	3300012508	Arabidopsis Rhizosphere	MKCWREPSLEDILSDPITQAVISADGVDTGELDAMLRRVAHKRRSAQRSASAT
Ga0157326_10068292	3300012513	Arabidopsis Rhizosphere	SLEDILSDPITQAVISADGVDTGELDAMLRRVAHKRRSAQRSASATA*
Ga0157303_100009341	3300012896	Soil	MKCWREPSLEDILSDPITQAVISADRVDASELDAMLRRVAQSRR
Ga0157288_1000002112	3300012901	Soil	MKCYRELCLEDMLADPIIQAVIGADGVDANELDAMLRGVAHERRSAERMASAAWRR*
Ga0157283_100212151	3300012907	Soil	QAIRSRFMKCWREPSLEDILSDPITQAVISADGVDTGELDAMLRRVAHKRRSAQRSASATA*
Ga0157308_103088472	3300012910	Soil	MNYCREPSLEDILSDPIIKAVIDADGVDANELGAMLRRVANARRLAADSVGRGW*
Ga0164241_110428562	3300012943	Soil	MNYCREPSLEDILSDPIIKAVIDADGVDANELGAMLRRVANTRRLAADSVGRGW*
Ga0126375_100088506	3300012948	Tropical Forest Soil	MTYWREPSLEDILSDPIVKAVIDADDVDTNELDAMLRRVAHKRRVDFGATMRQ*
Ga0164308_105109961	3300012985	Soil	MKCWREPSLEDILSDPITQAVISADGVDENELDAMLRRVAHTRRSTADSIGRGR*
Ga0075301_10675531	3300014262	Natural And Restored Wetlands	CWREPSLEDILSDPLTQAVISADGVDANELDAMLRRVAHKRRSAAGGKGDGVGVVS*
Ga0075353_11200531	3300014321	Natural And Restored Wetlands	RSRSMKCWRELSLEDILSDPLTQAVISADGVDANELDAMLRRVAHQRRSAADSIGRGR*
Ga0132258_102822872	3300015371	Arabidopsis Rhizosphere	MIFCRNKKPGVSPMRECREPSLQDILSDPITQAVISADGVDTGELDAMLRQVAQKRRSAADSMGRGR*
Ga0132258_130555922	3300015371	Arabidopsis Rhizosphere	MKCWREPSLEDILSDPITQAVISADGVDANELDAMLRRVAHKRRSAANSIGRGR*
Ga0132256_1025756032	3300015372	Arabidopsis Rhizosphere	MIFCRNKKPGVSPMRACREPSLQDILSDPITQAVISADGVDTGELDAMLRQVAQKRRSAADSMGRGR*
Ga0132257_1009552132	3300015373	Arabidopsis Rhizosphere	MKCYRELSLEDMLADPIIQAVIDADGVDANELDAMLRGVAHERRSAERMASAAWRRW*
Ga0132255_1026973132	3300015374	Arabidopsis Rhizosphere	CWREPSLEDILSDPITQAVISADRVDASELDAMLRRVAQSRRLVGDSIGQGR*
Ga0132255_1046081451	3300015374	Arabidopsis Rhizosphere	MKCWREPSLEDILSDPITQAVISADRVDANELDDMLRRLAQSRRLV
Ga0173481_100004472	3300019356	Soil	MKCYRELSLEDMLADPIIQAVIDADGVDANELDAMLRGVAHERRSAERMASAAWRR
Ga0126371_120079111	3300021560	Tropical Forest Soil	MKCWREPSLEDILSDPIVKAVIEADGVDTNELDAMLRQIAHKRSVGHSGATAWL
Ga0247747_10035981	3300022737	Soil	MKCWREPSLEDILSDPITQAVISADGVDTGELDALLRRVAHKRRSAQ
Ga0247788_10059672	3300022901	Soil	MKCWREPSLEDILSDPITQAVISADGVDTGELDAMLRRVAHKRRSAQRSASATA
Ga0210132_10144632	3300025538	Natural And Restored Wetlands	MKCWREPSLEDILSDPLTQAVISADGVDANELDAMLRRVAHKRRSAAGGKGDGVGVVS
Ga0207710_100723852	3300025900	Switchgrass Rhizosphere	MKCWREPSLEDILSDPITQAVISADRVDASELDAMLRRVAQSRRLVGDSIGQGR
Ga0207688_100146202	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MKCWREPSLEDILSDPITQAVISADGVDTGELDALLRRVAHKRRSAQRSASATA
Ga0207645_101403781	3300025907	Miscanthus Rhizosphere	MKCWREPSLEDILSDPITQAVISADGVDANELDAMLRRVEHKRRSAPDSIGRGR
Ga0207707_103116792	3300025912	Corn Rhizosphere	MKCWREPSLEDILSDPIVKAVIEADGVDTNELDAMLRQIAHKRSVGRSGATAWL
Ga0207660_101249852	3300025917	Corn Rhizosphere	MKCWREPSLEDILSDPITQAVISADGVDTGELDAMLRQVAHKRRSVRRSAGATA
Ga0207650_105047561	3300025925	Switchgrass Rhizosphere	DAMKCYRELSLEDMLADPIIQAVIDADGVDANELDAMLRGVAHERRSAERMASAAWRR
Ga0207690_116961311	3300025932	Corn Rhizosphere	MKCWREPSPEDILSDPIVKAVIEADGVDTNELDAMLRQIAHKRSVGRSGATAWL
Ga0210116_10200792	3300025959	Natural And Restored Wetlands	MKCWREPSLEDILSDPLTQAVISADGVDANELDAMLRRVAHKRRSAAGGKGDGIGVVS
Ga0210090_10161123	3300025965	Natural And Restored Wetlands	MKCWRELSLEDILSDPLTQAVISADGVDANELDAMLRRVAHQRRSAADSIGRGR
Ga0210117_10212672	3300025985	Natural And Restored Wetlands	MKCWRELSLEDILSDPLTQAVISADGVDANELDAMLRCVAHQRRSAADSIGRGR
Ga0207703_101030681	3300026035	Switchgrass Rhizosphere	MKCWREPSLEDILSDPITQAVISADRVDASELDAMLRRVAQSRRLVGDSIG
Ga0207674_111877511	3300026116	Corn Rhizosphere	CWREPSLEDILSDPITQAVISADGVDTGELDAMLRRVAHKRRSAQRSASATA
Ga0207474_1020811	3300026725	Soil	MKCYRELSLEDMLADPIIQAVIDADGVDANELDAMLRGVAHERRSAERMASAA
Ga0208761_10131732	3300026995	Soil	MKCWREPSLEDILSDPITQAVISADGVNTGELDAMLRWVAHKRRSAQRSASATA
Ga0209073_102497692	3300027765	Agricultural Soil	LEDILSDPITQAVISADGVDTGELDAMLRGVVQKRRSAERATGAAFWRR
Ga0209177_104865321	3300027775	Agricultural Soil	MKCWREPSLEDILSDPITQAVISADGVDTGELDAMLRGVVQKRRSAERATGAAFW
Ga0209813_100628472	3300027866	Populus Endosphere	MKCYRELSLEDMLADPIIQAVIDAVGVDANELDAMLRGVAHERRSAERMASAAWRR
Ga0209974_100599242	3300027876	Arabidopsis Thaliana Rhizosphere	MKCWREPSLEDILSDPITQAVISADGVDTGELDAMLRRVAHKRRSAQRSAGATA
Ga0247750_10028921	3300027992	Soil	MKCYRELSLEDMLADPIIQAVIDADGVDANELDAMLRGVAHERRSAERMASA
(restricted) Ga0255311_10002486	3300031150	Sandy Soil	MKCWREPSLEDILSDPITQAVISADGVDIGELDAMLRQVAHKRRSARRSAGATA
(restricted) Ga0255311_11183631	3300031150	Sandy Soil	MKCWREPSLEDILSDPITQAVISADGVDTGVLDAMLRQVAHKRRSARRSAGATA
(restricted) Ga0255310_100320882	3300031197	Sandy Soil	MKCWREPSLEDILSDPITQAVISADGVDANELDAMLRRVAHKRRSAADSIGRGR
Ga0310813_100192582	3300031716	Soil	MKCWREPSLEDILSDPITQAVISADGVDANELDAMLRHVAHKRRSTADSIGRGR
Ga0307469_124757191	3300031720	Hardwood Forest Soil	KPGVSPMRACREPSLQDILSDPIIQAVISADGVDPGELDLMLRQVAQKRRSVADSIGRGR
Ga0307468_1000147913	3300031740	Hardwood Forest Soil	MNYCREPSLEDILSDPIIKAVIDADGVNANELGAMLRRIANTRRLAAESASRGW
Ga0310892_105441852	3300031858	Soil	MRACREPSLQDILSDPITQAVISADGVDTGELDAMLRQVAQKRRSAADSMGRGR
Ga0310891_100042952	3300031913	Soil	MKCWREPSLEDILSDPITQAVISADAVDTGELDALLRRVAHKRRSAQRSASATA
Ga0310891_101239502	3300031913	Soil	MKCYRELSLEDMLADPIIQAVIDADGVDANELDAMLRGVAHERRSAE
Ga0307470_106501752	3300032174	Hardwood Forest Soil	MNYCREPSLEDILSDPIIKAVIDADGVNANELGAMLRRIANTRRLAA
Ga0307470_116754222	3300032174	Hardwood Forest Soil	MRACREPSLQDILSDPIIQAVISADGVDPGELDAMLRQVAQKRRSTADSIGRGR
Ga0307472_1006235682	3300032205	Hardwood Forest Soil	MNCWREPSLEDILSDPITQAVISADGVDTGELDAMLRCVAQKRRSAERSAGAALWRR
Ga0316628_1002521831	3300033513	Soil	MTCYREPSLEDILSDPITQAVISADGVDPGQLNTMLRCVAQKRRSAEAAQRFQK

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.50
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.50
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters